Query 020961
Match_columns 319
No_of_seqs 186 out of 1406
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 10:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3prh_A Tryptophanyl-tRNA synth 100.0 1.8E-71 6.3E-76 544.2 22.8 225 80-318 37-261 (388)
2 3n9i_A Tryptophanyl-tRNA synth 100.0 2.1E-71 7.1E-76 537.1 21.0 229 76-317 13-241 (346)
3 3sz3_A Tryptophanyl-tRNA synth 100.0 1.3E-71 4.6E-76 537.7 18.8 230 78-317 6-235 (341)
4 2yy5_A Tryptophanyl-tRNA synth 100.0 3.9E-68 1.3E-72 514.8 20.0 229 78-318 4-237 (348)
5 1i6k_A TRPRS, tryptophanyl-tRN 100.0 2.4E-67 8.3E-72 505.7 22.8 226 79-318 2-227 (328)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 6.7E-67 2.3E-71 501.5 21.3 221 78-317 3-223 (322)
7 1yi8_B Tryptophanyl-tRNA synth 100.0 1.3E-65 4.3E-70 497.8 22.5 224 76-316 20-245 (351)
8 2el7_A Tryptophanyl-tRNA synth 100.0 1.3E-64 4.5E-69 488.2 22.1 221 79-317 2-226 (337)
9 2g36_A Tryptophanyl-tRNA synth 100.0 3.4E-64 1.1E-68 486.0 19.5 221 77-317 11-236 (340)
10 3vgj_A Tyrosyl-tRNA synthetase 100.0 8.3E-59 2.8E-63 453.2 19.6 216 77-317 55-279 (373)
11 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.7E-59 5.9E-64 458.4 14.1 219 77-317 32-283 (375)
12 3jxe_A Tryptophanyl-tRNA synth 100.0 4.5E-59 1.5E-63 457.4 16.6 209 76-317 71-286 (392)
13 2j5b_A Tyrosyl-tRNA synthetase 100.0 3.7E-59 1.3E-63 452.0 15.2 213 77-316 39-263 (348)
14 2cya_A Tyrosyl-tRNA synthetase 100.0 5.3E-59 1.8E-63 453.3 15.8 214 77-317 34-270 (364)
15 3a04_A Tryptophanyl-tRNA synth 100.0 3.9E-58 1.3E-62 448.4 17.7 208 77-317 69-288 (372)
16 3p0j_A Tyrosyl-tRNA synthetase 100.0 6.6E-55 2.3E-59 453.5 18.0 215 77-317 39-262 (690)
17 2cyb_A Tyrosyl-tRNA synthetase 100.0 1.7E-54 5.7E-59 415.0 18.7 210 77-317 31-245 (323)
18 3hzr_A Tryptophanyl-tRNA synth 100.0 2.2E-54 7.6E-59 423.4 16.2 207 76-316 80-301 (386)
19 3tze_A Tryptophanyl-tRNA synth 100.0 4.6E-54 1.6E-58 423.4 16.3 208 76-317 99-322 (406)
20 1n3l_A Tyrosyl-tRNA synthetase 100.0 2.1E-53 7.2E-58 414.9 17.5 212 77-317 34-254 (372)
21 2zp1_A Tyrosyl-tRNA synthetase 100.0 2.9E-53 9.9E-58 405.5 16.5 204 76-317 26-235 (314)
22 2yxn_A Tyrosyl-tRNA synthetase 100.0 4E-53 1.4E-57 405.9 16.6 207 77-311 32-263 (322)
23 2dlc_X Tyrosyl-tRNA synthetase 100.0 5.8E-53 2E-57 414.6 16.0 213 77-317 38-259 (394)
24 2ip1_A Tryptophanyl-tRNA synth 100.0 2.7E-52 9.3E-57 414.0 16.5 206 77-316 101-327 (432)
25 1r6u_A Tryptophanyl-tRNA synth 100.0 3.6E-52 1.2E-56 413.3 14.7 205 77-315 107-333 (437)
26 3foc_A Tryptophanyl-tRNA synth 100.0 2.9E-52 9.9E-57 414.6 13.3 208 77-317 90-366 (451)
27 3hv0_A Tryptophanyl-tRNA synth 100.0 5.2E-52 1.8E-56 407.5 14.4 208 77-317 73-299 (393)
28 3i05_A Tryptophanyl-tRNA synth 100.0 6.5E-52 2.2E-56 407.1 13.3 208 76-317 76-302 (395)
29 1r6t_A Tryptophanyl-tRNA synth 100.0 1.9E-51 6.3E-56 412.4 15.7 206 77-316 154-381 (477)
30 2jan_A Tyrosyl-tRNA synthetase 100.0 6.9E-51 2.4E-55 403.6 17.0 206 77-311 31-260 (432)
31 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.9E-50 6.4E-55 400.8 18.6 209 77-314 36-260 (432)
32 2pid_A Tyrosyl-tRNA synthetase 100.0 9.8E-51 3.4E-55 394.2 14.7 205 77-311 45-282 (356)
33 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 6.5E-49 2.2E-53 388.7 19.9 203 77-311 31-259 (420)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.5E-49 5.2E-54 392.8 13.9 204 77-311 29-258 (419)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 2.5E-48 8.6E-53 381.5 18.8 221 77-315 63-324 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 4.2E-41 1.5E-45 349.9 16.7 209 71-315 375-594 (690)
37 1nzj_A Hypothetical protein YA 99.3 1.1E-12 3.8E-17 124.3 7.2 187 86-304 13-247 (298)
38 2ja2_A Glutamyl-tRNA synthetas 99.2 8.8E-12 3E-16 125.6 7.5 196 86-310 14-286 (498)
39 1j09_A Glutamyl-tRNA synthetas 99.2 4.2E-12 1.4E-16 127.1 5.0 191 86-310 9-272 (468)
40 3afh_A Glutamyl-tRNA synthetas 99.2 5.4E-12 1.9E-16 126.9 3.6 197 80-310 27-284 (488)
41 3al0_C Glutamyl-tRNA(Gln) amid 99.1 1.1E-11 3.9E-16 127.1 -0.9 199 79-310 130-388 (592)
42 2cfo_A Glutamyl-tRNA synthetas 99.1 6.3E-10 2.1E-14 112.0 11.3 192 85-310 8-276 (492)
43 2o5r_A Glutamyl-tRNA synthetas 98.5 2.1E-07 7.3E-12 93.3 9.7 199 79-310 14-291 (481)
44 4g6z_A Glutamate-tRNA ligase; 98.5 2.3E-06 7.7E-11 86.1 14.7 198 78-310 25-293 (490)
45 3aii_A Glutamyl-tRNA synthetas 98.3 2.9E-06 9.8E-11 86.4 12.5 175 81-288 97-334 (553)
46 4gri_A Glutamate--tRNA ligase; 98.3 2.3E-06 7.8E-11 86.4 11.0 179 81-289 25-279 (512)
47 1qtq_A GLNRS, protein (glutami 98.1 9E-06 3.1E-10 82.8 9.7 94 79-180 27-130 (553)
48 2hz7_A Glutaminyl-tRNA synthet 97.8 0.00012 4.1E-09 77.8 13.2 93 81-180 69-170 (851)
49 2d5b_A Methionyl-tRNA syntheta 97.6 0.00029 1E-08 69.9 11.5 79 79-159 4-97 (500)
50 2csx_A Methionyl-tRNA syntheta 97.6 0.00071 2.4E-08 67.2 13.4 79 79-159 6-99 (497)
51 1iq0_A Arginyl-tRNA synthetase 97.2 0.00023 7.9E-09 72.8 5.0 41 79-119 106-152 (592)
52 3tqo_A Cysteinyl-tRNA syntheta 96.7 0.0052 1.8E-07 61.3 9.7 74 77-151 24-112 (462)
53 3fnr_A Arginyl-tRNA synthetase 96.5 0.0077 2.6E-07 60.0 9.3 40 82-121 36-81 (464)
54 2zue_A Arginyl-tRNA synthetase 96.4 0.0029 1E-07 65.2 5.6 40 80-119 123-168 (629)
55 1f7u_A Arginyl-tRNA synthetase 96.0 0.021 7.1E-07 58.7 9.5 39 81-119 148-192 (607)
56 3u1f_A Methionyl-tRNA syntheta 95.4 0.069 2.4E-06 53.3 10.2 77 75-151 7-97 (542)
57 1irx_A Lysyl-tRNA synthetase; 95.1 0.029 1E-06 56.3 6.7 79 78-159 21-129 (523)
58 3h99_A Methionyl-tRNA syntheta 94.8 0.16 5.4E-06 51.2 10.9 80 78-159 19-112 (560)
59 3kfl_A Methionyl-tRNA syntheta 94.5 0.23 7.8E-06 50.2 11.4 88 70-159 19-120 (564)
60 4dlp_A Aminoacyl-tRNA syntheta 93.9 0.31 1.1E-05 48.7 10.9 79 79-159 26-119 (536)
61 1rqg_A Methionyl-tRNA syntheta 93.1 0.29 9.8E-06 51.1 9.4 74 78-151 3-91 (722)
62 2x1l_A Methionyl-tRNA syntheta 90.4 1.1 3.8E-05 44.4 9.7 72 86-159 22-106 (524)
63 3u1f_A Methionyl-tRNA syntheta 90.2 0.28 9.7E-06 48.8 5.2 15 216-230 278-292 (542)
64 3c8z_A Cysteinyl-tRNA syntheta 88.6 2.2 7.7E-05 41.2 10.1 79 80-160 42-134 (414)
65 4arc_A Leucine--tRNA ligase; l 88.4 1.4 4.7E-05 47.2 9.1 73 78-150 54-140 (880)
66 1li5_A Cysrs, cysteinyl-tRNA s 88.3 1.1 3.6E-05 44.3 7.8 82 77-160 21-117 (461)
67 3kfl_A Methionyl-tRNA syntheta 87.3 0.45 1.5E-05 48.1 4.4 55 215-297 293-350 (564)
68 2x1l_A Methionyl-tRNA syntheta 87.2 0.18 6E-06 50.2 1.3 15 215-229 264-278 (524)
69 1gax_A Valrs, valyl-tRNA synth 86.3 1.7 5.9E-05 46.3 8.4 46 77-122 34-85 (862)
70 3sp1_A Cysteinyl-tRNA syntheta 86.2 3.8 0.00013 41.1 10.4 73 78-151 42-139 (501)
71 1wkb_A Leucyl-tRNA synthetase; 85.4 0.41 1.4E-05 50.4 3.0 60 215-298 602-662 (810)
72 3c8z_A Cysteinyl-tRNA syntheta 83.9 0.36 1.2E-05 46.9 1.8 65 209-297 237-302 (414)
73 1li5_A Cysrs, cysteinyl-tRNA s 83.2 0.53 1.8E-05 46.5 2.6 66 208-298 212-278 (461)
74 1wz2_A Leucyl-tRNA synthetase; 83.0 0.57 2E-05 50.4 3.0 59 215-297 602-661 (967)
75 1ffy_A Isoleucyl-tRNA syntheta 81.4 0.77 2.6E-05 49.3 3.2 56 214-297 546-606 (917)
76 4dlp_A Aminoacyl-tRNA syntheta 81.2 0.58 2E-05 46.7 2.1 14 216-229 276-289 (536)
77 2v0c_A Aminoacyl-tRNA syntheta 80.2 3.1 0.00011 44.4 7.4 73 78-150 34-120 (878)
78 3h99_A Methionyl-tRNA syntheta 79.7 0.72 2.5E-05 46.3 2.2 15 279-297 342-356 (560)
79 1ile_A Ilers, isoleucyl-tRNA s 78.9 0.98 3.4E-05 47.6 3.0 14 215-228 543-556 (821)
80 1gax_A Valrs, valyl-tRNA synth 78.6 0.78 2.7E-05 48.9 2.1 58 215-297 480-539 (862)
81 1ffy_A Isoleucyl-tRNA syntheta 77.4 3.5 0.00012 44.1 6.7 75 77-151 48-150 (917)
82 1wkb_A Leucyl-tRNA synthetase; 74.6 3.5 0.00012 43.3 5.7 45 78-122 35-85 (810)
83 1irx_A Lysyl-tRNA synthetase; 72.6 0.94 3.2E-05 45.2 0.8 59 214-297 228-290 (523)
84 3sp1_A Cysteinyl-tRNA syntheta 71.8 2 6.9E-05 43.1 2.9 32 207-238 244-276 (501)
85 1ile_A Ilers, isoleucyl-tRNA s 69.5 2 6.9E-05 45.2 2.5 46 77-122 38-89 (821)
86 2v0c_A Aminoacyl-tRNA syntheta 68.1 2.3 7.9E-05 45.3 2.6 25 215-239 530-555 (878)
87 4arc_A Leucine--tRNA ligase; l 61.3 4.9 0.00017 42.9 3.5 28 214-241 541-569 (880)
88 1wz2_A Leucyl-tRNA synthetase; 59.2 4.2 0.00014 43.8 2.5 46 77-122 34-85 (967)
89 3oqi_A YVMC, putative uncharac 51.8 48 0.0017 30.3 8.0 81 78-162 29-122 (257)
90 3foc_A Tryptophanyl-tRNA synth 49.8 3 0.0001 41.4 -0.5 17 216-232 221-249 (451)
91 3oqv_A ALBC; rossman fold, cyc 35.6 67 0.0023 29.2 6.2 84 77-162 28-124 (247)
92 1rqg_A Methionyl-tRNA syntheta 32.4 7.8 0.00027 40.3 -0.6 29 261-297 327-355 (722)
93 4erh_A Outer membrane protein 29.5 1.5E+02 0.0052 23.6 7.0 58 98-155 39-101 (148)
No 1
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1.8e-71 Score=544.20 Aligned_cols=225 Identities=52% Similarity=0.800 Sum_probs=206.4
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEccc
Q 020961 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd 159 (319)
+||||++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+||+
T Consensus 37 ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~qS~ 116 (388)
T 3prh_A 37 TIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSE 116 (388)
T ss_dssp EEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGGG
T ss_pred eEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEeccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHHH
Q 020961 160 VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAER 239 (319)
Q Consensus 160 ~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRdiA~r 239 (319)
|++|.|++|+|+|.+++++|+|+.+||++.+.. +++++|+|+||+|||||||+|++|+||||+||+||+|||||||+|
T Consensus 117 v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~r 194 (388)
T 3prh_A 117 VPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAER 194 (388)
T ss_dssp STHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999876553 578999999999999999999999999999999999999999999
Q ss_pred hhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCCC
Q 020961 240 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMNL 318 (319)
Q Consensus 240 ~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~~ 318 (319)
||+.||. +|.+|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+.
T Consensus 195 fn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~~ 261 (388)
T 3prh_A 195 FNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEGI 261 (388)
T ss_dssp HHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSCC
T ss_pred hCcccCC------------CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCCc
Confidence 9999974 488999999876689999988889999999987899999999999999999999998653
No 2
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=2.1e-71 Score=537.10 Aligned_cols=229 Identities=52% Similarity=0.838 Sum_probs=215.6
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
..++++|+|++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||
T Consensus 13 ~~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if 92 (346)
T 3n9i_A 13 SSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIF 92 (346)
T ss_dssp --CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred CCCCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 34679999999999999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred EcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHH
Q 020961 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (319)
Q Consensus 156 ~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRd 235 (319)
+||+|++|.+++|+|.|.+++++|+|+.+||++..+.+ +++++|+|+||+|||||||+|++|+||||+||+||+||+||
T Consensus 93 ~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRd 171 (346)
T 3n9i_A 93 VQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRD 171 (346)
T ss_dssp EGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHH
Confidence 99999999999999999999999999999999877653 57899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCC
Q 020961 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFL 315 (319)
Q Consensus 236 iA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~ 315 (319)
+|+|||+.||. +|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+
T Consensus 172 ia~rfn~~yg~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~ 239 (346)
T 3n9i_A 172 IASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDS 239 (346)
T ss_dssp HHHHHHHHHSS------------CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHhccccCC------------cccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCC
Confidence 99999999984 488999999866689999988989999999866699999999999999999999999
Q ss_pred CC
Q 020961 316 MN 317 (319)
Q Consensus 316 ~~ 317 (319)
.+
T Consensus 240 ~~ 241 (346)
T 3n9i_A 240 DE 241 (346)
T ss_dssp CS
T ss_pred CC
Confidence 75
No 3
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=1.3e-71 Score=537.72 Aligned_cols=230 Identities=47% Similarity=0.752 Sum_probs=216.1
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
+++||+|++|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHH
Q 020961 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRdiA 237 (319)
|+|++|.+|+|+|+|.+++++|+|+.+||++..+++ +++++|+|+||+|||||||+|++|+||||+||+||+||+||+|
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999887764 5789999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020961 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 238 ~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+|||+.||.+ ..+|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 165 ~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~ 235 (341)
T 3sz3_A 165 TRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAET 235 (341)
T ss_dssp HHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCS
T ss_pred HHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Confidence 9999999841 0148899999876458999998888899999987789999999999999999999999975
No 4
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=3.9e-68 Score=514.84 Aligned_cols=229 Identities=41% Similarity=0.618 Sum_probs=210.7
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
++++|+||+|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-----CCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHH
Q 020961 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-----~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieL 232 (319)
|++++|.+++|+++|.+++++|+|+.+||++.++.+ .+++++|+|+||+|||||||+|++|+||||+||+||+|+
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 999999999999999999999999999998765532 357899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccc
Q 020961 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFL 312 (319)
Q Consensus 233 aRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~ 312 (319)
+||+|+|||+.||. +|++|++++++.+++||||++|++|||||+++++|+|+|+|+|++|++|||+|+
T Consensus 164 ~Rdia~r~n~~yg~------------~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~ 231 (348)
T 2yy5_A 164 TRDLAQRIQKKFKL------------KLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQAT 231 (348)
T ss_dssp HHHHHHHHHHHHCC------------CCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhccc------------ccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCC
Confidence 99999999999984 488899999765589999977678999999854459999999999999999999
Q ss_pred cCCCCC
Q 020961 313 TFLMNL 318 (319)
Q Consensus 313 Td~~~~ 318 (319)
||+.+.
T Consensus 232 td~~~~ 237 (348)
T 2yy5_A 232 TDSFNK 237 (348)
T ss_dssp CCSSCC
T ss_pred CCCccc
Confidence 999753
No 5
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=2.4e-67 Score=505.67 Aligned_cols=226 Identities=51% Similarity=0.789 Sum_probs=210.5
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcc
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QS 158 (319)
+++|+||+|||.+|||||+|++++|++||++++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHHH
Q 020961 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (319)
Q Consensus 159 d~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRdiA~ 238 (319)
+|++|.+++|+++|.+++++|+|+.+||++..+ + +++++|+|+||+||||||++|++|+||||+||++|+|++||||+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999988755 3 67899999999999999999999999999999999999999999
Q ss_pred HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCCC
Q 020961 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMNL 318 (319)
Q Consensus 239 r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~~ 318 (319)
|||+.||. +|++|++++++.+++||||++|++|||||.++..|+|+|+|+|++|++|||+|+|||.+.
T Consensus 160 r~n~~yg~------------~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~ 227 (328)
T 1i6k_A 160 RFNKRYGE------------LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227 (328)
T ss_dssp HHHHHHCS------------CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred HhCccccc------------ccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccc
Confidence 99999984 488999999755589999966678999999732234999999999999999999999753
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=6.7e-67 Score=501.54 Aligned_cols=221 Identities=38% Similarity=0.659 Sum_probs=207.1
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEc
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~Q 157 (319)
..++|+||+|||.+|||||+|++++|++||++++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 45899999999999999999989999999999999999999999999889999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHHHHH
Q 020961 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (319)
Q Consensus 158 Sd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaRdiA 237 (319)
|+|++|.+++|.++|.+++++|+|+.+||++..+. +++++|+|+||+|||||||+|++|+||||.||+||+|++||+|
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999876542 5799999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020961 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 238 ~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+|||+.||. +|++|+.++...+++|||| +| +|||||++ |+|+|+|+|++|++|||+|+||+..
