Query 020962
Match_columns 319
No_of_seqs 362 out of 1668
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 1.7E-86 3.7E-91 627.5 34.1 267 51-317 20-290 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 6.9E-85 1.5E-89 611.3 32.4 259 55-313 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 9.7E-44 2.1E-48 322.4 25.1 175 65-253 13-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 5.9E-37 1.3E-41 278.1 24.4 172 64-252 27-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 4E-35 8.7E-40 257.9 19.8 174 60-250 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 7.2E-33 1.6E-37 247.8 23.3 172 63-252 24-210 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 3.1E-32 6.8E-37 254.3 22.3 177 68-252 57-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 7.2E-32 1.6E-36 247.0 22.5 177 65-252 34-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 2E-29 4.3E-34 237.7 22.0 170 68-252 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 5.5E-29 1.2E-33 237.4 20.3 181 65-252 37-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 8.1E-29 1.8E-33 231.4 20.8 182 65-252 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 2.2E-27 4.8E-32 229.6 19.7 139 87-227 99-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 3E-27 6.5E-32 227.9 17.5 136 87-224 96-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 1E-24 2.2E-29 212.7 19.3 175 64-249 74-262 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 3.2E-21 6.8E-26 139.1 4.4 50 263-313 1-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.6 1.7E-14 3.7E-19 145.5 14.2 182 75-265 166-464 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.5 5.5E-13 1.2E-17 127.1 13.2 148 75-227 47-251 (293)
18 PF09264 Sial-lect-inser: Vibr 94.5 0.35 7.6E-06 44.0 9.7 96 81-198 10-120 (198)
19 PF13385 Laminin_G_3: Concanav 92.7 2.9 6.4E-05 33.8 11.8 66 171-254 84-149 (157)
20 smart00560 LamGL LamG-like jel 89.3 11 0.00025 31.3 14.7 70 170-256 59-130 (133)
21 PF06439 DUF1080: Domain of Un 88.2 5.6 0.00012 34.3 10.0 109 87-201 41-156 (185)
22 smart00159 PTX Pentraxin / C-r 87.0 7.8 0.00017 35.1 10.6 73 171-254 89-163 (206)
23 smart00210 TSPN Thrombospondin 85.9 12 0.00026 33.2 11.0 88 102-199 55-144 (184)
24 cd00152 PTX Pentraxins are pla 82.2 15 0.00032 33.0 10.1 73 170-253 88-162 (201)
25 PF10287 DUF2401: Putative TOS 79.6 7.2 0.00016 36.7 7.2 104 75-184 65-207 (235)
26 PF14099 Polysacc_lyase: Polys 70.5 55 0.0012 29.4 10.5 76 164-251 144-224 (224)
27 PF09224 DUF1961: Domain of un 67.6 17 0.00037 33.9 6.4 58 173-251 160-218 (218)
28 cd00110 LamG Laminin G domain; 67.6 66 0.0014 26.2 17.1 85 99-197 20-105 (151)
29 PF02210 Laminin_G_2: Laminin 47.3 1.3E+02 0.0029 23.3 9.9 75 171-253 53-127 (128)
30 smart00282 LamG Laminin G doma 41.5 1.1E+02 0.0023 24.8 6.6 28 171-198 61-88 (135)
31 PF00354 Pentaxin: Pentaxin fa 40.9 2.7E+02 0.0059 25.0 9.8 71 171-252 83-155 (195)
32 PF11948 DUF3465: Protein of u 35.2 2.8E+02 0.0061 24.0 8.1 68 68-152 34-111 (131)
33 cd00070 GLECT Galectin/galacto 30.5 1.6E+02 0.0034 24.3 5.9 47 153-200 58-105 (127)
34 KOG1834 Calsyntenin [Extracell 30.4 58 0.0013 35.3 3.9 52 171-227 441-492 (952)
35 PF07172 GRP: Glycine rich pro 23.8 64 0.0014 26.1 2.3 22 28-49 5-26 (95)
36 PF02973 Sialidase: Sialidase, 23.1 5.8E+02 0.013 23.3 13.7 103 132-256 73-177 (190)
37 KOG1277 Endosomal membrane pro 22.5 1.4E+02 0.0031 31.2 4.9 48 130-189 161-208 (593)
38 PF15183 MRAP: Melanocortin-2 21.1 1.1E+02 0.0024 24.6 3.0 24 21-45 40-63 (90)
39 cd06526 metazoan_ACD Alpha-cry 20.9 2.2E+02 0.0049 21.5 4.8 54 65-121 17-70 (83)
40 PF06832 BiPBP_C: Penicillin-B 20.4 1.2E+02 0.0026 23.4 3.1 35 185-221 44-78 (89)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=1.7e-86 Score=627.48 Aligned_cols=267 Identities=47% Similarity=0.928 Sum_probs=250.2
Q ss_pred CCCcccccccCccccccCCCeEEecCCcEEEEEEcCCCeeEEEEcceeEEEEEEEEEEecCCCCCceEEEEEEeecCCCC
Q 020962 51 RKPVNVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEH 130 (319)
Q Consensus 51 ~~~~~~~f~~~f~~~w~~~~v~~~~~G~~l~L~ld~~sga~i~Sk~~~~yG~fEariKlp~g~saG~v~AFwl~s~~~~~ 130 (319)
+.++..+|.++|.++|+.+|+.+.++|+.|+|+||+.+|++|+||..|+||+||||||||+|+++|+||||||++.++.|
T Consensus 20 ~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~ 99 (291)
T PLN03161 20 RSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRH 99 (291)
T ss_pred CCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCC
Confidence 34557899999999999999999888889999999999999999999999999999999999889999999999977789
Q ss_pred CeEEEEEcCCCCCCceEEecceeeCCCCCcceeEEccCCCCCCcEEEEEEEcCceEEEEECCeEEEEEecccCCCCCCCC
Q 020962 131 DEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPF 210 (319)
Q Consensus 131 dEIDiEflGn~~g~p~~vqTNv~~~G~g~req~~~l~fDpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~~g~~~P~ 210 (319)
|||||||||+.+++|+++|||+|.+|.++|++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..|.+||+
T Consensus 100 dEIDiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~ 179 (291)
T PLN03161 100 DEIDFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPN 179 (291)
T ss_pred CeEEEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987777889998
Q ss_pred CCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEeeeecCCC--CcccccC-CCccccccccCCCCHHHHHHH
Q 020962 211 NQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVQ--AKYCATQ-GKRWWDQKEFQDLDAFQYRRL 287 (319)
Q Consensus 211 ~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~~v~~c~~~~~--~~~c~~~-~~~~~~~~~~~~l~~~~~~~~ 287 (319)
++||+|++|||+|++|||+||++||||+++||+|.|++|+++||.++++ ...|... +..||+++.|++|+++|+++|
T Consensus 180 ~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~ 259 (291)
T PLN03161 180 KQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNWWTSPSYSQLTNAQLTQM 259 (291)
T ss_pred ccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCccccccCccccCCCHHHHHHH
Confidence 8999999999999999999999999999999999999999999987643 3479754 467999999999999999999
Q ss_pred HHHhhcCeeeecccCCCCCCC-CCCCCcCCC
Q 020962 288 KWVRSKFTIYNYCTDRSRFPV-LPPECRRDR 317 (319)
Q Consensus 288 ~~~~~~~~~y~yc~d~~r~~~-~p~ec~~~~ 317 (319)
+|||+||||||||+|++|||+ +||||.++.
