BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020963
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OLH|A Chain A, Human 3-Mercaptopyruvate Sulfurtransferase
Length = 302
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 162/293 (55%), Gaps = 27/293 (9%)
Query: 21 EPVVSVDWLHANLREPD----LKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVAD 76
+ +VS W+ LR P L++LDASWY+P R+ +E++ HIPGA FFD+D +D
Sbjct: 21 QSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSD 80
Query: 77 RTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG--KGIFSAARVWWMFRVFGHDRVWV 134
RT+ HMLP E FA LG+ +V+YD +G++SA RVWWMFR FGH V +
Sbjct: 81 RTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSL 140
Query: 135 LDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTL 194
LDGGL W + S S A P F+ + P I T
Sbjct: 141 LDGGLRHWLRQNLPLSSGKSQPA---------------------PAEFRAQLDPAFIKTY 179
Query: 195 EQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPA 254
E +K N+E +Q+VD+R+ RF G PEPR GI GH+PG+ IPF L
Sbjct: 180 EDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSP 239
Query: 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 307
+E++ F+++ + L KP+V CG+GVTAC +ALG GK DV +YDGSW EW
Sbjct: 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEW 292
>pdb|1URH|A Chain A, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
pdb|1URH|B Chain B, The "rhodanese" Fold And Catalytic Mechanism Of
3-Mercaptopyruvate Sulfotransferases: Crystal Structure
Of Ssea From Escherichia Coli
Length = 280
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/294 (38%), Positives = 165/294 (56%), Gaps = 23/294 (7%)
Query: 24 VSVDWLHANLREPDLKVLDASWYMP-DEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 82
V DWL ++ +P+++++DA P E RN QEY HIPGA+FFD++ ++D T+ LP
Sbjct: 6 VGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLP 65
Query: 83 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 142
HMLP E FA A+ LG+ L+VYD +FSA R WWM R FG ++V +L GGL W
Sbjct: 66 HMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGW 125
Query: 143 RASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIE 202
+ D +L A E E F F P + + V
Sbjct: 126 QR-----------DDLLLEEGAVELPEG----------EFNAAFNPEAVVKVTDVLLASH 164
Query: 203 EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFE 262
E T Q++DAR ARF+ + EPR G+R GH+PG+ +P+ +++ + L DEL F
Sbjct: 165 ENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGE-LKTTDELDAIFF 223
Query: 263 QEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 316
G+S +KP++ + G+GVTA ++ L L L +V +YDG+W+EWGA+ D PVE
Sbjct: 224 GRGVSYDKPIIVSXGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVE 277
>pdb|1ORB|A Chain A, Active Site Structural Features For Chemically Modified
Forms Of Rhodanese
Length = 296
Score = 207 bits (528), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 159/300 (53%), Gaps = 31/300 (10%)
Query: 23 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 78
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 79 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 136
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 137 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 196
GG W G+ V S S P F+ L+ T EQ
Sbjct: 128 GGFRNWLKEGHPVTSEPSRPE---------------------PAIFKATLNRSLLKTYEQ 166
Query: 197 VKRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPAD 255
V N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +
Sbjct: 167 VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 226
Query: 256 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW--GAQPDT 313
EL+ FE + + L KP++ C GVTAC +AL GK DVA+YDGSW EW A P+T
Sbjct: 227 ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPET 286
>pdb|1BOH|A Chain A, Sulfur-Substituted Rhodanese (Orthorhombic Form)
pdb|1BOI|A Chain A, N-Terminally Truncated Rhodanese