T Consensus 161 ~r~n~~~g~------------~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~~a~td~~~ 223 (322)
T 3tzl_A 161 LKVNNEWGE------------IFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQISSIVTDSTA 223 (322)
T ss_dssp HHHHHHHCS------------CSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHHTCCCCCCC
T ss_pred HHhcccccC------------CCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHHhccCCCcc
Confidence 999999973 4889999886545899999 77 89999995 6899999999999999999999764
No 7
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=1.3e-65 Score=497.84 Aligned_cols=224 Identities=32% Similarity=0.468 Sum_probs=209.6
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020961 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+.++++|+||+|||.+|||||+|++++|++||+.++++|+|||+||+++ +.+++++++++++++++|+|+|+||+|++|
T Consensus 20 ~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i 99 (351)
T 1yi8_B 20 PARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTC 99 (351)
T ss_dssp -CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEE
T ss_pred CCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 5689999999999999999999999999999999999999999999998 789999999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHH
Q 020961 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (319)
Q Consensus 155 f~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLa 233 (319)
|+||+|++|.++.|.|+|.+++++|+|+.+||++..+.+ .+++++|+|+||+||||||++|++|+||||+||++|++++
T Consensus 100 ~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~ 179 (351)
T 1yi8_B 100 VVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQT 179 (351)
T ss_dssp EEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred EEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHH
Confidence 999999999999999999999999999999999887653 3678999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcccc
Q 020961 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLT 313 (319)
Q Consensus 234 RdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~T 313 (319)
||||+|||+.||. +|++|+++++.. ++|||| ||++|||||.+ |+|+|+|+|++|++||++|+|
T Consensus 180 rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~t 242 (351)
T 1yi8_B 180 REIVRRFNALYAP------------VLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIALGDSADEVARKVMGMYT 242 (351)
T ss_dssp HHHHHHHHHHTCS------------CSCCCEEEECSS-CSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhccc------------ccCCCeeeeecC-ccccCC-CCccccCCCCC---CeecCCCCHHHHHHHHHhcCC
Confidence 9999999999873 378899887533 899999 88779999986 599999999999999999999
Q ss_pred CCC
Q 020961 314 FLM 316 (319)
Q Consensus 314 d~~ 316 (319)
|+.
T Consensus 243 d~~ 245 (351)
T 1yi8_B 243 DPG 245 (351)
T ss_dssp CTT
T ss_pred Ccc
Confidence 984
No 8
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-64 Score=488.25 Aligned_cols=221 Identities=48% Similarity=0.810 Sum_probs=205.8
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-c-CcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g-~~~~ilIaDlhA~t~~--~~~~~l~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+++|+||+|||.+|||||+|++++|++||+ | ++++|+|||+||++++ .+++++++++++++++|+|+|+||+|++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 589999999999999999999999999998 6 9999999999999997 79999999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHHHHH
Q 020961 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (319)
Q Consensus 155 f~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hieLaR 234 (319)
|+||+|++|.+++|+++|.+++++|+|+.+||++.+. .+++++|+|+||+||||||++|++|+||||+||++|++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999986543 35799999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhccccC
Q 020961 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRFLTF 314 (319)
Q Consensus 235 diA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td 314 (319)
|+|+|||+.||. +|++|+++++..+++|||| ||++|||||.+ |+|+|+|+|++|++||++|+||
T Consensus 160 dla~r~n~~~g~------------~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~td 223 (337)
T 2el7_A 160 EIARRFNHLFGE------------TFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223 (337)
T ss_dssp HHHHHHHHHHSS------------CCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhcCc------------ccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHHHHHhCCCC
Confidence 999999999984 3788999998655799999 56789999986 5999999999999999999999
Q ss_pred CCC
Q 020961 315 LMN 317 (319)
Q Consensus 315 ~~~ 317 (319)
+.+
T Consensus 224 ~~~ 226 (337)
T 2el7_A 224 PQR 226 (337)
T ss_dssp C--
T ss_pred Ccc
Confidence 844
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-64 Score=485.99 Aligned_cols=221 Identities=40% Similarity=0.655 Sum_probs=202.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
..+++|+|++|||.+|||||+|++++|++||+ |++++|+|||+||+|+ +.|++++++++++++++|+|+|+||+|++|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 36899999999999999999999999999998 6999999999999998 778889999999999999999999999999
Q ss_pred EEcccchhhhHHHHHHhccCCHHHHhchhcHHH---HHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHH
Q 020961 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (319)
Q Consensus 155 f~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~---~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hie 231 (319)
|+||+|++|.++.|.|+|.+++++|+|+.+||+ +.+. .+++++|+|+||+||||||++|++|+||||+||+||++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 999999999999999999999999999999998 5432 25689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcc
Q 020961 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRF 311 (319)
Q Consensus 232 LaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A 311 (319)
++||+|+|||+.||. +|++|++++... ++|||| +|. |||||.+ |+|+|+|+|++|++||++|
T Consensus 169 l~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~i~~Ki~~a 230 (340)
T 2g36_A 169 LTREIARRFNYLYDE------------VFPEPEAILSRV-PKLPGT-DGR-KMSKSYG---NIINLEISEKELEQTILRM 230 (340)
T ss_dssp HHHHHHHHHHHHSCC------------CCCCCEEEECCS-CCCCCT-TSS-CCCGGGT---CCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhccc------------ccCCchhhhccc-cccCCC-Ccc-ccCCCCC---CeEeeeCCHHHHHHHHHhC
Confidence 999999999999873 388899877543 899999 674 9999985 6899999999999999999
Q ss_pred ccCCCC
Q 020961 312 LTFLMN 317 (319)
Q Consensus 312 ~Td~~~ 317 (319)
+||+.+
T Consensus 231 ~td~~~ 236 (340)
T 2g36_A 231 MTDPAR 236 (340)
T ss_dssp CCCTTC
T ss_pred CCCccc
Confidence 999854
No 10
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=8.3e-59 Score=453.25 Aligned_cols=216 Identities=21% Similarity=0.265 Sum_probs=192.1
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~k~ 152 (319)
+++++|+||+|||.+||||++....+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 55 ~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~ 134 (373)
T 3vgj_A 55 RKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENV 134 (373)
T ss_dssp SSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTE
T ss_pred CCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 47899999999999999996544457899999 89999999999999983 589999999999999999999999999
Q ss_pred EEEEcccch-hhhHHHHHHh----ccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcch
Q 020961 153 SVFVQSHVR-AHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (319)
Q Consensus 153 ~if~QSd~~-~~~el~w~L~----~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~ 227 (319)
+||+||+|+ +|.+++|.+. ..++++|+.++.+|+.+. ..+++++|+|+||+||||||++|++|+||||.||+
T Consensus 135 ~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~---~~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~ 211 (373)
T 3vgj_A 135 QFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS---EGEENYCSQILYPCMQCADIFFLNVDICQLGIDQR 211 (373)
T ss_dssp EEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC---TTSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh---ccCCCChHHHHHHHHHHhcccccCCcEEEcchhhH
Confidence 999999998 8999999765 478999999998887432 22578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHh
Q 020961 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKF 307 (319)
Q Consensus 228 ~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 307 (319)
+|++++||+|+|||+.|+ |..+.+ ++||||+||++|||||+| +|+|+|+|+|++|++|
T Consensus 212 ~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~~K 269 (373)
T 3vgj_A 212 KVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFMDDSESDVNRK 269 (373)
T ss_dssp HHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeecCCCHHHHHHH
Confidence 999999999999996542 555554 679999899889999997 5899999999999999
Q ss_pred hhccccCCCC
Q 020961 308 FRRFLTFLMN 317 (319)
Q Consensus 308 I~~A~Td~~~ 317 (319)
||+|+||+.+
T Consensus 270 I~kA~td~~~ 279 (373)
T 3vgj_A 270 IKKAYCPPNV 279 (373)
T ss_dssp HHHSCCCTTC
T ss_pred HHhCcCCCCC
Confidence 9999999853
No 11
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.7e-59 Score=458.38 Aligned_cols=219 Identities=21% Similarity=0.284 Sum_probs=195.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHH-HHHH----HHHHHcCC
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACGI 147 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~---~~~~~l~~~~-~~~~----~~~lA~Gl 147 (319)
+++++|+||+|||.+|||||++++.+|++||+ |++++|+|||+||++++ .+++++++++ ++++ ++|+|+|+
T Consensus 32 ~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~ 111 (375)
T 2cyc_A 32 APLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGG 111 (375)
T ss_dssp CCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred CCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999999999998 79999999999999985 3899999999 8898 99999999
Q ss_pred CCCCcEEEEcccchhhhHHHHHH----hccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEec
Q 020961 148 DNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 223 (319)
Q Consensus 148 Dp~k~~if~QSd~~~~~el~w~L----~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG 223 (319)
||+|++||+||+|++|. ++|.+ ++.++++|+.|+.+||++. ..+++++|+|+||+||||||++|++|+||||
T Consensus 112 dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~---~~~~i~~g~f~YP~LQaaDil~~~~~~vp~G 187 (375)
T 2cyc_A 112 DPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ---MGEAIDFAKLIYPMMQVADIFYQGVTIAHAG 187 (375)
T ss_dssp CGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC---CCTTCBTHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc---cCCCCChHHHHHHHHHHHHHHHhCCCeeccc
Confidence 99999999999999988 88987 8999999999999998643 2356899999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhh---hh-CCccccccCCCCCccccCCccccCCCCcccccCCCC----------------CCc
Q 020961 224 EDQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LSK 283 (319)
Q Consensus 224 ~DQ~~hieLaRdiA~r~n~---~y-g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg----------------~~K 283 (319)
.||++|++++||+|+|||+ .| |.. | .|..+.+ ++||||++| ++|
T Consensus 188 ~DQ~~~i~l~rdla~r~n~~~~~~~g~~------------~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~~~~~~~K 251 (375)
T 2cyc_A 188 MDQRKAHVIAIEVAQKLRYHPIVHEGEK------------L-KPVAVHH---HLLLGLQEPPKWPIESEEEFKEIKAQMK 251 (375)
T ss_dssp GGGHHHHHHHHHHGGGCSSSCEEETTEE------------E-CCEEEEE---CCCBCSSCCSSSSCCSHHHHHHHHHHHB
T ss_pred chHHHHHHHHHHHHHHhCCccccccccc------------C-ccEEecc---ccccCCCCcccccccchhhhhhhhhhhc
Confidence 9999999999999999997 12 210 1 4655554 789999543 489
Q ss_pred CCCCCCCCCCeeecCCCHHHHHHhhhccccCCCC
Q 020961 284 MSKSAPSDQSRINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 284 MSKS~p~~~s~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
||||.| +|+|+|+|+|++|++|||+|+|||.+
T Consensus 252 MSKS~~--~~~I~L~d~p~~i~~KI~~A~t~~~~ 283 (375)
T 2cyc_A 252 MSKSKP--YSAVFIHDSPEEIRQKLRKAFCPARE 283 (375)
T ss_dssp GGGSCG--GGSCBTTCCHHHHHHHHHHSCCCTTC
T ss_pred ccCCCC--CCeeccCCCHHHHHHHHHHhcCCCCC
Confidence 999997 48999999999999999999999854
No 12
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.5e-59 Score=457.42 Aligned_cols=209 Identities=21% Similarity=0.283 Sum_probs=186.1
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 020961 76 SVKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGhylg~l-~~~~~lQ~--g~~~~ilIaDlhA~t~~--~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (319)
.+++++|+|++|||.+|||||++++ .+| ||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+||+
T Consensus 71 ~~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 148 (392)
T 3jxe_A 71 GRGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPD 148 (392)
T ss_dssp TCCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCcc
Confidence 3578999999999999999999986 788 786 78899999999999873 6999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhcc-CCCEEEecCcchHH
Q 020961 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQH 229 (319)
Q Consensus 151 k~~if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~-~adivpvG~DQ~~h 229 (319)
|++||+||+|+++.++.|.|++.+++++++++.+|+ +++++|+|+||+|||||||++ ++|+||||+||+||
T Consensus 149 kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~h 220 (392)
T 3jxe_A 149 KTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPY 220 (392)
T ss_dssp SEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHH
T ss_pred ceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHH
Confidence 999999999999999999999999999998886653 568999999999999999999 69999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020961 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 230 ieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
++++||+|+||| +++|+++++ ++||||+++++|||||+| +|+|+|+|+|++|++|||
T Consensus 221 l~l~Rdla~r~n------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--ns~I~L~D~p~~I~kKI~ 277 (392)
T 3jxe_A 221 WRLQRDFAESLG------------------YYKTAALHS---KFVPSLTSLSGKMSASKP--ETAIYLTDSPEDVEKKVW 277 (392)
T ss_dssp HHHHHHHTGGGT------------------SCCCEEEEE---CCCCCSSCSSSCCCTTSG--GGCCBTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcC------------------CCCCeeeec---ccccCCCCCccccccCCC--CCeeeCCCCHHHHHHHHH
Confidence 999999999999 346888876 679999544469999997 479999999999999999
Q ss_pred c-cccCCCC
Q 020961 310 R-FLTFLMN 317 (319)
Q Consensus 310 ~-A~Td~~~ 317 (319)
+ |+||+..
T Consensus 278 k~A~td~~~ 286 (392)
T 3jxe_A 278 KFTLTGGRP 286 (392)
T ss_dssp TCC------
T ss_pred hhccCCCCc
Confidence 9 9999863
No 13
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=3.7e-59 Score=452.01 Aligned_cols=213 Identities=21% Similarity=0.239 Sum_probs=180.0
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC---CHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~---~~~~l~~~~~~~~~~~lA~GlDp~k~ 152 (319)
+++++|+||+|||.+|||||++.+.+|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~ 118 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT 118 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccce
Confidence 47899999999999999999998999999999 799999999999999853 89999999999999999999999999
Q ss_pred EEEEcccc-hhhhHHHHHHhc----cCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhcc---CCCEEEecC
Q 020961 153 SVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVGE 224 (319)
Q Consensus 153 ~if~QSd~-~~~~el~w~L~~----~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~---~adivpvG~ 224 (319)
+||+||+| ++|. ++|.+.+ .++++++.++.+++.+. +.+++++|+|+||+||||||++| ++|+||||.
T Consensus 119 ~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~---~~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G~ 194 (348)
T 2j5b_A 119 RFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGI 194 (348)
T ss_dssp EEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCBG
T ss_pred EEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh---ccCCcChHHHhhHHHHHHHHHHHhcCCCcEEEecc
Confidence 99999998 5566 8998765 88888888888776532 22568999999999999999999 999999999
Q ss_pred cchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHH
Q 020961 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVS 304 (319)
Q Consensus 225 DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I 304 (319)
||++|++++||+|+|||+.| |..+.+ ++||||+||++|||||.| +|+|+|+|+|++|
T Consensus 195 DQ~~~i~l~Rdia~r~~~~~------------------p~~~~~---~~l~gL~dg~~KMSKS~~--~~~I~L~d~p~~i 251 (348)
T 2j5b_A 195 DQRKVNMLAIEYANDRGLKI------------------PISLSH---HMLMSLSGPKKKMSKSDP--QGAIFMDDTEQEV 251 (348)
T ss_dssp GGHHHHHHHHHHHHHTTCCC------------------CEEEEB---CCCCCTTCSSCCCSTTCG--GGSCBTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCC------------------ceeecC---ccccCCCCcccccccCCC--CCeEeecCCHHHH
Confidence 99999999999999999542 555544 789999888889999997 4899999999999
Q ss_pred HHhhhccccCCC
Q 020961 305 HKFFRRFLTFLM 316 (319)
Q Consensus 305 ~kKI~~A~Td~~ 316 (319)
++|||+|+|||.
T Consensus 252 ~kKI~ka~td~~ 263 (348)
T 2j5b_A 252 SEKISRAYCTDE 263 (348)
T ss_dssp HHHHHHSCCCSS
T ss_pred HHHHhcccCCCC
Confidence 999999999996
No 14
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=5.3e-59 Score=453.33 Aligned_cols=214 Identities=20% Similarity=0.280 Sum_probs=188.8
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~k~ 152 (319)
+++++|+||+|||.+|||| ++++.+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~ 112 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV 112 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 4789999999999999999 778999999999 79999999999999985 699999999999999999999999999
Q ss_pred EEEEcccchhhhHHHHH----HhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchH
Q 020961 153 SVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (319)
Q Consensus 153 ~if~QSd~~~~~el~w~----L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~ 228 (319)
+||+||+|+++ +++|. ++|.+++++|.|+.+|+++.. ++.++++|+|+||+||||||++|++|+||||.||++
T Consensus 113 ~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~ 189 (364)
T 2cya_A 113 RFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRK 189 (364)
T ss_dssp EEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHH
T ss_pred EEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHHH
Confidence 99999999988 67787 999999999999999987543 223588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCC---------------CCCcCCCCCCCCCC
Q 020961 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMSKSAPSDQS 293 (319)
Q Consensus 229 hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~d---------------g~~KMSKS~p~~~s 293 (319)
|++++||+|+|||+ +.|..++. ++||||++ |++|||||++ +|
T Consensus 190 ~~~l~rdla~r~~~------------------~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~--~~ 246 (364)
T 2cya_A 190 AHMLARDVAEKLGR------------------KKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP--ET 246 (364)
T ss_dssp HHHHHHHHHTTTTC------------------CCCEEEEE---CCCBCSSCC----------------CBCCSSSG--GG
T ss_pred HHHHHHHHHHHcCC------------------CCceeecc---ceeeCCCcccccccccccccccccccccCCCCC--CC
Confidence 99999999999993 34777665 67999954 3689999987 59
Q ss_pred eeecCCCHHHHHHhhhccccCCCC
Q 020961 294 RINLLDPKDVSHKFFRRFLTFLMN 317 (319)
Q Consensus 294 ~I~L~Dspe~I~kKI~~A~Td~~~ 317 (319)
+|+|+|+|++|++|||+|+||+.+
T Consensus 247 ~I~L~d~p~~i~~Ki~~a~td~~~ 270 (364)
T 2cya_A 247 AVFVVDSDDDIRRKIRKAYCPAKQ 270 (364)
T ss_dssp SCBTTCCHHHHHHHHHTSCCCTTC
T ss_pred EeeccCCHHHHHHHHHhCcCCCCC
Confidence 999999999999999999999964
No 15
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=3.9e-58 Score=448.37 Aligned_cols=208 Identities=29% Similarity=0.401 Sum_probs=186.4
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKAS 153 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~--~~~~l~~~~~~~~~~~lA~GlDp~k~~ 153 (319)
++++||||++|||.+|||||+++ .+|..+|+ +++++|+||||||+|++. +++.+++++++++++|+||||||+|++
T Consensus 69 k~~~v~sG~~PTG~lHLGhyv~~-~~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~ 147 (372)
T 3a04_A 69 ERVAVLTGFMPSGKFHFGHKLTV-DQLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE 147 (372)
T ss_dssp CCCEEEEEECCCSCCBHHHHHHH-HHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE
T ss_pred CCCEEEeCcCCCcHhHHHHHHHH-HHHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc
Confidence 58899999999999999999986 56667775 899999999999999854 567799999999999999999999999
Q ss_pred EEEccc-chhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhc--------cCCCEEEecC
Q 020961 154 VFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVGE 224 (319)
Q Consensus 154 if~QSd-~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~--------~~adivpvG~ 224 (319)
||+||+ ..++.++.|.+++.+++++++++.+ ..+.|.++||+|||||||+ |++++||||+
T Consensus 148 if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG~ 216 (372)
T 3a04_A 148 FYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGA 216 (372)
T ss_dssp EEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEEG
T ss_pred hhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccch
Confidence 999999 4678999999999999999877632 3578999999999999999 5566999999
Q ss_pred cchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHH
Q 020961 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVS 304 (319)
Q Consensus 225 DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I 304 (319)
||+||+|||||||+|||+.|+ ++.|..+++ +++||| +| .|||||+| +|+|+|+|+|++|
T Consensus 217 DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~---~~~pgl-dG-~KmS~S~~--ns~I~l~D~p~~i 275 (372)
T 3a04_A 217 DQDPHLRLTRDLADRMAGVVE--------------LERPASTYH---KLQPGL-DG-RKMSSSRP--DSTIFLTDPPEVA 275 (372)
T ss_dssp GGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEE---CCCBCT-TS-SBCCTTSG--GGSCBTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHhcCccc--------------ccChhhhhh---cccCCC-CC-CccCCCCC--CcccccCCCHHHH
Confidence 999999999999999998775 567888887 569999 67 79999997 5999999999999
Q ss_pred HHhhhccccCCCC
Q 020961 305 HKFFRRFLTFLMN 317 (319)
Q Consensus 305 ~kKI~~A~Td~~~ 317 (319)
++|||+|+||+..