T Consensus 260 ~~v~~~~m~Y~YC~D~~R~~~~~p~EC~~~~ 290 (291)
T PLN03161 260 KKVRDNFMIYDYCKDTKRFNGVMPPECFKPQ 290 (291)
T ss_pred HHHHhCcEEEeccCCCCcCCCCcCcccCCCc
Confidence 999999999999999999999 899998753
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=6.9e-85 Score=611.33 Aligned_cols=259 Identities=58% Similarity=1.129 Sum_probs=246.2
Q ss_pred ccccccCccccccCCCeEEecCCcEEEEEEcCCCeeEEEEcceeEEEEEEEEEEecCCCCCceEEEEEEeecC-CCCCeE
Q 020962 55 NVPFGRNYMPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQN-SEHDEI 133 (319)
Q Consensus 55 ~~~f~~~f~~~w~~~~v~~~~~G~~l~L~ld~~sga~i~Sk~~~~yG~fEariKlp~g~saG~v~AFwl~s~~-~~~dEI 133 (319)
+.+|.++|.++|+++|++++++|+.|+|+||+++||+|+||..|+||+||||||||+|+++|+||||||++++ +.+|||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 4689999999999999999988999999999999999999999999999999999999889999999999987 889999
Q ss_pred EEEEcCCCCCCceEEecceeeCCCCCcceeEEccCCCCCCcEEEEEEEcCceEEEEECCeEEEEEecccCCCCCCCCCCC
Q 020962 134 DFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQP 213 (319)
Q Consensus 134 DiEflGn~~g~p~~vqTNv~~~G~g~req~~~l~fDpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~~g~~~P~~~P 213 (319)
|||+||+.+|+|+++|||+|.+|.+++++++.++|||+++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777889997799
Q ss_pred cEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEeeeecCCCCcccccCC-CccccccccCCCCHHHHHHHHHHhh
Q 020962 214 MKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVQAKYCATQG-KRWWDQKEFQDLDAFQYRRLKWVRS 292 (319)
Q Consensus 214 m~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~~v~~c~~~~~~~~c~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~ 292 (319)
|+|++|||+||+|||+||++|+||+++||+|.|++|+|++|.+++....|.... ..||+.+.+++|+++|+++|+|||+
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 242 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEWVRR 242 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876555675443 6799999999999999999999999
Q ss_pred cCeeeecccCCCCCCCCCCCC
Q 020962 293 KFTIYNYCTDRSRFPVLPPEC 313 (319)
Q Consensus 293 ~~~~y~yc~d~~r~~~~p~ec 313 (319)
||||||||+|++|||.+||||
T Consensus 243 ~~~~y~yC~d~~r~~~~p~ec 263 (263)
T cd02176 243 NYMVYDYCDDRKRYPVPPPEC 263 (263)
T ss_pred CCEEEecCCCCCcCCCCcCCC
Confidence 999999999999999999999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=9.7e-44 Score=322.43 Aligned_cols=175 Identities=30% Similarity=0.564 Sum_probs=153.4
Q ss_pred cccCCCeEEecCCcEEEEEEcCC-CeeEEEEcceeEEEEEEEEEEecCCCCCceEEEEEEeecCCCCCeEEEEEcCCCCC
Q 020962 65 TWAFDHIKYFNGGSEIQLHLDKY-TGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTG 143 (319)
Q Consensus 65 ~w~~~~v~~~~~G~~l~L~ld~~-sga~i~Sk~~~~yG~fEariKlp~g~saG~v~AFwl~s~~~~~dEIDiEflGn~~g 143 (319)
+...++|.+.. ++|+|+|++. +|++|+|+++|+||+||||||+|.+ +|+||||||+++ .++|||||++|+
T Consensus 13 ~~~~~~~~~~~--~~~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~--- 83 (203)
T cd02183 13 TVTSGTVDYDD--DGASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG--- 83 (203)
T ss_pred EecCCcEeECC--CeEEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC---
Confidence 34567777753 3599999987 7999999999999999999999998 899999999985 589999999996
Q ss_pred CceEEecceeeCCCC---CcceeEEccCCCCCCcEEEEEEEcCceEEEEECCeEEEEEecccC-CCCCCCCCCCcEEEEE
Q 020962 144 QPYILQTNVFTGGKG---DREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKD-LGVRFPFNQPMKIYSS 219 (319)
Q Consensus 144 ~p~~vqTNv~~~G~g---~req~~~l~fDpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~-~g~~~P~~~Pm~l~ln 219 (319)
++..+|+|++.+|.. ++++.+.+.++++++||+|+|+|+|++|+|||||+++|++++.+. .+.+|| ++||+|++|
T Consensus 84 ~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p-~~P~~l~ln 162 (203)
T cd02183 84 DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYP-QTPMRLQIG 162 (203)
T ss_pred CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCC-CCCcEEEEE
Confidence 456899999987654 456778888999999999999999999999999999999987542 356799 999999999
Q ss_pred eecCCC---------ccCCCCCcccCCCCCCEEEEEeEEEEee
Q 020962 220 LWNADD---------WATRGGLEKTDWSKAPFIASYKGFHIDG 253 (319)
Q Consensus 220 lW~Gg~---------Wat~GG~~~id~s~aPf~a~~~~~~v~~ 253 (319)
+|+||+ || || ++||+.+||+|.|++|+|..
T Consensus 163 ~W~gg~~~~~~g~~~Wa--Gg--~~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 163 IWAGGDPSNAPGTIEWA--GG--ETDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred EecCCCccccCCcccCC--CC--ccCCCCCCEEEEEEEEEEEe
Confidence 999985 99 77 69999999999999999974
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=5.9e-37 Score=278.08 Aligned_cols=172 Identities=33% Similarity=0.628 Sum_probs=148.0
Q ss_pred ccccCCCeEEecCCcEEEEEEcC-------CCeeEEEEcceeEEEEEEEEEEecCCCCCceEEEEEEeecC---CCCCeE
Q 020962 64 PTWAFDHIKYFNGGSEIQLHLDK-------YTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQN---SEHDEI 133 (319)
Q Consensus 64 ~~w~~~~v~~~~~G~~l~L~ld~-------~sga~i~Sk~~~~yG~fEariKlp~g~saG~v~AFwl~s~~---~~~dEI 133 (319)
.+|.++||.+. +| .|+|++.+ ++||+|.|+.+|+||+||||||+|.+ +|+|+||||++.. +.++||
T Consensus 27 ~~~~~~nv~v~-~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EI 102 (212)
T cd02175 27 CTWSADNVEFS-DG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEI 102 (212)
T ss_pred eeEccccEEEE-CC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEE
Confidence 47889999996 44 58888864 35899999999999999999999987 8999999999742 467999
Q ss_pred EEEEcCCCCCCceEEecceeeCCCCCcceeEEccCCCCCCcEEEEEEEcCceEEEEECCeEEEEEecccCCCCCCCCCCC
Q 020962 134 DFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQP 213 (319)
Q Consensus 134 DiEflGn~~g~p~~vqTNv~~~G~g~req~~~l~fDpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~~g~~~P~~~P 213 (319)
|||++|+.. ..+|+|+|.++.++.+..+.+.+|++++||+|+|+|+|++|+|||||+++++++..+ ..+| ++|
T Consensus 103 DiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p-~~p 175 (212)
T cd02175 103 DIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIP-DTP 175 (212)
T ss_pred EEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCC-CCC
Confidence 999999753 468899998877767777788899999999999999999999999999999998643 3688 899
Q ss_pred cEEEEEeecCC---CccCCCCCcccCCCCCCEEEEEeEEEEe
Q 020962 214 MKIYSSLWNAD---DWATRGGLEKTDWSKAPFIASYKGFHID 252 (319)
Q Consensus 214 m~l~lnlW~Gg---~Wat~GG~~~id~s~aPf~a~~~~~~v~ 252 (319)
|+|++|+|.|+ +|+ | ++|. .+|+.|+|++||++
T Consensus 176 ~~i~~n~w~~~~~~~W~---G--~~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---G--PFDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---C--cCCC-CCCeEEEEEEEEEe
Confidence 99999999985 598 4 4676 89999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=4e-35 Score=257.90 Aligned_cols=174 Identities=36% Similarity=0.660 Sum_probs=150.3
Q ss_pred cCccccccCCCeEEecCCcEEEEEEcC-----CCeeEEEEcceeEEEEEEEEEEecCCCCCceEEEEEEeecC--CCCCe
Q 020962 60 RNYMPTWAFDHIKYFNGGSEIQLHLDK-----YTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQN--SEHDE 132 (319)
Q Consensus 60 ~~f~~~w~~~~v~~~~~G~~l~L~ld~-----~sga~i~Sk~~~~yG~fEariKlp~g~saG~v~AFwl~s~~--~~~dE 132 (319)
+.+.++|.++||.+.++ ..|+|++++ ++||+|+|+..++||+||+|||++.+ .|+||||||.+.. +.++|
T Consensus 3 ~~~~~~~~~~nv~~~~g-~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVEDG-GNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEETT-SEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEcCC-CEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 56788999999999654 579999988 78999999999999999999998876 8999999997532 78999
Q ss_pred EEEEEcCCCCCCceEEecceeeCCCCCc--ceeEEccCCCCCCcEEEEEEEcCceEEEEECCeEEEEEecccCCCCCCCC
Q 020962 133 IDFEFLGNRTGQPYILQTNVFTGGKGDR--EQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPF 210 (319)
Q Consensus 133 IDiEflGn~~g~p~~vqTNv~~~G~g~r--eq~~~l~fDpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~~g~~~P~ 210 (319)
||||++|+.+. .+|+|+|..+.++. +.++.+.+++.++||+|+|+|+|++|+|||||++++++......+.++|+
T Consensus 80 IDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 99999998654 59999999888765 56777888999999999999999999999999999999987654446895
Q ss_pred CCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEE
Q 020962 211 NQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFH 250 (319)
Q Consensus 211 ~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~~ 250 (319)
..||+|.+++|.|++|++..| .|+|||||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 599999999999999986554 57777775
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=7.2e-33 Score=247.80 Aligned_cols=172 Identities=33% Similarity=0.566 Sum_probs=143.6
Q ss_pred cccccCCCeEEecCCcEEEEEEcC------CCeeEEEE-cceeEEEEEEEEEEecCCCCCceEEEEEEeecC---CCCCe
Q 020962 63 MPTWAFDHIKYFNGGSEIQLHLDK------YTGTGFQS-KGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQN---SEHDE 132 (319)
Q Consensus 63 ~~~w~~~~v~~~~~G~~l~L~ld~------~sga~i~S-k~~~~yG~fEariKlp~g~saG~v~AFwl~s~~---~~~dE 132 (319)
...|.++|+.+.++| .|.|++.+ +++|+|.| ++.++||+||+|||++.+ .|+|+||||++.+ +..+|
T Consensus 24 ~~~~~~~nv~~~~~G-~L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDG-GLTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCC-eEEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 346788999997646 58888864 46899999 999999999999999987 8999999999975 56999
Q ss_pred EEEEEcCCCCCCceEEecceeeCCCC-----CcceeEEccCCCCCCcEEEEEEEcCceEEEEECCeEEEEEecccCCCCC
Q 020962 133 IDFEFLGNRTGQPYILQTNVFTGGKG-----DREQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVR 207 (319)
Q Consensus 133 IDiEflGn~~g~p~~vqTNv~~~G~g-----~req~~~l~fDpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~~g~~ 207 (319)
||||++|+. +..+++++|..+.+ .....+.+.+++.++||+|+|+|+|++|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999975 34677777765443 2344556667789999999999999999999999999998752
Q ss_pred CCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEe
Q 020962 208 FPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHID 252 (319)
Q Consensus 208 ~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~~v~ 252 (319)
.| ++||+|++|+|.+++|++ + .+....|..|+|++|+|.