pdb|2ORA|A Chain A, Rhodanese (Thiosulfate: Cyanide Sulfurtransferase)
Length = 296
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 158/300 (52%), Gaps = 31/300 (10%)
Query: 23 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 78
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 79 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 136
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 137 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 196
GG W G+ V S S P F+ L+ T EQ
Sbjct: 128 GGFRNWLKEGHPVTSEPSRPE---------------------PAIFKATLNRSLLKTYEQ 166
Query: 197 VKRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPAD 255
V N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +
Sbjct: 167 VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 226
Query: 256 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW--GAQPDT 313
EL+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW A P+T
Sbjct: 227 ELRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPET 286
>pdb|1RHS|A Chain A, Sulfur-Substituted Rhodanese
Length = 296
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 158/300 (52%), Gaps = 31/300 (10%)
Query: 23 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 78
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 79 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 136
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 137 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 196
GG W G+ V S S P F+ L+ T EQ
Sbjct: 128 GGFRNWLKEGHPVTSEPSRPE---------------------PAIFKATLNRSLLKTYEQ 166
Query: 197 VKRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPAD 255
V N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +
Sbjct: 167 VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 226
Query: 256 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW--GAQPDT 313
EL+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW A P+T
Sbjct: 227 ELRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPET 286
>pdb|1DP2|A Chain A, Crystal Structure Of The Complex Between Rhodanese And
Lipoate
Length = 293
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 158/300 (52%), Gaps = 31/300 (10%)
Query: 23 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 78
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 79 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 136
+ MLPSE FA V +LG+ N +VVYDG G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 137 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 196
GG W G+ V S S P F+ L+ T EQ
Sbjct: 128 GGFRNWLKEGHPVTSEPSRPE---------------------PAIFKATLNRSLLKTYEQ 166
Query: 197 VKRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPAD 255
V N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L +
Sbjct: 167 VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPE 226
Query: 256 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW--GAQPDT 313
EL+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW A P+T
Sbjct: 227 ELRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPET 286
>pdb|1RHD|A Chain A, Structure Of Bovine Liver Rhodanese. I. Structure
Determination At 2.5 Angstroms Resolution And A
Comparison Of The Conformation And Sequence Of Its Two
Domains
Length = 293
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 159/300 (53%), Gaps = 31/300 (10%)
Query: 23 VVSVDWLHANLRE----PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT 78
+VS WL ++R P L+VLDASWY P R +EY H+PGA FFD++ D+
Sbjct: 9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPG-TREARKEYLERHVPGASFFDIEECRDKA 67
Query: 79 TNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLD 136
+ MLPSE FA V +LG+ N +VVY+G G F A RVWWMFRVFGH V VL+
Sbjct: 68 SPYEVMLPSEAGFADYVGSLGISNDTHVVVYNGDDLGSFYAPRVWWMFRVFGHRTVSVLN 127