T Consensus 276 ~kKI~ka~td~~~ 288 (372)
T 3a04_A 276 RNKLFRALTGGRA 288 (372)
T ss_dssp HHHHHTCCCSCCS
T ss_pred HHHHhcCccCCCC
Confidence 9999999999864
No 16
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=6.6e-55 Score=453.49 Aligned_cols=215 Identities=22% Similarity=0.330 Sum_probs=186.9
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCCc
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~---~~~~~l~~~~~~~~~~~lA~GlDp~k~ 152 (319)
+++++|+||+|||.+||||++....+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 118 (690)
T 3p0j_A 39 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 118 (690)
T ss_dssp TTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHe
Confidence 47899999999999999997654447889998 79999999999999973 588999999999999999999999999
Q ss_pred EEEEccc-chhhhHHHHHH----hccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcch
Q 020961 153 SVFVQSH-VRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (319)
Q Consensus 153 ~if~QSd-~~~~~el~w~L----~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~ 227 (319)
+||+||+ +++|.+++|.+ ++.++++||.++.+++.+. . +++++|+|+||+||||||++|++|+||||.||+
T Consensus 119 ~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~---~-~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~ 194 (690)
T 3p0j_A 119 LFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKT---E-GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQR 194 (690)
T ss_dssp EEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhc---c-CCCchhhHhhHHHHHHHHHhhCCCEEeccccHH
Confidence 9999999 57899999986 4589999999999988542 2 248999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHh
Q 020961 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKF 307 (319)
Q Consensus 228 ~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 307 (319)
||++++||+|+|||+.|+ |..+.. ++||||+||++|||||.+ +|+|+|+|+|++|++|
T Consensus 195 ~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~kK 252 (690)
T 3p0j_A 195 KVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARK 252 (690)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBG--GGSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCC--CCeeeccCCHHHHHHH
Confidence 999999999999996542 445544 679999889889999996 4899999999999999
Q ss_pred hhccccCCCC
Q 020961 308 FRRFLTFLMN 317 (319)
Q Consensus 308 I~~A~Td~~~ 317 (319)
||+|+||+..
T Consensus 253 I~~A~td~~~ 262 (690)
T 3p0j_A 253 IRQAYCPRVK 262 (690)
T ss_dssp HHTSCCCSSC
T ss_pred HHhCcCCCcc
Confidence 9999999754
No 17
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.7e-54 Score=414.99 Aligned_cols=210 Identities=25% Similarity=0.366 Sum_probs=189.3
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCCcEE
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 154 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~-~~~~l~~~~~~~~~~~lA~GlDp~k~~i 154 (319)
+++++|+||+|||.+||||+ +++.+|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+||+|++|
T Consensus 31 ~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i 109 (323)
T 2cyb_A 31 EKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKF 109 (323)
T ss_dssp SCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEE
T ss_pred CCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 46799999999999999986 66899999999 899999999999999965 9999999999999999999999999999
Q ss_pred EEcccch---hhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHHHH
Q 020961 155 FVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (319)
Q Consensus 155 f~QSd~~---~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~hie 231 (319)
|+||+|+ ++.++.|.++|.++++++.|+.+++. +. . +..++|+|.||+||||||+++++|+||||.||++|++
T Consensus 110 ~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~--~~-~-~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~ 185 (323)
T 2cyb_A 110 VLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVS--RR-K-EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHM 185 (323)
T ss_dssp EEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTC--SC-S-SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred EEcchhccchHHHHHHHHHhCccCHHHHhccchhhc--cc-c-CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHH
Confidence 9999996 78899999999999999999876542 11 1 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhcc
Q 020961 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRRF 311 (319)
Q Consensus 232 LaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~A 311 (319)
++||+|++||+ +.|..++. ++||+| +| +||||| + +|+|+|+|+|++|++||++|
T Consensus 186 l~rdla~~~~~------------------~~p~~l~~---pll~~l-~G-~KMSKS-~--~n~I~l~d~p~~i~~Ki~~a 239 (323)
T 2cyb_A 186 LARENLPRLGY------------------SSPVCLHT---PILVGL-DG-QKMSSS-K--GNYISVRDPPEEVERKIRKA 239 (323)
T ss_dssp HHHHHGGGGTC------------------CCCEEEEE---CCCBCT-TS-SBCCTT-T--TCSCBTTCCHHHHHHHHHTS
T ss_pred HHHHHHHhcCC------------------CCceEEec---CcccCC-CC-CcccCC-c--CceeCCCCCHHHHHHHHHhc
Confidence 99999999983 24666665 679999 67 899999 4 69999999999999999999
Q ss_pred ccCCCC
Q 020961 312 LTFLMN 317 (319)
Q Consensus 312 ~Td~~~ 317 (319)
+||+.+
T Consensus 240 ~td~~~ 245 (323)
T 2cyb_A 240 YCPAGV 245 (323)
T ss_dssp CCCTTC
T ss_pred CCCCCC
Confidence 999853
No 18
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=2.2e-54 Score=423.41 Aligned_cols=207 Identities=16% Similarity=0.182 Sum_probs=183.4
Q ss_pred CCCceEEEeeCCCCcchhhhHHHH-HHHHHHHhc--cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 020961 76 SVKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGhylg~-l~~~~~lQ~--g~~~~ilIaDlhA~t~~-~~~~~l~~~~~~~~~~~lA~GlDp~k 151 (319)
.+++++|+||+|||.+|||||+++ +.+| ||+ ++.++|+|+|+|+++.+ .+++++++++++++++|+|+|+||+|
T Consensus 80 ~~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~k 157 (386)
T 3hzr_A 80 KKPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDK 157 (386)
T ss_dssp TCCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGG
T ss_pred CCCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 357899999999999999999998 5888 887 57788999999999984 79999999999999999999999999
Q ss_pred cEEEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhh--------ccC-CCEEE
Q 020961 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQ-SDFVP 221 (319)
Q Consensus 152 ~~if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl--------~~~-adivp 221 (319)
++||+||+|++ .+...+.+|.|+++|+++.++++ .+++++|+|+||+|||||++ .++ +|+||
T Consensus 158 t~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vp 229 (386)
T 3hzr_A 158 TFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVL 229 (386)
T ss_dssp EEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEE
T ss_pred eEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCccccc
Confidence 99999999976 34556788999999999988776 46799999999999999877 355 99999
Q ss_pred ecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCH
Q 020961 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 301 (319)
Q Consensus 222 vG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dsp 301 (319)
||+||+||++++||+|+||| +++|..+.+ ++|||| +|.+|||||++ +|+|+|+|+|
T Consensus 230 vG~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~I~L~D~p 285 (386)
T 3hzr_A 230 DSIKNVQFHSIIDQIATTLN------------------FIQPTVLFH---KMVPLL-SGVTKFDIPSD--HNSILLSDNA 285 (386)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TCTTCCCCCCT--TTSCBTTCCH
T ss_pred cccchHHHHHHHHHHHHHcC------------------CCCceEeec---CeeeCC-CCCCccCcCCC--CCeeecCCCH
Confidence 99999999999999999999 345765643 789999 66569999987 6999999999
Q ss_pred HHHHHhhhc-cccCCC
Q 020961 302 DVSHKFFRR-FLTFLM 316 (319)
Q Consensus 302 e~I~kKI~~-A~Td~~ 316 (319)
++|++|||+ |+||+.
T Consensus 286 ~~i~kKI~k~A~t~g~ 301 (386)
T 3hzr_A 286 KQVERKINKLAFSGGR 301 (386)
T ss_dssp HHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHhccCCCC
Confidence 999999999 988864
No 19
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.6e-54 Score=423.40 Aligned_cols=208 Identities=19% Similarity=0.230 Sum_probs=184.3
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHH-HHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 020961 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 76 ~~~~~i~tGi~PTG-~lHLGhylg~-l~~~~~lQ~--g~~~~ilIaDlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (319)
.+++++|+|++||| .+|||||+++ +.+| ||+ ++.++|+|||+||+++ +.+++++++++++++++|+|+|+||+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 176 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPK 176 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 35889999999999 7999999998 4788 887 6778999999999875 67999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhh--------ccCCCEEE
Q 020961 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVP 221 (319)
Q Consensus 151 k~~if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl--------~~~adivp 221 (319)
|++||.||+|++ .+...+.+|.|+++|+++.++++ .+++++|+|+||+|||||++ .+++|+||
T Consensus 177 k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvp 248 (406)
T 3tze_A 177 LTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVP 248 (406)
T ss_dssp GEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEE
T ss_pred ceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEe
Confidence 999999999976 23345678999999999988876 46799999999999999955 46799999
Q ss_pred ecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-CcCCCCCCCCCCeeecCCC
Q 020961 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINLLDP 300 (319)
Q Consensus 222 vG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~-~KMSKS~p~~~s~I~L~Ds 300 (319)
||+||++|++++||+|+||| +++|..+.+ ++|||| ||. +|||||.| +|+|+|+|+
T Consensus 249 vG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~~I~L~D~ 304 (406)
T 3tze_A 249 AAVDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NSSIYLDDA 304 (406)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GGSCBTTCC
T ss_pred eccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCcccCCCC
Confidence 99999999999999999998 446877765 789999 665 69999997 599999999
Q ss_pred HHHHHHhhhc-cccCCCC
Q 020961 301 KDVSHKFFRR-FLTFLMN 317 (319)
Q Consensus 301 pe~I~kKI~~-A~Td~~~ 317 (319)
|++|++|||+ |+||+..
T Consensus 305 p~~I~kKI~k~A~td~~~ 322 (406)
T 3tze_A 305 QDTIRKKIIAYAYSGGRK 322 (406)
T ss_dssp HHHHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHhhccCCCcc
Confidence 9999999999 9999864
No 20
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=2.1e-53 Score=414.93 Aligned_cols=212 Identities=24% Similarity=0.189 Sum_probs=176.0
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHH---H--HHHHHHHcCCCCC
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS 150 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~-~~~~~~l~~~~~---~--~~~~~lA~GlDp~ 150 (319)
+++++|+||+|||.+|||||++++..|..+|.|++++|+|||+||+|+ +.+++++.++.. + +.+.|+|+|+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999998888877779999999999999997 667777655443 2 3345799999999
Q ss_pred CcEEEEcccch---hhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcch
Q 020961 151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (319)
Q Consensus 151 k~~if~QSd~~---~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~ 227 (319)
++.||+||+|+ ++.++.|.++|.+++.+++|+.. .+ .+. .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~--~v-~~~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGA--EV-VKQ-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTT--TT-SCC-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchh--hh-hcc-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999996 67888899999999999988632 01 112 2568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHh
Q 020961 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKF 307 (319)
Q Consensus 228 ~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 307 (319)
+|++++||++++|+ ++.|..++. ++||+| +| +|||||.+ +++|+|+|+|++|++|
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-dG-~KMSKS~~--ns~I~L~d~p~~i~kK 244 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMN---PMVPGL-TG-SKMSSSEE--ESKIDLLDRKEDVKKK 244 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCS-SC-C---------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---CccCCC-Cc-ccccCCCC--CCeEeccCCHHHHHHH
Confidence 99999999999997 335777775 679999 67 79999997 4699999999999999
Q ss_pred hhccccCCCC
Q 020961 308 FRRFLTFLMN 317 (319)
Q Consensus 308 I~~A~Td~~~ 317 (319)
||+|+||+.+
T Consensus 245 i~~A~td~~~ 254 (372)
T 1n3l_A 245 LKKAFCEPGN 254 (372)
T ss_dssp HHTCCCCTTC
T ss_pred HHHccCCCCC
Confidence 9999999976
No 21
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=2.9e-53 Score=405.53 Aligned_cols=204 Identities=23% Similarity=0.275 Sum_probs=180.9
Q ss_pred CCCceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCCcE
Q 020961 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKAS 153 (319)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~-~~~~~l~~~~~~~~~~~lA~GlDp~k~~ 153 (319)
.+++++|+||+|||.+|||| ++++.+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+| ++
T Consensus 26 ~~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~ 101 (314)
T 2zp1_A 26 KDEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AK 101 (314)
T ss_dssp SSSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CE
T ss_pred CCCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eE
Confidence 34789999999999999999 778899999998 79999999999999985 48999999999999999999998 78
Q ss_pred EEEcccchhhhHHHHH----HhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcchHH
Q 020961 154 VFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (319)
Q Consensus 154 if~QSd~~~~~el~w~----L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~~h 229 (319)
|++||+|+++ +.+|. ++|.+++++|.|+.+|+++. . +..++|+|+||+||||||++|++|+||||+||++|
T Consensus 102 ~~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~---~-~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~ 176 (314)
T 2zp1_A 102 YVYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE---D-ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKI 176 (314)
T ss_dssp EEEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC---C-SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred EEECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc---c-CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHH
Confidence 9999999866 44555 99999999999999987542 2 23499999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhh
Q 020961 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFR 309 (319)
Q Consensus 230 ieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~ 309 (319)
++|+|++++ . .|..+.. ++||+| +|.+||||| + +|+|+|+|+|++|++|||
T Consensus 177 ~~l~R~i~~--~--------------------~~~~~~~---~~l~~l-~G~~KMSKS-~--~~~I~L~d~~~~i~~KI~ 227 (314)
T 2zp1_A 177 HMLARELLP--K--------------------KVVCIHN---PVLTGL-DGEGKMSSS-K--GNFIAVDDSPEEIRAKIK 227 (314)
T ss_dssp HHHHHHHSS--S--------------------CCEEEEE---CCCBCT-TSSSBCCTT-T--TCSCBTTCCHHHHHHHHH
T ss_pred HHHHHHhcC--C--------------------CcEEeec---cccccC-CcccccCCC-C--cceecCCCCHHHHHHHHH
Confidence 999999875 1 2555554 689999 587899999 4 689999999999999999
Q ss_pred ccccCCCC
Q 020961 310 RFLTFLMN 317 (319)
Q Consensus 310 ~A~Td~~~ 317 (319)
+|+||+.+
T Consensus 228 ~a~td~~~ 235 (314)
T 2zp1_A 228 KAYCPAGV 235 (314)
T ss_dssp HSCCCTTC
T ss_pred hCCCCCCC
Confidence 99999963
No 22
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=4e-53 Score=405.89 Aligned_cols=207 Identities=15% Similarity=0.171 Sum_probs=183.9
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHH---HHHHHH
Q 020961 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAAI 141 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~l~~~~---~~~~~~ 141 (319)
+++++|+||+|||. +|||||++ +.+|++||+ |++++|+|||+||+++ |. +++++++|+ ++.++.
T Consensus 32 ~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~ 110 (322)
T 2yxn_A 32 GPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAP 110 (322)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999995 789999998 7999999999999998 43 899999999 788888
Q ss_pred HHHcCCCCCCcEEEEcccchhh-hHHHHH--HhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhcc---
Q 020961 142 YLACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (319)
Q Consensus 142 ~lA~GlDp~k~~if~QSd~~~~-~el~w~--L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~--- 215 (319)
|+|+|+||+|++||.||+|+.+ .++.|+ +++.++++++.|+.++|++... ..+++++|+|+||+||||||++|
T Consensus 111 ~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~-~~~~is~g~f~YP~LQaaDil~l~~~ 189 (322)
T 2yxn_A 111 FLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNR-EDQGISFTEFSYNLLQGYDFACLNKQ 189 (322)
T ss_dssp GSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHC-TTCCCCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhcc-CCCCccchhhhHHHHHHHHHHHHhcc
Confidence 9999999999999999999764 777787 8999999999999999876542 12568999999999999999999
Q ss_pred -CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCe
Q 020961 216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (319)
Q Consensus 216 -~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 294 (319)
++|+++||.||+||++++||+|+|||+. .|..+.. ++||++ || +|||||.+ |+
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r~n~~------------------~~~~l~~---pll~gl-dG-~KMSKS~~---n~ 243 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRLHQN------------------QVFGLTV---PLITKA-DG-TKFGKTEG---GA 243 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHCC------------------CCEEEEC---CCCBCT-TS-CBTTEETT---EE
T ss_pred CCceEEecCchhHHHHHHHHHHHHHhCCC------------------Cceeecc---CccCCC-Cc-ccccCCCC---Ce
Confidence 9999999999999999999999999941 2444444 679998 78 79999985 69
Q ss_pred eecCC---CHHHHHHhhhcc
Q 020961 295 INLLD---PKDVSHKFFRRF 311 (319)
Q Consensus 295 I~L~D---spe~I~kKI~~A 311 (319)
|+|+| +|+++++||+++
T Consensus 244 I~L~d~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 244 VWLDPKKTSPYKFYQFWINT 263 (322)
T ss_dssp CBSSTTTSCHHHHHHHHHTC
T ss_pred eeccCCCCCHHHHHHHHhCC
Confidence 99999 999999999997
No 23
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-53 Score=414.59 Aligned_cols=213 Identities=22% Similarity=0.173 Sum_probs=176.0
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccCcEEEEEeccceecC-CC-CHHHHHHHH----HHHHHHHHHcCCCCC
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDNS 150 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~~~~ilIaDlhA~t~-~~-~~~~l~~~~----~~~~~~~lA~GlDp~ 150 (319)
+++++|+||+|||.+|||||++++..|..+|.|++++|+|+|+||+|+ +. ..+.++.++ ..+.+.|+|+|+||+
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999999999988889999999999999997 44 445555554 345557889999999
Q ss_pred CcEEEEcccc---hhhhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEEEecCcch
Q 020961 151 KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (319)
Q Consensus 151 k~~if~QSd~---~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adivpvG~DQ~ 227 (319)
++.||+||+| .++.++.|.++|.+++++++|+.+.+ .+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 118 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~ 193 (394)
T 2dlc_X 118 KLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQR 193 (394)
T ss_dssp TCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred HcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCEEecCccHH
Confidence 9999999999 56788999999999999999876421 11 2 2567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHh
Q 020961 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKF 307 (319)
Q Consensus 228 ~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kK 307 (319)
+|++++||++++|| ++.|..++. ++||+| +|.+|||||++ +++|+|+|+|++|++|
T Consensus 194 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-~~G~KMSKS~~--ns~I~L~D~p~~i~kK 249 (394)
T 2dlc_X 194 KIFVLAEENLPSLG------------------YKKRAHLMN---PMVPGL-AQGGKMSASDP--NSKIDLLEEPKQVKKK 249 (394)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCC-C------------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---ccccCC-CCCCcCCCCCC--CCEEeccCCHHHHHHH
Confidence 99999999999998 335878876 679999 53489999997 4679999999999999
Q ss_pred hhccccCCCC
Q 020961 308 FRRFLTFLMN 317 (319)
Q Consensus 308 I~~A~Td~~~ 317 (319)
||+|+|||.+
T Consensus 250 I~ka~Td~~~ 259 (394)
T 2dlc_X 250 INSAFCSPGN 259 (394)
T ss_dssp HHHSCCCTTC
T ss_pred HHHhcCCCCC
Confidence 9999999965
No 24
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=2.7e-52 Score=413.96 Aligned_cols=206 Identities=17% Similarity=0.251 Sum_probs=175.1
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 020961 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGhylg~l-~~~~~lQ~--g~~~~ilIaDlhA~t~~--~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (319)
+++++|+||+|| |.+|||||++++ .+| ||+ |+.++|+|||+||++++ .+++.+++++++++++|+|+|+||+
T Consensus 101 ~~~~vy~G~dPTag~LHLGh~v~~~~l~~--lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDSMHLGHMIPFVFTKW--LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp CCCEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEEeecCCCCCccHHHHHHHHHHHH--HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 478999999999 899999999976 566 786 78899999999998873 5889999999999999999999999
Q ss_pred CcEEEEcccch--hhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhhc-----------cC
Q 020961 151 KASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ 216 (319)
Q Consensus 151 k~~if~QSd~~--~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~-----------~~ 216 (319)
|++||+||+|+ .+.++.|. ++||++++++.++++ .+++++|+|+||+||||||++ ++
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~ 249 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKT 249 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTC
T ss_pred ceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCC
Confidence 99999999997 56777773 568888888887764 467899999999999999999 57
Q ss_pred CCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeee
Q 020961 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (319)
Q Consensus 217 adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 296 (319)
+++||||.||++|++++||+|+||| |++|+.+.+ ++||+|+++++|||||.+ +++|+
T Consensus 250 ~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~--nsaI~ 306 (432)
T 2ip1_A 250 PCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDD--TTAIF 306 (432)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CG--GGCCB
T ss_pred ceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCC--CCeEe
Confidence 9999999999999999999999998 345877665 789999544579999996 36999
Q ss_pred cCCCHHHHHHhhhc-cccCCC
Q 020961 297 LLDPKDVSHKFFRR-FLTFLM 316 (319)
Q Consensus 297 L~Dspe~I~kKI~~-A~Td~~ 316 (319)
|+|+|++|++||++ |+||+.
