BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020962
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 533 bits (1373), Expect = e-152, Method: Compositional matrix adjust.
Identities = 245/269 (91%), Positives = 260/269 (96%)
Query: 51 RKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLV 110
RKPV+V FGRNY+PTWAFDHIKYFNGG+EIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLV
Sbjct: 10 RKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLV 69
Query: 111 PGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDP 170
PGDSAG+VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDP
Sbjct: 70 PGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDP 129
Query: 171 TKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRG 230
TK +H+YSVLWNMY IVF VDD+PIRVFKNCKDLGV+FPFNQPMKIYSSLWNADDWATRG
Sbjct: 130 TKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRG 189
Query: 231 GLEKTDWSKAPFIASYKGFHIDGCEASVQAKYCATQGKRWWDQKEFQDLDAFQYRRLKWV 290
GLEKTDWSKAPFIASY+ FHIDGCEASV+AK+CATQG RWWDQKEFQDLDAFQYRRL WV
Sbjct: 190 GLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWV 249
Query: 291 RSKFTIYNYCTDRSRFPVLPPECRRDRDI 319
R K+TIYNYCTDRSR+P +PPEC+RDRDI
Sbjct: 250 RQKYTIYNYCTDRSRYPSMPPECKRDRDI 278
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 114/295 (38%), Positives = 158/295 (53%), Gaps = 22/295 (7%)
Query: 30 KIWILLLGILFMVSATMGVPPRKPVNVP--------FGRNYMPTWAFDHIKYFNGGSEIQ 81
I++ LL IL S+ +G P P P F + Y W H + G +
Sbjct: 7 SIFLHLLPILMFSSSCLGQGPPSPGYYPSSQITSLGFDQGYTNLWGPQHQRVDQG--SLT 64
Query: 82 LHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQN---SEHDEIDFEFL 138
+ LD +G+GF+S Y G+F +KL G +AG +T+FYLS+ +HDEID EFL
Sbjct: 65 IWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFL 124
Query: 139 GNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVF 198
G G+PY LQTNVF G GDRE RI+LWFDPT+ YH Y++ W +I+FFVDD+PIR +
Sbjct: 125 GTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRY 184
Query: 199 KNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASV 258
D FP +P+ +Y S+W+A WAT G K D+ PF+ Y+ F + C
Sbjct: 185 PRKSD--ATFPL-RPLWVYGSVWDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEA 241
Query: 259 QAKYCATQGKRWWDQKEFQDLDAFQYRRLKWVRSKFTIYNYCTDRSRFPVLPPEC 313
A C + Q Q + A ++WV+ + +YNYC D +R L PEC
Sbjct: 242 -ASSCNPASVSPYGQLSQQQVAA-----MEWVQKNYMVYNYCDDPTRDHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 194 bits (493), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 105/268 (39%), Positives = 148/268 (55%), Gaps = 14/268 (5%)
Query: 49 PPRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMK 108
P + ++ F + Y W H + G + + LD +G+GF+S Y G+F +K
Sbjct: 11 PSSQITSLGFDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIK 68
Query: 109 LVPGDSAGSVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIY 165
L G +AG +T+FYLS+ +HDEID EFLG G+PY LQTNVF G GDRE RI+
Sbjct: 69 LQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIH 128
Query: 166 LWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADD 225
LWFDPT+ YH Y++ W +I+FFVDD+PIR + D FP +P+ +Y S+W+A
Sbjct: 129 LWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPL-RPLWVYGSVWDASS 185
Query: 226 WATRGGLEKTDWSKAPFIASYKGFHIDGCEASVQAKYCATQGKRWWDQKEFQDLDAFQYR 285
WAT G K D+ PF+ Y+ F + C A C + Q Q + A
Sbjct: 186 WATENGKYKADYRYQPFVGKYEDFKLGSCTVEA-ASSCNPASVSPYGQLSQQQVAA---- 240
Query: 286 RLKWVRSKFTIYNYCTDRSRFPVLPPEC 313
++WV+ + +YNYC D +R L PEC
Sbjct: 241 -MEWVQKNYMVYNYCDDPTRDHTLTPEC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 148/273 (54%), Gaps = 19/273 (6%)
Query: 49 PPRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMK 108
P + ++ F + Y W H + G + + LD +G+GF+S Y G+F +K
Sbjct: 10 PSSQITSLGFDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIK 67
Query: 109 LVPGDSAGSVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGKGD-----R 160
L G +AG +T+FYLS+ +HDEID EFLG G+PY LQTNVF G GD R
