Query 020963
Match_columns 319
No_of_seqs 166 out of 2234
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02723 3-mercaptopyruvate su 100.0 3.6E-60 7.9E-65 437.9 29.5 319 1-319 1-319 (320)
2 COG2897 SseA Rhodanese-related 100.0 1.1E-55 2.3E-60 395.0 26.2 279 17-319 6-284 (285)
3 PRK11493 sseA 3-mercaptopyruva 100.0 7.8E-53 1.7E-57 383.2 28.9 277 21-319 4-281 (281)
4 PRK09629 bifunctional thiosulf 100.0 8.3E-51 1.8E-55 401.5 29.1 266 20-318 7-272 (610)
5 KOG1529 Mercaptopyruvate sulfu 100.0 1.6E-43 3.4E-48 309.5 22.9 270 20-309 3-275 (286)
6 cd01445 TST_Repeats Thiosulfat 99.9 4E-23 8.6E-28 168.2 12.4 119 24-143 1-137 (138)
7 cd01449 TST_Repeat_2 Thiosulfa 99.9 3.9E-23 8.4E-28 163.9 12.0 118 192-309 1-118 (118)
8 cd01445 TST_Repeats Thiosulfat 99.9 1.2E-22 2.7E-27 165.3 11.3 118 192-309 1-138 (138)
9 PRK00142 putative rhodanese-re 99.9 3.4E-23 7.4E-28 190.2 5.8 203 12-310 4-212 (314)
10 cd01448 TST_Repeat_1 Thiosulfa 99.9 1.2E-21 2.6E-26 156.3 13.3 122 23-146 1-122 (122)
11 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 1.3E-21 2.8E-26 163.5 12.9 136 3-149 15-162 (162)
12 cd01448 TST_Repeat_1 Thiosulfa 99.9 9.1E-22 2E-26 157.0 10.4 109 191-310 1-121 (122)
13 cd01519 RHOD_HSP67B2 Member of 99.9 1.6E-21 3.4E-26 151.6 8.4 104 193-309 2-106 (106)
14 PLN02160 thiosulfate sulfurtra 99.9 4.8E-21 1E-25 155.6 10.7 111 191-317 16-128 (136)
15 PRK11493 sseA 3-mercaptopyruva 99.8 4.1E-21 8.8E-26 174.9 10.3 127 190-318 5-136 (281)
16 KOG1530 Rhodanese-related sulf 99.8 4.6E-21 9.9E-26 148.9 8.1 114 189-316 22-135 (136)
17 cd01533 4RHOD_Repeat_2 Member 99.8 9.4E-21 2E-25 148.2 10.0 98 190-311 10-109 (109)
18 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 2.3E-20 4.9E-25 156.0 11.4 121 187-315 33-162 (162)
19 cd01518 RHOD_YceA Member of th 99.8 1.7E-20 3.7E-25 144.7 9.1 99 191-309 3-101 (101)
20 cd01519 RHOD_HSP67B2 Member of 99.8 3.1E-20 6.7E-25 144.3 9.7 104 25-144 2-106 (106)
21 cd01449 TST_Repeat_2 Thiosulfa 99.8 3.6E-20 7.8E-25 146.8 9.5 107 24-144 1-118 (118)
22 cd01527 RHOD_YgaP Member of th 99.8 2.8E-20 6.2E-25 142.8 8.1 97 191-315 3-99 (99)
23 cd01533 4RHOD_Repeat_2 Member 99.8 9.2E-20 2E-24 142.6 11.1 99 21-146 9-109 (109)
24 PLN02723 3-mercaptopyruvate su 99.8 4.9E-20 1.1E-24 170.5 10.9 119 188-318 20-152 (320)
25 PRK00162 glpE thiosulfate sulf 99.8 9.5E-20 2.1E-24 142.2 9.5 102 190-318 5-106 (108)
26 PRK09629 bifunctional thiosulf 99.8 6.9E-20 1.5E-24 181.8 10.8 117 190-318 9-130 (610)
27 TIGR03167 tRNA_sel_U_synt tRNA 99.8 3.4E-19 7.3E-24 163.2 14.2 193 37-284 2-211 (311)
28 cd01520 RHOD_YbbB Member of th 99.8 6.7E-20 1.5E-24 147.5 8.4 105 192-309 1-126 (128)
29 cd01518 RHOD_YceA Member of th 99.8 1.1E-19 2.4E-24 140.1 9.1 99 22-143 2-100 (101)
30 cd01526 RHOD_ThiF Member of th 99.8 8.4E-20 1.8E-24 145.7 7.1 105 190-311 8-115 (122)
31 cd01520 RHOD_YbbB Member of th 99.8 3.2E-19 7E-24 143.6 10.2 110 24-144 1-126 (128)
32 smart00450 RHOD Rhodanese Homo 99.8 3.3E-19 7.2E-24 135.7 8.6 98 204-314 3-100 (100)
33 cd01525 RHOD_Kc Member of the 99.8 6.3E-19 1.4E-23 136.7 9.9 102 24-143 1-104 (105)
34 cd01447 Polysulfide_ST Polysul 99.8 1.8E-19 3.8E-24 139.1 6.7 102 192-310 1-102 (103)
35 cd01534 4RHOD_Repeat_3 Member 99.8 3.4E-19 7.5E-24 135.8 8.2 93 192-309 1-95 (95)
36 cd01523 RHOD_Lact_B Member of 99.8 4.5E-19 9.8E-24 136.4 8.5 99 192-309 1-100 (100)
37 cd01525 RHOD_Kc Member of the 99.8 3.6E-19 7.7E-24 138.1 8.0 99 192-308 1-104 (105)
38 cd01527 RHOD_YgaP Member of th 99.8 8.1E-19 1.8E-23 134.7 9.8 98 22-149 2-99 (99)
39 PRK11784 tRNA 2-selenouridine 99.8 2.2E-18 4.8E-23 160.0 14.5 171 25-241 4-191 (345)
40 cd01444 GlpE_ST GlpE sulfurtra 99.8 6.1E-19 1.3E-23 134.4 8.7 92 192-309 2-96 (96)
41 cd01528 RHOD_2 Member of the R 99.8 6E-19 1.3E-23 136.0 8.7 95 192-310 2-99 (101)
42 COG2897 SseA Rhodanese-related 99.8 8E-19 1.7E-23 157.6 10.8 120 187-318 8-139 (285)
43 PRK00162 glpE thiosulfate sulf 99.8 2.1E-18 4.6E-23 134.6 11.2 104 20-152 3-106 (108)
44 PRK08762 molybdopterin biosynt 99.8 8.3E-18 1.8E-22 159.1 16.6 105 21-153 2-106 (376)
45 cd01524 RHOD_Pyr_redox Member 99.8 1.4E-18 3.1E-23 131.0 8.8 89 192-308 1-89 (90)
46 KOG1530 Rhodanese-related sulf 99.8 3E-18 6.5E-23 133.2 10.6 116 19-150 20-135 (136)
47 cd01521 RHOD_PspE2 Member of t 99.8 7E-19 1.5E-23 137.8 7.2 99 190-315 8-110 (110)
48 PF00581 Rhodanese: Rhodanese- 99.8 4.2E-19 9.1E-24 138.8 5.0 105 193-309 1-112 (113)
49 cd01534 4RHOD_Repeat_3 Member 99.8 3.3E-18 7.2E-23 130.4 9.5 93 24-144 1-95 (95)
50 cd01522 RHOD_1 Member of the R 99.8 1.5E-18 3.3E-23 137.4 7.9 103 192-310 1-105 (117)
51 cd01521 RHOD_PspE2 Member of t 99.8 3.6E-18 7.8E-23 133.8 9.8 101 21-149 7-110 (110)
52 cd01447 Polysulfide_ST Polysul 99.8 4.2E-18 9.1E-23 131.4 9.2 102 24-146 1-103 (103)
53 cd01529 4RHOD_Repeats Member o 99.8 2.3E-18 5.1E-23 131.4 7.5 87 203-309 10-96 (96)
54 PLN02160 thiosulfate sulfurtra 99.8 1.1E-17 2.4E-22 135.9 11.7 115 21-153 14-130 (136)
55 smart00450 RHOD Rhodanese Homo 99.7 8.1E-18 1.7E-22 128.0 10.2 99 35-148 2-100 (100)
56 cd01526 RHOD_ThiF Member of th 99.7 5E-18 1.1E-22 135.5 9.2 113 17-149 3-118 (122)
57 cd01530 Cdc25 Cdc25 phosphatas 99.7 4.6E-18 1E-22 135.4 8.2 95 191-308 3-120 (121)
58 cd01535 4RHOD_Repeat_4 Member 99.7 5.8E-18 1.2E-22 139.0 8.9 87 205-318 11-97 (145)
59 PF00581 Rhodanese: Rhodanese- 99.7 8.5E-18 1.8E-22 131.4 9.0 106 25-145 1-113 (113)
60 cd01530 Cdc25 Cdc25 phosphatas 99.7 9.2E-18 2E-22 133.7 9.0 99 22-143 2-120 (121)
61 cd01528 RHOD_2 Member of the R 99.7 1.6E-17 3.5E-22 127.9 9.9 94 24-144 2-98 (101)
62 cd01523 RHOD_Lact_B Member of 99.7 1.5E-17 3.2E-22 127.9 9.5 98 24-143 1-99 (100)
63 cd01444 GlpE_ST GlpE sulfurtra 99.7 4.2E-17 9.1E-22 124.2 9.6 92 23-143 1-95 (96)
64 cd01529 4RHOD_Repeats Member o 99.7 4.1E-17 8.8E-22 124.5 8.8 94 26-144 3-96 (96)
65 cd01524 RHOD_Pyr_redox Member 99.7 6.2E-17 1.3E-21 122.1 9.6 89 24-143 1-89 (90)
66 PRK08762 molybdopterin biosynt 99.7 4.3E-17 9.3E-22 154.3 9.5 102 191-318 4-105 (376)
67 cd01531 Acr2p Eukaryotic arsen 99.7 5.3E-17 1.2E-21 127.7 8.5 101 22-145 2-112 (113)
68 cd01522 RHOD_1 Member of the R 99.7 5.8E-17 1.3E-21 128.4 8.5 104 24-146 1-106 (117)
69 TIGR02981 phageshock_pspE phag 99.7 4E-17 8.7E-22 125.5 7.3 81 204-309 17-97 (101)
70 cd01535 4RHOD_Repeat_4 Member 99.7 1E-16 2.2E-21 131.6 9.9 96 29-153 2-98 (145)
71 cd01531 Acr2p Eukaryotic arsen 99.7 6.2E-17 1.3E-21 127.4 8.1 99 191-310 3-112 (113)
72 cd00158 RHOD Rhodanese Homolog 99.7 4.7E-17 1E-21 121.6 6.9 86 199-308 4-89 (89)
73 cd01532 4RHOD_Repeat_1 Member 99.7 9.4E-17 2E-21 121.6 7.4 84 201-309 6-92 (92)
74 PRK10287 thiosulfate:cyanide s 99.7 8.5E-17 1.8E-21 124.3 7.0 81 204-309 19-99 (104)
75 COG0607 PspE Rhodanese-related 99.7 1.4E-16 3E-21 124.2 8.1 97 197-318 12-109 (110)
76 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 2E-16 4.3E-21 124.5 8.8 99 22-143 2-112 (113)
77 cd01532 4RHOD_Repeat_1 Member 99.7 3.4E-16 7.4E-21 118.5 9.3 87 32-144 5-92 (92)
78 PRK01415 hypothetical protein; 99.7 2E-16 4.4E-21 139.6 8.9 102 188-310 110-212 (247)
79 cd00158 RHOD Rhodanese Homolog 99.6 5.3E-16 1.1E-20 115.9 8.2 88 29-143 2-89 (89)
80 cd01443 Cdc25_Acr2p Cdc25 enzy 99.6 5.4E-16 1.2E-20 122.0 8.2 98 191-309 3-113 (113)
81 PRK00142 putative rhodanese-re 99.6 1.7E-15 3.7E-20 139.3 10.7 103 19-145 109-212 (314)
82 cd01446 DSP_MapKP N-terminal r 99.6 1.3E-15 2.9E-20 123.1 7.9 109 23-144 1-126 (132)