T Consensus 172 ~p-~~p~~i~ln~~~~~~~~~--~---~~~~~~~~~~~Vd~vrvy 210 (210)
T cd00413 172 VP-DDPMNIILNLWSDGGWWW--G---GPPPGAPAYMEIDWVRVY 210 (210)
T ss_pred CC-CCCcEEEEEEEECCCCcc--c---CCCCCCCcEEEEEEEEEC
Confidence 67 899999999999999883 2 345788999999999984
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=3.1e-32 Score=254.27 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=135.8
Q ss_pred CCCeEEecCCcEEEEEEcC-----------CCeeEEEEcceeEEEEEEEEEEecCCCCCceEEEEEEeecC-CCCCeEEE
Q 020962 68 FDHIKYFNGGSEIQLHLDK-----------YTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQN-SEHDEIDF 135 (319)
Q Consensus 68 ~~~v~~~~~G~~l~L~ld~-----------~sga~i~Sk~~~~yG~fEariKlp~g~saG~v~AFwl~s~~-~~~dEIDi 135 (319)
++|+.+. +| .|.|+..+ +++|+|.|++.++||+||||||+|.+ . .+|||||++.+ +.++||||
T Consensus 57 ~~nv~v~-~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~gEIDI 131 (258)
T cd02178 57 ADNVSVE-DG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTTEIDI 131 (258)
T ss_pred cCCeEEE-CC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCCcEEh
Confidence 4677774 46 58888753 35899999999999999999999976 3 57999999964 68999999
Q ss_pred -EEcCCCCC--CceEEecceeeCCCC-----Cc---ceeEEccCCCCCCcEEEEEEEc-CceEEEEECCeEEEEEecccC
Q 020962 136 -EFLGNRTG--QPYILQTNVFTGGKG-----DR---EQRIYLWFDPTKAYHFYSVLWN-MYQIVFFVDDIPIRVFKNCKD 203 (319)
Q Consensus 136 -EflGn~~g--~p~~vqTNv~~~G~g-----~r---eq~~~l~fDpt~dFHtYsI~Wt-p~~I~fyVDG~~ir~~~~~~~ 203 (319)
|++|+..+ .+..+|++++..+.+ .+ ...+...++++++||+|+|+|+ |++|+|||||++++++++.+.
T Consensus 132 ~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~~ 211 (258)
T cd02178 132 LEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSEI 211 (258)
T ss_pred hhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCccc
Confidence 99998632 245688876532221 11 2234456677899999999999 999999999999999987543
Q ss_pred CCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEe
Q 020962 204 LGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHID 252 (319)
Q Consensus 204 ~g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~~v~ 252 (319)
...+|+++||+|+||+++|| |++..+. ...-...|..|+||+|||.
T Consensus 212 -~~~~~f~~p~~liln~avg~-w~g~~~~-~~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 212 -TDGTGFDQPMYIIIDTETYD-WRGEPTD-EELADDSKNTFYVDYVRVY 257 (258)
T ss_pred -CcCCcCCCCeEEEEEecccc-CCCCCCc-cccCCCCCCeEEEEEEEEe
Confidence 34578899999999999998 9832121 1223456999999999986
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=7.2e-32 Score=246.96 Aligned_cols=177 Identities=25% Similarity=0.420 Sum_probs=141.7
Q ss_pred cccCCCeEEecCCcEEEEEEcC----------CCeeEEEE--cceeEEEEEEEEEEecCCCCCceEEEEEEeecC-----
Q 020962 65 TWAFDHIKYFNGGSEIQLHLDK----------YTGTGFQS--KGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQN----- 127 (319)
Q Consensus 65 ~w~~~~v~~~~~G~~l~L~ld~----------~sga~i~S--k~~~~yG~fEariKlp~g~saG~v~AFwl~s~~----- 127 (319)
.+.++|+.+. +| .|.|+..+ +++|+|.| ++.|+||+||||||+|.+ +|++|||||++.+
T Consensus 34 ~~~~~nv~v~-~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~~ 109 (235)
T cd08023 34 TYRPENAYVE-DG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYVG 109 (235)
T ss_pred eCCCCCeEEE-CC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCCC
Confidence 5577899885 45 58887653 35899999 789999999999999987 8999999999864
Q ss_pred -CCCCeEEE-EEcCCCCCCceEEecceeeCCCC----CcceeEEccC-CCCCCcEEEEEEEcCceEEEEECCeEEEEEec
Q 020962 128 -SEHDEIDF-EFLGNRTGQPYILQTNVFTGGKG----DREQRIYLWF-DPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKN 200 (319)
Q Consensus 128 -~~~dEIDi-EflGn~~g~p~~vqTNv~~~G~g----~req~~~l~f-Dpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~ 200 (319)
+..+|||| |++|+. +..+++++|..+.. ..+..+.+.. ++.++||+|+++|+|++|+|||||++++++++
T Consensus 110 w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~~ 186 (235)
T cd08023 110 WPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYTN 186 (235)
T ss_pred CCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEcc
Confidence 45789999 999986 34678888766542 2344565554 78999999999999999999999999999987
Q ss_pred ccCC-CCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEe
Q 020962 201 CKDL-GVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHID 252 (319)
Q Consensus 201 ~~~~-g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~~v~ 252 (319)
.... ...+|+++||+|+||+++|++|+ |. ...-...|..|.|++|||+
T Consensus 187 ~~~~~~~~~~~~~p~~liln~~~gg~w~---g~-~~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 187 PNTDNGGQWPFDQPFYLILNLAVGGNWP---GP-PDDDTPFPATMEVDYVRVY 235 (235)
T ss_pred cccCCcccCCCCCCcEEEEEEEEcCCCC---CC-CCCCCCCCCEEEEEEEEEC
Confidence 5421 12356699999999999999998 31 1344678999999999984
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.97 E-value=2e-29 Score=237.72 Aligned_cols=170 Identities=22% Similarity=0.285 Sum_probs=129.2
Q ss_pred CCCeEEecCCcEEEEEEcC-------------------CCeeEEEEcceeEEEEEEEEEEecC-CCCCceEEEEEEeec-
Q 020962 68 FDHIKYFNGGSEIQLHLDK-------------------YTGTGFQSKGSYLFGHFSMQMKLVP-GDSAGSVTAFYLSSQ- 126 (319)
Q Consensus 68 ~~~v~~~~~G~~l~L~ld~-------------------~sga~i~Sk~~~~yG~fEariKlp~-g~saG~v~AFwl~s~- 126 (319)
++|+.+ .+| .|.|+..+ ++||+++|+..|+|||||||||+++ + +|+||||||+++
T Consensus 43 ~~Nv~v-~dG-~L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNG-ILELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCC-EEEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 467776 456 48887653 3689999999999999999999865 5 899999999985
Q ss_pred -------C-CCCCeEEE-EEcCCC---CCCc----eEEecceeeCCCCC--c--------ceeEEccCCCCCCcEEEEEE
Q 020962 127 -------N-SEHDEIDF-EFLGNR---TGQP----YILQTNVFTGGKGD--R--------EQRIYLWFDPTKAYHFYSVL 180 (319)
Q Consensus 127 -------~-~~~dEIDi-EflGn~---~g~p----~~vqTNv~~~G~g~--r--------eq~~~l~fDpt~dFHtYsI~ 180 (319)
+ |.++|||| |.+|.. .+++ .++|++++.++.+. + .+.+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 1 56899999 888754 1222 35666665554431 1 12456778999999999999
Q ss_pred EcCceEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEeecCC---------CccCCCCCcccCCCCCCEEEEEeEEEE
Q 020962 181 WNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNAD---------DWATRGGLEKTDWSKAPFIASYKGFHI 251 (319)
Q Consensus 181 Wtp~~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW~Gg---------~Wat~GG~~~id~s~aPf~a~~~~~~v 251 (319)
|+|++|+|||||++++++.+ .+. .+||.+.+++-.+. .|+ |+ ..+.+..|-.|+||+|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~------~~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~--~~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPN------KYW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KA--REKASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcC------Ccc-ccccEEeeccccCcchhhhhccccCC--CC--CCccCcCCceEEEEEEEE
Confidence 99999999999999999864 234 78888888875432 254 33 345678999999999998
Q ss_pred e
Q 020962 252 D 252 (319)
Q Consensus 252 ~ 252 (319)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 5
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.96 E-value=5.5e-29 Score=237.42 Aligned_cols=181 Identities=20% Similarity=0.203 Sum_probs=126.7
Q ss_pred cccCCCeEEecCCcEEEEEEcC-------CCeeEEEE--cceeEEEEEEEEEEecCC-CCCceEEEEEEeecC-------
Q 020962 65 TWAFDHIKYFNGGSEIQLHLDK-------YTGTGFQS--KGSYLFGHFSMQMKLVPG-DSAGSVTAFYLSSQN------- 127 (319)
Q Consensus 65 ~w~~~~v~~~~~G~~l~L~ld~-------~sga~i~S--k~~~~yG~fEariKlp~g-~saG~v~AFwl~s~~------- 127 (319)
.+.++|+++. +| .|.|+..+ +++|+|.| |+.|+||+||||||||.+ ...|+||||||+++.