Sbjct: 68 LQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGR 127
Query: 161 EQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSL 220
E RI+LWFDPT+ YH Y++ W +I+FFVDD+PIR + D FP +PM +Y S+
Sbjct: 128 ELRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPL-RPMWVYGSV 184
Query: 221 WNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVQAKYCATQGKRWWDQKEFQDLD 280
W+A WAT G K D+ PF+ Y+ F + C A C + Q Q +
Sbjct: 185 WDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEA-ASSCNPASVSPYGQLSQQQVA 243
Query: 281 AFQYRRLKWVRSKFTIYNYCTDRSRFPVLPPEC 313
A ++WV+ + +YNYC D +R L PEC
Sbjct: 244 A-----MEWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/273 (38%), Positives = 148/273 (54%), Gaps = 19/273 (6%)
Query: 49 PPRKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMK 108
P + ++ F + Y W H + G + + LD +G+GF+S Y G+F +K
Sbjct: 13 PSSQITSLGFDQGYTNLWGPQHQRVDQG--SLTIWLDSTSGSGFKSINRYRSGYFGANIK 70
Query: 109 LVPGDSAGSVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGKGD-----R 160
L G +AG +T+FYLS+ +HDEID EFLG G+PY LQTNVF G GD R
Sbjct: 71 LQSGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGR 130
Query: 161 EQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSL 220
E RI+LWFDPT+ YH Y++ W +I+FFVDD+PIR + D FP +P+ +Y S+
Sbjct: 131 EMRIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSD--ATFPL-RPLWVYGSV 187
Query: 221 WNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVQAKYCATQGKRWWDQKEFQDLD 280
W+A WAT G K D+ PF+ Y+ F + C A C + Q Q +
Sbjct: 188 WDASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEA-ASSCNPASVSPYGQLSQQQVA 246
Query: 281 AFQYRRLKWVRSKFTIYNYCTDRSRFPVLPPEC 313
A ++WV+ + +YNYC D +R L PEC
Sbjct: 247 A-----MEWVQKNYMVYNYCDDPTRDHTLTPEC 274
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 24/172 (13%)
Query: 66 WAFDHIKYFNGGSEIQLHL-----DKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTA 120
WAFDH+ + G E++L L +K+ G G QS +Y +G + + MK P + G V+A
Sbjct: 21 WAFDHVSMTSLG-EMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK--PAKNVGIVSA 77
Query: 121 FYLSSQNSEH---DEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHFY 177
FY S+ ++ DEID EFLG T + +Q N +T G G+ E+ + L FD +YH Y
Sbjct: 78 FYTSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANSYHTY 134
Query: 178 SVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLW---NADDW 226
+ W I ++VD K P KIY SLW D+W
Sbjct: 135 AFDWQPNSIKWYVDG-------QLKHTATTQIPQTPGKIYMSLWAGAGVDEW 179
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 24/173 (13%)
Query: 65 TWAFDHIKYFNGGSEIQLHL-----DKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVT 119
TW +++ + N G +++L L +K+ ++S Y +G + + MK P + G V+
Sbjct: 31 TWRANNVNFTNDG-KLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVS 87
Query: 120 AFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHF 176
+F+ + ++ DEID EFLG T + +Q N +T G G E+ I L FD +K +H
Sbjct: 88 SFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHT 144
Query: 177 YSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNA---DDW 226
Y+ W I ++VD V K+ + + P KI +LWN DDW
Sbjct: 145 YAFDWQPGYIKWYVDG----VLKHTATANIP---STPGKIMMNLWNGTGVDDW 190
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 87/173 (50%), Gaps = 24/173 (13%)
Query: 65 TWAFDHIKYFNGGSEIQLHL-----DKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVT 119
TW +++ + N G +++L L +K+ ++S Y +G + + MK P + G V+
Sbjct: 33 TWRANNVNFTNDG-KLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVS 89
Query: 120 AFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHF 176
+F+ + ++ DEID EFLG T + +Q N +T G G E+ I L FD +K +H
Sbjct: 90 SFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHT 146
Query: 177 YSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNA---DDW 226
Y+ W I ++VD V K+ + + P KI +LWN DDW
Sbjct: 147 YAFDWQPGYIKWYVDG----VLKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 92 FQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYL---SSQNSEHDEIDFEFLGNRTGQPYIL 148