T Consensus 307 L~d~p~~i~~KI~~yA~t~~~ 327 (432)
T 2ip1_A 307 MTDTPKQIQKKINKYAFSGGQ 327 (432)
T ss_dssp TTCCHHHHHHHHHHHSCCCSC
T ss_pred ccCCHHHHHHHhhhhcccCCc
Confidence 99999999999999 999973
No 25
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=3.6e-52 Score=413.31 Aligned_cols=205 Identities=20% Similarity=0.290 Sum_probs=181.5
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCC
Q 020961 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGhylg~l-~~~~~lQ~--g~~~~ilIaDlhA~t~~-~~~~~l~~~~~~~~~~~lA~GlDp~k 151 (319)
+++++|+||+|| |.||||||++++ .+| ||+ |+.++|+|||+|+++++ .+++++++|+++++++|+|+|+||+|
T Consensus 107 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 184 (437)
T 1r6u_A 107 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 184 (437)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 578999999999 899999999977 667 786 78999999999999985 68999999999999999999999999
Q ss_pred cEEEEcccchh----hhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhhc-----------c
Q 020961 152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (319)
Q Consensus 152 ~~if~QSd~~~----~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~-----------~ 215 (319)
++||.||+|+. +.++.| +++||++++++.++++ .+++++|+|+||+||||||++ +
T Consensus 185 t~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 255 (437)
T 1r6u_A 185 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 255 (437)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccC
Confidence 99999999975 445444 5668888888887765 467899999999999999999 7
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020961 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 295 (319)
++|+||||.||++|++++||+|+||| +++|..+.+ ++||+|+++++|||||.+ +++|
T Consensus 256 ~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gLdG~~~KMSKS~~--nsaI 312 (437)
T 1r6u_A 256 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDP--NSSI 312 (437)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSS--SSCC
T ss_pred CceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCCCCCccccCCCCC--CCee
Confidence 88999999999999999999999998 345887665 789999433479999997 4699
Q ss_pred ecCCCHHHHHHhhhc-cccCC
Q 020961 296 NLLDPKDVSHKFFRR-FLTFL 315 (319)
Q Consensus 296 ~L~Dspe~I~kKI~~-A~Td~ 315 (319)
+|+|+|++|++|||+ |+||+
T Consensus 313 ~L~D~p~~I~kKI~~ya~td~ 333 (437)
T 1r6u_A 313 FLTDTAKQIKTKVNKHAFSGG 333 (437)
T ss_dssp BTTCCHHHHHHHHHHTSCCCB
T ss_pred eccCCHHHHHHHhhccccCCC
Confidence 999999999999999 99998
No 26
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=2.9e-52 Score=414.62 Aligned_cols=208 Identities=24% Similarity=0.312 Sum_probs=180.5
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 020961 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGhylg~l-~~~~~lQ~--g~~~~ilIaDlhA~t~~--~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (319)
+++++|+||+|| |.+|||||++++ .+| ||+ ++.++|+|+|+|+++.+ .+++++++++++++++|+|+||||+
T Consensus 90 ~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPD 167 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 578999999999 789999999987 778 887 56789999999999863 6999999999999999999999999
Q ss_pred CcEEEEcccchh---hhHHHHHHhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCC----------
Q 020961 151 KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS---------- 217 (319)
Q Consensus 151 k~~if~QSd~~~---~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~a---------- 217 (319)
+++||+||+|++ +.++.|.+++.++++++.+...| .+++++|+|+||+||||||+.+..
T Consensus 168 kt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f--------~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~ 239 (451)
T 3foc_A 168 KTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGF--------SNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPL 239 (451)
T ss_dssp GEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCC--------CSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBC
T ss_pred ceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhccc--------CCCCchHHHhhHHHHHHHHHHhhcCCCCcccccc
Confidence 999999999965 56777888888888887776543 256899999999999999984333
Q ss_pred --------------------------------C-----------------EEEecCcchHHHHHHHHHHHHhhhhhCCcc
Q 020961 218 --------------------------------D-----------------FVPVGEDQKQHLELTRELAERVNYLYGGRK 248 (319)
Q Consensus 218 --------------------------------d-----------------ivpvG~DQ~~hieLaRdiA~r~n~~yg~~~ 248 (319)
| +||||+||+||+|++||||++||
T Consensus 240 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn------- 312 (451)
T 3foc_A 240 PVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG------- 312 (451)
T ss_dssp C-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT-------
T ss_pred ccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC-------
Confidence 3 99999999999999999999999
Q ss_pred ccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCCHHHHHHhhhc-cccCCCC
Q 020961 249 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVSHKFFRR-FLTFLMN 317 (319)
Q Consensus 249 ~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~~-A~Td~~~ 317 (319)
++.|..+.+ ++||||+++++|||||.+ +|+|+|+|+|++|++|||+ |+||+..
T Consensus 313 -----------~~~p~~~~~---~~l~gLdG~~~KMSKS~~--ns~I~l~D~p~~I~kKI~k~A~Td~~~ 366 (451)
T 3foc_A 313 -----------HPKNAYLLG---KFLPGLQGSGTKMSASDP--NSAIYLTDTPAQIKNKINRYAFSGGRD 366 (451)
T ss_dssp -----------SCCCEEEEE---CCCCBTTBTTCCCCTTCG--GGSCBTTCCHHHHHHHHHHHSCCCSCS
T ss_pred -----------CCCCeeecC---CcccCCCCCCCccCCCCC--CCeeeecCCHHHHHHHHhhhccCCCCc
Confidence 345776654 789999555579999997 4799999999999999999 9999743
No 27
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=5.2e-52 Score=407.53 Aligned_cols=208 Identities=19% Similarity=0.254 Sum_probs=167.9
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC--CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 020961 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGhylg~l-~~~~~lQ~--g~~~~ilIaDlhA~t~--~~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (319)
+++++|+|++|| |.+|||||++++ .+| ||+ ++.++|+|||+|+++. +.+++++++++++++++|+|+|+||+
T Consensus 73 ~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~ 150 (393)
T 3hv0_A 73 ELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPE 150 (393)
T ss_dssp CCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 478999999999 679999999988 777 888 4678999999999665 46999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhhc-------c-C---CC
Q 020961 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-------Y-Q---SD 218 (319)
Q Consensus 151 k~~if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~-------~-~---ad 218 (319)
|++||.||+|.+. + ...+.+|.|+.+++++.++.+ .+++++|+|+||+||||||+. + + ++
T Consensus 151 kt~i~~ns~~~~~---~-----~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~ 222 (393)
T 3hv0_A 151 LTFIFTNLEYIAE---L-----YPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHC 222 (393)
T ss_dssp TEEEEEHHHHHHH---H-----HHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCE
T ss_pred ceEEEECCHHHHH---H-----HHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCce
Confidence 9999999999752 1 223457778888888877765 467999999999999999963 3 3 47
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC
Q 020961 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (319)
Q Consensus 219 ivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 298 (319)
+||||.||++|++++||+|+||| +++|..+.+ ++||+|+++++|||||.+ +|+|+|+
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--nsaI~L~ 279 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSLQGSQTKMSASVQ--NSSIFVN 279 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC---------------CCCCBTT
T ss_pred ecccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCCCCCCcCCCCCCC--CCeEecc
Confidence 89999999999999999999998 445777765 779999433479999997 4799999
Q ss_pred CCHHHHHHhhhc-cccCCCC
Q 020961 299 DPKDVSHKFFRR-FLTFLMN 317 (319)
Q Consensus 299 Dspe~I~kKI~~-A~Td~~~ 317 (319)
|+|++|++|||+ |+||+..
T Consensus 280 D~p~~i~kKI~k~A~td~~~ 299 (393)
T 3hv0_A 280 DNEESIRNKIMKYAFSGGQA 299 (393)
T ss_dssp CCHHHHHHHHHHHSCCCSCS
T ss_pred CCHHHHHHHHHhhccCCCCc
Confidence 999999999999 9999743
No 28
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=6.5e-52 Score=407.13 Aligned_cols=208 Identities=18% Similarity=0.237 Sum_probs=164.1
Q ss_pred CCCceEEEeeCCCC-cchhhhHHHH-HHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 020961 76 SVKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (319)
Q Consensus 76 ~~~~~i~tGi~PTG-~lHLGhylg~-l~~~~~lQ~--g~~~~ilIaDlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~ 150 (319)
.+++++|+|++||| .+|||||+++ +.+| ||+ ++.++|+|+|+|++++ +.+++++++++++++++|+|+|+||+
T Consensus 76 ~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 153 (395)
T 3i05_A 76 GQPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPE 153 (395)
T ss_dssp TCCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 35889999999999 6999999998 4777 887 5678889999987765 67999999999999999999999999
Q ss_pred CcEEEEcccchhhhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhh--------hhhccC----C
Q 020961 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----S 217 (319)
Q Consensus 151 k~~if~QSd~~~~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAA--------DIl~~~----a 217 (319)
|++||.||+|.+ .|. ..+.+|.|+.+|+++.++++ .+++++|+|+||+|||| ||++++ +
T Consensus 154 kt~i~~ns~~~~----~~~----~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~ 225 (395)
T 3i05_A 154 LTFIFRDFDYMG----CMY----RTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVF 225 (395)
T ss_dssp SEEEEEHHHHTT----TSH----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCE
T ss_pred ceEEEEcCHHHH----HHH----HHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCc
Confidence 999999999975 121 34568889999999888776 46799999999999999 677788 9
Q ss_pred CEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeec
Q 020961 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 218 divpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 297 (319)
|+||||+||++|++++||+|+|||+ +.|..+.+ ++||||+++++||||| + +|+|+|
T Consensus 226 ~lvp~G~DQ~~~i~l~Rdla~r~~~------------------~~p~~l~~---~~l~gLdG~~~KMSKS-~--~~~I~L 281 (395)
T 3i05_A 226 CLIPQAIDQDPYFRLTRDIAPRLGY------------------LKPAVIHS---KFFPGLSGPKGKMSSS-S--GTAVLL 281 (395)
T ss_dssp EEEEEEGGGHHHHHHHHHTHHHHTC------------------CCCEEEEE---CCCCCC----------------CCBT
T ss_pred eEEEeccchHHHHHHHHHHHHHcCC------------------CCceeecc---ccccCCCCCcccCCCC-C--CCcccC
Confidence 9999999999999999999999983 34766654 7899994434799999 4 699999
Q ss_pred CCCHHHHHHhhhc-cccCCCC
Q 020961 298 LDPKDVSHKFFRR-FLTFLMN 317 (319)
Q Consensus 298 ~Dspe~I~kKI~~-A~Td~~~ 317 (319)
+|+|++|++|||+ |+||+..
T Consensus 282 ~D~p~~i~kKI~k~A~td~~~ 302 (395)
T 3i05_A 282 TDTEKMVKDKINKHAFSGGGA 302 (395)
T ss_dssp TCCHHHHHHHHC---------
T ss_pred CCCHHHHHHHHHhhccCCCcc
Confidence 9999999999999 9999754
No 29
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.9e-51 Score=412.38 Aligned_cols=206 Identities=20% Similarity=0.286 Sum_probs=180.2
Q ss_pred CCceEEEeeCCC-CcchhhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCC
Q 020961 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (319)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGhylg~l-~~~~~lQ~--g~~~~ilIaDlhA~t~-~~~~~~l~~~~~~~~~~~lA~GlDp~k 151 (319)
+++++|+||+|| |.||||||++++ .+| ||+ |+.++|+|||+|++++ ..+++++++|+++++++|+|+|+||+|
T Consensus 154 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 231 (477)
T 1r6t_A 154 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 231 (477)
T ss_dssp CCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 478999999999 899999999987 677 786 7899999999999998 468999999999999999999999999
Q ss_pred cEEEEcccchh----hhHHHHHHhccCCHHHHhchhcHHHHHHhhC-CCCcccccccchHHHhhhhhc-----------c
Q 020961 152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (319)
Q Consensus 152 ~~if~QSd~~~----~~el~w~L~~~~s~~rL~R~~~~k~~~~~~~-~~~~~~g~l~YP~LQAADIl~-----------~ 215 (319)
++||.||+|++ +.++.| +|+|+++++++.++++ .+++++|+|+||+||||||++ +
T Consensus 232 ~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 302 (477)
T 1r6t_A 232 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 302 (477)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccC
Confidence 99999999975 555554 5567777777776654 457899999999999999999 5
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020961 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 295 (319)
++|+||||.||++|++++||+|+||| |++|..+.+ ++||+|+++++|||||.+ +++|
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gLdG~~~KMSKS~~--nsaI 359 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDP--NSSI 359 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTST--TCCC
T ss_pred CceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCCCCCccccCCCCC--CCce
Confidence 78999999999999999999999998 345887665 789999433479999997 4699
Q ss_pred ecCCCHHHHHHhhhc-cccCCC
Q 020961 296 NLLDPKDVSHKFFRR-FLTFLM 316 (319)
Q Consensus 296 ~L~Dspe~I~kKI~~-A~Td~~ 316 (319)
+|+|+|++|++||++ |+||+.
T Consensus 360 ~L~d~p~~i~kKi~~yA~t~~~ 381 (477)
T 1r6t_A 360 FLTDTAKQIKTKVNKHAFSGGR 381 (477)
T ss_dssp BTTCCHHHHHHHHHHHSCCCSC
T ss_pred eecCCHHHHHHHhccccccCCc
Confidence 999999999999999 999983
No 30
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.9e-51 Score=403.58 Aligned_cols=206 Identities=15% Similarity=0.155 Sum_probs=182.5
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C--------CCHHHHHHHHHHH---HHHH
Q 020961 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAIY 142 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~--------~~~~~l~~~~~~~---~~~~ 142 (319)
+++++|+||+|||+ +||||++ .+.+|++||+ |++++++|||+||+++ | .+++++++|++++ ++.|
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999996 9999966 5789999999 7999999999999998 5 6789999999766 6678
Q ss_pred HHcCCCCCCcEEEEcccchhh-hHHHHH--HhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhcc----
Q 020961 143 LACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (319)
Q Consensus 143 lA~GlDp~k~~if~QSd~~~~-~el~w~--L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~---- 215 (319)
+++|+||+|++||+||+|+++ .++.|+ +++.+++++|.|+.+||++. ..+++++|+|+||+||||||++|
T Consensus 110 La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~---~~~~is~~ef~YPlLQaaDil~l~~~~ 186 (432)
T 2jan_A 110 VDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL---AGEGISYTEFSYLLLQANDYVELHRRH 186 (432)
T ss_dssp SCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT---STTCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh---cCCCcchHHHHHHHHHHHHHHHHhccC
Confidence 899999999999999999874 588888 89999999999999999765 23578999999999999999999
Q ss_pred CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCee
Q 020961 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (319)
Q Consensus 216 ~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 295 (319)
++|+||||.||++|++++||+|+|||+. .|..+.. ++||++ || +|||||.+ +++|
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~l~~---plL~~l-dG-~KMSKS~~--nsaI 241 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLGA------------------TVHALTV---PLVTAA-DG-TKFGKSTG--GGSL 241 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHCC------------------CCEEEEC---CCCBCT-TS-CBTTBCSS--SCBC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCC------------------Ccccccc---ccccCC-Cc-CcCCCCCC--CCeE
Confidence 9999999999999999999999999942 1334443 679998 78 79999986 3599
Q ss_pred ecCC---CHHHHHHhhhcc
Q 020961 296 NLLD---PKDVSHKFFRRF 311 (319)
Q Consensus 296 ~L~D---spe~I~kKI~~A 311 (319)
+|+| +|++|++||+++
T Consensus 242 ~L~d~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 242 WLDPQMTSPYAWYQYFVNT 260 (432)
T ss_dssp BSSTTTSCHHHHHHHHHTC
T ss_pred EccCCCCCHHHHHHHHhcC
Confidence 9999 999999999996
No 31
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.9e-50 Score=400.79 Aligned_cols=209 Identities=20% Similarity=0.217 Sum_probs=173.3
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 020961 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~---------~~~~~l~~~~~~~~~~~lA 144 (319)
+++++|+||+|||. +|||||++ +.+|++||+ ||+++|+|||+||+++ | .+++++++|+.++.+.+.