Query: 137 GGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQ 196
GG W G+ V S S P F+ L+ T EQ
Sbjct: 128 GGFRNWLKEGHPVTSEPSRPE---------------------PAIFKATLNRSLLKTYEQ 166
Query: 197 VKRNIEEGTYQLVDARSKARFDGDAPEPRK-GIRSGHVPGSKCIPFPQMLDASQTLLPAD 255
V N+E +QLVD+R++ R+ G PEP G+ SGH+ GS +PF L + +
Sbjct: 167 VLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMDFLTENGFEKSPE 226
Query: 256 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW--GAQPDT 313
EL+ FE + + L KP++ GVTAC +AL GK DVA+YDGSW EW A P+T
Sbjct: 227 ELRAMFEAKKVDLTKPLIATXRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPET 286
>pdb|3UTN|X Chain X, Crystal Structure Of Tum1 Protein From Saccharomyces
Cerevisiae
Length = 327
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 148/276 (53%), Gaps = 21/276 (7%)
Query: 41 LDASWYMPD-EQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 99
+DA+WY+P + N IP ++FFD+D ++D+ + PHM P+++ F A+S LG
Sbjct: 50 VDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAMSNLG 109
Query: 100 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAIL 159
++ D LVVYD G FS+ R W V GH +V++L+ ++R Y ++SS
Sbjct: 110 VQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLN-NFNQYREFKYPLDSSKVAAFSP 168
Query: 160 KASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDG 219
+ E+ E ++V ++ FQ L+ + E K+ + DARS RF+G
Sbjct: 169 YPKSHYESSESFQDKEIVD---YEEMFQ--LVKSGELAKK------FNAFDARSLGRFEG 217
Query: 220 DAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLP-ADE-----LKKRFEQEGISLE--KP 271
PEPR I SGH+PG++ +P+ +LD P A E L+K + +L+ KP
Sbjct: 218 TEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKALKDFHCTLDPSKP 277
Query: 272 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 307
+ +CGTGV+ I+ L G +V +YDGSWTEW
Sbjct: 278 TICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEW 313
>pdb|1UAR|A Chain A, Crystal Structure Of Rhodanese From Thermus Thermophilus
Hb8
Length = 285
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/301 (28%), Positives = 135/301 (44%), Gaps = 33/301 (10%)
Query: 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN 80
E +VS DW+ +L +P ++VL+ DE Y HIPGA +D D
Sbjct: 7 EVLVSTDWVQEHLEDPKVRVLEV-----DED---ILLYDTGHIPGAQ--KIDWQRDFWDP 56
Query: 81 LPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 140
+ SEE FA LG+ N +V+Y K + AA +W F+ GH V + +GG
Sbjct: 57 VVRDFISEEEFAKLXERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLXNGGRQ 116
Query: 141 RWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRN 200
+W G + + S E Y+ + + ++ H+I
Sbjct: 117 KWVEEGRPLTTEV-------PSYPPGRYEVPYRDESI--RAYRDDVLEHII--------K 159
Query: 201 IEEGTYQLVDARSKARFDGDAPE----PRKG-IRSGHVPGSKCIPFPQMLDASQTLLPAD 255
++EG LVD RS + G+ P++G +R+GH+PG+K IP+ + ++ T A+
Sbjct: 160 VKEGKGALVDVRSPQEYRGELTHXPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAE 219
Query: 256 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTP 314
EL+ +E GI+ +K +V + L LG V YDGSWTEWG P
Sbjct: 220 ELRALYEPLGITKDKDIVVYXRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVP 279
Query: 315 V 315
+
Sbjct: 280 I 280
>pdb|3HWI|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
pdb|3HWI|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa2 (Rhodanese-Like Protein) From
Mycobacterium Tuberculosis
Length = 298
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 134/310 (43%), Gaps = 38/310 (12%)
Query: 16 SVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVA 75
S++ + +VS DW +NL P + ++ DE + Y HI GA+ +D
Sbjct: 21 SMARCDVLVSADWAESNLHAPKVVFVEV-----DEDTSA---YDRDHIAGAI--KLDWRT 70
Query: 76 DRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVL 135
D + + F+ +S G+ N+D +++Y G + AA +W F+++GH++V +L
Sbjct: 71 DLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLL 130
Query: 136 DGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLE 195