83 PRK01415 hypothetical protein; 99.6 2.3E-15 5E-20 132.9 9.0 103 20-146 110-213 (247)
84 PRK07878 molybdopterin biosynt 99.6 1.3E-15 2.9E-20 144.6 7.7 100 188-311 285-385 (392)
85 PRK05320 rhodanese superfamily 99.6 2.3E-15 5E-20 134.7 8.5 101 190-310 110-216 (257)
86 TIGR02981 phageshock_pspE phag 99.6 6.1E-15 1.3E-19 113.4 8.9 80 37-144 18-97 (101)
87 PRK10287 thiosulfate:cyanide s 99.6 8.1E-15 1.8E-19 113.2 8.9 80 37-144 20-99 (104)
88 PRK07411 hypothetical protein; 99.5 8.6E-15 1.9E-19 138.9 7.5 103 190-315 282-386 (390)
89 PRK05320 rhodanese superfamily 99.5 2.1E-14 4.4E-19 128.6 9.5 101 21-144 109-215 (257)
90 PRK07878 molybdopterin biosynt 99.5 2.5E-14 5.5E-19 135.9 10.2 102 19-147 284-386 (392)
91 COG0607 PspE Rhodanese-related 99.5 5.5E-14 1.2E-18 109.4 10.0 99 26-151 9-108 (110)
92 cd01446 DSP_MapKP N-terminal r 99.5 1.2E-14 2.6E-19 117.5 6.2 105 191-310 1-127 (132)
93 PRK05597 molybdopterin biosynt 99.5 2.4E-14 5.2E-19 134.3 7.8 95 189-309 260-354 (355)
94 PRK11784 tRNA 2-selenouridine 99.5 6.8E-14 1.5E-18 130.1 8.6 104 194-311 5-130 (345)
95 KOG1529 Mercaptopyruvate sulfu 99.5 2.3E-13 5E-18 120.0 9.8 125 190-318 5-137 (286)
96 TIGR03167 tRNA_sel_U_synt tRNA 99.5 9.7E-14 2.1E-18 127.3 6.5 98 205-315 2-119 (311)
97 PRK05597 molybdopterin biosynt 99.4 3E-13 6.6E-18 126.9 9.3 96 21-145 260-355 (355)
98 PRK07411 hypothetical protein; 99.4 3.6E-13 7.8E-18 127.8 9.6 106 19-149 279-386 (390)
99 PRK05600 thiamine biosynthesis 99.4 2.5E-13 5.3E-18 127.9 6.7 94 191-305 272-369 (370)
100 PRK05600 thiamine biosynthesis 99.3 8E-12 1.7E-16 117.7 7.5 95 22-140 271-369 (370)
101 PRK01269 tRNA s(4)U8 sulfurtra 99.1 6.7E-11 1.4E-15 115.4 6.5 73 204-302 406-482 (482)
102 COG1054 Predicted sulfurtransf 99.0 8.4E-10 1.8E-14 98.2 7.1 102 189-311 112-214 (308)
103 KOG3772 M-phase inducer phosph 99.0 8E-10 1.7E-14 99.8 6.6 102 19-145 153-276 (325)
104 KOG2017 Molybdopterin synthase 98.9 1.5E-09 3.3E-14 98.0 5.7 106 186-311 313-420 (427)
105 COG1054 Predicted sulfurtransf 98.9 1.8E-09 4E-14 96.0 5.8 102 21-145 112-213 (308)
106 PRK01269 tRNA s(4)U8 sulfurtra 98.8 1.3E-08 2.8E-13 99.4 8.8 80 28-137 399-482 (482)
107 KOG2017 Molybdopterin synthase 98.7 1.5E-08 3.3E-13 91.6 5.5 106 17-145 312-419 (427)
108 KOG3772 M-phase inducer phosph 98.7 2.3E-08 4.9E-13 90.5 6.3 99 190-310 156-276 (325)
109 COG5105 MIH1 Mitotic inducer, 98.4 9.3E-07 2E-11 79.2 7.8 101 19-144 239-357 (427)
110 COG5105 MIH1 Mitotic inducer, 97.7 0.00013 2.7E-09 65.8 7.2 98 190-310 242-358 (427)
111 TIGR01244 conserved hypothetic 96.7 0.013 2.9E-07 47.2 9.2 94 191-295 14-113 (135)
112 PF04273 DUF442: Putative phos 96.7 0.011 2.4E-07 46.0 7.7 88 191-290 14-107 (110)
113 COG2603 Predicted ATPase [Gene 96.6 0.0041 8.9E-08 55.7 5.9 145 29-241 7-168 (334)
114 KOG1717 Dual specificity phosp 96.1 0.005 1.1E-07 54.4 3.1 107 22-145 4-124 (343)
115 KOG1093 Predicted protein kina 94.4 0.0081 1.8E-07 58.5 -0.9 97 21-141 621-717 (725)
116 KOG3636 Uncharacterized conser 93.6 0.23 4.9E-06 47.3 6.9 100 23-143 308-427 (669)
117 COG3453 Uncharacterized protei 89.7 0.78 1.7E-05 35.9 4.9 90 191-291 15-109 (130)
118 COG2603 Predicted ATPase [Gene 88.7 0.58 1.2E-05 42.3 4.0 92 204-307 14-126 (334)
119 TIGR01244 conserved hypothetic 87.2 3.2 7E-05 33.3 7.3 109 22-150 13-129 (135)
120 PF04273 DUF442: Putative phos 87.1 1.4 3.1E-05 34.2 4.9 90 22-123 13-105 (110)
121 KOG1717 Dual specificity phosp 83.8 3 6.5E-05 37.3 5.9 99 191-310 5-124 (343)
122 PLN02727 NAD kinase 82.8 5.2 0.00011 42.1 8.0 88 190-283 267-355 (986)
123 smart00195 DSPc Dual specifici 82.5 4.1 8.9E-05 32.4 5.9 30 266-295 75-107 (138)
124 cd00127 DSPc Dual specificity 81.9 4.6 9.9E-05 31.9 6.0 27 268-294 80-109 (139)
125 KOG1093 Predicted protein kina 79.3 0.36 7.8E-06 47.4 -1.5 94 190-307 622-718 (725)
126 PF09992 DUF2233: Predicted pe 74.5 2.7 5.9E-05 34.9 2.7 43 99-141 96-142 (170)
127 PF13350 Y_phosphatase3: Tyros 72.1 8.7 0.00019 31.7 5.2 99 22-130 28-152 (164)
128 KOG3636 Uncharacterized conser 70.9 3.7 8.1E-05 39.4 2.9 32 205-247 326-357 (669)
129 COG2453 CDC14 Predicted protei 68.0 17 0.00037 30.6 6.2 31 265-295 101-134 (180)
130 PTZ00393 protein tyrosine phos 67.9 12 0.00026 33.2 5.3 44 252-295 151-198 (241)
131 PTZ00242 protein tyrosine phos 66.7 14 0.00031 30.7 5.4 18 266-283 95-113 (166)
132 COG2453 CDC14 Predicted protei 61.1 17 0.00036 30.7 4.8 47 84-130 84-134 (180)
133 PF13350 Y_phosphatase3: Tyros 59.4 17 0.00037 29.9 4.5 41 254-295 110-152 (164)
134 PF00782 DSPc: Dual specificit 58.6 11 0.00023 29.6 3.0 40 255-295 60-102 (133)
135 PF05706 CDKN3: Cyclin-depende 58.3 16 0.00035 30.5 4.1 34 255-293 124-159 (168)
136 PF09992 DUF2233: Predicted pe 55.8 5.7 0.00012 32.9 1.1 44 265-308 96-144 (170)
137 PLN02727 NAD kinase 50.8 58 0.0013 34.7 7.4 85 21-117 266-355 (986)
138 TIGR01796 CM_mono_aroH monofun 48.8 16 0.00034 28.6 2.4 47 255-301 24-73 (117)
139 cd00127 DSPc Dual specificity 46.0 39 0.00085 26.4 4.5 28 102-129 80-109 (139)
140 KOG0333 U5 snRNP-like RNA heli 45.6 35 0.00076 33.9 4.7 53 84-138 498-550 (673)
141 PF03162 Y_phosphatase2: Tyros 44.9 23 0.00049 29.5 3.0 28 268-295 90-119 (164)
142 PRK12361 hypothetical protein; 44.7 71 0.0015 31.9 7.0 78 194-283 110-190 (547)
143 KOG0333 U5 snRNP-like RNA heli 44.6 40 0.00086 33.5 4.9 46 255-304 506-551 (673)
144 COG2518 Pcm Protein-L-isoaspar 44.3 62 0.0014 28.1 5.6 55 257-311 61-137 (209)
145 COG2518 Pcm Protein-L-isoaspar 43.5 60 0.0013 28.2 5.4 58 88-145 58-136 (209)
146 PF01451 LMWPc: Low molecular 42.2 16 0.00035 28.9 1.7 36 272-307 1-41 (138)
147 smart00226 LMWPc Low molecular 41.1 32 0.00069 27.3 3.3 37 272-308 1-38 (140)
148 COG0169 AroE Shikimate 5-dehyd 40.7 63 0.0014 29.5 5.4 52 86-139 106-160 (283)
149 COG0373 HemA Glutamyl-tRNA red 39.7 2.3E+02 0.0049 27.4 9.2 117 102-245 177-298 (414)
150 PRK12550 shikimate 5-dehydroge 39.4 79 0.0017 28.6 5.9 50 87-138 106-155 (272)
151 PTZ00393 protein tyrosine phos 37.3 74 0.0016 28.3 5.1 45 85-129 150-197 (241)
152 PF05706 CDKN3: Cyclin-depende 36.5 40 0.00087 28.2 3.2 43 86-128 114-159 (168)
153 COG0062 Uncharacterized conser 36.3 76 0.0016 27.4 4.9 32 269-301 49-83 (203)
154 PTZ00175 diphthine synthase; P 35.9 3.3E+02 0.0072 24.6 10.3 34 118-152 94-129 (270)
155 PLN02645 phosphoglycolate phos 35.1 78 0.0017 29.1 5.3 24 20-43 12-35 (311)
156 PF03853 YjeF_N: YjeF-related 34.4 88 0.0019 25.9 5.0 33 266-299 22-57 (169)
157 COG4566 TtrR Response regulato 34.1 3.1E+02 0.0066 23.6 8.9 32 104-137 5-36 (202)
158 TIGR00853 pts-lac PTS system, 34.0 52 0.0011 24.6 3.2 38 269-307 3-44 (95)
159 cd00079 HELICc Helicase superf 33.7 1.3E+02 0.0027 22.7 5.6 47 256-304 16-62 (131)
160 KOG0330 ATP-dependent RNA heli 33.6 47 0.001 31.8 3.4 48 255-306 289-336 (476)
161 smart00195 DSPc Dual specifici 33.6 1E+02 0.0022 24.1 5.1 31 100-130 75-107 (138)
162 PRK12749 quinate/shikimate deh 32.9 1E+02 0.0022 28.1 5.5 67 65-136 89-155 (288)
163 PF13344 Hydrolase_6: Haloacid 32.3 1.4E+02 0.0031 22.3 5.5 42 85-130 16-57 (101)
164 TIGR02689 ars_reduc_gluta arse 32.0 74 0.0016 24.9 4.0 35 271-305 2-37 (126)
165 PRK10310 PTS system galactitol 31.8 95 0.0021 23.0 4.3 37 271-308 4-45 (94)
166 PRK12548 shikimate 5-dehydroge 30.7 1E+02 0.0023 28.0 5.3 50 87-138 109-159 (289)
167 PF07736 CM_1: Chorismate muta 30.7 30 0.00065 27.1 1.4 47 255-301 24-73 (118)
168 PF00782 DSPc: Dual specificit 30.1 82 0.0018 24.4 4.0 41 89-130 60-102 (133)
169 PRK05852 acyl-CoA synthetase; 30.0 99 0.0021 30.3 5.4 41 255-295 54-94 (534)