T Consensus 37 ~Y~~~nv~v~-~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~ 114 (295)
T cd02180 37 WYDPDAVTTI-NG-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLA 114 (295)
T ss_pred EecCcCeEec-CC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccc
Confidence 4456788774 56 48887753 57999999 688999999999999963 247999999999852
Q ss_pred ------C------CCCeEEE-EEcCCCC-CCce---EEec----------------ceeeC------C-CCCccee-E--
Q 020962 128 ------S------EHDEIDF-EFLGNRT-GQPY---ILQT----------------NVFTG------G-KGDREQR-I-- 164 (319)
Q Consensus 128 ------~------~~dEIDi-EflGn~~-g~p~---~vqT----------------Nv~~~------G-~g~req~-~-- 164 (319)
| ..+|||| |.+|... +... ++|. .+|.. . .++..++ .
T Consensus 115 ~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 194 (295)
T cd02180 115 TTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISC 194 (295)
T ss_pred cccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccccc
Confidence 2 2489999 9998543 1111 1111 11110 0 0111110 0
Q ss_pred --EccC----CCCCCcEEEEEEEcC-----ceEEEEECCeEEEEEecccC--C----CCCCCCCCCcEEEEEeecCCCcc
Q 020962 165 --YLWF----DPTKAYHFYSVLWNM-----YQIVFFVDDIPIRVFKNCKD--L----GVRFPFNQPMKIYSSLWNADDWA 227 (319)
Q Consensus 165 --~l~f----Dpt~dFHtYsI~Wtp-----~~I~fyVDG~~ir~~~~~~~--~----g~~~P~~~Pm~l~lnlW~Gg~Wa 227 (319)
.+.- ...++||+|+|+|+| ++|+|||||+++++++.... . ..++| ++||+|+||+++||+|+
T Consensus 195 ~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 195 VTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ 273 (295)
T ss_pred ccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC
Confidence 1111 125789999999999 89999999999999986421 1 12456 99999999999999998
Q ss_pred CCCCCcccCCCCCCEEEEEeEEEEe
Q 020962 228 TRGGLEKTDWSKAPFIASYKGFHID 252 (319)
Q Consensus 228 t~GG~~~id~s~aPf~a~~~~~~v~ 252 (319)
|. +.+-...|..|+||+|||+
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 31 3445678999999999996
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.96 E-value=8.1e-29 Score=231.42 Aligned_cols=182 Identities=13% Similarity=0.103 Sum_probs=126.6
Q ss_pred cccCCCeEEecCCcEEEEEEcC-----CCeeEEEEccee--EE----EEEEEEEEecCCC---CCceEEEEEEeecC---
Q 020962 65 TWAFDHIKYFNGGSEIQLHLDK-----YTGTGFQSKGSY--LF----GHFSMQMKLVPGD---SAGSVTAFYLSSQN--- 127 (319)
Q Consensus 65 ~w~~~~v~~~~~G~~l~L~ld~-----~sga~i~Sk~~~--~y----G~fEariKlp~g~---saG~v~AFwl~s~~--- 127 (319)
+.+++|+.+..+| .|.|+..+ +++|+|.|+..+ .| |+||||||+|.+. ..|+||||||++.+
T Consensus 42 ~~~~~n~~v~~dG-~L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNG-TLQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCC-eEEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 4456889886467 57777642 578999998654 33 4999999999741 37999999999852
Q ss_pred -----CCCCeEEE-EEcCCCCCCceEEecceeeC--CCCCccee-EEc-cCCCCCCcEEEEEEEcC-----ceEEEEECC
Q 020962 128 -----SEHDEIDF-EFLGNRTGQPYILQTNVFTG--GKGDREQR-IYL-WFDPTKAYHFYSVLWNM-----YQIVFFVDD 192 (319)
Q Consensus 128 -----~~~dEIDi-EflGn~~g~p~~vqTNv~~~--G~g~req~-~~l-~fDpt~dFHtYsI~Wtp-----~~I~fyVDG 192 (319)
|..+|||| |..|.. +...++.++.. +...++.. ..- ...+.++||+|+|+|++ ++|+|||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvDG 197 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---STGYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLDG 197 (259)
T ss_pred CCCCCCccceeeeeeccCCC---CceEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEECC
Confidence 55689999 999864 33444433332 11111111 100 11235799999999997 999999999
Q ss_pred eEEEEEecccCC---CCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEe
Q 020962 193 IPIRVFKNCKDL---GVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHID 252 (319)
Q Consensus 193 ~~ir~~~~~~~~---g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~~v~ 252 (319)
+++++++..... .-+.|+++||+|+||++.||+|+ |..-...-...|..|+||+|||+
T Consensus 198 ~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 198 VVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred EEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 999999864211 12234589999999999999998 32101123457999999999986
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.95 E-value=2.2e-27 Score=229.62 Aligned_cols=139 Identities=22% Similarity=0.269 Sum_probs=105.1
Q ss_pred CCeeEEEEc--ceeEEEEEEEEEEecCCCCCceEEEEEEeecC------CCCCeEEE-EEcCCCCCCc-------eEEec
Q 020962 87 YTGTGFQSK--GSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQN------SEHDEIDF-EFLGNRTGQP-------YILQT 150 (319)
Q Consensus 87 ~sga~i~Sk--~~~~yG~fEariKlp~g~saG~v~AFwl~s~~------~~~dEIDi-EflGn~~g~p-------~~vqT 150 (319)
+++|+|.|+ +.|+|||||||||||.| .|+||||||++.+ |..+|||| |..|+....+ ..++.
T Consensus 99 ~~Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~ 176 (330)
T cd08024 99 VMSARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGS 176 (330)
T ss_pred eEEEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEE
Confidence 468999994 78999999999999998 7999999999963 56899999 9999864221 12444
Q ss_pred cee-eCCCC-C--cce---eEEccCCCCCCcEEEEEEEcCceEEEEECCeEEEEEeccc-------------------CC
Q 020962 151 NVF-TGGKG-D--REQ---RIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCK-------------------DL 204 (319)
Q Consensus 151 Nv~-~~G~g-~--req---~~~l~fDpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~-------------------~~ 204 (319)
.+| +.... + +.. ......+.+++||+|+|+|+|++|+|||||++++++.... ..
T Consensus 177 tlH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~ 256 (330)
T cd08024 177 TLHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGG 256 (330)
T ss_pred EEEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCccccc
Confidence 444 32111 1 111 1112345678999999999999999999999999998521 01
Q ss_pred CCCCCCCCCcEEEEEeecCCCcc
Q 020962 205 GVRFPFNQPMKIYSSLWNADDWA 227 (319)
Q Consensus 205 g~~~P~~~Pm~l~lnlW~Gg~Wa 227 (319)
+...||++|++|+|||++||.|.