DGG +W G + S + +A+ P F+ ++ +
Sbjct: 131 DGGRKKWELDGRPLSSDPVSRPVTSYTASP-------------PDNTIRAFRDEVLAAI- 176
Query: 196 QVKRNIEEGTYQLVDARSKARFDGDAPEP-----RKGIRSGHVPGSKCIPFPQMLDASQT 250
N++ L+D RS F G P + R GH+PG+ +P+ + + T
Sbjct: 177 ----NVK----NLIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGT 228
Query: 251 LLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGA 309
+EL K + G+ K + C G + L LG +V YDGSWTE+G+
Sbjct: 229 FKSDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGS 288
Query: 310 QPDTPVETSS 319
P+E S
Sbjct: 289 LVGAPIELGS 298
>pdb|3AAX|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
pdb|3AAX|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Monoclinic Form
Length = 277
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 40/304 (13%)
Query: 23 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 82
+VS DW +NL P + ++ DE + Y HI GA+ +D D +
Sbjct: 7 LVSADWAESNLHAPKVVFVEV-----DEDTSA---YDRDHIAGAI--KLDWRTDLQDPVK 56
Query: 83 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 142
+ F+ +S G+ N+D +++Y G + AA +W F+++GH++V +LDGG +W
Sbjct: 57 RDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKW 116
Query: 143 RASGYDVESSASGDAILKASAA-SEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNI 201
G + S + +A+ + + ++ +V+ +
Sbjct: 117 ELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKN----------------- 159
Query: 202 EEGTYQLVDARSKARFDGDAPEP-----RKGIRSGHVPGSKCIPFPQMLDASQTLLPADE 256
L+D RS F G P + R GH+PG+ +P+ + + T +E
Sbjct: 160 ------LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEE 213
Query: 257 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTPV 315
L K + G+ K + C G + L LG +V YDGSWTE+G+ P+
Sbjct: 214 LAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPI 273
Query: 316 ETSS 319
E S
Sbjct: 274 ELGS 277
>pdb|3AAY|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
pdb|3AAY|B Chain B, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Cysa3 (Rv3117) From Mycobacterium
Tuberculosis: Orthorhombic Form
Length = 277
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 128/304 (42%), Gaps = 40/304 (13%)
Query: 23 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLP 82
+VS DW +NL P + ++ DE + Y HI GA+ +D D +
Sbjct: 7 LVSADWAESNLHAPKVVFVEV-----DEDTSA---YDRDHIAGAI--KLDWRTDLQDPVK 56
Query: 83 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 142
+ F+ +S G+ N+D +++Y G + AA +W F+++GH++V +LDGG +W
Sbjct: 57 RDFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKW 116
Query: 143 RASGYDVESSASGDAILKASAA-SEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNI 201
G + S + +A+ + + ++ +V+ +
Sbjct: 117 ELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKN----------------- 159
Query: 202 EEGTYQLVDARSKARFDGDAPEP-----RKGIRSGHVPGSKCIPFPQMLDASQTLLPADE 256
L+D RS F G P + R GH+PG+ +P+ + + T +E
Sbjct: 160 ------LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEE 213
Query: 257 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWGAQPDTPV 315
L K + G+ K + G + L LG +V YDGSWTE+G+ P+
Sbjct: 214 LAKLYADAGLDNSKETIAYXRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPI 273
Query: 316 ETSS 319
E S
Sbjct: 274 ELGS 277
>pdb|1H4K|X Chain X, Sulfurtransferase From Azotobacter Vinelandii In Complex
With Hypophosphite
pdb|1H4M|X Chain X, Sulfurtransferase From Azotobacter Vinelandii In Complex
With Phosphate
Length = 271
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 114/288 (39%), Gaps = 33/288 (11%)
Query: 29 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSE 88
L A L P+L ++D + Y HIPGA F D P + P
Sbjct: 16 LQARLSAPELILVDLT---------SAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPR 66
Query: 89 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 148
E + LG + VVYD +G A R W+ V G R L+GGL W A
Sbjct: 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRP 126