T Consensus 36 ~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~- 113 (432)
T 1h3f_A 36 RPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG- 113 (432)
T ss_dssp SCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT-
T ss_pred CCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH-
Confidence 57899999999996 99999995 799999999 7999999999999998 3 246788888877766654
Q ss_pred cCCC--CCCcEEEEcccchhhhHHHHHH--hccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCEE
Q 020961 145 CGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (319)
Q Consensus 145 ~GlD--p~k~~if~QSd~~~~~el~w~L--~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adiv 220 (319)
+|+| |+|++||+||+|.++..+.|++ ++.++++++.+..+||++... .+++++|+|+||+||||||++|++|+|
T Consensus 114 ~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l~ 191 (432)
T 1h3f_A 114 KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADVE 191 (432)
T ss_dssp TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSEE
T ss_pred HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccEE
Confidence 8999 9999999999998876666665 899999998888899876543 357899999999999999999999999
Q ss_pred EecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCCC
Q 020961 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300 (319)
Q Consensus 221 pvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~Ds 300 (319)
|||.||++|++++||+++|||.. .|..+.. ++||++ ||++|||||.+ |+|+|+|+
T Consensus 192 ~gG~DQ~~ni~l~rdlarr~~~~------------------~~~~lt~---pll~gl-dG~~KMSKS~~---n~I~L~ds 246 (432)
T 1h3f_A 192 MGGTDQRFNLLVGREVQRAYGQS------------------PQVCFLM---PLLVGL-DGREKMSKSLD---NYIGLTEP 246 (432)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTCC------------------CCEEEEE---CCCBCT-TSSSBCCGGGT---CCCBTTSC
T ss_pred EechHHHHHHHHHHHHHHHhCCC------------------CceEeec---ccccCC-CCccccCcCCC---CeeCCCCC
Confidence 99999999999999999999832 1334433 679998 78779999984 69999999
Q ss_pred HHHHHHhhhccccC
Q 020961 301 KDVSHKFFRRFLTF 314 (319)
Q Consensus 301 pe~I~kKI~~A~Td 314 (319)
|++|++||+++.+|
T Consensus 247 p~~i~~Ki~~~~d~ 260 (432)
T 1h3f_A 247 PEAMFKKLMRVPDP 260 (432)
T ss_dssp HHHHHHHHHTSCGG
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999998765
No 32
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=9.8e-51 Score=394.16 Aligned_cols=205 Identities=21% Similarity=0.196 Sum_probs=166.9
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 020961 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~l~~~~~~~~~~~lA 144 (319)
+++++|+||+|||. +||||++ .+.+|++||+ |++++|+|||+||+|+ |. +++++++|+++++++|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999997 9999965 5789999999 7999999999999998 42 689999999999999999
Q ss_pred cCCCCCC-----------cEEEEcccchhhhHHHHHHh---ccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhh
Q 020961 145 CGIDNSK-----------ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 210 (319)
Q Consensus 145 ~GlDp~k-----------~~if~QSd~~~~~el~w~L~---~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAA 210 (319)
+ +||++ ++||+||+|..+.++.|++. +.+++++|.++.+||++... ++++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 88854 99999999987766677654 58999999999998865432 35789999999999999
Q ss_pred hhhcc----CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 020961 211 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (319)
Q Consensus 211 DIl~~----~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSK 286 (319)
||++| ++|+||||.||+||++++||+|+|||+ + .|..+.. ++||++ || +||||
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~~l-dG-~KMSK 257 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG--E----------------DVFGITV---PLITST-TG-AKLGK 257 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS--C----------------CCEEEEE---CCCC-----------
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC--C----------------Ccccccc---ccccCC-Cc-ccccC
Confidence 99999 999999999999999999999999994 1 1333333 568998 78 79999
Q ss_pred CCCCCCCeeecCC---CHHHHHHhhhcc
Q 020961 287 SAPSDQSRINLLD---PKDVSHKFFRRF 311 (319)
Q Consensus 287 S~p~~~s~I~L~D---spe~I~kKI~~A 311 (319)
|. +|+|+|+| +|++|++||+++
T Consensus 258 S~---~naI~L~d~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 258 SA---GNAVWLNRDKTSPFELYQFFVRQ 282 (356)
T ss_dssp -------CCBSSTTTSCHHHHHHHHHTC
T ss_pred CC---CCeeeccCCCCCHHHHHHHHHcC
Confidence 96 58999999 999999999996
No 33
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=6.5e-49 Score=388.66 Aligned_cols=203 Identities=16% Similarity=0.154 Sum_probs=181.9
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 020961 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~l~~~~~~~~~~~lA 144 (319)
+++++|+||+|||. +|||||++ +.+|++||+ ||+++++|||+||+++ |. +++++++|++++.+++++
T Consensus 31 ~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~ 109 (420)
T 1jil_A 31 EQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHN 109 (420)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999995 789999998 8999999999999998 43 899999999999999999
Q ss_pred cCCCC---CCcEEEEcccch-hhhHHHHHH--hccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhcc---
Q 020961 145 CGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (319)
Q Consensus 145 ~GlDp---~k~~if~QSd~~-~~~el~w~L--~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~--- 215 (319)
+ ||| ++++||.||+|+ ++.++.|+. ++.++++|+.++.+||++. + +++++|+|+||+||||||++|
T Consensus 110 ~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~~ 184 (420)
T 1jil_A 110 I-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNRE 184 (420)
T ss_dssp H-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 9 888 999999999997 568999985 8999999999999998654 2 578999999999999999999
Q ss_pred -CCCEEEecCcchHHHHHHHHHHHHh-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020961 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 216 -~adivpvG~DQ~~hieLaRdiA~r~-n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 293 (319)
++|+||||.||++|++++||+|+|| |.. .|..+.. ++||++ || +|||||. +|
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~~------------------~~~~l~~---pll~~l-dG-~KMSKS~---~n 238 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRRMYGQT------------------DAYGLTI---PLVTKS-DG-KKFGKSE---SG 238 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHCCC------------------CCEEEEE---CCCBCT-TS-CBTTBCS---SS
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCCC------------------CeeEeec---ccccCC-cc-ccccCCC---CC
Confidence 9999999999999999999999999 731 1334443 679998 78 7999998 47
Q ss_pred eeecCC---CHHHHHHhhhcc
Q 020961 294 RINLLD---PKDVSHKFFRRF 311 (319)
Q Consensus 294 ~I~L~D---spe~I~kKI~~A 311 (319)
+|+|+| +|++|++||+++
T Consensus 239 aI~L~d~~tsp~~i~~ki~~~ 259 (420)
T 1jil_A 239 AVWLDAEKTSPYEFYQFWINQ 259 (420)
T ss_dssp BCBSSTTTSCHHHHHHHHHTC
T ss_pred eEecCCCCCCHHHHHHHHhcC
Confidence 999999 999999999986
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.5e-49 Score=392.85 Aligned_cols=204 Identities=15% Similarity=0.181 Sum_probs=173.8
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHH---HHH
Q 020961 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRET---AAI 141 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~~---------~~~~l~~~~~~~---~~~ 141 (319)
+++++|+||+|||. +|||||++ +.+|++||+ ||+++++|||+||+++ |. +++++++|++++ ++.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999995 789999998 7999999999999998 43 899999999876 556
Q ss_pred HHHcCCCCCCcEEEEcccchhhhHHHHHH---hccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhcc---
Q 020961 142 YLACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (319)
Q Consensus 142 ~lA~GlDp~k~~if~QSd~~~~~el~w~L---~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~--- 215 (319)
|+++|+||+|++||.||+|+.+..+.|+| +..++++|+.+...|+ ++. ++++++|+|+||+||||||++|
T Consensus 108 ~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k---~r~-~~~is~~ef~YPlLQaaDil~l~~~ 183 (419)
T 2ts1_A 108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQ---SRI-ETGISFTEFSYMMLQAYDFLRLYET 183 (419)
T ss_dssp SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHH---TTT-TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhh---hcc-CCCcchHHHHHHHHHHHHHHHHhcc
Confidence 77889999999999999998766556655 4677888766665554 334 3678999999999999999999
Q ss_pred -CCCEEEecCcchHHHHHHHHHHHHh-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020961 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 216 -~adivpvG~DQ~~hieLaRdiA~r~-n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 293 (319)
++|+||||.||++|++++||+|+|| |.. .|..+.. ++||++ || +|||||. +|
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~------------------~~~~lt~---pll~~l-dG-~KMSKS~---~n 237 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTKGEA------------------RAFGLTI---PLVTKA-DG-TKFGKTE---SG 237 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS---SC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCCC------------------Ceeeccc---ccccCC-Cc-ccccCCC---CC
Confidence 9999999999999999999999999 731 1333433 668998 78 7999997 58
Q ss_pred eeecCC---CHHHHHHhhhcc
Q 020961 294 RINLLD---PKDVSHKFFRRF 311 (319)
Q Consensus 294 ~I~L~D---spe~I~kKI~~A 311 (319)
+|+|+| +|+++++||+++
T Consensus 238 aI~L~d~~tsp~~i~qki~~~ 258 (419)
T 2ts1_A 238 TIWLDKEKTSPYEFYQFWINT 258 (419)
T ss_dssp CCBSSTTTSCHHHHHHHHHTC
T ss_pred eEecCCCCCCHHHHHHHHhcC
Confidence 999999 999999999996
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=2.5e-48 Score=381.46 Aligned_cols=221 Identities=19% Similarity=0.141 Sum_probs=181.0
Q ss_pred CCceEEEeeCCCCc-chhhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 020961 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (319)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~-~---------~~~~~l~~~~~~~~~~~lA 144 (319)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+|+ | .+++++++|++++.+++++
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a 141 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKK 141 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHH
Confidence 46799999999999 99999995 789999999 8999999999999998 4 2778899999999888888
Q ss_pred cC-----------CC---CCCcEEEEcccc-hhhhHHHHH--HhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHH
Q 020961 145 CG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVL 207 (319)
Q Consensus 145 ~G-----------lD---p~k~~if~QSd~-~~~~el~w~--L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~L 207 (319)
+| +| |+++.||.||+| +++.++.|+ +++.++++++.+..+||.+.. ..+++++|+|+||+|
T Consensus 142 ~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~--~~~~is~gef~YPlL 219 (392)
T 1y42_X 142 LWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMT--QGDGVSFAEFTYPIM 219 (392)
T ss_dssp HHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTS--SSSCCCHHHHHHHHH
T ss_pred HhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhc--CCCCcccHHHHHHHH
Confidence 65 45 789999999997 667888898 899999998776667775432 135789999999999
Q ss_pred Hhhhhhcc----CCCEEEecCcchHHHHHHHHHHHHhhhhhCC---c--cccccCCCCCccccCCccccCCCCcccccCC
Q 020961 208 MASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG---R--KWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (319)
Q Consensus 208 QAADIl~~----~adivpvG~DQ~~hieLaRdiA~r~n~~yg~---~--~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~ 278 (319)
|||||+++ ++|+||||.||++|++++||||+|||+.|+. . ..++++ ++.|..+.. ++||++
T Consensus 220 QAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~---pll~~l- 289 (392)
T 1y42_X 220 QGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV---PLLTDS- 289 (392)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC---CCCBCT-
T ss_pred HHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc---ccCcCC-
Confidence 99999987 6999999999999999999999999987621 0 001111 233545544 679999
Q ss_pred CCCCcCCCCCCCCCCeeecCC---CHHHHHHhhhccccCC
Q 020961 279 DGLSKMSKSAPSDQSRINLLD---PKDVSHKFFRRFLTFL 315 (319)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L~D---spe~I~kKI~~A~Td~ 315 (319)
|| +|||||. +|+|+|+| +|+++++||+++ +|+
T Consensus 290 dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~-~D~ 324 (392)
T 1y42_X 290 SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRR-SDQ 324 (392)
T ss_dssp TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTC-CTT
T ss_pred ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcC-Cch
Confidence 78 7999997 58999999 999999999986 454
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=4.2e-41 Score=349.89 Aligned_cols=209 Identities=11% Similarity=0.096 Sum_probs=169.8
Q ss_pred CCCCCCCCceEEEeeCCCCcchhhhHHHHHHHHHHHh-c--cCcEEEEEeccceecC-C--CCHHHHHHHHHHHHHHHHH
Q 020961 71 VASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-N--SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLA 144 (319)
Q Consensus 71 ~~~~~~~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ-~--g~~~~ilIaDlhA~t~-~--~~~~~l~~~~~~~~~~~lA 144 (319)
.+++...+..++|+- |||.+||||++++++.+.++| . |++++|+||||||+++ + .+++++++++.|++++|+|
T Consensus 375 ~~~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~a 453 (690)
T 3p0j_A 375 LPAAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKA 453 (690)
T ss_dssp -CCCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 334445677888888 999999999999655366654 4 7899999999999998 4 5899999999999999999
Q ss_pred cCCCCCCcEEEEcccchhh-hHHHHH----HhccCCHHHHhchhcHHHHHHhhCCCCcccccccchHHHhhhhhccCCCE
Q 020961 145 CGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 219 (319)
Q Consensus 145 ~GlDp~k~~if~QSd~~~~-~el~w~----L~~~~s~~rL~R~~~~k~~~~~~~~~~~~~g~l~YP~LQAADIl~~~adi 219 (319)
+|+|| +++|++||+|... .+++|. +++.++++|+.+.. +.+++++|+|+||+||+|||+++++|+
T Consensus 454 lG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi 523 (690)
T 3p0j_A 454 YGLPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSH 523 (690)
T ss_dssp HTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSE
T ss_pred cCCCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCE
Confidence 99998 8999999998653 246664 67788888776542 236789999999999999999999999
Q ss_pred EEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC
Q 020961 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (319)
Q Consensus 220 vpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 299 (319)
+|||+||++|++|+||+|+++++ |..++. .++|+|+++.+||||+++ +|+|+|+|
T Consensus 524 ~~gG~DQ~~~~~LaRd~~~~~~~--------------------~~~~~~---~~~P~L~gp~~~~~~~s~--~~~I~l~D 578 (690)
T 3p0j_A 524 VISTSLDGHINAFAREYTKERID--------------------CVQTLE---GRIPALHRPGAAPAVLGA--DDVLYLDD 578 (690)
T ss_dssp EEECSTTTTTTHHHHHHTTTCSE--------------------EEECCC---CSSCCSSCCCC---------CCSCBTTC
T ss_pred EecccccHHHHHHHHHHHHhccC--------------------cccccc---cccccCCCcccccCCCCC--CCeeeccC
Confidence 99999999999999999998541 444444 679999666566667765 69999999
Q ss_pred CHHHHHHhhhccccCC
Q 020961 300 PKDVSHKFFRRFLTFL 315 (319)
Q Consensus 300 spe~I~kKI~~A~Td~ 315 (319)
+|++|++|||+|+|+|
T Consensus 579 ~~~~i~~KI~kA~c~p 594 (690)
T 3p0j_A 579 NDMDIRRKIKKAYSAP 594 (690)
T ss_dssp CHHHHHHHHHHSCCCT
T ss_pred CHHHHHHHHHHhcCCC
Confidence 9999999999999998
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.33 E-value=1.1e-12 Score=124.27 Aligned_cols=187 Identities=16% Similarity=0.202 Sum_probs=111.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchhh-
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~~- 163 (319)
.|||.+||||+..++.+|...+. +..+++-|.|.. +.....+....+.+++.++|+++++. +++||+..+.
T Consensus 13 sPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDtD------~~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~~y 85 (298)
T 1nzj_A 13 SPSGELHFGSLIAALGSYLQARARQGRWLVRIEDID------PPREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHDAY 85 (298)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSC------GGGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecCC------chhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHHHH
Confidence 56799999999999999988776 566777899862 11234567788999999999999974 7999996542
Q ss_pred hHHH-------HHHhccCCHHHHhchhc-HHHHHHh---hC---------------CCCcccccccchH-HHhhhhhccC
Q 020961 164 VELM-------WLLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILLYQ 216 (319)
Q Consensus 164 ~el~-------w~L~~~~s~~rL~R~~~-~k~~~~~---~~---------------~~~~~~g~l~YP~-LQAADIl~~~ 216 (319)
.+.. +.+.|.+|..+|++... |....+. .+ -++.-.|.+.++. .+.-|.++++
T Consensus 86 ~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R 165 (298)
T 1nzj_A 86 REALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHR 165 (298)
T ss_dssp HHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEEC
T ss_pred HHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEEEC
Confidence 1111 12458999998876411 0000000 00 0011234445554 4566777766
Q ss_pred CCEEEe-------------------cCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccC
Q 020961 217 SDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSL 277 (319)
Q Consensus 217 adivpv-------------------G~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L 277 (319)
+|-.|. |.|+..+...-..+.+-++ ++.|...+. ++|.+.
T Consensus 166 ~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~---pll~~~ 224 (298)
T 1nzj_A 166 RDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHL---PLALNP 224 (298)
T ss_dssp TTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CBCCC-
T ss_pred CCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEe---eeeECC
Confidence 555555 9999988877777777776 334666655 457676
Q ss_pred CCCCCcCCCCCCCCCCeeecCCCHHHH
Q 020961 278 TDGLSKMSKSAPSDQSRINLLDPKDVS 304 (319)
Q Consensus 278 ~dg~~KMSKS~p~~~s~I~L~Dspe~I 304 (319)
+| +||||++-+ ..|.-.++..-+
T Consensus 225 -~g-~KLSKR~g~--~~v~~~~~~~~~ 247 (298)
T 1nzj_A 225 -QG-AKLSKQNHA--PALPKGDPRPVL 247 (298)
T ss_dssp ----------------CCCSSCCHHHH
T ss_pred -CC-CcccccCCc--cChhcCCccHHH
Confidence 66 799999842 334444554443
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.23 E-value=8.8e-12 Score=125.60 Aligned_cols=196 Identities=17% Similarity=0.169 Sum_probs=128.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCc-------EEEE
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA-------SVFV 156 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~-------~if~ 156 (319)
.|||.+||||+..++.+|...+. +..+++-|.|. |+ ....+....+.+++.++||++|.. .+|+
T Consensus 14 sPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt-------D~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~ 86 (498)
T 2ja2_A 14 SPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT-------DAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYR 86 (498)
T ss_dssp CSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-------CTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCee
Confidence 57799999999999999987776 55666669998 33 335567788899999999999974 5899
Q ss_pred cccchhhhHHHH--------HHhccCCHHHHhchh---------cHHH---------HHHh--hCCC----------Cc-
Q 020961 157 QSHVRAHVELMW--------LLSSATPIGWLNKMI---------QFKE---------KSHK--AGGE----------NV- 197 (319)
Q Consensus 157 QSd~~~~~el~w--------~L~~~~s~~rL~R~~---------~~k~---------~~~~--~~~~----------~~- 197 (319)
||+..+....+. .+.|.+|-.+|+++- .|.. ..+. .|.. .+
T Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 166 (498)
T 2ja2_A 87 QSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLA 166 (498)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEE
T ss_pred eecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceE
Confidence 999755322111 155999999886542 1111 0000 0100 00
Q ss_pred ----ccccccchHHHhhhhhccCCCE-------------------EEecCcchHHHHHHHHHHHHhhhhhCCccccccCC
Q 020961 198 ----GVALLTYPVLMASDILLYQSDF-------------------VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (319)
Q Consensus 198 ----~~g~l~YP~LQAADIl~~~adi-------------------vpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~ 254 (319)
-.|.+.|+.-+.-|.+.+++|. |.-|.|+..+...-+.+.+.|+. +|. |
T Consensus 167 ~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~------g- 238 (498)
T 2ja2_A 167 WNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGV------A- 238 (498)
T ss_dssp EEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTS------C-
T ss_pred EEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcC------C-
Confidence 1244666655556776655554 44599999999999999999965 421 0
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020961 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 255 ~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
++.|+..+. +.+.+. +| +||||++. .+.|.+ .|+.|..-+..
T Consensus 239 -----~~~P~~~h~---plil~~-~g-~KLSKR~g----~~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 239 -----ERIPKFAHL---PTVLGE-GT-KKLSKRDP----QSNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp -----CCCCEEEEE---CCEECS-SS-SBCCTTSG----GGBHHHHHHHTCCHHHHHHHHHT
T ss_pred -----CCCCeEEEe---eeeECC-CC-CcccccCC----cccHHHHHhCCCCHHHHHHHHHH
Confidence 345776665 457776 66 79999984 233332 46666655543
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.23 E-value=4.2e-12 Score=127.12 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=127.8
Q ss_pred CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcE-------EEE
Q 020961 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS-------VFV 156 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~-------if~ 156 (319)
.|||.+||||+..++.+|...+. +..+++-|.|. |+ ....+....+.+++.++|++||... .|+
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~ 81 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT-------DRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYR 81 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC-------CTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCee
Confidence 57899999999999999987765 66777888887 22 2344577788999999999999752 499
Q ss_pred cccchhh-hHHHH-------HHhccCCHHHHhchh-------------cHHHHHHhh--CC-----------CCc-----
Q 020961 157 QSHVRAH-VELMW-------LLSSATPIGWLNKMI-------------QFKEKSHKA--GG-----------ENV----- 197 (319)
Q Consensus 157 QSd~~~~-~el~w-------~L~~~~s~~rL~R~~-------------~~k~~~~~~--~~-----------~~~----- 197 (319)
||+..+. .+..- .+.|.+|-.+|.++- +..+..+.. |. +.+
T Consensus 82 QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~ 161 (468)
T 1j09_A 82 QSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDE 161 (468)
T ss_dssp GGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEET
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEec
Confidence 9997542 22111 145899998886531 222211111 10 001
Q ss_pred ccccccchHHHhhhhhccCCCEEEe-------------------cCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCc
Q 020961 198 GVALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258 (319)
Q Consensus 198 ~~g~l~YP~LQAADIl~~~adivpv-------------------G~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~ 258 (319)
--|.+.+|..+.-|.+++++|..|. |.|+..|...-..+.+.|+
T Consensus 162 ~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg----------------- 224 (468)
T 1j09_A 162 LRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG----------------- 224 (468)
T ss_dssp TTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT-----------------
T ss_pred cceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC-----------------
Confidence 1255777777777888876665555 9999999999999999987
Q ss_pred cccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020961 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 259 ~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
++.|+..+. +.+.+. +| +||||++.+ . .|.+ .|+.|.+-+..
T Consensus 225 -~~~p~~~h~---~li~~~-~g-~klSKR~g~--~--~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 225 -WEAPRFYHM---PLLRNP-DK-TKISKRKSH--T--SLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp -CCCCEEEEE---CCCBCT-TS-CBCCTTTSC--C--BHHHHHHTTCCHHHHHHHHHH
T ss_pred -CCCCeEEEe---eeeeCC-CC-Cccccccch--h--hHHHHHHCCCCHHHHHHHHHH
Confidence 234665554 446675 66 799999843 2 3332 46666665543
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.19 E-value=5.4e-12 Score=126.88 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=125.8
Q ss_pred eEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcE----
Q 020961 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS---- 153 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~---- 153 (319)
+.=-.=.|||.+||||+..++.+|...+. +.++++-|.|. |+ ....+....+.+++.++|+++|...
T Consensus 27 ~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wDe~~~~gG 99 (488)
T 3afh_A 27 RVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT-------DTERSSREYEQQILESLRWCGLDWDEGPDIGG 99 (488)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-------CTTTCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred eEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC-------CcccccHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 34444467899999999999999987766 67788888888 22 3355677888999999999999753
Q ss_pred ---EEEcccchhh-hHHHHH-------HhccCCHHHHhch--hcHHHH--HHhhC---------C-CC-----ccccccc
Q 020961 154 ---VFVQSHVRAH-VELMWL-------LSSATPIGWLNKM--IQFKEK--SHKAG---------G-EN-----VGVALLT 203 (319)
Q Consensus 154 ---if~QSd~~~~-~el~w~-------L~~~~s~~rL~R~--~~~k~~--~~~~~---------~-~~-----~~~g~l~ 203 (319)
.|+||+..+. .+..-. +.|.+|-.+|++. ..|... ....| . .. .-.|.+.