T Consensus 257 ~~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 257 GKMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CcCCCCCCCEEEEEEEEecCCCC
Confidence 24569999999999999999875
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.95 E-value=3e-27 Score=227.93 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=100.5
Q ss_pred CCeeEEEEc--ceeEEEEEEEEEEecCCCCCceEEEEEEeecC-------CCCCeEEE-EEcCCCCC----C---ceEEe
Q 020962 87 YTGTGFQSK--GSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQN-------SEHDEIDF-EFLGNRTG----Q---PYILQ 149 (319)
Q Consensus 87 ~sga~i~Sk--~~~~yG~fEariKlp~g~saG~v~AFwl~s~~-------~~~dEIDi-EflGn~~g----~---p~~vq 149 (319)
+++|+|.|+ ++|+|||||||||||.| .|+||||||++.+ |..+|||| |..||... . ..++|
T Consensus 96 ~~Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~ 173 (321)
T cd02179 96 VVSARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLY 173 (321)
T ss_pred eeeeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEE
Confidence 368999996 78999999999999999 6999999999873 45799999 99998631 1 01233
Q ss_pred cceeeCC-CCCcce---eEEccCCCCCCcEEEEEEEcCceEEEEECCeEEEEEecccC----------------CCCCCC
Q 020962 150 TNVFTGG-KGDREQ---RIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKD----------------LGVRFP 209 (319)
Q Consensus 150 TNv~~~G-~g~req---~~~l~fDpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~----------------~g~~~P 209 (319)
...+... ...+.+ ......+.+++||+|+|+|+|++|+|||||++++++..... .....|
T Consensus 174 ~g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aP 253 (321)
T cd02179 174 GGPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAP 253 (321)
T ss_pred cccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCC
Confidence 2222111 111111 11112356789999999999999999999999999986321 123469
Q ss_pred CCCCcEEEEEeecCC
Q 020962 210 FNQPMKIYSSLWNAD 224 (319)
Q Consensus 210 ~~~Pm~l~lnlW~Gg 224 (319)
|++|++|+|||++||
T Consensus 254 FD~~FyliLNlAVGG 268 (321)
T cd02179 254 FDKEFYLSLGVGVGG 268 (321)
T ss_pred CCCCeEEEEEEEecC
Confidence 999999999999987
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1e-24 Score=212.72 Aligned_cols=175 Identities=24% Similarity=0.433 Sum_probs=139.9
Q ss_pred ccccCCCeEEecCCcEEEEEEcC-------CCeeEEEEcce--eEEEEEEEEEEecCCCCCceEEEEEEeec----CCCC
Q 020962 64 PTWAFDHIKYFNGGSEIQLHLDK-------YTGTGFQSKGS--YLFGHFSMQMKLVPGDSAGSVTAFYLSSQ----NSEH 130 (319)
Q Consensus 64 ~~w~~~~v~~~~~G~~l~L~ld~-------~sga~i~Sk~~--~~yG~fEariKlp~g~saG~v~AFwl~s~----~~~~ 130 (319)
.+|..+++.+..+| .|.|.+++ +++++++|..+ |+||++|||||+|.+ +|+||||||+++ +..+
T Consensus 74 ~~w~~~~~~lt~~~-~l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~wp 150 (355)
T COG2273 74 LTWYVSNVVLTIGG-TLELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGWP 150 (355)
T ss_pred cceeecceeEeeCC-eeeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCCC
Confidence 36667777776544 67887764 68999999977 999999999999966 899999999985 3568
Q ss_pred CeEEEEEcCCCCCCceEEecceeeCCCCCcceeEEccC-CCCCCcEEEEEEEcCceEEEEECCeEEEEEecccCCCCCCC
Q 020962 131 DEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWF-DPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFP 209 (319)
Q Consensus 131 dEIDiEflGn~~g~p~~vqTNv~~~G~g~req~~~l~f-Dpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~~g~~~P 209 (319)
+|||||++|+.+. +..+|+|++.++.++.+....+.+ +..++||+|+++|.++.|+|||||++++++... ...|
T Consensus 151 ~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~~ 225 (355)
T COG2273 151 DEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYIP 225 (355)
T ss_pred cceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccCc
Confidence 9999999997653 346999999999887776666777 888999999999999999999999999999863 3457
Q ss_pred CCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEE
Q 020962 210 FNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGF 249 (319)
Q Consensus 210 ~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~ 249 (319)
+.||++++|+|.++.+.+.-| .......|..+.+..+
T Consensus 226 -~~p~y~~~nl~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 262 (355)
T COG2273 226 -QIPFYVLVNLWMGGYAGGPPG--EALSAGSPLNIDYYRV 262 (355)
T ss_pred -CCcceeEEeecccCccCCCcc--ccccCCcceEeeeeee
Confidence 899999999999987664423 2333444555555443
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.83 E-value=3.2e-21 Score=139.10 Aligned_cols=50 Identities=52% Similarity=1.180 Sum_probs=41.6
Q ss_pred cccCCCccccccccCCCCHHHHHHHHHHhhcCeeeecccCCCCCCCC-CCCC
Q 020962 263 CATQGKRWWDQKEFQDLDAFQYRRLKWVRSKFTIYNYCTDRSRFPVL-PPEC 313 (319)
Q Consensus 263 c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~-p~ec 313 (319)
|++++..||+++.++ |+++|+++|+|||+||||||||+|++|||.+ |+||
T Consensus 1 C~~~~~~w~~~~~~~-L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 1 CSSSSKSWWNQPYAQ-LSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp -TTTTTSGGCSCCCS---HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CcCCCcccccCcccC-CCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 555667899998888 9999999999999999999999999999985 9999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.58 E-value=1.7e-14 Score=145.47 Aligned_cols=182 Identities=22% Similarity=0.316 Sum_probs=121.2
Q ss_pred cCCcEEEEEEcC-------CCeeEEEEcce--eEEEEEEEEEEecCC-CCCceEEEEEEeec-----------C------
Q 020962 75 NGGSEIQLHLDK-------YTGTGFQSKGS--YLFGHFSMQMKLVPG-DSAGSVTAFYLSSQ-----------N------ 127 (319)
Q Consensus 75 ~~G~~l~L~ld~-------~sga~i~Sk~~--~~yG~fEariKlp~g-~saG~v~AFwl~s~-----------~------ 127 (319)
.+| .|.|++++ +.|+.++|-++ |+-|++|++++||.. +..|+|||||++++ +
T Consensus 166 ~~G-~l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~g~WPySY 244 (504)
T PF03935_consen 166 ENG-SLVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTDGMWPYSY 244 (504)
T ss_pred eCC-EEEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccCceecccc
Confidence 345 69999985 46888888654 556999999999843 36899999999865 0
Q ss_pred --------C---------------------------------CCCeEEE-EEcCCCC---CC-ceEEecc----------
Q 020962 128 --------S---------------------------------EHDEIDF-EFLGNRT---GQ-PYILQTN---------- 151 (319)
Q Consensus 128 --------~---------------------------------~~dEIDi-EflGn~~---g~-p~~vqTN---------- 151 (319)
+ ...|||| |-..... |. ...+|..
T Consensus 245 d~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d~~y~~~~ 324 (504)
T PF03935_consen 245 DSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFDIWYRPDY 324 (504)
T ss_pred cccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecccccCCCCCC
Confidence 0 1258999 9754321 11 0122211
Q ss_pred ----eeeCCC-------CCccee-E----Ec---cC--CCCCCcEEEEEEEcCc-----eEEEEECCeEEEEEecccC--
Q 020962 152 ----VFTGGK-------GDREQR-I----YL---WF--DPTKAYHFYSVLWNMY-----QIVFFVDDIPIRVFKNCKD-- 203 (319)
Q Consensus 152 ----v~~~G~-------g~req~-~----~l---~f--Dpt~dFHtYsI~Wtp~-----~I~fyVDG~~ir~~~~~~~-- 203 (319)
+|.... |+.-|+ + .+ +| ....+||+|++||.|. .|+|+|||+++.++.....
T Consensus 325 ~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti~a~Al~~ 404 (504)
T PF03935_consen 325 DFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTINAEALGP 404 (504)
T ss_pred CceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEEEhhhcCC
Confidence 010000 011111 1 11 22 1247899999999864 7999999999999986432
Q ss_pred C----CCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCC--CCEEEEEeEEEEeeeecCCCCccccc
Q 020962 204 L----GVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSK--APFIASYKGFHIDGCEASVQAKYCAT 265 (319)
Q Consensus 204 ~----g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~--aPf~a~~~~~~v~~c~~~~~~~~c~~ 265 (319)
+ ...+| ..||+|++|+....+|+ .+||.. .|.+|.||+|||+.-.-. ..-.|.+
T Consensus 405 ~~~I~~R~Ip-~EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ~~~~-~~vgCDP 464 (504)
T PF03935_consen 405 NPNIGQRPIP-EEPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQPEDA-INVGCDP 464 (504)
T ss_pred CCCcCccccC-cCCceeeeccccccccC------ccccccccccceEEEeEEEEeccCCC-CeeeeCC
Confidence 1 24689 99999999999999997 477754 788999999999854321 1245754
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.47 E-value=5.5e-13 Score=127.12 Aligned_cols=148 Identities=24% Similarity=0.399 Sum_probs=98.5
Q ss_pred cCCcEEEEEEcC---------CCeeEEEEcceeEEEEEEEEE-EecCCCCCceEEEEEEeecC-CCCCeEEE-EEcCCCC
Q 020962 75 NGGSEIQLHLDK---------YTGTGFQSKGSYLFGHFSMQM-KLVPGDSAGSVTAFYLSSQN-SEHDEIDF-EFLGNRT 142 (319)
Q Consensus 75 ~~G~~l~L~ld~---------~sga~i~Sk~~~~yG~fEari-Klp~g~saG~v~AFwl~s~~-~~~dEIDi-EflGn~~ 142 (319)
++| .|.|..|+ +++++|.||..|.+|++|+|+ |||.| .|+||||||++.+ |..+|||| |.++..+
T Consensus 47 ~~g-~l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~ 123 (293)
T cd02181 47 NSG-NVYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADIAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQT 123 (293)
T ss_pred eCC-eEEEEEeceeccCCCCCceEEEEEEeceeecceEEEEhhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCC
Confidence 344 57777764 348999999999999999997 99987 8999999999876 88899999 9998644
Q ss_pred CCceEEecc----eeeCC--CC-------------Cc--------ceeEEccCCCCCCcEEEEEEEcCceEEEEE---CC
Q 020962 143 GQPYILQTN----VFTGG--KG-------------DR--------EQRIYLWFDPTKAYHFYSVLWNMYQIVFFV---DD 192 (319)
Q Consensus 143 g~p~~vqTN----v~~~G--~g-------------~r--------eq~~~l~fDpt~dFHtYsI~Wtp~~I~fyV---DG 192 (319)
..-.+|||. +-..+ .+ +. ...+-..|+ ..+=-.|+++|+.+.|..+. +.