Query: 149 VESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQL 208
+ L A A GP +P + + + + +
Sbjct: 127 LSRE------LPAPAG-------------GPVALSLHDEP--TASRDYLLGRLGAADLAI 165
Query: 209 VDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 268
DARS + G+ KG GH+PG+ + +D S+ L ++ R E+ GI+
Sbjct: 166 WDARSPQEYRGEKVLAAKG---GHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITP 222
Query: 269 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 316
+K +VT C T + + L LG V Y GSW EWG PDTPVE
Sbjct: 223 DKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE 270
>pdb|1E0C|A Chain A, Sulfurtransferase From Azotobacter Vinelandii
Length = 271
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 113/288 (39%), Gaps = 33/288 (11%)
Query: 29 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSE 88
L A L P+L ++D + Y HIPGA F D P + P
Sbjct: 16 LQARLSAPELILVDLT---------SAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPR 66
Query: 89 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 148
E + LG + VVYD +G A R W+ V G R L+GGL W A
Sbjct: 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRP 126
Query: 149 VESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQL 208
+ L A A GP +P + + + + +
Sbjct: 127 LSRE------LPAPAG-------------GPVALSLHDEP--TASRDYLLGRLGAADLAI 165
Query: 209 VDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 268
DARS + G+ KG GH+PG+ + +D S+ L ++ R E+ GI+
Sbjct: 166 WDARSPQEYRGEKVLAAKG---GHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITP 222
Query: 269 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 316
+K +VT T + + L LG V Y GSW EWG PDTPVE
Sbjct: 223 DKEIVTHXQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE 270
>pdb|3HZU|A Chain A, Crystal Structure Of Probable Thiosulfate
Sulfurtransferase Ssea (Rhodanese) From Mycobacterium
Tuberculosis
Length = 318
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 134/307 (43%), Gaps = 51/307 (16%)
Query: 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN 80
E +V+ DWL A++ P L ++++ DE Y V HIPGA+ +D D
Sbjct: 39 ERLVTADWLSAHMGAPGLAIVES-----DED---VLLYDVGHIPGAV--KIDWHTDLNDP 88
Query: 81 LPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 140
+ E FA + G+ D +V+Y K + AA W+F +FGH V +L+GG
Sbjct: 89 RVRDYINGEQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRD 148
Query: 141 RW----RASGYDVES-SASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLE 195
W R + DV + + +G +++ ++A + ++ V+
Sbjct: 149 LWLAERRETTLDVPTKTCTGYPVVQ---RNDAPIRAFRDDVLAIL--------------- 190
Query: 196 QVKRNIEEGTYQLVDARSKARFDG------DAPEPRKGIRSGHVPGSKCIPFPQMLDASQ 249
G L+D RS + G D PE +R+GH+P + IP+ + D S
Sbjct: 191 --------GAQPLIDVRSPEEYTGKRTHMPDYPE-EGALRAGHIPTAVHIPWGKAADESG 241
Query: 250 TLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-LGKHDVAVYDGSWTEWG 308
+EL++ ++ I+ + V C G + L LGK DV YDGSWTEWG
Sbjct: 242 RFRSREELERLYDF--INPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWG 299
Query: 309 AQPDTPV 315
P+
Sbjct: 300 NAVRVPI 306
>pdb|3IPP|A Chain A, Crystal Structure Of Sulfur-Free Ynje
pdb|3IPP|B Chain B, Crystal Structure Of Sulfur-Free Ynje
Length = 416
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 135/316 (42%), Gaps = 51/316 (16%)
Query: 21 EPVVSVDWLHANLREP---------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDV 71
E +V WLH +L++ D KV++A+W P + Y ++HIPGA + D
Sbjct: 124 EQLVYPQWLH-DLQQGKEVTAKPAGDWKVIEAAWGAP-------KLYLISHIPGADYIDT 175
Query: 72 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR 131
+ V + L + + S+E A ++ G+ + +++Y G+ +++AARV + G
Sbjct: 176 NEV--ESEPLWNKV-SDEQLKAMLAKHGIRHDTTVILY-GRDVYAAARVAQIMLYAGVKD 231
Query: 132 VWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKF--QPH 189
V +LDGG W +G VE +V F K QP
Sbjct: 232 VRLLDGGWQTWSDAGLPVERGTPP-------------------KVKAEPDFGVKIPAQPQ 272