T Consensus 100 ~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~ 179 (488)
T 3afh_A 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179 (488)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence 6999997542 221111 3478877776652 011100 00001 0 00 0123333
Q ss_pred chHHHhhhhhcc-------------------CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc
Q 020961 204 YPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (319)
Q Consensus 204 YP~LQAADIl~~-------------------~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~ 264 (319)
++.-+.-|.+++ +.++|.-|.|+..+...-..+.+.|+ ++.|+
T Consensus 180 ~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~ 241 (488)
T 3afh_A 180 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 241 (488)
T ss_dssp EEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCE
T ss_pred ecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCe
Confidence 333333344433 56666679999999999999999987 34577
Q ss_pred cccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020961 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 265 ~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
..+. +.|.+. +| +||||++. .+.|.+ .|+.|.+-+..
T Consensus 242 f~H~---pli~~~-~g-~KLSKR~g----~~~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 242 FMHI---PLILGS-DR-TPLSKRHG----ATSVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp EEEE---CCEECT-TS-SBCCTTTS----CCBHHHHHHHTCCHHHHHHHHHH
T ss_pred EEEE---eeeeCC-CC-CcccCcCC----cccHHHHHHCCCCHHHHHHHHHH
Confidence 6665 457776 67 79999984 234433 56666665544
No 41
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.06 E-value=1.1e-11 Score=127.13 Aligned_cols=199 Identities=15% Similarity=0.153 Sum_probs=122.9
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-----
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~----- 152 (319)
.++=..=.|||.+||||+.+++.+|...+. +.++++-|.|. ++ .....+....+.+++.++|+++|..
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~--~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG 203 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGG 203 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CS--SSCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Ch--hhccHHHHHHHHHHHHHcCCCCCCCCCcCC
Confidence 444444678899999999999999987665 67788889885 21 1235567778889999999999974
Q ss_pred --EEEEcccchhh-hHHHH-------HHhccCCHHHHhch--hcHHHH--HHhhC---------C------CCccccccc
Q 020961 153 --SVFVQSHVRAH-VELMW-------LLSSATPIGWLNKM--IQFKEK--SHKAG---------G------ENVGVALLT 203 (319)
Q Consensus 153 --~if~QSd~~~~-~el~w-------~L~~~~s~~rL~R~--~~~k~~--~~~~~---------~------~~~~~g~l~ 203 (319)
..|+||+..+. .+..- .+.|.+|-.+|++. ..|... ....| . .+.-.|.+.
T Consensus 204 ~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~ 283 (592)
T 3al0_C 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 283 (592)
T ss_dssp TTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceee
Confidence 26899997542 12111 13477776665542 000000 00000 0 001123333
Q ss_pred chHHHhhhhhcc-------------------CCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc
Q 020961 204 YPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (319)
Q Consensus 204 YP~LQAADIl~~-------------------~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~ 264 (319)
++.-+.-|.+.+ +.++|.-|.|+..|...-+.+.+.|+ ++.|+
T Consensus 284 ~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~ 345 (592)
T 3al0_C 284 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 345 (592)
T ss_dssp CCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCB
T ss_pred eccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCe
Confidence 333333344433 45666669999999999888888876 33466
Q ss_pred cccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020961 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 265 ~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
..+. +.|.+. +| +||||++. .+.|.+ .|+.|..-+..
T Consensus 346 ~~hl---pli~~~-~g-~KLSKR~g----~~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 346 FMHI---PLILGS-DR-TPLSKRHG----ATSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp CCEE---CCCBCT-TS-SBCCTTTC----SSBHHHHHHTTCCHHHHHHHHTT
T ss_pred EEEe---eeeeCC-CC-CcccccCC----cccHHHHHHCCCCHHHHHHHHHH
Confidence 5554 457776 66 79999984 233432 57777666544
No 42
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.05 E-value=6.3e-10 Score=111.99 Aligned_cols=192 Identities=16% Similarity=0.163 Sum_probs=121.8
Q ss_pred eCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEcccchh-
Q 020961 85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (319)
Q Consensus 85 i~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd~~~- 162 (319)
=.|||.+||||...++.+|...+. +.++++-|.|.-. .....+.+..+.+++.++||+++. .+|+||+..+
T Consensus 8 PSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~~~ 80 (492)
T 2cfo_A 8 PSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDR------ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRLDL 80 (492)
T ss_dssp CCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSS------SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHHH
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCc------cccchHHHHHHHHHHHHcCCCCCC-CCccccCCHHH
Confidence 357899999999999999987665 6678889999831 123456778889999999999996 4799999644
Q ss_pred hhHHHHH-------HhccCCHHHHhchh----------cHH---------HHHH--hhCCC-----Ccc-----------
Q 020961 163 HVELMWL-------LSSATPIGWLNKMI----------QFK---------EKSH--KAGGE-----NVG----------- 198 (319)
Q Consensus 163 ~~el~w~-------L~~~~s~~rL~R~~----------~~k---------~~~~--~~~~~-----~~~----------- 198 (319)
+.+..-. +.|+++-.+|+.+- .|. +..+ ..|.. .++
T Consensus 81 y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v 160 (492)
T 2cfo_A 81 YRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLV 160 (492)
T ss_dssp HHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETT
T ss_pred HHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecc
Confidence 2222111 34888887775421 011 0000 00100 000
Q ss_pred cccccchHHHh-hhhh------------------------ccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccC
Q 020961 199 VALLTYPVLMA-SDIL------------------------LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (319)
Q Consensus 199 ~g~l~YP~LQA-ADIl------------------------~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~ 253 (319)
-|.+.++.-+. -|.+ ..+.|+|.-|.|+..+-..-..+.+.|+
T Consensus 161 ~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg------------ 228 (492)
T 2cfo_A 161 RGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG------------ 228 (492)
T ss_dssp TEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT------------
T ss_pred eeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC------------
Confidence 12333333333 3444 4456677899999999988888888876
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020961 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 254 ~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
++.|...+. ++|.+. +| +||||++.+ +.|.+ .|+.|..-+..
T Consensus 229 ------~~~P~~~H~---plil~~-~g-~KLSKr~g~----~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 229 ------ATPPNFAHT---PLILNS-TG-QKLSKRDGV----TSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp ------CCCCEEEEE---CCEECS-SS-SBCCTTSSC----CBHHHHHHTTCCHHHHHHHHHH
T ss_pred ------CCCceEEEe---eeEECC-CC-CEecccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 334766665 457776 67 799999842 23322 46666665544
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.53 E-value=2.1e-07 Score=93.31 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=117.8
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCc-----
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~----- 152 (319)
.+....-.|||.+||||..+++.+|.--.. +...++-|.|... .....+....+.+++.++|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~------~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDL------ERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSC------CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCc------cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 355667789999999999999999875544 5566767766531 1234556777888899999999863
Q ss_pred --EEEEcccchh-hhHHHHH-------HhccCCHHHHhchh----------cHH----HH-------HH--hhCC-----
Q 020961 153 --SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI----------QFK----EK-------SH--KAGG----- 194 (319)
Q Consensus 153 --~if~QSd~~~-~~el~w~-------L~~~~s~~rL~R~~----------~~k----~~-------~~--~~~~----- 194 (319)
-.|+||+..+ +.+..-. +.|.++-.+|..+- .|. +. .+ ..|.
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR 167 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF 167 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence 2578999533 2221111 23555544432210 000 00 00 0000
Q ss_pred ---C-----------------Cccccccc------chHHHhhhhh---ccCCCEEEecCcchHHHHHHHHHHHHhhhhhC
Q 020961 195 ---E-----------------NVGVALLT------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245 (319)
Q Consensus 195 ---~-----------------~~~~g~l~------YP~LQAADIl---~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg 245 (319)
. +..+|-++ ||..+-|+++ ..+.+.|..|.||..|...-..+.+.++
T Consensus 168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG---- 243 (481)
T 2o5r_A 168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE---- 243 (481)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----
T ss_pred EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----
Confidence 0 00111111 4555544443 3578999999999999998888888887
Q ss_pred CccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecCC------CHHHHHHhhhc
Q 020961 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVSHKFFRR 310 (319)
Q Consensus 246 ~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------spe~I~kKI~~ 310 (319)
++.|...+. +++.+. +| +||||++.+ ..|.| .|+.|.+-+..
T Consensus 244 --------------~~~p~~~H~---plil~~-~G-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 244 --------------KAPPVFAHV---STILGP-DG-KKLSKRHGA----TSVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp --------------CCCCEEEEE---CCEECT-TS-SBCCGGGSC----CBHHHHHHHTCCHHHHHHHHHT
T ss_pred --------------CCCCeEEEE---eeEECC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 334765554 345564 66 699999842 23332 46666555443
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.45 E-value=2.3e-06 Score=86.11 Aligned_cols=198 Identities=18% Similarity=0.166 Sum_probs=114.6
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
+.+.=-.=.|||.+||||+..++.+|...+. +...++-|-|. |+ ....+....+.+++.++|++|+. ..|
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~i~~dl~wlGl~~d~-~~~ 96 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDT-------DVERSSQEAVDAILEGMAWLGLDYDE-GPY 96 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSE-EEE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCC-------CcccccHHHHHHHHHHHHHcCCCCCC-CCc
Confidence 3444444467799999999999999986665 55677777775 32 23456778899999999999996 469
Q ss_pred Ecccchh-hhHHHH-------HHhccCCHHHHhchhcHHH----------HHHh------------------hC---CCC
Q 020961 156 VQSHVRA-HVELMW-------LLSSATPIGWLNKMIQFKE----------KSHK------------------AG---GEN 196 (319)
Q Consensus 156 ~QSd~~~-~~el~w-------~L~~~~s~~rL~R~~~~k~----------~~~~------------------~~---~~~ 196 (319)
+||+..+ +.+..- .+.|++|-.+|+.+-.-.. ..+. +. +..
T Consensus 97 ~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~ 176 (490)
T 4g6z_A 97 YQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGT 176 (490)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSE
T ss_pred ccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCc
Confidence 9999533 222111 1458888887754311000 0000 00 000
Q ss_pred cc-----ccccc----------------chHHHhh---hhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCcccccc
Q 020961 197 VG-----VALLT----------------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (319)
Q Consensus 197 ~~-----~g~l~----------------YP~LQAA---DIl~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~ 252 (319)
+. -|.+. ||..+-| |=...+.+.|.=|+|...+--.-..+.+-||
T Consensus 177 ~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG----------- 245 (490)
T 4g6z_A 177 VAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG----------- 245 (490)
T ss_dssp EEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT-----------
T ss_pred EEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC-----------
Confidence 00 01222 2222222 2223468899999999887766666777776
Q ss_pred CCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeecC------CCHHHHHHhhhc
Q 020961 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVSHKFFRR 310 (319)
Q Consensus 253 ~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~------Dspe~I~kKI~~ 310 (319)
++.|+..+. +.|.+- +| +||||.+. .+.|. -.|+.|.+-+..
T Consensus 246 -------~~~P~f~Hl---pLi~~~-~g-~KLSKR~g----~~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 246 -------GEVPVYAHL---PTVLNE-QG-EKMSKRHG----AMSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp -------CCCCEEEEE---CCEECT-TS-SBCCTTTT----CCBHHHHHHTTCCHHHHHHHHHT
T ss_pred -------CCCCeEEEe---cceeCC-CC-CcccCCCC----CcCHHHHHHCCCCHHHHHHHHHH
Confidence 456877665 446665 66 89999984 23332 267777766544
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.34 E-value=2.9e-06 Score=86.39 Aligned_cols=175 Identities=21% Similarity=0.208 Sum_probs=98.8
Q ss_pred EEEeeC--CCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020961 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 81 i~tGi~--PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
+.+=|. |||.+||||...++.+|...+. +..+++-|-|. |+ ....+....+.+++.++|++++ ++++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt-------D~~R~~~e~~~~I~edL~wLGl~wd--~~~~ 167 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT-------DPRRVDPEAYDMIPADLEWLGVEWD--ETVI 167 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCTTHHHHHHHHHHHHTCCCS--EEEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CcccccHHHHHHHHHHHHHcCCCCC--CCcc
Confidence 455554 5699999999999988875554 56677788887 33 2234567788899999999997 6899
Q ss_pred cccchh-hhHHHHH-------HhccCCHHHHhch-----------hcHHHHHH-----hhCC--------------CCcc
Q 020961 157 QSHVRA-HVELMWL-------LSSATPIGWLNKM-----------IQFKEKSH-----KAGG--------------ENVG 198 (319)
Q Consensus 157 QSd~~~-~~el~w~-------L~~~~s~~rL~R~-----------~~~k~~~~-----~~~~--------------~~~~ 198 (319)
||+..+ +.+..-. +.|.++-.++... .+..+... ..|. .+.+
T Consensus 168 qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~ 247 (553)
T 3aii_A 168 QSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPA 247 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGG
T ss_pred cccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCC
Confidence 999643 2222111 3477777766421 11110000 0010 0001
Q ss_pred c----------------cc--ccchHHH---hhhhhccCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCC
Q 020961 199 V----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257 (319)
Q Consensus 199 ~----------------g~--l~YP~LQ---AADIl~~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~ 257 (319)
+ |- ..||..+ +.|....+.|++..|.|...+-..-.-+...++
T Consensus 248 ~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG---------------- 311 (553)
T 3aii_A 248 IRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG---------------- 311 (553)
T ss_dssp GTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT----------------
T ss_pred CCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC----------------
Confidence 0 01 1355544 445566789999999999987766666666665
Q ss_pred ccccCCccccCCCCcccccCCCCCCcCCCCC
Q 020961 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (319)
Q Consensus 258 ~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 288 (319)
++.|...+. ++| .+ +| +|||||+
T Consensus 312 --~~~P~y~H~---~~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 312 --WEPPEFIHY---GRL-KM-DD-VALSTSG 334 (553)
T ss_dssp --CCCCEEECC---CCB-C---------CHH
T ss_pred --CCCCeEEEe---eEE-ec-CC-ceechhh
Confidence 234766654 456 44 66 7999996
No 46
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.31 E-value=2.3e-06 Score=86.42 Aligned_cols=179 Identities=20% Similarity=0.172 Sum_probs=111.1
Q ss_pred EEEee--CCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH-HHHHHHHHHHHHHHHcCCCCCCcE---
Q 020961 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ-QLSKATRETAAIYLACGIDNSKAS--- 153 (319)
Q Consensus 81 i~tGi--~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~-~l~~~~~~~~~~~lA~GlDp~k~~--- 153 (319)
|-|=| .|||.+||||...++.+|..-+. +.++++-|-|. |++ ...+....+.+++.++||++|...
T Consensus 25 vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDt-------D~~R~~~~~~~~I~~~L~wlGl~wDe~p~~~ 97 (512)
T 4gri_A 25 TRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDT-------DQSRYSPEAENDLYSSLKWLGISFDEGPVVG 97 (512)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCC-------CTTSCCHHHHHHHHHHHHHHTCCCSBBTTTB
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCcCCHHHHHHHHHHHHHcCCCCCcCCccC
Confidence 34444 56799999999999999976554 66777778887 332 233566677888899999998632
Q ss_pred ----EEEcccchhhh-HHHH-H------HhccCCHHHHhchhcH-------------------HHHHHh----------h
Q 020961 154 ----VFVQSHVRAHV-ELMW-L------LSSATPIGWLNKMIQF-------------------KEKSHK----------A 192 (319)
Q Consensus 154 ----if~QSd~~~~~-el~w-~------L~~~~s~~rL~R~~~~-------------------k~~~~~----------~ 192 (319)
.|+||+..+.- +..- + +.|.+|-.++++...- .++... +
T Consensus 98 g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~ 177 (512)
T 4gri_A 98 GDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRF 177 (512)
T ss_dssp CTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeee
Confidence 47999864322 1111 1 4589998777543211 111100 0
Q ss_pred C---CCCc-----cccccc-----------------chHHHhhhh---hccCCCEEEecCcchHHHHHHHHHHHHhhhhh
Q 020961 193 G---GENV-----GVALLT-----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLY 244 (319)
Q Consensus 193 ~---~~~~-----~~g~l~-----------------YP~LQAADI---l~~~adivpvG~DQ~~hieLaRdiA~r~n~~y 244 (319)
. ..++ -.|.+. ||..+=|-+ ...+.+.|.-|.|...+--.-.-|.+-|+
T Consensus 178 k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg--- 254 (512)
T 4gri_A 178 KIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK--- 254 (512)
T ss_dssp CCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT---
T ss_pred cccccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC---
Confidence 0 0000 012222 222221111 12478999999999999888888888887
Q ss_pred CCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCC
Q 020961 245 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (319)
Q Consensus 245 g~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 289 (319)
++.|+..+. +.|.+- +| +|+||.+.
T Consensus 255 ---------------~~~P~y~H~---pli~~~-~g-~kLSKR~~ 279 (512)
T 4gri_A 255 ---------------WKPPIYCHL---PMVMGN-DG-QKLSKRHG 279 (512)
T ss_dssp ---------------CCCCEEEEE---CCCBCT-TS-SBCCTTTS
T ss_pred ---------------CCCCeEEec---chhccc-cc-cccCcccc
Confidence 456887776 446665 66 79999974
No 47
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.09 E-value=9e-06 Score=82.77 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=66.1
Q ss_pred ceEEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCCcEEEE
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~-~~l~~~~~~~~~~~lA~GlDp~k~~if~ 156 (319)
.+.=-+=.|||.+||||...++.+|...+. +..+++-|-|. |+ ....+....+.+++.++|++++. .+++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT-------D~~R~~~e~~~~I~edL~wLGl~wde-~~~~ 98 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT-------NPVKEDIEYVESIKNDVEWLGFHWSG-NVRY 98 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSS-SCEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CchhcCHHHHHHHHHHHHHcCCCCCC-CCee
Confidence 344455567799999999999989875554 56778888887 33 23456777889999999999965 4699
Q ss_pred cccchh-hhHHHHH-------HhccCCHHHHh
Q 020961 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (319)
Q Consensus 157 QSd~~~-~~el~w~-------L~~~~s~~rL~ 180 (319)
||+..+ +.+.+-. +.|.++-.++.
T Consensus 99 qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 99 SSDYFDQLHAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence 999643 3332222 33777776654
No 48
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.85 E-value=0.00012 Score=77.82 Aligned_cols=93 Identities=13% Similarity=0.064 Sum_probs=65.0
Q ss_pred EEEeeCCCCcchhhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCCcEEEEccc
Q 020961 81 IVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (319)
Q Consensus 81 i~tGi~PTG~lHLGhylg~l~~~~~lQ~-g~~~~ilIaDlhA~t~~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd 159 (319)
.=-+=.|||.+||||...++.+|..... +..+++-|-|. ++ .....+....+.+++.++||+++. .+++||+
T Consensus 69 tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT----D~--~R~~~e~~~~IledL~wLGl~wde-~~~~qSe 141 (851)
T 2hz7_A 69 TRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT----NP--ELARQEYVDSIADDLKWLGLDWGE-HFYYASD 141 (851)
T ss_dssp EEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CT--TTCCHHHHHHHHHHHHHHTCCCTT-CEEEGGG
T ss_pred EEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Cc--ccccHHHHHHHHHHHHHcCCCCCC-CcccHhh
Confidence 3335567799999999999989876554 56778888887 21 123456778889999999999965 4799999
Q ss_pred chh-hhHHHHH-------HhccCCHHHHh
Q 020961 160 VRA-HVELMWL-------LSSATPIGWLN 180 (319)
Q Consensus 160 ~~~-~~el~w~-------L~~~~s~~rL~ 180 (319)
..+ +.+..-. +.|.++-.++.
T Consensus 142 r~d~y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 142 YFDRYYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp GHHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred hHHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence 643 2222211 34788777664
No 49
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.63 E-value=0.00029 Score=69.94 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=48.4
Q ss_pred ceEEEeeCC--CCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 020961 79 KRIVSGVQP--TGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (319)
Q Consensus 79 ~~i~tGi~P--TG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~~-l~~~~~~~~~~~l 143 (319)
..+.+|--| +|.+||||....+.. +.++++ |++|.+.. .|-|..-. ..++.+ ..++...+.+++.