++S Y +G + + MK P + G V++F+ + ++ DEID EFLG T + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 149 QTNVFTGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRF 208
Q N +T G G E+ I L FD +K +H Y+ W I ++VD V K+ +
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP- 115
Query: 209 PFNQPMKIYSSLWNA---DDW 226
+ P KI +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 87/173 (50%), Gaps = 24/173 (13%)
Query: 65 TWAFDHIKYFNGGSEIQLHL-----DKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVT 119
TW +++ + N G +++L L +K+ ++S Y +G + + MK P + G V+
Sbjct: 33 TWRANNVNFTNDG-KLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVS 89
Query: 120 AFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHF 176
+F+ + ++ D+ID +FLG T + +Q N +T G G E+ I L FD +K +H
Sbjct: 90 SFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHT 146
Query: 177 YSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNA---DDW 226
Y+ W I ++VD V K+ + + P KI +LWN DDW
Sbjct: 147 YAFDWQPGYIKWYVDG----VLKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 92 FQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYL---SSQNSEHDEIDFEFLGNRTGQPYIL 148
++S Y +G + + MK P + G V++F+ + ++ DEID EFLG T + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 149 QTNVFTGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRF 208
Q N +T G G E+ I L FD +K +H Y+ W I ++VD V K+ +
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP- 115
Query: 209 PFNQPMKIYSSLWNA---DDW 226
+ P KI +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 92 FQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYL---SSQNSEHDEIDFEFLGNRTGQPYIL 148
++S Y +G + + MK P + G V++F+ + ++ DEID EFLG T + +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 149 QTNVFTGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRF 208
Q N +T G G E+ I L FD +K +H Y+ W I ++VD V K+ +
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP- 115
Query: 209 PFNQPMKIYSSLWNA---DDW 226
+ P KI +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 18/136 (13%)
Query: 97 SYLFGHFSMQMKLVPGDSAGSVTAFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVF 153
+Y +G + ++MK P + G V++F+ + + DEID EFLG T + +Q N +
Sbjct: 93 TYGYGLYEVRMK--PAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYY 147
Query: 154 TGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQP 213
T G G+ E+ + L FD AYH Y+ W I ++VD N + P P
Sbjct: 148 TNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDGQLKHTATN------QIP-TTP 200
Query: 214 MKIYSSLWNA---DDW 226
KI +LWN D+W
Sbjct: 201 GKIMMNLWNGTGVDEW 216
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 97 SYLFGHFSMQMKLVPGDSAGSVTAFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVF 153
+Y +G + + MK P + G V++F+ + + DEID EFLG T + +Q N +
Sbjct: 69 TYGYGLYEVNMK--PAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGKDTTK---VQFNYY 123
Query: 154 TGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQP 213
T G G+ E+ + L FD +YH Y+ W I ++VD K P
Sbjct: 124 TNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG-------QLKHTATTQIPQTP 176
Query: 214 MKIYSSLWNA---DDW 226
KI +LWN D+W
Sbjct: 177 GKIMMNLWNGAGVDEW 192
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 16/119 (13%)
Query: 114 SAGSVTAFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDP 170
+ G V++F+ + ++ DEID EFLG T + +Q N +T G G E+ I L FD
Sbjct: 1 NTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDA 57
Query: 171 TKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNA---DDW 226
+K +H Y+ W I ++VD V K+ + + P KI +LWN DDW
Sbjct: 58 SKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP---STPGKIMMNLWNGTGVDDW 109
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 87 YTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSS---QNSEHDEIDFEFLGNRTG 143
Y G ++++ + +G + ++MK P + G V++F+ + + DEID EFLG T