Query: 190 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAP-----EPR---KGIRSGHVPGSKCIPF 241
L+ +EQ + + LV RS F G +P+ G R GH GS
Sbjct: 273 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHM 331
Query: 242 PQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 301
+ T+ AD++ ++ I E+ V CGTG A + +G +V+VYD
Sbjct: 332 EDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYD 391
Query: 302 GSWTEWGAQPDTPVET 317
G W EW + P PV T
Sbjct: 392 GGWYEWSSDPKNPVAT 407
>pdb|3IPO|A Chain A, Crystal Structure Of Ynje
pdb|3IPO|B Chain B, Crystal Structure Of Ynje
Length = 416
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 124/291 (42%), Gaps = 41/291 (14%)
Query: 37 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS 96
D KV++A+W P + Y ++HIPGA + D + V + L + + S+E A ++
Sbjct: 148 DWKVIEAAWGAP-------KLYLISHIPGADYIDTNEV--ESEPLWNKV-SDEQLKAMLA 197
Query: 97 ALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGD 156
G+ + +++Y G+ +++AARV + G V +LDGG W +G VE
Sbjct: 198 KHGIRHDTTVILY-GRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPP- 255
Query: 157 AILKASAASEAIEKVYQGQVVGPTTFQTKF--QPHLIWTLEQVKRNIEEGTYQLVDARSK 214
+V F K QP L+ +EQ + + LV RS
Sbjct: 256 ------------------KVKAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSW 297
Query: 215 ARFDGDAP-----EPR---KGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGI 266
F G +P+ G R GH GS + T+ AD++ ++ I
Sbjct: 298 PEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHMEDFHNPDGTMRSADDITAMWKAWNI 356
Query: 267 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVET 317
E+ V GTG A + +G +V+VYDG W EW + P PV T
Sbjct: 357 KPEQQVSFYXGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVAT 407
>pdb|2WLX|A Chain A, Putative Thiosulfate Sulfurtransferase Ynje
Length = 423
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 134/316 (42%), Gaps = 51/316 (16%)
Query: 21 EPVVSVDWLHANLREP---------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDV 71
E +V WLH +L++ D KV++A+W P + Y ++HIPGA + D
Sbjct: 123 EQLVYPQWLH-DLQQGKEVTAKPAGDWKVIEAAWGAP-------KLYLISHIPGADYIDT 174
Query: 72 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR 131
+ V + L + + S+E A ++ G+ + +++Y G+ +++AARV + G
Sbjct: 175 NEV--ESEPLWNKV-SDEQLKAMLAKHGIRHDTTVILY-GRDVYAAARVAQIMLYAGVKD 230
Query: 132 VWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKF--QPH 189
V +LDGG W +G VE +V F K QP
Sbjct: 231 VRLLDGGWQTWSDAGLPVERGTPP-------------------KVKAEPDFGVKIPAQPQ 271
Query: 190 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAP-----EPR---KGIRSGHVPGSKCIPF 241
L+ +EQ + + LV RS F G +P+ G R GH GS
Sbjct: 272 LMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHM 330
Query: 242 PQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYD 301
+ T+ AD++ ++ I E+ V GTG A + +G +V+VYD
Sbjct: 331 EDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYXGTGWRASETFMYARAMGWKNVSVYD 390
Query: 302 GSWTEWGAQPDTPVET 317
G W EW + P PV T
Sbjct: 391 GGWYEWSSDPKNPVAT 406
>pdb|3P3A|A Chain A, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
pdb|3P3A|B Chain B, Crystal Structure Of A Putative Thiosulfate
Sulfurtransferase From Mycobacterium Thermoresistible
Length = 320
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 126/307 (41%), Gaps = 51/307 (16%)
Query: 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN 80
E +V+ DWL +NL P L ++++ DE Y HIPGA+ +D D
Sbjct: 40 ERLVTADWLASNLGRPGLVIVES-----DED---VLLYDTGHIPGAV--KIDWHTDLNDP 89
Query: 81 LPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 140
+ E FAA + G+ D +V+Y K + AA W+F +FGH V +LDGG
Sbjct: 90 AVRDYINGEQFAALMDRKGVTRDDTVVIYGDKSNWWAAYAMWVFHLFGHPDVRLLDGGRD 149
Query: 141 RWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRN 200
W ++G D +V Q G + P + + V R
Sbjct: 150 LWVSTGRDTTL------------------EVPTRQTSGYPVVERNDAPIRAFK-DDVLRV 190