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345566555 799999999876632 334443 78876643 23332210 123433 3445667888999
Q ss_pred HcCCCCCCcEEEEccc
Q 020961 144 ACGIDNSKASVFVQSH 159 (319)
Q Consensus 144 A~GlDp~k~~if~QSd 159 (319)
++|+++| .++..++
T Consensus 84 ~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 84 LLGIAYD--DFIRTTE 97 (500)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCcccCC
Confidence 9999988 4566666
No 50
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.57 E-value=0.00071 Score=67.21 Aligned_cols=79 Identities=14% Similarity=0.223 Sum_probs=49.6
Q ss_pred ceEEEee--CCCCcchhhhHHHHHHH--HHHHh--ccCcEEEEE-eccceecC-------CCCHH-HHHHHHHHHHHHHH
Q 020961 79 KRIVSGV--QPTGSIHLGNYLGAIKN--WIALQ--NSYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (319)
Q Consensus 79 ~~i~tGi--~PTG~lHLGhylg~l~~--~~~lQ--~g~~~~ilI-aDlhA~t~-------~~~~~-~l~~~~~~~~~~~l 143 (319)
..+.+|- -|||.+||||....+.. +.+++ .|++|.+.. .|-|..-. ..+++ -..++...+.+++.
T Consensus 6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3455554 46699999999876633 34444 377776543 34333211 12343 34556778889999
Q ss_pred HcCCCCCCcEEEEccc
Q 020961 144 ACGIDNSKASVFVQSH 159 (319)
Q Consensus 144 A~GlDp~k~~if~QSd 159 (319)
++|+++| .++..++
T Consensus 86 ~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 86 FLKIEYT--KFIRTTD 99 (497)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCccCCC
Confidence 9999998 4566776
No 51
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.21 E-value=0.00023 Score=72.81 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=29.7
Q ss_pred ceEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 020961 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (319)
Q Consensus 79 ~~i~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i--lIaDl 119 (319)
..-|+|--|+|++||||..+.+ .-+.++.+ |++|++ -|.||
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3457788899999999998766 33445544 788755 67777
No 52
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=96.73 E-value=0.0052 Score=61.27 Aligned_cols=74 Identities=14% Similarity=0.099 Sum_probs=45.2
Q ss_pred CCceE-EEeeCCCCcchhhhHHHHH-----HHHHHHhccCcEEEEE-ecccee--cC-----CCCHHH-HHHHHHHHHHH
Q 020961 77 VKKRI-VSGVQPTGSIHLGNYLGAI-----KNWIALQNSYETLFFI-VDLHAI--TL-----PYDTQQ-LSKATRETAAI 141 (319)
Q Consensus 77 ~~~~i-~tGi~PTG~lHLGhylg~l-----~~~~~lQ~g~~~~ilI-aDlhA~--t~-----~~~~~~-l~~~~~~~~~~ 141 (319)
.++.+ ++|.=|.|.+||||....+ .+|.++ .|++|.+.. .|.|.- +. ..++.+ ..+++..+.++
T Consensus 24 ~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~-~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 24 GKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRM-RGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp TEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHH-cCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34444 4577777999999987765 234333 278876543 333321 00 124433 34566788889
Q ss_pred HHHcCCCCCC
Q 020961 142 YLACGIDNSK 151 (319)
Q Consensus 142 ~lA~GlDp~k 151 (319)
+.++|+.++.
T Consensus 103 ~~~LgI~~d~ 112 (462)
T 3tqo_A 103 EKALRVLSPD 112 (462)
T ss_dssp HHHHTCCCCS
T ss_pred HHHcCCCCCc
Confidence 9999998764
No 53
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=96.52 E-value=0.0077 Score=60.02 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=27.7
Q ss_pred EEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcE--EEEEeccce
Q 020961 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYET--LFFIVDLHA 121 (319)
Q Consensus 82 ~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~--~ilIaDlhA 121 (319)
|+.--|||++|+||...++ .-..++.+ |++| ...|.||=.
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~ 81 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGN 81 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccH
Confidence 5677899999999987765 22334443 7776 557888643
No 54
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=96.40 E-value=0.0029 Score=65.21 Aligned_cols=40 Identities=30% Similarity=0.434 Sum_probs=28.6
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 020961 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i--lIaDl 119 (319)
.=|+|--|+|++|+||..+++ .-+.++.+ |++|+. -|.||
T Consensus 123 ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 123 VEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp EECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred EEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 337899999999999987765 23334433 788755 67887
No 55
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=96.01 E-value=0.021 Score=58.70 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=28.3
Q ss_pred EEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 020961 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (319)
Q Consensus 81 i~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i--lIaDl 119 (319)
=|+|--|+|++|+||..+++ .-+.++.+ |++|+. -|.||
T Consensus 148 e~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 148 EFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp ECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred EecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 36788999999999998766 33444444 788744 67884
No 56
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=95.36 E-value=0.069 Score=53.28 Aligned_cols=77 Identities=5% Similarity=-0.067 Sum_probs=50.3
Q ss_pred CCCCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEEeccc-ee--cC-----CCCHH-HHHHHHHHHHH
Q 020961 75 SSVKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFIVDLH-AI--TL-----PYDTQ-QLSKATRETAA 140 (319)
Q Consensus 75 ~~~~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilIaDlh-A~--t~-----~~~~~-~l~~~~~~~~~ 140 (319)
..+++.|-|.+ -++|.+||||.++.+.. ++++++ |++|.+.-+..| .+ .. ..+++ -..++...+.+
T Consensus 7 ~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~ 86 (542)
T 3u1f_A 7 VEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKK 86 (542)
T ss_dssp CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 33455666663 68999999999886522 333333 899877654444 32 21 23554 34567778889
Q ss_pred HHHHcCCCCCC
Q 020961 141 IYLACGIDNSK 151 (319)
Q Consensus 141 ~~lA~GlDp~k 151 (319)
++.++|++.|.
T Consensus 87 ~~~~lgi~~D~ 97 (542)
T 3u1f_A 87 CFEQMDYSIDY 97 (542)
T ss_dssp HHHHHTCCCSE
T ss_pred HHHHhCCccCc
Confidence 99999999874
No 57
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=95.14 E-value=0.029 Score=56.27 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=51.1
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHH---Hh-ccCcEEE-EEeccceecC--CC------------C-----------
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIA---LQ-NSYETLF-FIVDLHAITL--PY------------D----------- 127 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l~~~~~---lQ-~g~~~~i-lIaDlhA~t~--~~------------~----------- 127 (319)
..++.+|.-|||.+||||...++..++- +. .|+++.+ +-.|.|.-.. |. +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 4566679999999999999888855331 22 3677633 4355554111 00 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCcEEEEccc
Q 020961 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (319)
Q Consensus 128 ~~~l~~~~~~~~~~~lA~GlDp~k~~if~QSd 159 (319)
.+-..++...+.+++.++||++| +|.||+
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 11234567788889999999987 358998
No 58
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=94.76 E-value=0.16 Score=51.16 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=49.0
Q ss_pred CceEEEe-eCCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 020961 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~~-l~~~~~~~~~~~l 143 (319)
+++|.++ .-|||.+||||....+.. +.++++ |++|.+.. .|.|..-. ..++++ ..+....+.+++.
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 98 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA 98 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4444444 356699999999876633 333333 88886644 45454321 224444 3455677888999
Q ss_pred HcCCCCCCcEEEEccc
Q 020961 144 ACGIDNSKASVFVQSH 159 (319)
Q Consensus 144 A~GlDp~k~~if~QSd 159 (319)
++|++++. ++.-++
T Consensus 99 ~lgi~~d~--~~~t~~ 112 (560)
T 3h99_A 99 GFNISYDN--YHSTHS 112 (560)
T ss_dssp HTTCCCSE--EEESSS
T ss_pred HcCCCCCC--ceeCCC
Confidence 99999884 444443
No 59
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=94.52 E-value=0.23 Score=50.22 Aligned_cols=88 Identities=10% Similarity=0.050 Sum_probs=51.7
Q ss_pred CCCCCCCCCceEEEe-eCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHH
Q 020961 70 PVASSSSVKKRIVSG-VQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKAT 135 (319)
Q Consensus 70 ~~~~~~~~~~~i~tG-i~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~~-l~~~~ 135 (319)
+..++..+++.|-+. .-|+|.+||||....+ .-+.++++ |++|.+ .-.|.|..-. ..++++ +.++.
T Consensus 19 ~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~ 98 (564)
T 3kfl_A 19 PGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVS 98 (564)
T ss_dssp -----CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 333443344444333 3588999999998765 23445544 889865 4456665321 124544 44566
Q ss_pred HHHHHHHHHcCCCCCCcEEEEccc
Q 020961 136 RETAAIYLACGIDNSKASVFVQSH 159 (319)
Q Consensus 136 ~~~~~~~lA~GlDp~k~~if~QSd 159 (319)
..+.+++..+|++.|. ++.-++
T Consensus 99 ~~~~~~~~~lgi~~D~--~~~t~~ 120 (564)
T 3kfl_A 99 SEFKQCFQEMNYDMNY--FIRTTN 120 (564)
T ss_dssp HHHHHHHHHTTCCCSE--EEETTS
T ss_pred HHHHHHHHHcCCCCCc--cccCCC
Confidence 7788899999999883 444443
No 60
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=93.93 E-value=0.31 Score=48.69 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=48.9
Q ss_pred ceEEEeeC--CCCcchhhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 020961 79 KRIVSGVQ--PTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (319)
Q Consensus 79 ~~i~tGi~--PTG~lHLGhylg~l~--~~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~~-l~~~~~~~~~~~l 143 (319)
..+.+|-= |+|.+||||..+++. -+.++++ |++|.+ .-.|.|..-. ..++++ ..+....+.+++.
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 105 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAE 105 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34455544 569999999987662 2344443 788865 4455554311 124444 3455677888999
Q ss_pred HcCCCCCCcEEEEccc
Q 020961 144 ACGIDNSKASVFVQSH 159 (319)
Q Consensus 144 A~GlDp~k~~if~QSd 159 (319)
++|+++| .++.-++
T Consensus 106 ~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 106 VLNSSND--DYIRTSE 119 (536)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HcCCCCC--cceeCCC
Confidence 9999988 4455554
No 61
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=93.13 E-value=0.29 Score=51.11 Aligned_cols=74 Identities=14% Similarity=0.269 Sum_probs=49.8
Q ss_pred CceEEEee-CCCCcchhhhHHH-HH--HHHHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHH
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIY 142 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg-~l--~~~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~~-l~~~~~~~~~~~ 142 (319)
++.|.+++ -|+|.+||||.++ .+ .-+.++++ |++|.+.. .|-|..-. ..++++ ..++...+.+++
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45666766 6789999999987 44 33555554 89987755 45554321 235544 445667888899
Q ss_pred HHcCCCCCC
Q 020961 143 LACGIDNSK 151 (319)
Q Consensus 143 lA~GlDp~k 151 (319)
.++|+++|.
T Consensus 83 ~~lgis~D~ 91 (722)
T 1rqg_A 83 QRAKISFDF 91 (722)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCCCCC
Confidence 999999884
No 62
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=90.43 E-value=1.1 Score=44.44 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=45.0
Q ss_pred CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCCc
Q 020961 86 QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKA 152 (319)
Q Consensus 86 ~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~~-l~~~~~~~~~~~lA~GlDp~k~ 152 (319)
-|+|.+||||....+.. +.++++ |++|.++. .|-|..-. ..++.+ .+++...+.+++.++|+++|
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d-- 99 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD-- 99 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--
Confidence 46799999998876622 344433 78876643 33332211 123433 34566788889999999887
Q ss_pred EEEEccc
Q 020961 153 SVFVQSH 159 (319)
Q Consensus 153 ~if~QSd 159 (319)
.++..++
T Consensus 100 ~~~~t~~ 106 (524)
T 2x1l_A 100 RFIRTSD 106 (524)
T ss_dssp EEEETTS
T ss_pred CCeecCC
Confidence 4566666
No 63
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=90.17 E-value=0.28 Score=48.82 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.2
Q ss_pred CCCEEEecCcchHHH
Q 020961 216 QSDFVPVGEDQKQHL 230 (319)
Q Consensus 216 ~adivpvG~DQ~~hi 230 (319)
-+|+...|.||..++
T Consensus 278 p~d~~~~G~D~~~fh 292 (542)
T 3u1f_A 278 PADVHVIGKDILKFH 292 (542)
T ss_dssp SCSEEEEEGGGHHHH
T ss_pred cceEEEecccccccc
Confidence 368999999997754
No 64
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=88.56 E-value=2.2 Score=41.24 Aligned_cols=79 Identities=15% Similarity=0.031 Sum_probs=47.8
Q ss_pred eEEEeeCCCCcchhhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHHHcC
Q 020961 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACG 146 (319)
Q Consensus 80 ~i~tGi~PTG~lHLGhylg~l--~~~~~lQ~--g~~~~i-lIaDlhA~t~-------~~~~~~-l~~~~~~~~~~~lA~G 146 (319)
..++|.=|.|.+||||....+ .-+.++++ |++|.+ .-.|.|..-. ..++.+ ..++...+.+++.++|
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lg 121 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR 121 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 334555556999999987765 22333333 888855 4456654210 124433 3445677888999999
Q ss_pred CC-CCCcEEEEcccc
Q 020961 147 ID-NSKASVFVQSHV 160 (319)
Q Consensus 147 lD-p~k~~if~QSd~ 160 (319)
+. ++ .++..|+.
T Consensus 122 i~~~d--~~~r~t~~ 134 (414)
T 3c8z_A 122 VLPPH--DYVAATDA 134 (414)
T ss_dssp CCCCS--EEEEGGGC
T ss_pred CCCCc--ceecccch
Confidence 98 65 34555553
No 65
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=88.43 E-value=1.4 Score=47.22 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=47.5
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHH-HHHHHHHHHHHHHH
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~~-~l~~~~~~~~~~~l 143 (319)
++.+++++ -|||.+||||.+..+.. +.++++ |++|.+.. -|-|.+-. ..++. -..+++..+.+++.
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~ 133 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLK 133 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 56777776 77899999999876522 334443 78886644 45554421 12343 33456677888999
Q ss_pred HcCCCCC
Q 020961 144 ACGIDNS 150 (319)
Q Consensus 144 A~GlDp~ 150 (319)
++|+..|
T Consensus 134 ~LGis~D 140 (880)
T 4arc_A 134 MLGFGYD 140 (880)
T ss_dssp HTTCCCC
T ss_pred HhCCCcC
Confidence 9998766
No 66
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=88.35 E-value=1.1 Score=44.34 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=46.9
Q ss_pred CCceEEEeeCCC--CcchhhhHHHHHHH--HHHHhc--cCcEEEE--EeccceecC------CCCHHHH-HHHHHHHHHH
Q 020961 77 VKKRIVSGVQPT--GSIHLGNYLGAIKN--WIALQN--SYETLFF--IVDLHAITL------PYDTQQL-SKATRETAAI 141 (319)
Q Consensus 77 ~~~~i~tGi~PT--G~lHLGhylg~l~~--~~~lQ~--g~~~~il--IaDlhA~t~------~~~~~~l-~~~~~~~~~~ 141 (319)
.+..+|.. .|| |.+||||...++.. +.++.+ |++|.+. +.|+-.-+. ..+++++ .++...+.++
T Consensus 21 ~~v~~yv~-gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~ 99 (461)
T 1li5_A 21 GEVGMYVC-GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKD 99 (461)
T ss_dssp TEEEEEEC-CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEEc-CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34455543 566 99999998776522 333332 7887664 344421110 1244443 4456778889
Q ss_pred HHHcCCCCCCcEEEEcccc
Q 020961 142 YLACGIDNSKASVFVQSHV 160 (319)
Q Consensus 142 ~lA~GlDp~k~~if~QSd~ 160 (319)
+.++|+.+.. .+..+|+.
T Consensus 100 ~~~LgI~~~d-~~~r~t~~ 117 (461)
T 1li5_A 100 FDALNILRPD-MEPRATHH 117 (461)
T ss_dssp HHHTTCCCCS-BCCBGGGC
T ss_pred HHHcCCCCCc-ccccccch
Confidence 9999998632 23456653
No 67
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=87.27 E-value=0.45 Score=48.07 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=32.0
Q ss_pred cCCCEEEecCcchHHHHH---HHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (319)
Q Consensus 215 ~~adivpvG~DQ~~hieL---aRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 291 (319)
+.+|+...|.||..++.+ ++-.+ .+ ++.|..++.. .++ .. +| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a--~g------------------~~~~~~v~~h--g~v-~~-~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS--AE------------------LPLPERLVSH--GWW-TK-DH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH--TT------------------CCCCSCEEEE--CCE-EE-TT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh--CC------------------CCCCcEEEEc--ccE-ee-CC-ccccccC---
Confidence 357899999999884222 22222 22 2234444321 344 33 66 7999998
Q ss_pred CCeeec
Q 020961 292 QSRINL 297 (319)
Q Consensus 292 ~s~I~L 297 (319)
+|.|.+
T Consensus 345 GNvV~p 350 (564)
T 3kfl_A 345 GNAFDP 350 (564)
T ss_dssp TCCCCH
T ss_pred CCCCCH
Confidence 678754
No 68
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=87.16 E-value=0.18 Score=50.23 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.3
Q ss_pred cCCCEEEecCcchHH
Q 020961 215 YQSDFVPVGEDQKQH 229 (319)
Q Consensus 215 ~~adivpvG~DQ~~h 229 (319)
+.+|+..+|.||...
T Consensus 264 ~p~di~~~G~D~~~f 278 (524)
T 2x1l_A 264 WPADLHMIGKDIIRF 278 (524)
T ss_dssp CSCSEEEEEGGGHHH
T ss_pred CCCeEEEEeechhHh
Confidence 358999999999853
No 69
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=86.34 E-value=1.7 Score=46.27 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=31.3
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020961 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
.++.|++|. -|||.+|+||.+..+.+ +.+++. |+++.+.. .|-|.+
T Consensus 34 ~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Gl 85 (862)
T 1gax_A 34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGI 85 (862)
T ss_dssp CEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTH
T ss_pred CcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCc
Confidence 356777775 67899999999875532 444444 88887655 466654
No 70
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=86.20 E-value=3.8 Score=41.08 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=44.7
Q ss_pred CceEEE-eeCCCCcchhhhHHHHH-----HHHHHHhccCcEEEE--Eecc---------c--eecC-----CCCHHH-HH
Q 020961 78 KKRIVS-GVQPTGSIHLGNYLGAI-----KNWIALQNSYETLFF--IVDL---------H--AITL-----PYDTQQ-LS 132 (319)
Q Consensus 78 ~~~i~t-Gi~PTG~lHLGhylg~l-----~~~~~lQ~g~~~~il--IaDl---------h--A~t~-----~~~~~~-l~ 132 (319)
++++|+ |-=|.|.+||||....+ .+|.+++ |++|.+. |.|+ | .++. ..++.+ ..
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~-Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~ 120 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFL-GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISE 120 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEBCSCCC-------------------CCHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHc-CCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHH
Confidence 445554 54444999999987755 3343332 8998776 3454 2 2222 124544 45
Q ss_pred HHHHHHHHHHHHcCCCCCC
Q 020961 133 KATRETAAIYLACGIDNSK 151 (319)
Q Consensus 133 ~~~~~~~~~~lA~GlDp~k 151 (319)
+++..+.+++.++|+.++.
T Consensus 121 ~~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 121 FFTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 6777889999999998875
No 71
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=85.38 E-value=0.41 Score=50.39 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=34.2
Q ss_pred cCCCEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adivpvG~DQ~~-hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 293 (319)
+-+|+..+|.||.. |+...+-...-+ ++. .+.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~---~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHHH---cCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 46899999999965 666543222211 121 1124443321 23332 56 7999998 67
Q ss_pred eeecC
Q 020961 294 RINLL 298 (319)
Q Consensus 294 ~I~L~ 298 (319)
.|.+.