170 TIGR00614 recQ_fam ATP-depende 29.2 1.1E+02 0.0023 30.0 5.3 48 255-305 214-261 (470)
171 PRK11391 etp phosphotyrosine-p 28.5 82 0.0018 25.4 3.8 38 270-308 3-41 (144)
172 PRK09590 celB cellobiose phosp 28.2 61 0.0013 24.7 2.8 36 271-307 3-42 (104)
173 PTZ00242 protein tyrosine phos 28.2 1.3E+02 0.0027 25.0 4.9 19 101-119 96-114 (166)
174 PRK04537 ATP-dependent RNA hel 28.2 1.1E+02 0.0025 30.7 5.5 38 267-305 255-292 (572)
175 PRK12361 hypothetical protein; 28.1 1.5E+02 0.0032 29.7 6.3 39 86-124 156-198 (547)
176 PRK10126 tyrosine phosphatase; 27.8 81 0.0018 25.4 3.6 38 270-308 3-41 (147)
177 TIGR00640 acid_CoA_mut_C methy 27.8 2.7E+02 0.0059 22.1 6.6 48 87-138 41-91 (132)
178 PF03610 EIIA-man: PTS system 27.6 1.6E+02 0.0034 22.5 5.1 46 255-302 45-90 (116)
179 PRK12549 shikimate 5-dehydroge 27.5 1.4E+02 0.0031 27.1 5.5 67 65-136 92-158 (284)
180 TIGR02190 GlrX-dom Glutaredoxi 27.4 1.1E+02 0.0023 21.6 3.8 30 101-130 5-34 (79)
181 cd02185 AroH Chorismate mutase 26.9 62 0.0013 25.3 2.6 47 255-301 24-73 (117)
182 PF01488 Shikimate_DH: Shikima 26.5 1.3E+02 0.0029 23.7 4.7 38 102-141 11-48 (135)
183 PF03162 Y_phosphatase2: Tyros 26.2 74 0.0016 26.4 3.2 42 86-127 74-115 (164)
184 smart00012 PTPc_DSPc Protein t 25.8 1.1E+02 0.0023 22.1 3.8 16 268-283 38-54 (105)
185 smart00404 PTPc_motif Protein 25.8 1.1E+02 0.0023 22.1 3.8 16 268-283 38-54 (105)
186 PF01451 LMWPc: Low molecular 25.5 60 0.0013 25.6 2.4 37 106-142 1-41 (138)
187 PF07879 PHB_acc_N: PHB/PHA ac 25.2 91 0.002 21.6 2.8 35 10-44 4-41 (64)
188 PF00501 AMP-binding: AMP-bind 24.5 1.5E+02 0.0032 27.7 5.3 41 255-295 32-72 (417)
189 PF14566 PTPlike_phytase: Inos 24.4 1.1E+02 0.0024 24.7 3.9 32 249-280 103-135 (149)
190 cd05565 PTS_IIB_lactose PTS_II 24.4 66 0.0014 24.3 2.3 36 272-308 3-42 (99)
191 cd05564 PTS_IIB_chitobiose_lic 24.3 75 0.0016 23.6 2.6 35 272-307 2-40 (96)
192 PRK12550 shikimate 5-dehydroge 23.6 2.3E+02 0.0051 25.5 6.2 48 255-303 108-155 (272)
193 COG4822 CbiK Cobalamin biosynt 23.5 1.6E+02 0.0035 25.8 4.7 35 266-300 134-173 (265)
194 smart00226 LMWPc Low molecular 23.4 1.1E+02 0.0023 24.2 3.5 37 106-142 1-37 (140)
195 PF03853 YjeF_N: YjeF-related 23.3 2.2E+02 0.0049 23.4 5.6 34 100-134 22-57 (169)
196 PLN03050 pyridoxine (pyridoxam 23.3 1E+02 0.0022 27.4 3.7 30 270-300 61-93 (246)
197 PRK08593 4-aminobutyrate amino 23.0 1.8E+02 0.0038 28.3 5.6 54 255-308 88-143 (445)
198 PRK08117 4-aminobutyrate amino 22.8 1.4E+02 0.0029 28.8 4.7 54 255-309 89-144 (433)
199 COG0513 SrmB Superfamily II DN 22.5 1.6E+02 0.0035 29.2 5.3 34 271-305 275-308 (513)
200 TIGR01809 Shik-DH-AROM shikima 22.4 2.2E+02 0.0049 25.7 5.8 50 87-138 106-158 (282)
201 cd00115 LMWPc Substituted upda 22.3 72 0.0016 25.3 2.3 37 271-307 2-40 (141)
202 TIGR02804 ExbD_2 TonB system t 22.3 2.5E+02 0.0055 21.7 5.4 46 253-300 70-118 (121)
203 TIGR01587 cas3_core CRISPR-ass 22.0 1.5E+02 0.0033 27.4 4.8 48 255-304 210-258 (358)
204 PRK11057 ATP-dependent DNA hel 21.9 1.4E+02 0.003 30.4 4.8 47 255-305 225-271 (607)
205 PRK11776 ATP-dependent RNA hel 21.9 1.8E+02 0.0039 28.2 5.4 36 269-305 242-277 (460)
206 TIGR01389 recQ ATP-dependent D 21.9 1.9E+02 0.004 29.2 5.7 47 255-305 213-259 (591)
207 COG3453 Uncharacterized protei 21.7 1.8E+02 0.0038 23.1 4.2 83 21-115 13-99 (130)
208 PRK13809 orotate phosphoribosy 21.4 2.8E+02 0.0061 23.9 6.0 53 100-153 115-176 (206)
209 PF02302 PTS_IIB: PTS system, 21.4 93 0.002 22.3 2.6 31 272-303 2-37 (90)
210 TIGR03372 putres_am_tran putre 21.3 1.4E+02 0.0031 29.0 4.5 53 255-308 120-177 (442)
211 COG4822 CbiK Cobalamin biosynt 21.2 3.2E+02 0.0068 24.1 6.0 50 87-136 119-174 (265)
212 COG2519 GCD14 tRNA(1-methylade 20.9 2.2E+02 0.0048 25.5 5.2 44 255-300 176-219 (256)
213 PF00102 Y_phosphatase: Protei 20.9 1.2E+02 0.0025 25.9 3.6 35 103-137 41-75 (235)
214 TIGR03089 conserved hypothetic 20.9 2.2E+02 0.0047 24.7 5.3 40 255-294 38-78 (227)
215 PRK07678 aminotransferase; Val 20.8 1.5E+02 0.0032 28.9 4.6 53 255-309 92-152 (451)
216 PLN03049 pyridoxine (pyridoxam 20.8 1.9E+02 0.0042 28.3 5.3 31 269-300 59-92 (462)
217 COG1165 MenD 2-succinyl-6-hydr 20.6 83 0.0018 31.4 2.7 68 231-299 27-100 (566)
218 COG0698 RpiB Ribose 5-phosphat 20.6 2.7E+02 0.0059 22.9 5.3 20 268-287 58-77 (151)
219 COG0541 Ffh Signal recognition 20.5 8.1E+02 0.018 24.0 10.3 46 255-302 202-251 (451)
220 PRK06918 4-aminobutyrate amino 20.5 2.4E+02 0.0051 27.4 5.9 55 255-309 100-156 (451)
221 PTZ00110 helicase; Provisional 20.4 1.9E+02 0.0041 29.0 5.3 48 255-304 364-411 (545)
222 TIGR00700 GABAtrnsam 4-aminobu 20.3 2.1E+02 0.0046 27.4 5.5 54 255-308 79-134 (420)
223 TIGR02691 arsC_pI258_fam arsen 20.3 1.2E+02 0.0027 23.8 3.3 34 272-305 1-35 (129)
224 PRK13530 arsenate reductase; P 20.2 1.6E+02 0.0035 23.3 3.9 36 270-305 4-40 (133)
225 COG1891 Uncharacterized protei 20.2 1.1E+02 0.0023 25.9 2.9 25 191-216 7-31 (235)
226 PRK05769 4-aminobutyrate amino 20.0 2.4E+02 0.0051 27.4 5.8 54 255-308 100-155 (441)
No 1
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=100.00 E-value=3.6e-60 Score=437.90 Aligned_cols=319 Identities=85% Similarity=1.393 Sum_probs=285.0
Q ss_pred CcccccccCccccccCCCCCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCC
Q 020963 1 MSSLAAGRRADYSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTN 80 (319)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~ 80 (319)
|.|+.++-.++|++.++.+...+|+++||.+++++++++|||+|+..+...|++..+|..||||||+|+|+..+......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~ 80 (320)
T PLN02723 1 MASSGSETKANYSTQSISTNEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTD 80 (320)
T ss_pred CCccchhhcccCcccccccCCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCC
Confidence 67777888899999999998999999999999988789999999877766665557899999999999998877665556
Q ss_pred CCCCCCCHHHHHHHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccCCCcchhhh
Q 020963 81 LPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILK 160 (319)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~ 160 (319)
...++|+.++|++.++++||+++++|||||+.+...+++++|+|+.+||++|++|+||+.+|.++|+|+++..+.+++++
T Consensus 81 ~~~~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~ 160 (320)
T PLN02723 81 LPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILK 160 (320)
T ss_pred cCCCCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCcccccc
Confidence 67889999999999999999999999999988877789999999999999999999999999999999998765555566
Q ss_pred hhhhHHHHHHHhcCcccCCcccccccCCccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccC
Q 020963 161 ASAASEAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIP 240 (319)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip 240 (319)
...+++.+++.++++.+....|....++..+++.+++.+++++++++|||+|+..+|.|....+....+.||||||+|||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip 240 (320)
T PLN02723 161 ASAASEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVP 240 (320)
T ss_pred ccccccccccccccCCCCCCcccccCCccceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccC
Confidence 56666677777766677778888888888999999999999877889999999999999876665556899999999999
Q ss_pred cccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccCC
Q 020963 241 FPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETSS 319 (319)
Q Consensus 241 ~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~~ 319 (319)
+.++.+.++.|+++++|++++.+.|++++++||+||++|.+|+.++++|+.+||++|++|+|||.+|....++|++++.