Query: 201 IEEGTYQLVDARSKARFDG------DAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPA 254
+ G L+D RS + G D PE +R GH+P + +P+ S+
Sbjct: 191 L--GKEPLIDVRSPQEYTGERTHMPDYPE-EGALRGGHIPTAVSVPW------SKAAYDD 241
Query: 255 DELKKRFEQEGI-----SLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWG 308
+ R E E I +KP+V C G + L L H +V YDGSWTEWG
Sbjct: 242 GRFRARAELEEIYGFVKPDDKPIVY-CRIGERSSHTWFVLTYLLGHPNVRNYDGSWTEWG 300
Query: 309 AQPDTPV 315
P+
Sbjct: 301 NAVRVPI 307
>pdb|2WLR|A Chain A, Putative Thiosulfate Sulfurtransferase Ynje
Length = 423
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/291 (27%), Positives = 119/291 (40%), Gaps = 41/291 (14%)
Query: 37 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS 96
D KV++A+W P + Y ++HIPGA + D + V + L + + S+E A ++
Sbjct: 147 DWKVIEAAWGAP-------KLYLISHIPGADYIDTNEV--ESEPLWNKV-SDEQLKAXLA 196
Query: 97 ALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGD 156
G+ + +++Y G+ +++AARV + G V +LDGG W +G VE
Sbjct: 197 KHGIRHDTTVILY-GRDVYAAARVAQIXLYAGVKDVRLLDGGWQTWSDAGLPVERGTPP- 254
Query: 157 AILKASAASEAIEKVYQGQVVGPTTFQTKF--QPHLIWTLEQVKRNIEEGTYQLVDARSK 214
+V F K QP L EQ + + LV RS
Sbjct: 255 ------------------KVKAEPDFGVKIPAQPQLXLDXEQARGLLHRQDASLVSIRSW 296
Query: 215 ARFDGDAP-----EPR---KGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGI 266
F G +P+ G R GH GS + T AD++ ++ I
Sbjct: 297 PEFIGTTSGYSYIKPKGEIAGARWGHA-GSDSTHXEDFHNPDGTXRSADDITAXWKAWNI 355
Query: 267 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVET 317
E+ V GTG A G +V+VYDG W EW + P PV T
Sbjct: 356 KPEQQVSFYXGTGWRASETFXYARAXGWKNVSVYDGGWYEWSSDPKNPVAT 406
>pdb|1OKG|A Chain A, 3-Mercaptopyruvate Sulfurtransferase From Leishmania Major
Length = 373
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 118/299 (39%), Gaps = 47/299 (15%)
Query: 37 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR---TTNLPHMLPSEEAFAA 93
+ +++D + + + Q Y H+ A+ DVD + T+ H LP F
Sbjct: 27 EYRIVDCRYSLKIKDHGSIQ-YAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFID 85
Query: 94 AVSALGLENKDGLVVYDGK-GIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 152
A G + ++ YD + G R+WW G D +V++GG +A+G + ES
Sbjct: 86 WCXANGXAGELPVLCYDDECGAXGGCRLWWXLNSLGAD-AYVINGGFQACKAAGLEXESG 144
Query: 153 ASGDAILKASAASEAIEKVYQGQVVGPTT---FQTKFQPHLIWTLEQVKRNIEEGTYQ-- 207
+ P T F+T FQ H + ++E Q
Sbjct: 145 EPS-------------------SLPRPATHWPFKTAFQHHYL---------VDEIPPQAI 176
Query: 208 LVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA---SQTLLPADELKKRF--- 261
+ DARS RF GH+ G++ +P+ L + L +E++
Sbjct: 177 ITDARSADRFASTVRPYAADKXPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIXTV 236
Query: 262 -EQEGISLE-KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318
+ G + + V + G+GVTACI ++ LG +Y GSW+E+ P+ S
Sbjct: 237 VQGAGDAADLSSFVFSXGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIXRS 295
>pdb|2KL3|A Chain A, Solution Nmr Structure Of The Rhodanese-Like Domain From
Anabaena Sp Alr3790 Protein. Northeast Structural
Genomics Consortium Target Nsr437a
Length = 132
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 58 YQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSA 117
Y HI GA+ ++ + DR ++ LE + VY G G
Sbjct: 32 YNDGHIMGAMAMPIEDLVDRASS------------------SLEKSRDIYVY-GAGDEQT 72
Query: 118 ARVWWMFRVFGHDRVWVLDGGLPRWRASG 146
++ + R G + V L GGL W+A G
Sbjct: 73 SQAVNLLRSAGFEHVSELKGGLAAWKAIG 101
>pdb|1J0E|A Chain A, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|B Chain B, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|C Chain C, Acc Deaminase Mutant Reacton Intermediate
pdb|1J0E|D Chain D, Acc Deaminase Mutant Reacton Intermediate
Length = 341
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 254 ADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWGAQPD 312
ADE+ + + GI +K +V C TG T + G+ + G+ DV D S+T +