T Consensus 124 ~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~ 202 (293)
T cd02181 124 SNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVTSTSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGS 202 (293)
T ss_pred ceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceeecCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCC
Confidence 333456653 10000 00 00 011222333 45567999999999887554 23
Q ss_pred eEEEEEecccC------CCCCCCCC---------CCcEEEEEeecCCCcc
Q 020962 193 IPIRVFKNCKD------LGVRFPFN---------QPMKIYSSLWNADDWA 227 (319)
Q Consensus 193 ~~ir~~~~~~~------~g~~~P~~---------~Pm~l~lnlW~Gg~Wa 227 (319)
+|--....... +-..|| . ++++|++++---|+||
T Consensus 203 iP~di~~~~pdPs~WG~P~A~f~-~~~Cdi~~~F~~~~iVfn~tfCGdwA 251 (293)
T cd02181 203 IPADITSGSPDPSTWGTPAASFP-GSSCDIDSFFKDQRIVFDTTFCGDWA 251 (293)
T ss_pred CCcccccCCCCCcccCcccccCC-CCCCChhHhcccCEEEEEeecccccc
Confidence 33221111110 113355 3 8999999999999999
No 18
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=94.49 E-value=0.35 Score=43.96 Aligned_cols=96 Identities=22% Similarity=0.396 Sum_probs=56.1
Q ss_pred EEEEcCCCeeEEEEcce---eEEE-EEEEEEEecCCCCCceEEEEEEeecC--------CCCCeEEEEEcCCCCCCceEE
Q 020962 81 QLHLDKYTGTGFQSKGS---YLFG-HFSMQMKLVPGDSAGSVTAFYLSSQN--------SEHDEIDFEFLGNRTGQPYIL 148 (319)
Q Consensus 81 ~L~ld~~sga~i~Sk~~---~~yG-~fEariKlp~g~saG~v~AFwl~s~~--------~~~dEIDiEflGn~~g~p~~v 148 (319)
.+.+.-..|+++.|++. -.+| +....+|+..| |..+-.|.-+.. +..+++=.|+.|.. .+..+
T Consensus 10 ~~qi~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~~r~l~~lsvn~sG~LvA~L~g~s--s~~~~ 84 (198)
T PF09264_consen 10 SWQIAGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGSKRYLPILSVNESGSLVAELEGQS--SNTLL 84 (198)
T ss_dssp -EEEEETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESSEEEEEEEEE-TTS-EEEEETTS---S-EEE
T ss_pred eEEEeccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCceEEEEEEEEcCCCCEEEEEecCC--CcEEE
Confidence 34444477888888743 3467 78888998876 565555543321 22333323333331 11111
Q ss_pred ecceeeCCCCCcceeEEcc-CCCCCCcEEEEEEEcC--ceEEEEECCeEEEEE
Q 020962 149 QTNVFTGGKGDREQRIYLW-FDPTKAYHFYSVLWNM--YQIVFFVDDIPIRVF 198 (319)
Q Consensus 149 qTNv~~~G~g~req~~~l~-fDpt~dFHtYsI~Wtp--~~I~fyVDG~~ir~~ 198 (319)
.+. +| -.+||.|.|...| ..-.|||||+.|++.
T Consensus 85 ----------------~~~~~d-i~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 85 ----------------ATTGAD-IHGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp ----------------E-CHHH-HCSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred ----------------eccccc-ccceeEEEEEecCCCCceEEEECCEEEeec
Confidence 221 11 3579999999977 889999999999985
No 19
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=92.72 E-value=2.9 Score=33.77 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=40.2
Q ss_pred CCCcEEEEEEEcCceEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEE
Q 020962 171 TKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFH 250 (319)
Q Consensus 171 t~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~~ 250 (319)
...||..++.|...++.+||||+++.+...... ....+ ..+. . .|.+. ....+|...+++++
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~-~~~~~-~~~~----~--iG~~~----------~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN-ISLNS-NGPL----F--IGGSG----------GGSSPFNGYIDDLR 145 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS-SSTTS-CCEE----E--ESS-S----------TT--B-EEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC-cCCCC-cceE----E--EeecC----------CCCCceEEEEEEEE
Confidence 578999999999999999999998876543211 00111 2222 1 12211 23678999999999
Q ss_pred Eeee
Q 020962 251 IDGC 254 (319)
Q Consensus 251 v~~c 254 (319)
|...
T Consensus 146 i~~~ 149 (157)
T PF13385_consen 146 IYNR 149 (157)
T ss_dssp EESS
T ss_pred EECc
Confidence 9643
No 20
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=89.34 E-value=11 Score=31.26 Aligned_cols=70 Identities=7% Similarity=0.090 Sum_probs=45.0
Q ss_pred CCCCcEEEEEEEcC--ceEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEe
Q 020962 170 PTKAYHFYSVLWNM--YQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 247 (319)
Q Consensus 170 pt~dFHtYsI~Wtp--~~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~ 247 (319)
+...||...+.++. .+|.+||||+++.+.... +.+...|+.+-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 45789999999988 789999999998654321 1121333333211111 11 12358999999
Q ss_pred EEEEeeeec
Q 020962 248 GFHIDGCEA 256 (319)
Q Consensus 248 ~~~v~~c~~ 256 (319)
.++|..++-
T Consensus 122 evriy~~aL 130 (133)
T smart00560 122 EVRVYNRAL 130 (133)
T ss_pred EEEEecccc
Confidence 999987753
No 21
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=88.22 E-value=5.6 Score=34.28 Aligned_cols=109 Identities=16% Similarity=0.258 Sum_probs=57.4
Q ss_pred CCeeEEEEcceeEEEEEEEEEEecCCCCCceEEEEEEeec--C-----CCCCeEEEEEcCCCCCCceEEecceeeCCCCC
Q 020962 87 YTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQ--N-----SEHDEIDFEFLGNRTGQPYILQTNVFTGGKGD 159 (319)
Q Consensus 87 ~sga~i~Sk~~~~yG~fEariKlp~g~saG~v~AFwl~s~--~-----~~~dEIDiEflGn~~g~p~~vqTNv~~~G~g~ 159 (319)
..++-+.|+..|.=..+++.+|+.++ | -.++++... . ...-|+.|.--+.....+ .....++......
T Consensus 41 ~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~~-~~~G~~~~~~~~~ 115 (185)
T PF06439_consen 41 SGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGLP-NSTGSLYDEPPWQ 115 (185)
T ss_dssp SSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTTT-TSTTSBTTTB-TC
T ss_pred CCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCCC-CccceEEEecccc
Confidence 34677888887777789999998543 2 445555543 1 234455553221110000 0000011000000
Q ss_pred cceeEEccCCCCCCcEEEEEEEcCceEEEEECCeEEEEEecc
Q 020962 160 REQRIYLWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKNC 201 (319)
Q Consensus 160 req~~~l~fDpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~ 201 (319)
...... ..-+..+||++.|.-..++|+.+|||++|-++...
T Consensus 116 ~~~~~~-~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 116 LEPSVN-VAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp B-SSS---S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred cccccc-ccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 000001 11246799999999999999999999999998864
No 22
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=87.04 E-value=7.8 Score=35.05 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=43.1
Q ss_pred CCCcEEEEEEEcC--ceEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeE
Q 020962 171 TKAYHFYSVLWNM--YQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKG 248 (319)
Q Consensus 171 t~dFHtYsI~Wtp--~~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~ 248 (319)
...||...+.|+. .++.+||||+++.. ..-..+..++ .+-.|+++- .-+.+ || ..+ ....|.-.+++
T Consensus 89 ~g~W~hvc~tw~~~~g~~~lyvnG~~~~~--~~~~~g~~i~--~~G~lvlGq-~qd~~---gg--~f~-~~~~f~G~i~~ 157 (206)
T smart00159 89 DGKWHHICTTWESSSGIAELWVDGKPGVR--KGLAKGYTVK--PGGSIILGQ-EQDSY---GG--GFD-ATQSFVGEIGD 157 (206)
T ss_pred CCceEEEEEEEECCCCcEEEEECCEEccc--ccccCCcEEC--CCCEEEEEe-cccCC---CC--CCC-CCcceeEEEee
Confidence 5689999999974 46999999998621 1111222333 233344443 22222 34 233 24468889999
Q ss_pred EEEeee
Q 020962 249 FHIDGC 254 (319)
Q Consensus 249 ~~v~~c 254 (319)
|+|..-
T Consensus 158 v~iw~~ 163 (206)
T smart00159 158 LNMWDS 163 (206)
T ss_pred eEEecc
Confidence 988543
No 23
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=85.89 E-value=12 Score=33.16 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=50.2
Q ss_pred EEEEEEEecCCCCCceEEEEEEeecCCCCCeEEEEEcCCCCCCceEEecceeeCCCCCcceeEEcc-CC-CCCCcEEEEE
Q 020962 102 HFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLW-FD-PTKAYHFYSV 179 (319)
Q Consensus 102 ~fEariKlp~g~saG~v~AFwl~s~~~~~dEIDiEflGn~~g~p~~vqTNv~~~G~g~req~~~l~-fD-pt~dFHtYsI 179 (319)
.+.+.+|..+. +.|+.-++.-. +..-++-++.-|.. + .+. ++..+..+..+..... .+ ....||.-++
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~---~~~~~l~v~l~g~~---~-~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA---QNVRQFGLEVDGRA---N-TLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC---CCcEEEEEEEeCCc---c-EEE--EEECCCCCcEEEEeecCCccccCCceEEEE
Confidence 46677777643 35555444432 23445555655532 1 233 2222222233322111 11 2567999999
Q ss_pred EEcCceEEEEECCeEEEEEe
Q 020962 180 LWNMYQIVFFVDDIPIRVFK 199 (319)
Q Consensus 180 ~Wtp~~I~fyVDG~~ir~~~ 199 (319)
.+..+++++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999997764
No 24
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=82.19 E-value=15 Score=33.00 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=42.8
Q ss_pred CCCCcEEEEEEEc--CceEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEe
Q 020962 170 PTKAYHFYSVLWN--MYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYK 247 (319)
Q Consensus 170 pt~dFHtYsI~Wt--p~~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~ 247 (319)
....||...+.|+ ..++.+||||+++..-. -..+..+| ....|.+.- +-..-||. .+. ...|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~--~~g~l~lG~----~q~~~gg~--~~~-~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVG--PGGSIILGQ----EQDSYGGG--FDA-TQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEEC--CCCeEEEee----cccCCCCC--CCC-CcceEEEEc
Confidence 4678999999998 44699999999875432 11122333 122333332 11111342 332 347888899
Q ss_pred EEEEee
Q 020962 248 GFHIDG 253 (319)
Q Consensus 248 ~~~v~~ 253 (319)
+|+|..