T Consensus 241 ~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~~ 319 (320)
T PLN02723 241 FPQMLDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATST 319 (320)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCCC
Confidence 9998888889999999999999999999999999999999999999999999999999999999999998889999863
No 2
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-55 Score=394.97 Aligned_cols=279 Identities=42% Similarity=0.801 Sum_probs=254.2
Q ss_pred CCCCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHH
Q 020963 17 VSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS 96 (319)
Q Consensus 17 ~~~~~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (319)
..+...+||++||.+++.+++++++|+|+..+...+ ...|..+|||||+++++.........+++++|++++|.++|+
T Consensus 6 ~~~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~--~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~ 83 (285)
T COG2897 6 LMSSEFLVSPDWLAENLDDPAVVIVDARIILPDPDD--AEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLG 83 (285)
T ss_pred ccCcceEEcHHHHHhhccccccccCceEEEeCCcch--HHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 345688999999999999888888888877766543 579999999999999998765555557899999999999999
Q ss_pred hCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccCCCcchhhhhhhhHHHHHHHhcCcc
Q 020963 97 ALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQV 176 (319)
Q Consensus 97 ~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (319)
++||+.+++||+|++.+...|+|++|+|+.+|+++|++|+||+.+|+++|+|+++.+ +.
T Consensus 84 ~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~---------------------~~ 142 (285)
T COG2897 84 ELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEP---------------------PE 142 (285)
T ss_pred HcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCC---------------------CC
Confidence 999999999999998888889999999999999999999999999999999999965 34
Q ss_pred cCCcccccccCCccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHH
Q 020963 177 VGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADE 256 (319)
Q Consensus 177 ~~~~~~~~~~~~~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~ 256 (319)
.+...|..+++....++.+.++..++.+..+|||+|++++|.|...+|.... .||||||+||||..+.+..+.|+++++
T Consensus 143 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~-~GHIPGAiNipw~~~~~~~~~~~~~~~ 221 (285)
T COG2897 143 PPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGK-AGHIPGAINIPWTDLVDDGGLFKSPEE 221 (285)
T ss_pred CCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCC-CCCCCCCcCcCHHHHhcCCCccCcHHH
Confidence 5777888889999999999999999988999999999999999988886553 899999999999999997788999999
Q ss_pred HHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccCC
Q 020963 257 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETSS 319 (319)
Q Consensus 257 l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~~ 319 (319)
++.+++..|++++++||+||++|.+|+..+++|+.+|+.+.++|+|||.+|.+..+.|+++|.
T Consensus 222 ~~~l~~~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 222 IARLYADAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred HHHHHHhcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 999999999999999999999999999999999999999889999999999999888999874
No 3
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=100.00 E-value=7.8e-53 Score=383.20 Aligned_cols=277 Identities=39% Similarity=0.805 Sum_probs=239.9
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCC-CchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCC
Q 020963 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQR-NPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 99 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r-~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (319)
..+|+++||.+++++++++|||||....+... +...+|..||||||+|+|+..+.......+.++++.++|++.++++|
T Consensus 4 ~~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (281)
T PRK11493 4 TWFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELG 83 (281)
T ss_pred CcccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 47899999999999888999999943322211 12578999999999999988766555556678889999999999999
Q ss_pred CCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccCCCcchhhhhhhhHHHHHHHhcCcccCC
Q 020963 100 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGP 179 (319)
Q Consensus 100 i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (319)
++++++||+||..+.+.+++++|+|+.+||++|++|+||+.+|.++|+|+++... .+..
T Consensus 84 i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~---------------------~~~~ 142 (281)
T PRK11493 84 VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV---------------------ELPE 142 (281)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC---------------------CCCC
Confidence 9999999999987766688999999999999999999999999999999988752 2356
Q ss_pred cccccccCCccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHH
Q 020963 180 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKK 259 (319)
Q Consensus 180 ~~~~~~~~~~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~ 259 (319)
.+|.+..++..+++.+++...+..++++|||+|++++|.|....+....+.||||||+|+|+.++.+ .+.|+++++|++
T Consensus 143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~-~~~~~~~~~l~~ 221 (281)
T PRK11493 143 GEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVR-EGELKTTDELDA 221 (281)
T ss_pred CcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcC-CCCcCCHHHHHH
Confidence 6777777788899999999888777789999999999999765554455789999999999999875 467899999999
Q ss_pred HHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccCC
Q 020963 260 RFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETSS 319 (319)
Q Consensus 260 ~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~~ 319 (319)
.|.+.|++++++||+||++|.||+.++++|+.+||+|+++|+|||.+|....++|++++.
T Consensus 222 ~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~~ 281 (281)
T PRK11493 222 IFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPAK 281 (281)
T ss_pred HHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCCC
Confidence 999999999999999999999999999999999999999999999999985469999874
No 4
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=8.3e-51 Score=401.50 Aligned_cols=266 Identities=27% Similarity=0.463 Sum_probs=236.0
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCC
Q 020963 20 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 99 (319)
Q Consensus 20 ~~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (319)
...+||++||.+++++++++||||| +..+|..||||||+|+|+..+........+++|+.++|++.+.++|
T Consensus 7 ~~~lIs~~eL~~~l~~~~vvIIDvR---------~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lG 77 (610)
T PRK09629 7 LSLVIEPNDLLERLDAPELILVDLT---------SSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELG 77 (610)
T ss_pred CCceecHHHHHHHhcCCCEEEEECC---------ChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcC
Confidence 4579999999999998889999998 6789999999999999987543333345668899999999999999
Q ss_pred CCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccCCCcchhhhhhhhHHHHHHHhcCcccCC
Q 020963 100 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGP 179 (319)
Q Consensus 100 i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (319)
++++++||+||..+...+++++|+|+.+||++|++|+||+.+|+.+|+|+++..+ ..+.
T Consensus 78 I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~---------------------~~~~ 136 (610)
T PRK09629 78 HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVP---------------------PVAG 136 (610)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCC---------------------CCCC
Confidence 9999999999988766799999999999999999999999999999999988642 2234
Q ss_pred cccccccCCccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHH
Q 020963 180 TTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKK 259 (319)
Q Consensus 180 ~~~~~~~~~~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~ 259 (319)
..|.....+...++.+++.+++++++++|||+|++++|.|.... ..+.||||||+|+|+..+++..+.|++++++++
T Consensus 137 ~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~---~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~ 213 (610)
T PRK09629 137 GPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVV---AAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPE 213 (610)
T ss_pred cceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccc---cccCCCCCCCeecCHHHhcCCCCCCCCHHHHHH
Confidence 55666667778999999999998878999999999999986532 237899999999999988887788999999999
Q ss_pred HHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccC
Q 020963 260 RFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318 (319)
Q Consensus 260 ~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~ 318 (319)
++.+.|++++++||+||++|.+|+.++++|+.+||+||++|+|||.+|....++|+++.
T Consensus 214 ~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~ 272 (610)
T PRK09629 214 ILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVP 272 (610)
T ss_pred HHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999877999874
No 5
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=100.00 E-value=1.6e-43 Score=309.53 Aligned_cols=270 Identities=46% Similarity=0.865 Sum_probs=244.9
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCC
Q 020963 20 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 99 (319)
Q Consensus 20 ~~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (319)
...++++.|+.+++.+..++|||+.|+++...|+...+|+.-|||||++++++.+....+..++++|..+.|++..+.+|
T Consensus 3 ~~~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 3 VDSIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cccccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 45789999999999998899999999999998988899999999999999999988888889999999999999999999
Q ss_pred CCCCCeEEEEcC--CCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccCCCcchhhhhhhhHHHHHHHhcCccc
Q 020963 100 LENKDGLVVYDG--KGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVV 177 (319)
Q Consensus 100 i~~~~~vvly~~--~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (319)
+++++.||||++ .|+..|+|++|+|+.+|+++|++|+||+..|++.|+|+.+.... + +.