T Consensus 658 vv~p~ 662 (810)
T 1wkb_A 658 VLNFI 662 (810)
T ss_dssp CCBHH
T ss_pred cCCHH
Confidence 77653
No 72
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=83.93 E-value=0.36 Score=46.86 Aligned_cols=65 Identities=28% Similarity=0.266 Sum_probs=25.9
Q ss_pred hhhhhccCCCEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCC
Q 020961 209 ASDILLYQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 287 (319)
Q Consensus 209 AADIl~~~adivpvG~DQ~~-hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS 287 (319)
+...+--..|+..+|.|+.. |++...-...-+ +|... -+..+++. .+| .+ +| +|||||
T Consensus 237 ~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~---~g~~~-------------~~~~~~h~--g~v-~~-~G-~KMSKS 295 (414)
T 3c8z_A 237 ALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESV---TGERR-------------FARHYVHT--GMI-GW-DG-HKMSKS 295 (414)
T ss_dssp HHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHH---HCCSC-------------SEEEEEEE--CCB-C-----------
T ss_pred HHHhcCCCceEEEeccccccHHHHHHHHHHHHh---cCCCC-------------cCeEEEEc--CEE-ec-CC-eEcccc
Confidence 34444345799999999887 766554433333 23211 12223321 122 23 56 799999
Q ss_pred CCCCCCeeec
Q 020961 288 APSDQSRINL 297 (319)
Q Consensus 288 ~p~~~s~I~L 297 (319)
. +|.|.+
T Consensus 296 ~---GN~v~~ 302 (414)
T 3c8z_A 296 R---GNLVLV 302 (414)
T ss_dssp -------CBH
T ss_pred c---CCcCCH
Confidence 8 677765
No 73
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=83.22 E-value=0.53 Score=46.53 Aligned_cols=66 Identities=27% Similarity=0.237 Sum_probs=36.3
Q ss_pred HhhhhhccCCCEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCC
Q 020961 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (319)
Q Consensus 208 QAADIl~~~adivpvG~DQ~-~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSK 286 (319)
|+...+--..|+..+|.|+. +|++ .++|..... +|. +.|..+++. .++. + +| +||||
T Consensus 212 m~~~~lg~~~dih~gG~Dl~fpH~~--~~~aq~~a~-~g~--------------~~~~~~~h~--g~v~-~-~G-~KMSK 269 (461)
T 1li5_A 212 MNCKQLGNHFDIHGGGSDLMFPHHE--NEIAQSTCA-HDG--------------QYVNYWMHS--GMVM-V-DR-EKMSK 269 (461)
T ss_dssp HHHHHHCSSEEEEECBGGGTTTHHH--HHHHHHHHH-SSS--------------CCEEEECCB--CCEE-E-TT-BCCCG
T ss_pred HHHHHhCCCceEEeccCccCchHHH--HHHHHHHHh-cCC--------------CCCcEEEEe--eEEE-E-CC-eEccc
Confidence 33444434678999999976 4543 344444321 232 124344431 2332 2 56 79999
Q ss_pred CCCCCCCeeecC
Q 020961 287 SAPSDQSRINLL 298 (319)
Q Consensus 287 S~p~~~s~I~L~ 298 (319)
|. +|.|.+.
T Consensus 270 S~---GN~v~~~ 278 (461)
T 1li5_A 270 SL---GNFFTVR 278 (461)
T ss_dssp GG---TCCCBHH
T ss_pred cC---CCccChh
Confidence 98 6777653
No 74
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=82.96 E-value=0.57 Score=50.43 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=33.6
Q ss_pred cCCCEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCcCCCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (319)
Q Consensus 215 ~~adivpvG~DQ~~-hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 293 (319)
+-+|+..+|.||.. |+...+-...-+ ++.. +.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~---~~~~-------------~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FREE-------------HWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCST-------------TSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHH---cCcc-------------cccceEEEe--eEEee--CC-EEccccc---cC
Confidence 56899999999964 655543222211 2211 124443321 23332 56 7999998 67
Q ss_pred eeec
Q 020961 294 RINL 297 (319)
Q Consensus 294 ~I~L 297 (319)
.|.+
T Consensus 658 vv~p 661 (967)
T 1wz2_A 658 VLNF 661 (967)
T ss_dssp CCBH
T ss_pred CCCH
Confidence 7764
No 75
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=81.43 E-value=0.77 Score=49.26 Aligned_cols=56 Identities=32% Similarity=0.322 Sum_probs=33.3
Q ss_pred ccCCCEEEecCcch---HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCCcCCCCC
Q 020961 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSA 288 (319)
Q Consensus 214 ~~~adivpvG~DQ~---~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P-~-~l~~~~~~~l~~L~dg~~KMSKS~ 288 (319)
.+-+|+...|.||. .|-.+...++- .|.. | . .+.+ .++... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~~-----~g~~---------------Pfk~v~~h---G~V~d~-~G-~KMSKSl 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVAT-----RGVS---------------PYKFLLSH---GFVMDG-EG-KKMSKSL 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHH-----HSSC---------------SBSEEEEE---CCEECT-TS-CCCCSSS
T ss_pred CCCceEEEEEecccccHHHHHHHHHHHh-----hCCC---------------cccceeEe---eeEEcC-CC-cCccccc
Confidence 35689999999997 34455555541 1221 2 2 2322 344432 56 7999998
Q ss_pred CCCCCeeec
Q 020961 289 PSDQSRINL 297 (319)
Q Consensus 289 p~~~s~I~L 297 (319)
+|.|..
T Consensus 601 ---GNvV~P 606 (917)
T 1ffy_A 601 ---GNVIVP 606 (917)
T ss_dssp ---SCCCCH
T ss_pred ---CCcCCh
Confidence 677753
No 76
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=81.22 E-value=0.58 Score=46.73 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=12.0
Q ss_pred CCCEEEecCcchHH
Q 020961 216 QSDFVPVGEDQKQH 229 (319)
Q Consensus 216 ~adivpvG~DQ~~h 229 (319)
.+|+...|.||...
T Consensus 276 p~dv~~~G~D~~~f 289 (536)
T 4dlp_A 276 PANAHIIGKDISRF 289 (536)
T ss_dssp SCSEEEEEGGGHHH
T ss_pred CcceEEeechHHHH
Confidence 57899999999883
No 77
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=80.24 E-value=3.1 Score=44.35 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=45.8
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCH-HHHHHHHHHHHHHHH
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~t~-------~~~~-~~l~~~~~~~~~~~l 143 (319)
++.+.+|+ -|+|.+||||.+..+.. +.++++ |++|.+.. -|-|.+-. ..++ +-..++...+.+++.
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777774 55699999999876522 333433 78887644 34443321 1233 334556778888999
Q ss_pred HcCCCCC
Q 020961 144 ACGIDNS 150 (319)
Q Consensus 144 A~GlDp~ 150 (319)
++|+..|
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 9998655
No 78
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=79.66 E-value=0.72 Score=46.30 Aligned_cols=15 Identities=47% Similarity=0.563 Sum_probs=11.6
Q ss_pred CCCCcCCCCCCCCCCeeec
Q 020961 279 DGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L 297 (319)
+| +|||||. +|.|.+
T Consensus 342 ~G-~KMSKS~---GNvv~p 356 (560)
T 3h99_A 342 NG-AKMSKSR---GTFIKA 356 (560)
T ss_dssp TT-EECCTTT---TCCCBH
T ss_pred CC-eeccccC---CCcCCH
Confidence 56 7999998 677754
No 79
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=78.91 E-value=0.98 Score=47.65 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.8
Q ss_pred cCCCEEEecCcchH
Q 020961 215 YQSDFVPVGEDQKQ 228 (319)
Q Consensus 215 ~~adivpvG~DQ~~ 228 (319)
+-+|+...|.||..
T Consensus 543 ~P~dl~~~G~D~~r 556 (821)
T 1ile_A 543 FPADFIAEGIDQTR 556 (821)
T ss_dssp SSBSBEEEEGGGGG
T ss_pred CCcccccchhhhhc
Confidence 46899999999974
No 80
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=78.58 E-value=0.78 Score=48.90 Aligned_cols=58 Identities=29% Similarity=0.372 Sum_probs=36.4
Q ss_pred cCCCEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCCcCCCCCCCCC
Q 020961 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (319)
Q Consensus 215 ~~adivpvG~DQ~~hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P-~-~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 292 (319)
+-+|+...|.||.. +=.+|.++..... .|. .| . .+.+ .++... +| +|||||. +
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~~-~g~---------------~Pfk~v~~h---G~vld~-~G-~KMSKSl---G 534 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYHF-MGE---------------RPFKTVLLH---GLVLDE-KG-QKMSKSK---G 534 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHHH-SSS---------------CSBSEEEEE---CCEECT-TS-CBCCTTT---T
T ss_pred CCceEEecCccccc-cHHHHHHHHHHHh-cCC---------------CcccEEEEe---eeEEcC-CC-CCccccC---C
Confidence 56899999999975 3457777665432 232 13 2 2333 334443 56 7999998 6
Q ss_pred Ceeec
Q 020961 293 SRINL 297 (319)
Q Consensus 293 s~I~L 297 (319)
|.|..
T Consensus 535 NvIdP 539 (862)
T 1gax_A 535 NVIDP 539 (862)
T ss_dssp CCCCH
T ss_pred CCCCH
Confidence 77754
No 81
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=77.37 E-value=3.5 Score=44.15 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=47.3
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEE-EEeccceecC----------CC--CHHHHH------
Q 020961 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLF-FIVDLHAITL----------PY--DTQQLS------ 132 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~i-lIaDlhA~t~----------~~--~~~~l~------ 132 (319)
.++.+.+|. -|||.+||||.+..+.+ +.+++. |+++.+ .=-|-|.+-. +. ++++.+
T Consensus 48 ~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~ 127 (917)
T 1ffy_A 48 ETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEF 127 (917)
T ss_dssp CBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHH
T ss_pred CceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHH
Confidence 357788887 78999999999876533 444444 888765 4456666531 11 233322
Q ss_pred --HHHHHHHHHHHHcCC--CCCC
Q 020961 133 --KATRETAAIYLACGI--DNSK 151 (319)
Q Consensus 133 --~~~~~~~~~~lA~Gl--Dp~k 151 (319)
++...+.+++..+|+ |.++
T Consensus 128 ~~~~~~~~~~~~~rlG~~~Dwd~ 150 (917)
T 1ffy_A 128 ALEQIELQKKDFRRLGVRGDFND 150 (917)
T ss_dssp HHHHHHHHHHHHHTTTCCSCTTS
T ss_pred HHHHHHHHHHHHHHhCeEEccCC
Confidence 234456677788898 6665
No 82
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=74.61 E-value=3.5 Score=43.28 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=28.6
Q ss_pred CceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020961 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
++.|..|. -|+|.+||||.+..+.. +.+++. |++|.+.. -|.|.+
T Consensus 35 ~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred cEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 45555555 56899999999886622 444443 78886643 344443
No 83
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=72.62 E-value=0.94 Score=45.24 Aligned_cols=59 Identities=29% Similarity=0.410 Sum_probs=25.7
Q ss_pred ccCCCEEEecCcchH---HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCC-CCCCcCCCCCC
Q 020961 214 LYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAP 289 (319)
Q Consensus 214 ~~~adivpvG~DQ~~---hieLaRdiA~r~n~~yg~~~~~~~~~~~~~~~~~P~~l~~~~~~~l~~L~-dg~~KMSKS~p 289 (319)
.+..++-++|.|+.. ......+++.. .+|. +.|..++. .+|.. . +| +|||||.
T Consensus 228 ~l~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG~--------------~~p~~~h~---~~i~~-~g~g-~KmSKs~- 284 (523)
T 1irx_A 228 HFGVDFEPAGKDHLVAGSSYDTGKEIIKE---VYGK--------------EAPLSLMY---EFVGI-KGQK-GKMSGSK- 284 (523)
T ss_dssp HSCCCBCCEEHHHHSTTSHHHHHHHHHHH---HHCC--------------CCCBCCEE---CCEEE-SCC----------
T ss_pred HcCCCCcCCCcCccCCCcchhhHHHHHHH---HhCC--------------CCCeEEEE---EEEEe-CCCC-CCCCCcC-
Confidence 345555689999887 23344666631 2342 23554444 33433 2 24 7999998
Q ss_pred CCCCeeec
Q 020961 290 SDQSRINL 297 (319)
Q Consensus 290 ~~~s~I~L 297 (319)
++.|.+
T Consensus 285 --Gn~i~~ 290 (523)
T 1irx_A 285 --GNVILL 290 (523)
T ss_dssp ---CCCCH
T ss_pred --CCCCCH
Confidence 566644
No 84
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=71.80 E-value=2 Score=43.10 Aligned_cols=32 Identities=22% Similarity=0.089 Sum_probs=20.3
Q ss_pred HHhhhhhccCCCEEEecCcc-hHHHHHHHHHHH
Q 020961 207 LMASDILLYQSDFVPVGEDQ-KQHLELTRELAE 238 (319)
Q Consensus 207 LQAADIl~~~adivpvG~DQ-~~hieLaRdiA~ 238 (319)
-|+...|--..|+..+|.|. .+|++--.-...
T Consensus 244 am~~~~lg~~~DIH~gG~DLifpHheneiAqs~ 276 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIGVHHINEIAIAE 276 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHH
T ss_pred HHHHHHcCCCceEEeeccccccchHHHHHHHHH
Confidence 34455554467999999996 467665433333
No 85
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=69.54 E-value=2 Score=45.23 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020961 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
.++.++.|. -|||.+||||.++.+.+ +.+++. |+++.+.. -|-|.+
T Consensus 38 ~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp CBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred CcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 356777777 78999999999875522 334443 88876644 455554
No 86
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=68.08 E-value=2.3 Score=45.34 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.9
Q ss_pred cCCCEEEecCcc-hHHHHHHHHHHHH
Q 020961 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (319)
Q Consensus 215 ~~adivpvG~DQ-~~hieLaRdiA~r 239 (319)
+-+|+..+|.|| .-|+-.+|-+..-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~ 555 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKF 555 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHH
Confidence 569999999999 6777777776653
No 87
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=61.29 E-value=4.9 Score=42.94 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=21.4
Q ss_pred ccCCCEEEecCcc-hHHHHHHHHHHHHhh
Q 020961 214 LYQSDFVPVGEDQ-KQHLELTRELAERVN 241 (319)
Q Consensus 214 ~~~adivpvG~DQ-~~hieLaRdiA~r~n 241 (319)
.+-+|+-.+|.|| .-|+..+|-...-+.
T Consensus 541 ~~PvD~yigG~EHailHllyaRf~~~~L~ 569 (880)
T 4arc_A 541 WLPVDIYIGGIEHAIMHLLYFRFFHKLMR 569 (880)
T ss_dssp HCSEEEEECCGGGTTTHHHHHHHHHHHHH
T ss_pred cCCceEeecchhhHHHHHHHHHHHHHHHH
Confidence 3568999999999 568888886654443
No 88
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=59.15 E-value=4.2 Score=43.75 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCceEEEee-CCCCcchhhhHHHHHHH--HHHHhc--cCcEEEEE-ecccee
Q 020961 77 VKKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI 122 (319)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhylg~l~~--~~~lQ~--g~~~~ilI-aDlhA~ 122 (319)
.++.++.|. -|||.+|+||.+..+.+ +.+++. |++|.+.. -|-|.+
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~Gl 85 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSS
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCc
Confidence 367888887 67899999999875522 444443 78876643 344443
No 89
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=51.75 E-value=48 Score=30.34 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=57.6
Q ss_pred CceEEEeeCCCCcchhhhHHHHHHHHHHHhccC-cEEEEEeccceecC----CCCHHHHHHHH--------HHHHHHHHH
Q 020961 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYLA 144 (319)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~-~~~ilIaDlhA~t~----~~~~~~l~~~~--------~~~~~~~lA 144 (319)
...++.||-|=-.-|=+.++-.+..|. +..+ +|.|+++|.++--+ ..++.+.++.+ +.+...+.+
T Consensus 29 g~HallGISpgNsyFs~d~L~~Li~Wa--~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~~ 106 (257)
T 3oqi_A 29 RRHVLVGISPFNSRFSEDYIHRLIAWA--VREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALEA 106 (257)
T ss_dssp TCEEEEEECTTSTTCCHHHHHHHHHHH--HHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998888999999889995 5555 58999999865432 33444333222 345566677
Q ss_pred cCCCCCCcEEEEcccchh
Q 020961 145 CGIDNSKASVFVQSHVRA 162 (319)
Q Consensus 145 ~GlDp~k~~if~QSd~~~ 162 (319)
+|++.+ .++.=||+..
T Consensus 107 ~g~~~~--~v~~~Sd~~~ 122 (257)
T 3oqi_A 107 HGGNPE--DIHTFSDFAN 122 (257)
T ss_dssp HTCCTT--CEEETTTTTT
T ss_pred cCCCcc--cceeHHHhhc
Confidence 799877 5777788743
No 90
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=49.85 E-value=3 Score=41.36 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=6.9
Q ss_pred CCCEE------------EecCcchHHHHH
Q 020961 216 QSDFV------------PVGEDQKQHLEL 232 (319)
Q Consensus 216 ~adiv------------pvG~DQ~~hieL 232 (319)
-+|++ |||.||++|.|-
T Consensus 221 AaDil~~~~d~~~~~~vp~~~d~~~~~~~ 249 (451)
T 3foc_A 221 MLPVYSTYFDGLPFTRVPLPVGTGNEDAA 249 (451)
T ss_dssp HGGGSGGGGTTSGGGCCBCC---------
T ss_pred HHHHHHhhcCCCCccccccccccccchhh
Confidence 48998 999999999543
No 91
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=35.60 E-value=67 Score=29.22 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=59.6
Q ss_pred CCceEEEeeCCCCcchhhhHHHHHHHHHHHhccC-cEEEEEeccceecC----CCCHHHHHHHH--------HHHHHHHH
Q 020961 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYL 143 (319)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhylg~l~~~~~lQ~g~-~~~ilIaDlhA~t~----~~~~~~l~~~~--------~~~~~~~l 143 (319)
+...++.||-|=-.-|=+.++-.+..|. +..+ +|-|+++|.+.--+ ..++.+.++.+ +.+...|.
T Consensus 28 ~g~HallGVSpgNsyFs~drl~~li~Wa--~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~ 105 (247)
T 3oqv_A 28 RGEHALIGISAGNSYFSQKNTVMLLQWA--GQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLE 105 (247)
T ss_dssp CEEEEEEEEESSCTTCCHHHHHHHHHHH--HHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668999999998889999999889995 5554 58999999954322 33443333222 34556677
Q ss_pred HcCCCCCCcEEEEcccchh
Q 020961 144 ACGIDNSKASVFVQSHVRA 162 (319)
Q Consensus 144 A~GlDp~k~~if~QSd~~~ 162 (319)
.+|.+.++..+..=||+..
T Consensus 106 ~~~~~~~~~rv~~~Sd~~~ 124 (247)
T 3oqv_A 106 SVGDHAERFRVRSLSELQE 124 (247)
T ss_dssp HHCTTGGGEEEEEHHHHTT
T ss_pred HhCCCccCceeeeHHHhhC
Confidence 7899988777777788643
No 92
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=32.43 E-value=7.8 Score=40.28 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=18.0
Q ss_pred cCCccccCCCCcccccCCCCCCcCCCCCCCCCCeeec
Q 020961 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (319)
Q Consensus 261 ~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 297 (319)
+.|..++.. .++.. +| +|||||. +|.|..
T Consensus 327 ~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p 355 (722)
T 1rqg_A 327 NLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWV 355 (722)
T ss_dssp CCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBH
T ss_pred CCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCH
Confidence 456555431 23332 56 7999998 688864
No 93
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=29.52 E-value=1.5e+02 Score=23.64 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccC---cEEEEEeccceecC--CCCHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Q 020961 98 GAIKNWIALQNSY---ETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (319)
Q Consensus 98 g~l~~~~~lQ~g~---~~~ilIaDlhA~t~--~~~~~~l~~~~~~~~~~~lA~GlDp~k~~if 155 (319)
..+..+..+-..+ ...|.|.....-++ ..+++.-.+++......++..|++++++.+.
T Consensus 39 ~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~ 101 (148)
T 4erh_A 39 QALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISAR 101 (148)
T ss_dssp HHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 3455555443333 34454443322233 2355666677777777778889999886544
Done!