Sbjct: 79 YAGAEYRTRDKFGYGLYQVRMK--PAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTT 136
Query: 144 QPYILQTNVFTGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKD 203
+ +Q N +T G+ E L FD ++ +H Y+ W I + VD V++ D
Sbjct: 137 K---VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDG--EEVYRAYDD 191
Query: 204 LGVRFPFNQPMKIYSSLW---NADDW 226
+ V P KI ++W D+W
Sbjct: 192 IPV-----HPGKIMLNIWPGIGVDEW 212
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 14/100 (14%)
Query: 65 TWAFDHIKYFNGGSEIQLHL-----DKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVT 119
TW +++ + N G +++L L +K+ ++S Y +G + + MK P + G V+
Sbjct: 121 TWRANNVNFTNDG-KLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVS 177
Query: 120 AFYL---SSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGG 156
+F+ + ++ DEID EFLG T + +Q N +T G
Sbjct: 178 SFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG 214
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 158 GDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIY 217
G E+ I L FD +K +H Y+ W I ++VD V K+ + + P KI
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDG----VLKHTATANIP---STPGKIM 54
Query: 218 SSLWNA---DDW 226
+LWN DDW
Sbjct: 55 MNLWNGTGVDDW 66
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 162 QRIYLWFDPT--KAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSS 219
Q++ L D +Y F VL + Q + VD + + DL PF P KIYS+
Sbjct: 9 QKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSA 68
Query: 220 LWN 222
++
Sbjct: 69 EYS 71
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 174 YHFYSVLWNMYQIVFFVDD-----IPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWAT 228
+H Y++ W +I +FVDD P N + +PF+QP + ++ W
Sbjct: 167 FHVYAIEWTPEEIRWFVDDSLYYRFPNERLTNPEADWRHWPFDQPFHLIMNIAVGGTWGG 226
Query: 229 RGGLE 233
+ G++
Sbjct: 227 QQGVD 231
>pdb|1NRK|A Chain A, Ygfz Protein
Length = 328
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 208 FPFNQPM---KIYSSLWNADDWA--TRGGLEKTDWSKAPFIASYKGFHIDGCEASVQAKY 262
FP QP ++ +L DDWA T G + + + A D + A +
Sbjct: 9 FPPRQPTASARLPLTLXTLDDWALATITGADSEKYXQGQVTADVSQXAED---QHLLAAH 65
Query: 263 CATQGKRWWDQKEFQDLDAFQYRRLKWVRS-------KFTIYNYCT 301
C +GK W + + F+D D F + + VR K+ +++ T
Sbjct: 66 CDAKGKXWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVT 111
>pdb|1VLY|A Chain A, Crystal Structure Of A Putative Aminomethyltransferase
(Ygfz) From Escherichia Coli At 1.30 A Resolution
Length = 338
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 208 FPFNQPM---KIYSSLWNADDWA--TRGGLEKTDWSKAPFIASYKGFHIDGCEASVQAKY 262
FP QP ++ +L DDWA T G + + + A D + A +
Sbjct: 18 FPPRQPTASARLPLTLXTLDDWALATITGADSEKYXQGQVTADVSQXAED---QHLLAAH 74
Query: 263 CATQGKRWWDQKEFQDLDAFQYRRLKWVRS-------KFTIYNYCT 301
C +GK W + + F+D D F + + VR K+ +++ T
Sbjct: 75 CDAKGKXWSNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKVT 120
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 85 DKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLS------SQNSEHDEI 133
+K G GF+ G GH+ K++ +AG YL+ +Q E DEI
Sbjct: 28 EKSAGIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIIYLADLAAYLNQKGELDEI 82
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 24/122 (19%)
Query: 100 FGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGD 159
+G+F ++ KL G + + Q+ +D F +TG+ IL+T F K
Sbjct: 128 YGYFEIRAKLSNTGGGGHQAWWMVGMQDDTNDW----FNSKQTGEIDILET--FFSKKDT 181
Query: 160 REQRIYLWFDP------------------TKAYHFYSVLWNMYQIVFFVDDIPIRVFKNC 201
Y W DP T YH Y++ W + F+ D+ +V
Sbjct: 182 WRIAAYGWNDPNFQTSWTISEDKVPSGDPTSEYHIYAMEWTPTALKFYYDNELFKVIYGS 241
Query: 202 KD 203
D
Sbjct: 242 PD 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,666,845
Number of Sequences: 62578
Number of extensions: 477184
Number of successful extensions: 1124
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1078
Number of HSP's gapped (non-prelim): 24
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)