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~--------------~----p~- 143 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVE--------------T----PY- 143 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccccc--------------C----CC-
Confidence 999999999988 78888999999999999999999999999999999999997631 0 00
Q ss_pred CCcccccccCCccccCHHHHHHH-hhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHH
Q 020963 178 GPTTFQTKFQPHLIWTLEQVKRN-IEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADE 256 (319)
Q Consensus 178 ~~~~~~~~~~~~~~is~~~l~~~-~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~ 256 (319)
.+..+...++...+++.+++..+ ...+++..||.|+.++|.|+.+++......||||||+|+|+.+++++++.++++++
T Consensus 144 ~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~ed 223 (286)
T KOG1529|consen 144 SPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAED 223 (286)
T ss_pred CCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHH
Confidence 23344455666677777877666 66678999999999999999999888889999999999999999999998888999
Q ss_pred HHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 257 LKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 257 l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
++.++...++..++|||+.|+.|..|+..+..|...| .++++|||||.+|..
T Consensus 224 l~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 224 LKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred HHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 9999999999999999999999999999999999999 789999999999995
No 6
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.90 E-value=4e-23 Score=168.23 Aligned_cols=119 Identities=37% Similarity=0.544 Sum_probs=101.8
Q ss_pred ccHHHHHHhcC----CCCeEEEEeecCCCCCCCCchhhhhh------------cCCcCceecCcccccccCCCCCCCCCC
Q 020963 24 VSVDWLHANLR----EPDLKVLDASWYMPDEQRNPFQEYQV------------AHIPGALFFDVDGVADRTTNLPHMLPS 87 (319)
Q Consensus 24 Is~~~l~~~l~----~~~~~iiDvR~~~~~~~r~~~~~~~~------------ghIpgAi~ip~~~l~~~~~~~~~~~~~ 87 (319)
||++||.++++ +++++|||+|+.+++. |+...+|.. ||||||+|+|+..+...+.....++|+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~-~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~ 79 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGT-REARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPS 79 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccC-cchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCC
Confidence 68999999998 4679999999654443 444478887 999999999988765555556678899
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEcCC--CcchhHHHHHHHHHhcCCceEEecCCHHHHH
Q 020963 88 EEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 143 (319)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~vvly~~~--g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~ 143 (319)
.++|++.+..+||+++++||+||.. ++..|++++|+|+.+|+++|++|+||+.+|+
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 9999999999999999999999974 4567999999999999999999999999996
No 7
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.90 E-value=3.9e-23 Score=163.86 Aligned_cols=118 Identities=51% Similarity=0.959 Sum_probs=103.2
Q ss_pred cCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 020963 192 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 271 (319)
Q Consensus 192 is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~ 271 (319)
++++++.+++++++++|||||+..+|.+....+...+..||||||+|+|+.++....+.|++.+++++.+...+++++++
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP 80 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence 46788888887667999999999999765443333335699999999999988776677889999999999999999999
Q ss_pred EEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 272 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 272 vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
||+||++|.+|..+++.|+.+|++++++|+||+.+|..
T Consensus 81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 99999999999999999999999999999999999973
No 8
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.89 E-value=1.2e-22 Score=165.31 Aligned_cols=118 Identities=36% Similarity=0.636 Sum_probs=98.7
Q ss_pred cCHHHHHHHhh----cCCcEEEeccCC--------CcccCCCCCCC-CCCCccccCCCcccCcccccCCCC----CCCCH
Q 020963 192 WTLEQVKRNIE----EGTYQLVDARSK--------ARFDGDAPEPR-KGIRSGHVPGSKCIPFPQMLDASQ----TLLPA 254 (319)
Q Consensus 192 is~~~l~~~~~----~~~~~liDvR~~--------~e~~g~~~~~~-~~~~~ghIpgA~~ip~~~l~~~~~----~~~~~ 254 (319)
||++||.++++ +++++|||+|.. ++|.|...++. ...+.||||||+|+|+.++.+..+ .+.+.
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 57889999987 467999999987 88977544321 112459999999999988765443 45677
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCC---cHHHHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 255 DELKKRFEQEGISLEKPVVTACGT---GVTACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~---G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
++|++++.+.||+++++||+||.+ |..|++++++|+.+|+++|++|+|||.+|..
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~~ 138 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWFH 138 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhhC
Confidence 899999999999999999999986 8999999999999999999999999999963
No 9
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.88 E-value=3.4e-23 Score=190.17 Aligned_cols=203 Identities=14% Similarity=0.119 Sum_probs=145.4
Q ss_pred ccccCCCCCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHH
Q 020963 12 YSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAF 91 (319)
Q Consensus 12 ~~~~~~~~~~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~ 91 (319)
+...+.+++.++-++++|.+.+.. ...++|+| +...|..+||+|++|+|...+. .+
T Consensus 4 ~~v~~~Y~f~~i~~~~~~~~~l~~-~~~~~d~r---------g~i~~a~egIngtis~~~~~~~--------------~~ 59 (314)
T PRK00142 4 YRVLLYYKYTPIEDPEAFRDEHLA-LCKSLGLK---------GRILVAEEGINGTVSGTIEQTE--------------AY 59 (314)
T ss_pred cEEEEEEccccCCCHHHHHHHHHH-HHHHcCCe---------eEEEEcCCCceEEEEecHHHHH--------------HH
Confidence 444556777888899999998876 57789999 7889999999999999974332 33
Q ss_pred HHHHHhCCCCCCCeEEEEcCCC-cchh----HHHHHHHHHhcCC-ceEEecCCHHHHHhCCCCcccCCCcchhhhhhhhH
Q 020963 92 AAAVSALGLENKDGLVVYDGKG-IFSA----ARVWWMFRVFGHD-RVWVLDGGLPRWRASGYDVESSASGDAILKASAAS 165 (319)
Q Consensus 92 ~~~~~~~~i~~~~~vvly~~~g-~~~a----~~~~~~l~~~G~~-~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~ 165 (319)
..++... ....++++....+ .... .++...|..+|++ ++.-+. .
T Consensus 60 ~~~l~~~--~~~~~i~l~~~~~~~~~f~~l~~~~~~eLv~~G~d~~v~~~~-------------~--------------- 109 (314)
T PRK00142 60 MAWLKAD--PRFADIRFKISEDDGHAFPRLSVKVRKEIVALGLDDDIDPLE-------------N--------------- 109 (314)
T ss_pred HHHHhhC--cCCCCceEEeccccCCCcccceeeeeeeeeecCCCCCCCccc-------------c---------------
Confidence 4444332 1234444432221 1111 3444455556653 332111 0
Q ss_pred HHHHHHhcCcccCCcccccccCCccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCccccc
Q 020963 166 EAIEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQML 245 (319)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~ 245 (319)
....++++++.+.+.+++++|||||++.|| ..||||||+|+|+.++.
T Consensus 110 ----------------------~~~~is~~el~~~l~~~~~vlIDVR~~~E~-----------~~GhI~GAi~ip~~~~~ 156 (314)
T PRK00142 110 ----------------------VGTYLKPKEVNELLDDPDVVFIDMRNDYEY-----------EIGHFENAIEPDIETFR 156 (314)
T ss_pred ----------------------CCcccCHHHHHHHhcCCCeEEEECCCHHHH-----------hcCcCCCCEeCCHHHhh
Confidence 112678889999888888999999999999 68999999999998764
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCC
Q 020963 246 DASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 246 ~~~~~~~~~~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~ 310 (319)
+. .+.+. +..++.++++||+||.+|.||..++..|+..||++|+.|+||+.+|...
T Consensus 157 ~~------~~~l~---~~~~~~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 157 EF------PPWVE---ENLDPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred hh------HHHHH---HhcCCCCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 21 11121 2345678999999999999999999999999999999999999999875
No 10
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.87 E-value=1.2e-21 Score=156.31 Aligned_cols=122 Identities=54% Similarity=1.039 Sum_probs=100.7
Q ss_pred cccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCC
Q 020963 23 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 102 (319)
Q Consensus 23 ~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 102 (319)
+|++++|.+++.+++++|||+|..... .....+|..||||||+|+|+..+.........++++.++|++.+..+++++
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~--~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPD--RDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISN 78 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCC--CchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 589999999998878999999921111 001278999999999999988765432234567889999999999999999
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCC
Q 020963 103 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 146 (319)
Q Consensus 103 ~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 146 (319)
+++|||||+.++.+++++++.|+.+||++|++|+||+.+|..+|
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 99999999886567999999999999999999999999998765
No 11
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.87 E-value=1.3e-21 Score=163.50 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=102.6
Q ss_pred ccccccCccc--cccCCCCCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhh---------cCCcCceecCc
Q 020963 3 SLAAGRRADY--STLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV---------AHIPGALFFDV 71 (319)
Q Consensus 3 ~~~~~~~~~~--~~~~~~~~~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~---------ghIpgAi~ip~ 71 (319)
+++.++++.| +..+.......|+++|+.+++++++++|||||..... ..+|.. +|||||+|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~-----~~e~~~G~~~~~~~~~HIPGAv~ip~ 89 (162)
T TIGR03865 15 EPEGYRTDHYRAPVPATLKGARVLDTEAAQALLARGPVALIDVYPRPPK-----PKNLLEGTVWRDEPRLNIPGSLWLPN 89 (162)
T ss_pred CCcccccccccCCCCcccCCccccCHHHHHHHHhCCCcEEEECCCCccc-----cccccccceeccccCCCCCCcEEecc
Confidence 4567777777 4445566689999999999998878999999921100 013333 59999999996
Q ss_pred ccccccCCCCCCCCCCHHHHHHHHHhCCC-CCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCc
Q 020963 72 DGVADRTTNLPHMLPSEEAFAAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 149 (319)
Q Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~ 149 (319)
..+.... -+..+.|.+.+...++ +++++||+||.+|+.++.++++.|+.+||++|++|+||+.+|+.+|+|+
T Consensus 90 ~~~~~l~------~~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 90 TGYGNLA------PAWQAYFRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred cCCCCCC------CchhHHHHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 4322211 1233457777766654 7899999999988767889999999999999999999999999999985
No 12
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.87 E-value=9.1e-22 Score=157.00 Aligned_cols=109 Identities=24% Similarity=0.402 Sum_probs=97.7
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCC-------CcccCCCCCCCCCCCccccCCCcccCcccccC----CCCCCCCHHHHHH
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSK-------ARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLD----ASQTLLPADELKK 259 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~-------~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~----~~~~~~~~~~l~~ 259 (319)
+++++++.+.+.+++++|||+|++ .+| ..||||||+|+|+.++.. ..+.+.+.+++++
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~-----------~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~ 69 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPDRDGRKEY-----------LEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAE 69 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCCCchhhHH-----------hhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHH
Confidence 367889999988777899999999 556 679999999999988764 2457889999999
Q ss_pred HHHHcCCCCCCCEEEecCC-cHHHHHHHHHHHhcCCCCceeeeCcHHHHhCC
Q 020963 260 RFEQEGISLEKPVVTACGT-GVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 260 ~l~~~~~~~~~~vivyC~~-G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~ 310 (319)
.+...+++++++|||||++ |.+|+.+++.|+.+||++|++|+|||.+|...