Sbjct: 179 ADEVINQEVELGIKFDK-IVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
Query: 313 T 313
T
Sbjct: 238 T 238
>pdb|1J0C|A Chain A, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|B Chain B, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|C Chain C, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0C|D Chain D, Acc Deaminase Mutated To Catalytic Residue
pdb|1J0D|A Chain A, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|B Chain B, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|C Chain C, Acc Deaminase Mutant Complexed With Acc
pdb|1J0D|D Chain D, Acc Deaminase Mutant Complexed With Acc
Length = 341
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 254 ADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWGAQPD 312
ADE+ + + GI +K +V C TG T + G+ + G+ DV D S+T +
Sbjct: 179 ADEVINQEVELGIKFDK-IVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
Query: 313 T 313
T
Sbjct: 238 T 238
>pdb|1F2D|A Chain A, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|B Chain B, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|C Chain C, 1-Aminocyclopropane-1-Carboxylate Deaminase
pdb|1F2D|D Chain D, 1-Aminocyclopropane-1-Carboxylate Deaminase
Length = 341
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 254 ADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSWTEWGAQPD 312
ADE+ + + GI +K +V C TG T + G+ + G+ DV D S+T +
Sbjct: 179 ADEVINQEVELGIKFDK-IVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ 237
Query: 313 T 313
T
Sbjct: 238 T 238
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 26/113 (23%)
Query: 203 EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFE 262
+G++ + + R + DG RKG HVP K PF + + LLP ++L K +
Sbjct: 17 QGSHFMANKRCQLP-DGSFRRQRKGYEEVHVPALKPKPF----GSEEQLLPVEKLPK-YA 70
Query: 263 QEGISLEKPV-----------------VTAC---GTGVTACILALGLNRLGKH 295
Q G K + + C G G T L L +GKH
Sbjct: 71 QAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKH 123
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 26/113 (23%)
Query: 203 EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFE 262
+G++ + + R + DG RKG HVP K PF + + LLP ++L K +
Sbjct: 17 QGSHFMANKRCQLP-DGSFRRQRKGYEEVHVPALKPKPF----GSEEQLLPVEKLPK-YA 70
Query: 263 QEGISLEKPV-----------------VTAC---GTGVTACILALGLNRLGKH 295
Q G K + + C G G T L L +GKH
Sbjct: 71 QAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKH 123
>pdb|3K9R|A Chain A, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|B Chain B, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|C Chain C, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c.
pdb|3K9R|D Chain D, X-Ray Structure Of The Rhodanese-Like Domain Of The
Alr3790 Protein From Anabaena Sp. Northeast Structural
Genomics Consortium Target Nsr437c
Length = 115
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 45/130 (34%), Gaps = 30/130 (23%)
Query: 19 PKEPVVSVDWLHANLR--EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVAD 76
P EP L + L EP +LD Y HI GA ++ + D
Sbjct: 2 PIEPQSDAHVLKSRLEWGEPAFTILDV---------RDRSTYNDGHIXGAXAXPIEDLVD 52
Query: 77 RTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 136
R ++ LE + VY G G ++ + R G + V L
Sbjct: 53 RASS------------------SLEKSRDIYVY-GAGDEQTSQAVNLLRSAGFEHVSELK 93
Query: 137 GGLPRWRASG 146
GGL W+A G
Sbjct: 94 GGLAAWKAIG 103
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 272 VVTACGTGVTACILALGLNRLGKHDVAVYDGS 303
VVTAC TG A AL + +LG+ D+ + G+
Sbjct: 157 VVTACATGADALGSALRMIQLGEADLVLAGGT 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,308,899
Number of Sequences: 62578
Number of extensions: 446292
Number of successful extensions: 1436
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1345
Number of HSP's gapped (non-prelim): 45
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)