T Consensus 157 ~v~iw~ 162 (201)
T cd00152 157 DVNMWD 162 (201)
T ss_pred eeEEEc
Confidence 998854
No 25
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=79.61 E-value=7.2 Score=36.72 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=58.9
Q ss_pred cCCcEEEEEEcCCCe---eEEE-Ec--ceeEEE----EEEEEEEecCCC-----CCceEEEEEEeecC------------
Q 020962 75 NGGSEIQLHLDKYTG---TGFQ-SK--GSYLFG----HFSMQMKLVPGD-----SAGSVTAFYLSSQN------------ 127 (319)
Q Consensus 75 ~~G~~l~L~ld~~sg---a~i~-Sk--~~~~yG----~fEariKlp~g~-----saG~v~AFwl~s~~------------ 127 (319)
..++++.|.-++..+ .++. .. .+..+| -|-.+.++|... ...=.||+||++..
T Consensus 65 ~s~~E~~I~S~~~C~~~~CG~yR~g~~AyhGf~G~~K~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~C 144 (235)
T PF10287_consen 65 PSNKEFVIMSDKKCDGSDCGYYRPGIPAYHGFGGTTKMFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGC 144 (235)
T ss_pred CCCCEEEEEeCCCCCCCCcccCcCCchhhccCCCCceEEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCC
Confidence 345566666665432 2332 22 223332 377777788631 24568999999752
Q ss_pred ----CCCCeEEE-EEcCCCCCCceEEecceee-CCC------CCcceeEEccCCCCCCcEEEEEEEcCc
Q 020962 128 ----SEHDEIDF-EFLGNRTGQPYILQTNVFT-GGK------GDREQRIYLWFDPTKAYHFYSVLWNMY 184 (319)
Q Consensus 128 ----~~~dEIDi-EflGn~~g~p~~vqTNv~~-~G~------g~req~~~l~fDpt~dFHtYsI~Wtp~ 184 (319)
..++|+|| |.|... +.+ +-+.+|. +|. ++....+. -|++..-++++.++.+
T Consensus 145 SCW~sGCGEfDifEVl~~g--~~k-~~St~H~~qG~~~~~~g~G~~~yf~---RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 145 SCWKSGCGEFDIFEVLNSG--DDK-LKSTFHDYQGTDDINGGGGSSDYFK---RPTSGTMKVAVIFDSS 207 (235)
T ss_pred CccCCCcccceeeeeccCC--Cce-eEEEEecccCccccCCCCCCCCccc---CCCCCCeEEEEEEcCC
Confidence 35899999 999764 333 3333443 442 11211121 2677888899888654
No 26
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=70.55 E-value=55 Score=29.35 Aligned_cols=76 Identities=11% Similarity=0.204 Sum_probs=45.0
Q ss_pred EEccCCCCCCcEEEEE--EEcC---ceEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCC
Q 020962 164 IYLWFDPTKAYHFYSV--LWNM---YQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWS 238 (319)
Q Consensus 164 ~~l~fDpt~dFHtYsI--~Wtp---~~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s 238 (319)
..+...+...||.+.| .|.+ ..|..++||+++...+... -++..+..++-+.|.-.+ |.+..+ ..+-.
T Consensus 144 ~~~~~~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~--~~~~~ 216 (224)
T PF14099_consen 144 VDLGPVERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPN--ESDTQ 216 (224)
T ss_dssp EECCCS-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC----SS-
T ss_pred ecCCCcCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCc--ccccE
Confidence 3343334578999976 6875 5699999999999987632 233236677777776543 221111 11111
Q ss_pred CCCEEEEEeEEEE
Q 020962 239 KAPFIASYKGFHI 251 (319)
Q Consensus 239 ~aPf~a~~~~~~v 251 (319)
.+|++|++
T Consensus 217 -----vy~D~v~~ 224 (224)
T PF14099_consen 217 -----VYYDNVRI 224 (224)
T ss_dssp -----EEEEEEE-
T ss_pred -----EEeccccC
Confidence 88998875
No 27
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=67.63 E-value=17 Score=33.85 Aligned_cols=58 Identities=17% Similarity=0.406 Sum_probs=38.5
Q ss_pred CcEEEEEEEcCceEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCC-CCEEEEEeEEEE
Q 020962 173 AYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSK-APFIASYKGFHI 251 (319)
Q Consensus 173 dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~-aPf~a~~~~~~v 251 (319)
.++.-.|.=....|.|.|||.+|........ ...|- -.+| +|-..+ +|.+|.|++++|
T Consensus 160 ~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv-----------------l~~G--~IGfRqMapl~A~Yrnl~V 218 (218)
T PF09224_consen 160 GPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV-----------------LRGG--RIGFRQMAPLVARYRNLEV 218 (218)
T ss_dssp S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SB--EEEEEEETT-EEEEEEEEE
T ss_pred CCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc-----------------ccCc--EeeeeccchhhhhhccccC
Confidence 6666688889999999999999999975432 11230 0145 344444 799999999986
No 28
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=67.58 E-value=66 Score=26.17 Aligned_cols=85 Identities=19% Similarity=0.116 Sum_probs=47.4
Q ss_pred EEEEEEEEEEecCCCCCceEEEEEEeecCCCCCeEEEEEcCCCCCCceEEecceeeCCCCCcceeEEccC-CCCCCcEEE
Q 020962 99 LFGHFSMQMKLVPGDSAGSVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWF-DPTKAYHFY 177 (319)
Q Consensus 99 ~yG~fEariKlp~g~saG~v~AFwl~s~~~~~dEIDiEflGn~~g~p~~vqTNv~~~G~g~req~~~l~f-Dpt~dFHtY 177 (319)
....+++++|.... .|+. |++.+. ...+.+-+|... |. ++..+-. | .....+...- =....||.-
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~---g~---l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELED---GR---LVLRYDL-G--SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEEC---CE---EEEEEcC-C--cccEEEEccCccCCCCEEEE
Confidence 34467777776643 4654 333332 235666666653 21 2221111 2 1222222211 124579999
Q ss_pred EEEEcCceEEEEECCeEEEE
Q 020962 178 SVLWNMYQIVFFVDDIPIRV 197 (319)
Q Consensus 178 sI~Wtp~~I~fyVDG~~ir~ 197 (319)
.|.+....+..+|||.+..+
T Consensus 86 ~i~~~~~~~~l~VD~~~~~~ 105 (151)
T cd00110 86 SVERNGRSVTLSVDGERVVE 105 (151)
T ss_pred EEEECCCEEEEEECCccEEe
Confidence 99999999999999985433
No 29
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=47.31 E-value=1.3e+02 Score=23.33 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=47.1
Q ss_pred CCCcEEEEEEEcCceEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEE
Q 020962 171 TKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFH 250 (319)
Q Consensus 171 t~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~~ 250 (319)
...||.-.|.=....++..||+............ ..-+.....++.||.-.......... ...|.--+++++
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~~------~~~~~~~~~l~iGg~~~~~~~~~~~~--~~~f~Gci~~l~ 124 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSSS------SDSLDPDGSLYIGGLPESNQPSGSVD--TPGFVGCIRDLR 124 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSSTT------HHCBESEEEEEESSTTTTCTCTTSST--TSB-EEEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEeccccc------eecccCCCCEEEecccCccccccccC--CCCcEEEcCeEE
Confidence 5679999999999999999999998887643210 00222344577777544221110111 566888888887
Q ss_pred Eee
Q 020962 251 IDG 253 (319)
Q Consensus 251 v~~ 253 (319)
|++
T Consensus 125 vng 127 (128)
T PF02210_consen 125 VNG 127 (128)
T ss_dssp ETT
T ss_pred ECC
Confidence 753
No 30
>smart00282 LamG Laminin G domain.
Probab=41.46 E-value=1.1e+02 Score=24.81 Aligned_cols=28 Identities=18% Similarity=0.011 Sum_probs=23.6
Q ss_pred CCCcEEEEEEEcCceEEEEECCeEEEEE
Q 020962 171 TKAYHFYSVLWNMYQIVFFVDDIPIRVF 198 (319)
Q Consensus 171 t~dFHtYsI~Wtp~~I~fyVDG~~ir~~ 198 (319)
...||.-.|.-+...+..+|||......