T Consensus 70 ~~~~~~~~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~ 121 (122)
T cd01448 70 LLGSLGISNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAE 121 (122)
T ss_pred HHHHcCCCCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhC
Confidence 9999999999999999999 59999999999999999999999999999876
No 13
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.85 E-value=1.6e-21 Score=151.59 Aligned_cols=104 Identities=30% Similarity=0.534 Sum_probs=91.6
Q ss_pred CHHHHHHHhh-cCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 020963 193 TLEQVKRNIE-EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 271 (319)
Q Consensus 193 s~~~l~~~~~-~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~ 271 (319)
|++++.+.++ .++++|||+|++.+| ..||||||+|+|+.++.+. .+.++++|++.+...+++++++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~e~-----------~~ghIpgA~~ip~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 68 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPEEL-----------KTGKIPGAINIPLSSLPDA--LALSEEEFEKKYGFPKPSKDKE 68 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHHHH-----------hcCcCCCcEEechHHhhhh--hCCCHHHHHHHhcccCCCCCCe
Confidence 4677888877 667999999999999 6899999999999886542 3456788999998888899999
Q ss_pred EEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 272 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 272 vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
||+||.+|.+|..+++.|..+||++|++|+||+.+|..
T Consensus 69 ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 69 LIFYCKAGVRSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred EEEECCCcHHHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 99999999999999999999999999999999999963
No 14
>PLN02160 thiosulfate sulfurtransferase
Probab=99.85 E-value=4.8e-21 Score=155.60 Aligned_cols=111 Identities=18% Similarity=0.301 Sum_probs=93.6
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCC--cccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGS--KCIPFPQMLDASQTLLPADELKKRFEQEGISL 268 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA--~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 268 (319)
.++++++.+.++. +..|||||++.|| ..|||||| +|+|+..+. ....+++.+.+..+.. .+++
T Consensus 16 ~i~~~e~~~~~~~-~~~lIDVR~~~E~-----------~~ghIpgA~~iniP~~~~~-~~~~l~~~~~~~~~~~--~~~~ 80 (136)
T PLN02160 16 SVDVSQAKTLLQS-GHQYLDVRTQDEF-----------RRGHCEAAKIVNIPYMLNT-PQGRVKNQEFLEQVSS--LLNP 80 (136)
T ss_pred EeCHHHHHHHHhC-CCEEEECCCHHHH-----------hcCCCCCcceecccchhcC-cccccCCHHHHHHHHh--ccCC
Confidence 6788999888875 4689999999999 67999999 899986653 3445666555554433 4678
Q ss_pred CCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCcc
Q 020963 269 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVET 317 (319)
Q Consensus 269 ~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~ 317 (319)
+++||+||++|.||..++..|...||.+|++|.|||.+|...+ +|+.+
T Consensus 81 ~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g-~p~~~ 128 (136)
T PLN02160 81 ADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHS-FPINQ 128 (136)
T ss_pred CCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCC-CCccc
Confidence 9999999999999999999999999999999999999999995 99986
No 15
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.85 E-value=4.1e-21 Score=174.90 Aligned_cols=127 Identities=17% Similarity=0.282 Sum_probs=104.8
Q ss_pred cccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCC----CCCCCHHHHHHHHHHcC
Q 020963 190 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLPADELKKRFEQEG 265 (319)
Q Consensus 190 ~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~----~~~~~~~~l~~~l~~~~ 265 (319)
.+|+++||.+++++++++|||+|+..++.|.... ...++.||||||+|+|+..+.... ..+.++++|+++++++|
T Consensus 5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~-~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (281)
T PRK11493 5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDV-AAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELG 83 (281)
T ss_pred cccCHHHHHHhcCCCCeEEEEeeCCCCCccccch-HHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 5899999999999888999999985554432100 112268999999999998765533 24567899999999999
Q ss_pred CCCCCCEEEecCCcH-HHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccC
Q 020963 266 ISLEKPVVTACGTGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318 (319)
Q Consensus 266 ~~~~~~vivyC~~G~-ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~ 318 (319)
++++++||+||.+|. .|+++++.|+.+|+++|++|+||+.+|..++ +|++++
T Consensus 84 i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g-~p~~~~ 136 (281)
T PRK11493 84 VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDD-LLLEEG 136 (281)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcC-CCccCC
Confidence 999999999999876 5778899999999999999999999999995 998875
No 16
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.6e-21 Score=148.87 Aligned_cols=114 Identities=26% Similarity=0.407 Sum_probs=98.2
Q ss_pred ccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 020963 189 HLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 268 (319)
Q Consensus 189 ~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 268 (319)
...++.+++..+++.+++++||||+++|| +.||||.++|||+...... +.++ ..+|.+.+.....+.
T Consensus 22 ~~sv~~~qvk~L~~~~~~~llDVRepeEf-----------k~gh~~~siNiPy~~~~~~-~~l~-~~eF~kqvg~~kp~~ 88 (136)
T KOG1530|consen 22 PQSVSVEQVKNLLQHPDVVLLDVREPEEF-----------KQGHIPASINIPYMSRPGA-GALK-NPEFLKQVGSSKPPH 88 (136)
T ss_pred cEEEEHHHHHHHhcCCCEEEEeecCHHHh-----------hccCCcceEeccccccccc-cccC-CHHHHHHhcccCCCC
Confidence 45889999999999888999999999999 8999999999999554332 2333 466777777777778
Q ss_pred CCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCc
Q 020963 269 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVE 316 (319)
Q Consensus 269 ~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~ 316 (319)
++.|||+|.+|.|+..|...|..+||+||.+|.|||.+|.+.+ .|..
T Consensus 89 d~eiIf~C~SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~-~~~~ 135 (136)
T KOG1530|consen 89 DKEIIFGCASGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKG-GPKK 135 (136)
T ss_pred CCcEEEEeccCcchhHHHHHHHHcCcccccccCccHHHHHHcc-CCCC
Confidence 8899999999999999999999999999999999999999996 6653
No 17
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.84 E-value=9.4e-21 Score=148.20 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=84.8
Q ss_pred cccCHHHHHHHhhcC-CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 020963 190 LIWTLEQVKRNIEEG-TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 268 (319)
Q Consensus 190 ~~is~~~l~~~~~~~-~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 268 (319)
..++++++.+.+..+ +.+|||||++.|| ..||||||+|+|+.++ ...+.....++
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR~~~e~-----------~~ghIpgainip~~~l-------------~~~~~~l~~~~ 65 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGRRFDEY-----------RKMTIPGSVSCPGAEL-------------VLRVGELAPDP 65 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCCCHHHH-----------hcCcCCCceeCCHHHH-------------HHHHHhcCCCC
Confidence 478899999988755 5789999999999 6899999999999554 34455556677
Q ss_pred CCCEEEecCCcHHHHHHHHHHHhcCCCC-ceeeeCcHHHHhCCC
Q 020963 269 EKPVVTACGTGVTACILALGLNRLGKHD-VAVYDGSWTEWGAQP 311 (319)
Q Consensus 269 ~~~vivyC~~G~ra~~~~~~L~~~G~~~-v~~~~Gg~~~W~~~~ 311 (319)
+++|||||++|.||..+++.|+.+||+| ++.++||+.+|..+|
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 8999999999999999999999999988 999999999999763
No 18
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.83 E-value=2.3e-20 Score=156.01 Aligned_cols=121 Identities=18% Similarity=0.245 Sum_probs=92.1
Q ss_pred CCccccCHHHHHHHhhcCCcEEEeccCCC----ccc-CCCCCCCCCCCccccCCCcccCcccccCCCCCCCC--HHHHHH
Q 020963 187 QPHLIWTLEQVKRNIEEGTYQLVDARSKA----RFD-GDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLP--ADELKK 259 (319)
Q Consensus 187 ~~~~~is~~~l~~~~~~~~~~liDvR~~~----e~~-g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~--~~~l~~ 259 (319)
.....|+++|+.+++++++.+|||||+.. +|. |..... ...+|||||+|+|+..+. .+.+ .+.+.+
T Consensus 33 ~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~---~~~~HIPGAv~ip~~~~~----~l~~~~~~~~~~ 105 (162)
T TIGR03865 33 KGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRD---EPRLNIPGSLWLPNTGYG----NLAPAWQAYFRR 105 (162)
T ss_pred CCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceecc---ccCCCCCCcEEecccCCC----CCCCchhHHHHH
Confidence 34568999999999988889999999876 331 210000 023699999999974321 2222 244667
Q ss_pred HHHHcCC-CCCCCEEEecCCcH-HHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCC
Q 020963 260 RFEQEGI-SLEKPVVTACGTGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 315 (319)
Q Consensus 260 ~l~~~~~-~~~~~vivyC~~G~-ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~ 315 (319)
.+.+.+. +++++||+||++|. +|..+++.|+.+||.+|++|+||+.+|..+| +|+
T Consensus 106 ~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG-~Pv 162 (162)
T TIGR03865 106 GLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAG-LPL 162 (162)
T ss_pred HHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcC-CCC
Confidence 7766554 79999999999996 8999999999999999999999999999995 886
No 19
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.83 E-value=1.7e-20 Score=144.68 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=82.8
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 270 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~ 270 (319)
.|+++++.+.++.++++|||||++.|| ..||||||+|+|+..+... ...+.+.+ .+++++
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~e~-----------~~ghi~gA~~ip~~~~~~~------~~~~~~~~---~~~~~~ 62 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDYEY-----------DIGHFKGAVNPDVDTFREF------PFWLDENL---DLLKGK 62 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChhhh-----------hcCEeccccCCCcccHhHh------HHHHHhhh---hhcCCC
Confidence 678899999888778999999999999 6899999999999775321 11222222 247899
Q ss_pred CEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 271 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 271 ~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
+|||||++|.||..++..|..+||++|++++||+.+|..
T Consensus 63 ~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 63 KVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred EEEEECCCchhHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 999999999999999999999999999999999999963
No 20
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.83 E-value=3.1e-20 Score=144.26 Aligned_cols=104 Identities=21% Similarity=0.308 Sum_probs=90.3
Q ss_pred cHHHHHHhcC-CCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCC
Q 020963 25 SVDWLHANLR-EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 103 (319)
Q Consensus 25 s~~~l~~~l~-~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 103 (319)
|++++.++++ .++++|||+| +..+|..||||||+|+|+..+.. ....+.+.|.+.++..+++++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 66 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVR---------EPEELKTGKIPGAINIPLSSLPD------ALALSEEEFEKKYGFPKPSKD 66 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECC---------CHHHHhcCcCCCcEEechHHhhh------hhCCCHHHHHHHhcccCCCCC
Confidence 6789999988 6679999999 77899999999999999877532 123567789999998899999
Q ss_pred CeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHh
Q 020963 104 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 144 (319)
Q Consensus 104 ~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 144 (319)
++||+||..|. ++.++++.|+.+||++|++|+||+.+|.+
T Consensus 67 ~~ivv~c~~g~-~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 67 KELIFYCKAGV-RSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CeEEEECCCcH-HHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 99999998876 48899999999999999999999999963
No 21
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.82 E-value=3.6e-20 Score=146.78 Aligned_cols=107 Identities=27% Similarity=0.490 Sum_probs=92.6
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhh-----------cCCcCceecCcccccccCCCCCCCCCCHHHHH
Q 020963 24 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV-----------AHIPGALFFDVDGVADRTTNLPHMLPSEEAFA 92 (319)
Q Consensus 24 Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~-----------ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~ 92 (319)
||+++|.+++++++++||||| +..+|.. ||||||+|+|+..+.... ..+++.+.|.
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR---------~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~----~~~~~~~~~~ 67 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDAR---------SPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED----GTFKSPEELR 67 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCC---------CHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC----CCcCCHHHHH
Confidence 588999999987679999999 5667765 999999999998765422 4567889999
Q ss_pred HHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHh
Q 020963 93 AAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 144 (319)
Q Consensus 93 ~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 144 (319)
+.+..++++++++||+||..|. ++.++++.|+.+||++|++|+||+.+|.+
T Consensus 68 ~~~~~~~~~~~~~iv~yc~~g~-~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 68 ALFAALGITPDKPVIVYCGSGV-TACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHHHHcCCCCCCCEEEECCcHH-HHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 9999999999999999998754 58999999999999999999999999963
No 22
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.82 E-value=2.8e-20 Score=142.81 Aligned_cols=97 Identities=20% Similarity=0.363 Sum_probs=84.9
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 270 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~ 270 (319)
.++++++.+.++++ .+|||+|++++| ..||||||+|+|+..+.... ..+++++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~e~-----------~~~hi~ga~~ip~~~~~~~~---------------~~~~~~~ 55 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPDEY-----------LRERIPGARLVPLSQLESEG---------------LPLVGAN 55 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHHHH-----------HhCcCCCCEECChhHhcccc---------------cCCCCCC
Confidence 57889999988765 899999999999 68999999999998764321 1467899
Q ss_pred CEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCC
Q 020963 271 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 315 (319)
Q Consensus 271 ~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~ 315 (319)
+||+||.+|.+|..++..|..+||.++++++||+.+|...+ +|+
T Consensus 56 ~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~-~~~ 99 (99)
T cd01527 56 AIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWKAAG-LPV 99 (99)
T ss_pred cEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHHHHHHCc-CCC
Confidence 99999999999999999999999999999999999999985 875
No 23
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.82 E-value=9.2e-20 Score=142.56 Aligned_cols=99 Identities=26% Similarity=0.268 Sum_probs=84.7
Q ss_pred CCcccHHHHHHhcCCC-CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCC
Q 020963 21 EPVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 99 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~-~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (319)
.+.|++++|.++++++ +++||||| +..+|..||||||+|+|+.. |...+..++
T Consensus 9 ~~~i~~~~l~~~~~~~~~~~liDvR---------~~~e~~~ghIpgainip~~~-----------------l~~~~~~l~ 62 (109)
T cd01533 9 TPSVSADELAALQARGAPLVVLDGR---------RFDEYRKMTIPGSVSCPGAE-----------------LVLRVGELA 62 (109)
T ss_pred CCcCCHHHHHHHHhcCCCcEEEeCC---------CHHHHhcCcCCCceeCCHHH-----------------HHHHHHhcC
Confidence 4689999999998765 58999999 78999999999999999853 334556666
Q ss_pred CCCCCeEEEEcCCCcchhHHHHHHHHHhcCCc-eEEecCCHHHHHhCC
Q 020963 100 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLPRWRASG 146 (319)
Q Consensus 100 i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~-v~~l~GG~~~W~~~g 146 (319)
.+++++||+||..|.+ +..+++.|+.+||++ |+.|+||+.+|..+|
T Consensus 63 ~~~~~~ivv~C~~G~r-s~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 63 PDPRTPIVVNCAGRTR-SIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCCCeEEEECCCCch-HHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 6778999999987765 788999999999988 999999999999875
No 24
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.82 E-value=4.9e-20 Score=170.52 Aligned_cols=119 Identities=22% Similarity=0.351 Sum_probs=103.1
Q ss_pred CccccCHHHHHHHhhcCCcEEEeccC---------CCcccCCCCCCCCCCCccccCCCcccCcccccCCC----CCCCCH
Q 020963 188 PHLIWTLEQVKRNIEEGTYQLVDARS---------KARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLPA 254 (319)
Q Consensus 188 ~~~~is~~~l~~~~~~~~~~liDvR~---------~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~----~~~~~~ 254 (319)
+..+|+++||.+++++++++|||+|. ..+| ..||||||+|+|+.++.+.. ..+.+.
T Consensus 20 ~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y-----------~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~ 88 (320)
T PLN02723 20 NEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEY-----------QVAHIPGALFFDLDGISDRTTDLPHMLPSE 88 (320)
T ss_pred CCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHH-----------HhccCCCCeecCHHHhcCCCCCcCCCCCCH
Confidence 45699999999999888899999972 2456 68999999999998766532 346788
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcH-HHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccC
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~-ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~ 318 (319)
++|+++|+++|++++++|||||..|. .++++++.|+.+|+++|++|+||+.+|..+| +|++++
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G-~pv~~~ 152 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASG-YDVESS 152 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcC-CCcccC
Confidence 99999999999999999999998775 6778899999999999999999999999995 999864
No 25
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.81 E-value=9.5e-20 Score=142.24 Aligned_cols=102 Identities=25% Similarity=0.339 Sum_probs=89.3
Q ss_pred cccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCC
Q 020963 190 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 269 (319)
Q Consensus 190 ~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 269 (319)
..++++++.+.++.++..|||+|++.+| ..||||||+|+|+.. |...+. .++++
T Consensus 5 ~~is~~el~~~l~~~~~~ivDvR~~~e~-----------~~ghi~gA~~ip~~~-------------l~~~~~--~~~~~ 58 (108)
T PRK00162 5 ECINVEQAHQKLQEGGAVLVDIRDPQSF-----------AMGHAPGAFHLTNDS-------------LGAFMR--QADFD 58 (108)
T ss_pred cccCHHHHHHHHHcCCCEEEEcCCHHHH-----------hcCCCCCCeECCHHH-------------HHHHHH--hcCCC
Confidence 3688999999887777899999999999 689999999999844 444555 46789
Q ss_pred CCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccC
Q 020963 270 KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318 (319)
Q Consensus 270 ~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~ 318 (319)
++|++||.+|.+|..++..|+..||.|+++++||+.+|...+ +|++..
T Consensus 59 ~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~-~~~~~~ 106 (108)
T PRK00162 59 TPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRRTF-PAEVAS 106 (108)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHHHHHhcC-CCccCC
Confidence 999999999999999999999999999999999999999995 998863
No 26
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.81 E-value=6.9e-20 Score=181.85 Aligned_cols=117 Identities=22% Similarity=0.306 Sum_probs=104.9
Q ss_pred cccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCC----CCCCCCHHHHHHHHHHcC
Q 020963 190 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA----SQTLLPADELKKRFEQEG 265 (319)
Q Consensus 190 ~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~----~~~~~~~~~l~~~l~~~~ 265 (319)
.+|+++||.+++++++++|||+|+.++| ..||||||+|+|+..+... .+.|.+.++|++.+.++|
T Consensus 9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY-----------~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lG 77 (610)
T PRK09629 9 LVIEPNDLLERLDAPELILVDLTSSARY-----------EAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELG 77 (610)
T ss_pred ceecHHHHHHHhcCCCEEEEECCChHHH-----------HhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcC
Confidence 4899999999999888999999999999 6899999999998764321 256778899999999999
Q ss_pred CCCCCCEEEecCCc-HHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccC
Q 020963 266 ISLEKPVVTACGTG-VTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318 (319)
Q Consensus 266 ~~~~~~vivyC~~G-~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~ 318 (319)
++++++|||||++| .+|++++|.|+.+|+++|++|+||+.+|..++ +|++++
T Consensus 78 I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag-~p~~~~ 130 (610)
T PRK09629 78 HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQA-LPLSTD 130 (610)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcC-CccccC
Confidence 99999999999976 68999999999999999999999999999995 998764
No 27
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.81 E-value=3.4e-19 Score=163.17 Aligned_cols=193 Identities=16% Similarity=0.234 Sum_probs=127.3
Q ss_pred CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCC--------------HHHHHHHHHhC--CC
Q 020963 37 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPS--------------EEAFAAAVSAL--GL 100 (319)
Q Consensus 37 ~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~--~i 100 (319)
..+||||| .+.+|..||||||+|+|+....... ....+.+. ...+...+... -.