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~ 88 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSG 88 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccE
Confidence 4579999999999999999999765443
No 31
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=40.93 E-value=2.7e+02 Score=25.01 Aligned_cols=71 Identities=20% Similarity=0.354 Sum_probs=38.2
Q ss_pred CCCcEEEEEEEcC--ceEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeE
Q 020962 171 TKAYHFYSVLWNM--YQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKG 248 (319)
Q Consensus 171 t~dFHtYsI~Wtp--~~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~ 248 (319)
...||.+-+-|+. ..+.+||||+....-. -..|...| ... .++|.- .-| .-||. .| ....|.-++.+
T Consensus 83 ~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~-~gG-~~vlGQ--eQd--~~gG~--fd-~~q~F~G~i~~ 151 (195)
T PF00354_consen 83 DGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIP-GGG-TLVLGQ--EQD--SYGGG--FD-ESQAFVGEISD 151 (195)
T ss_dssp TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B--SSE-EEEESS---BS--BTTBT--CS-GGGB--EEEEE
T ss_pred CCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceEC-CCC-EEEECc--ccc--ccCCC--cC-CccEeeEEEec
Confidence 5789999999965 6799999999543322 12344444 222 233322 111 22452 33 34589999999
Q ss_pred EEEe
Q 020962 249 FHID 252 (319)
Q Consensus 249 ~~v~ 252 (319)
|++-
T Consensus 152 ~~iW 155 (195)
T PF00354_consen 152 FNIW 155 (195)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8874
No 32
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=35.24 E-value=2.8e+02 Score=23.99 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=39.6
Q ss_pred CCCeEEecCCcEEEEEEcCCCeeEEEEcceeEEEEEEEEEEecCCCCCceEEEEEEeecC--------CCCCeEEE--EE
Q 020962 68 FDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAFYLSSQN--------SEHDEIDF--EF 137 (319)
Q Consensus 68 ~~~v~~~~~G~~l~L~ld~~sga~i~Sk~~~~yG~fEariKlp~g~saG~v~AFwl~s~~--------~~~dEIDi--Ef 137 (319)
.+++.+...|..+.|..|..+|++ +++|-+++ ++|. +-+-..+-+ ...|.|.| |+
T Consensus 34 qs~~qv~g~G~V~~vLpdd~~Gsr--------HQ~Fiv~l--~~g~-----tllIahNIDlaprip~l~~GD~V~f~GeY 98 (131)
T PF11948_consen 34 QSDVQVSGCGTVVKVLPDDNKGSR--------HQRFIVRL--SSGQ-----TLLIAHNIDLAPRIPWLQKGDQVEFYGEY 98 (131)
T ss_pred ccCeeEeccEEEEEECcccCCCCc--------ceEEEEEe--CCCC-----EEEEEeccCccccCcCcCCCCEEEEEEEE
Confidence 456777777887888778778876 44555444 4442 222222221 35677877 77
Q ss_pred cCCCCCCceEEecce
Q 020962 138 LGNRTGQPYILQTNV 152 (319)
Q Consensus 138 lGn~~g~p~~vqTNv 152 (319)
.-|..|. .+|-.+
T Consensus 99 e~n~kgg--vIHWTH 111 (131)
T PF11948_consen 99 EWNPKGG--VIHWTH 111 (131)
T ss_pred EECCCCC--EEEeec
Confidence 7666553 455433
No 33
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=30.50 E-value=1.6e+02 Score=24.27 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=32.9
Q ss_pred eeCCCCCcceeEE-ccCCCCCCcEEEEEEEcCceEEEEECCeEEEEEec
Q 020962 153 FTGGKGDREQRIY-LWFDPTKAYHFYSVLWNMYQIVFFVDDIPIRVFKN 200 (319)
Q Consensus 153 ~~~G~g~req~~~-l~fDpt~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~ 200 (319)
+.+|.-++|++.. .+|-+.+. ..-.|.=+++....+|||+++..+..
T Consensus 58 ~~~g~Wg~Eer~~~~pf~~g~~-F~l~i~~~~~~f~i~vng~~~~~F~~ 105 (127)
T cd00070 58 FLNGNWGPEERSGGFPFQPGQP-FELTILVEEDKFQIFVNGQHFFSFPH 105 (127)
T ss_pred CCCCEecHhhccCCCCCCCCCe-EEEEEEEcCCEEEEEECCEeEEEecC
Confidence 3334335566553 45554444 48888889999999999999988864
No 34
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=30.40 E-value=58 Score=35.32 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=37.6
Q ss_pred CCCcEEEEEEEcCceEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEeecCCCcc
Q 020962 171 TKAYHFYSVLWNMYQIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLWNADDWA 227 (319)
Q Consensus 171 t~dFHtYsI~Wtp~~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW~Gg~Wa 227 (319)
.++||.|.+.-+=-.++.||||+-..-..-. .+|| -.|.++-.-|=+|.=|-
T Consensus 441 D~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~----ddwp-lHpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 441 DNEWHHYVLNVEFPDVTLYVDGKSFEPPLIT----DDWP-LHPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhheeEEeecCceEEEEEcCcccCCceec----cCCc-cCcccccceeEEeeecc
Confidence 4789999999976669999999865433222 3678 56766666666677777
No 35
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.76 E-value=64 Score=26.13 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhccCC
Q 020962 28 ASKIWILLLGILFMVSATMGVP 49 (319)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~ 49 (319)
+.+++.|+|.++||+++.++++
T Consensus 5 ~~llL~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 5 AFLLLGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH
No 36
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=23.06 E-value=5.8e+02 Score=23.26 Aligned_cols=103 Identities=14% Similarity=0.200 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCCCceEEecceeeCCCCCcceeEEccCCCCCCcEEEEEEEc--CceEEEEECCeEEEEEecccCCCCCCC
Q 020962 132 EIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHFYSVLWN--MYQIVFFVDDIPIRVFKNCKDLGVRFP 209 (319)
Q Consensus 132 EIDiEflGn~~g~p~~vqTNv~~~G~g~req~~~l~fDpt~dFHtYsI~Wt--p~~I~fyVDG~~ir~~~~~~~~g~~~P 209 (319)
++=+|+-+...++.|...+..-..+. . + ....||+=++.=+ ..+..+||||+.+.++.... ..|-
T Consensus 73 ~~G~E~R~~~~~~~y~~~~~~~v~~~-------~-~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fi 139 (190)
T PF02973_consen 73 KLGFELRDTKGNQNYNFSRPAKVRGG-------Y-K--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFI 139 (190)
T ss_dssp EEEEEEEETTTTCEEEEEESSE--SE-------E-T--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-G
T ss_pred EEEEEEecCCCCcccccccccEeccc-------c-c--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHh
Confidence 77778877664444443332111000 0 1 1345788877775 67899999998888775432 2232
Q ss_pred CCCCcEEEEEeecCCCccCCCCCcccCCCCCCEEEEEeEEEEeeeec
Q 020962 210 FNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEA 256 (319)
Q Consensus 210 ~~~Pm~l~lnlW~Gg~Wat~GG~~~id~s~aPf~a~~~~~~v~~c~~ 256 (319)
.+-|--=.+.| ||..+..-...||.-.+++++|+.++-
T Consensus 140 s~i~~~n~~~i---------G~t~R~g~~~y~f~G~I~~l~iYn~aL 177 (190)
T PF02973_consen 140 SDIPGLNSVQI---------GGTNRAGSNAYPFNGTIDNLKIYNRAL 177 (190)
T ss_dssp GGSTT--EEEE---------SSEEETTEEES--EEEEEEEEEESS--
T ss_pred hcCcCCceEEE---------cceEeCCCceecccceEEEEEEEcCcC
Confidence 11111111111 221111224679999999999987653
No 37
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.51 E-value=1.4e+02 Score=31.22 Aligned_cols=48 Identities=29% Similarity=0.419 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCCceEEecceeeCCCCCcceeEEccCCCCCCcEEEEEEEcCceEEEE
Q 020962 130 HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHFYSVLWNMYQIVFF 189 (319)
Q Consensus 130 ~dEIDiEflGn~~g~p~~vqTNv~~~G~g~req~~~l~fDpt~dFHtYsI~Wtp~~I~fy 189 (319)
|-.++|++-|+ .++..|+-.++.. .|.-|. .-=|+|++.|.+..+.|-
T Consensus 161 hk~f~i~yn~d-----rii~vnlt~~~~v------~L~~~~-~~~~tYsV~W~~t~v~f~ 208 (593)
T KOG1277|consen 161 HKKFEIGYNGD-----RIIDVNLTTHGLV------DLRPDK-KLTFTYSVKWKETEVEFE 208 (593)
T ss_pred eeeEEEeecCc-----eEEEEEeeecccc------cCCCCC-CCceEEEEEeeeccCcHH
Confidence 44455555553 2566666654322 232221 334899999999888763
No 38
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=21.12 E-value=1.1e+02 Score=24.57 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=14.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHh
Q 020962 21 FVFYREMASKIWILLLGILFMVSAT 45 (319)
Q Consensus 21 ~~~~~~m~~~~~~~~~~~~~~~~~~ 45 (319)
-.||++++.+..++++ ++++++-+
T Consensus 40 I~FWv~LA~FV~~lF~-iL~~ms~s 63 (90)
T PF15183_consen 40 IAFWVSLAAFVVFLFL-ILLYMSWS 63 (90)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHhcc
Confidence 4689888877754433 34444443
No 39
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=20.89 E-value=2.2e+02 Score=21.54 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=33.0
Q ss_pred cccCCCeEEecCCcEEEEEEcCCCeeEEEEcceeEEEEEEEEEEecCCCCCceEEEE
Q 020962 65 TWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGSVTAF 121 (319)
Q Consensus 65 ~w~~~~v~~~~~G~~l~L~ld~~sga~i~Sk~~~~yG~fEariKlp~g~saG~v~AF 121 (319)
.+.++.+++.-+++.|.++-.+..... ...+.+|.|+=++.||..-....+.|-
T Consensus 17 G~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~vd~~~i~A~ 70 (83)
T cd06526 17 GFKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEGVDPDSVTSS 70 (83)
T ss_pred CCCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCCCChHHeEEE
Confidence 345566666556667777765432211 345678999999999965333334443
No 40
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=20.42 E-value=1.2e+02 Score=23.38 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=22.3
Q ss_pred eEEEEECCeEEEEEecccCCCCCCCCCCCcEEEEEee
Q 020962 185 QIVFFVDDIPIRVFKNCKDLGVRFPFNQPMKIYSSLW 221 (319)
Q Consensus 185 ~I~fyVDG~~ir~~~~~~~~g~~~P~~~Pm~l~lnlW 221 (319)
.+.|||||+++.+..... ...|+...|-.-.+.+=
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~vv 78 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTVV 78 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEEE
Confidence 788999999996654432 13344246666666663
Done!