T Consensus 2 ~~~liDVR---------sp~Ef~~ghipgAiniPl~~~~er~-~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~ 71 (311)
T TIGR03167 2 FDPLIDVR---------SPAEFAEGHLPGAINLPLLNDEERA-EVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFA 71 (311)
T ss_pred CCEEEECC---------CHHHHhcCCCcCCEecccccchhhh-hhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhc
Confidence 46899999 7899999999999999985321100 00000000 00122222221 12
Q ss_pred CCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccCCCcchhhhhhhhHHHHHHHhcCcccCCc
Q 020963 101 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVVGPT 180 (319)
Q Consensus 101 ~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (319)
+++..||+||+.++.+|..+++.|+.+|| +|.+|+||+.+|...+.+.....+ .+.
T Consensus 72 ~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~-----------------------~~~ 127 (311)
T TIGR03167 72 DGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELP-----------------------QPF 127 (311)
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccC-----------------------CCC
Confidence 34445999997655569999999999999 699999999999999886665421 111
Q ss_pred ccccccCCccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccC-CCcccCcccccCCCCCCCCHHHHHH
Q 020963 181 TFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVP-GSKCIPFPQMLDASQTLLPADELKK 259 (319)
Q Consensus 181 ~~~~~~~~~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIp-gA~~ip~~~l~~~~~~~~~~~~l~~ 259 (319)
.+.. +.+...+...++++.+...+++|||+|+..+|.|. ..|||| +. -|....+ ...|..
T Consensus 128 ~~~v-l~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs--------~fG~~~~~~--qpsq~~f--------e~~L~~ 188 (311)
T TIGR03167 128 PLIV-LGGMTGSGKTELLHALANAGAQVLDLEGLANHRGS--------SFGALGLGP--QPSQKRF--------ENALAE 188 (311)
T ss_pred ceec-cCCCCCcCHHHHHHHHhcCCCeEEECCchHHhcCc--------ccCCCCCCC--CCchHHH--------HHHHHH
Confidence 2222 33456788999999998888999999999999765 358888 42 2332222 134444
Q ss_pred HHHHcCCCCCCCEEEecCCcHHHHH
Q 020963 260 RFEQEGISLEKPVVTACGTGVTACI 284 (319)
Q Consensus 260 ~l~~~~~~~~~~vivyC~~G~ra~~ 284 (319)
.|. .+++.++|++-|.+..-+.+
T Consensus 189 ~l~--~~~~~~~i~~e~es~~ig~~ 211 (311)
T TIGR03167 189 ALR--RLDPGRPIFVEDESRRIGRV 211 (311)
T ss_pred HHH--hCCCCceEEEEeCchhhccc
Confidence 454 56778899999987654443
No 28
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.81 E-value=6.7e-20 Score=147.54 Aligned_cols=105 Identities=24% Similarity=0.390 Sum_probs=83.1
Q ss_pred cCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCC---------CCC--------CCCH
Q 020963 192 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA---------SQT--------LLPA 254 (319)
Q Consensus 192 is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~---------~~~--------~~~~ 254 (319)
||++|+.++++ .+.+|||||++.|| ..||||||+|||+..+... .+. ....
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR~~~e~-----------~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVRSPKEF-----------FEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVS 68 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECCCHHHh-----------ccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh
Confidence 57889998887 57899999999999 6899999999999654321 110 0011
Q ss_pred HHHHHHHHH---cCCCCCCCEEEecC-CcHHHHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 255 DELKKRFEQ---EGISLEKPVVTACG-TGVTACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 255 ~~l~~~l~~---~~~~~~~~vivyC~-~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
..++++++. .+++++++||+||+ +|.||..+++.|+.+|| ++++++||+.+|..
T Consensus 69 ~~~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 69 GKLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hhHHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 234444443 48999999999997 68999999999999999 59999999999975
No 29
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.81 E-value=1.1e-19 Score=140.11 Aligned_cols=99 Identities=22% Similarity=0.319 Sum_probs=80.1
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCC
Q 020963 22 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 101 (319)
Q Consensus 22 ~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (319)
..|+++++.+++++++++||||| +..+|..||||||+|+|+..+... .+.+.+.+ ..+
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR---------~~~e~~~ghi~gA~~ip~~~~~~~----------~~~~~~~~---~~~ 59 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVR---------NDYEYDIGHFKGAVNPDVDTFREF----------PFWLDENL---DLL 59 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcC---------ChhhhhcCEeccccCCCcccHhHh----------HHHHHhhh---hhc
Confidence 47899999999987789999999 778999999999999998765321 11122111 236
Q ss_pred CCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHH
Q 020963 102 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 143 (319)
Q Consensus 102 ~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~ 143 (319)
++++||+||..|.+ +..+++.|+.+||++|++|+||+.+|.
T Consensus 60 ~~~~ivvyC~~G~r-s~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 60 KGKKVLMYCTGGIR-CEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred CCCEEEEECCCchh-HHHHHHHHHHhCCcceeeechhHHHHh
Confidence 88999999988765 677788899999999999999999996
No 30
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.80 E-value=8.4e-20 Score=145.75 Aligned_cols=105 Identities=20% Similarity=0.292 Sum_probs=87.8
Q ss_pred cccCHHHHHHHhhc-CCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHH-HHHHcCCC
Q 020963 190 LIWTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKK-RFEQEGIS 267 (319)
Q Consensus 190 ~~is~~~l~~~~~~-~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~-~l~~~~~~ 267 (319)
..|+++++.+.++. .+++|||+|++.|| ..||||||+|||+..+.+.... +.. ++...+++
T Consensus 8 ~~is~~el~~~~~~~~~~~ivDvR~~~e~-----------~~~hIpgai~ip~~~~~~~~~~------~~~~~~~~~~~~ 70 (122)
T cd01526 8 ERVSVKDYKNILQAGKKHVLLDVRPKVHF-----------EICRLPEAINIPLSELLSKAAE------LKSLQELPLDND 70 (122)
T ss_pred cccCHHHHHHHHhCCCCeEEEEcCCHHHh-----------hcccCCCCeEccHHHHhhhhhh------hhhhhhcccccC
Confidence 47889999988876 57889999999999 6899999999999886543221 111 23344678
Q ss_pred CCCCEEEecCCcHHHHHHHHHHHhcCC-CCceeeeCcHHHHhCCC
Q 020963 268 LEKPVVTACGTGVTACILALGLNRLGK-HDVAVYDGSWTEWGAQP 311 (319)
Q Consensus 268 ~~~~vivyC~~G~ra~~~~~~L~~~G~-~~v~~~~Gg~~~W~~~~ 311 (319)
++++||+||++|.||..++..|+.+|| .++++|+||+.+|..+.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~ 115 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWADKV 115 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHHHHHHh
Confidence 999999999999999999999999999 78999999999999875
No 31
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.80 E-value=3.2e-19 Score=143.58 Aligned_cols=110 Identities=22% Similarity=0.351 Sum_probs=82.0
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCC-------C-------CCCCC--CC
Q 020963 24 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT-------N-------LPHML--PS 87 (319)
Q Consensus 24 Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~-------~-------~~~~~--~~ 87 (319)
||++||.++++ ++++||||| ...+|..||||||+|+|+..+..... . ++..+ +.
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR---------~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVR---------SPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGK 70 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECC---------CHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhh
Confidence 78999999998 478999999 78999999999999999864321100 0 00001 11
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHh
Q 020963 88 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 144 (319)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 144 (319)
.+++.+.+...+++++++||+||..++.++.+++|+|+.+|| +|++|+||+.+|+.
T Consensus 71 ~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 71 LKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 123333333358999999999997555569999999999999 69999999999974
No 32
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.79 E-value=3.3e-19 Score=135.74 Aligned_cols=98 Identities=33% Similarity=0.585 Sum_probs=84.7
Q ss_pred CCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEecCCcHHHH
Q 020963 204 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTAC 283 (319)
Q Consensus 204 ~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~vivyC~~G~ra~ 283 (319)
++++|||+|+..+| ..||||||+|+|+..+......+.. ..+.+.+...+++++++||+||.+|.+|.
T Consensus 3 ~~~~ivDvR~~~e~-----------~~~hi~ga~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iv~~c~~g~~a~ 70 (100)
T smart00450 3 EKVVLLDVRSPEEY-----------EGGHIPGAVNIPLSELLDRRGELDI-LEFEELLKRLGLDKDKPVVVYCRSGNRSA 70 (100)
T ss_pred CCEEEEECCCHHHh-----------ccCCCCCceeCCHHHhccCCCCcCH-HHHHHHHHHcCCCCCCeEEEEeCCCcHHH
Confidence 46899999999999 6899999999999887655433322 36777777789999999999999999999
Q ss_pred HHHHHHHhcCCCCceeeeCcHHHHhCCCCCC
Q 020963 284 ILALGLNRLGKHDVAVYDGSWTEWGAQPDTP 314 (319)
Q Consensus 284 ~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p 314 (319)
.+++.|+.+|++++++|+||+.+|...+ .|
T Consensus 71 ~~~~~l~~~G~~~v~~l~GG~~~w~~~~-~~ 100 (100)
T smart00450 71 KAAWLLRELGFKNVYLLDGGYKEWSAAG-PP 100 (100)
T ss_pred HHHHHHHHcCCCceEEecCCHHHHHhcC-CC
Confidence 9999999999999999999999999985 44
No 33
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.79 E-value=6.3e-19 Score=136.70 Aligned_cols=102 Identities=22% Similarity=0.265 Sum_probs=79.4
Q ss_pred ccHHHHHHhcCCC--CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCC
Q 020963 24 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 101 (319)
Q Consensus 24 Is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (319)
||++||.++++++ +++||||| +..+|..||||||+|+|+..+....... ..++..+.|.+.
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR---------~~~e~~~ghIpgA~~ip~~~~~~~~~~~-~~~~~~~~~~~~------- 63 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIR---------SSPDFRRGHIEGSINIPFSSVFLKEGEL-EQLPTVPRLENY------- 63 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECC---------CHHHHhCCccCCCEeCCHHHhccccccc-ccccchHHHHhh-------
Confidence 7899999999763 68999999 6789999999999999987653221111 123333334322
Q ss_pred CCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHH
Q 020963 102 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 143 (319)
Q Consensus 102 ~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~ 143 (319)
.+++||+||..|.+ +..+++.|+.+||++|++|+||+.+|+
T Consensus 64 ~~~~vv~~c~~g~~-s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 64 KGKIIVIVSHSHKH-AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred cCCeEEEEeCCCcc-HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 46889999987765 788899999999999999999999996
No 34
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.79 E-value=1.8e-19 Score=139.12 Aligned_cols=102 Identities=21% Similarity=0.394 Sum_probs=81.5
Q ss_pred cCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 020963 192 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 271 (319)
Q Consensus 192 is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~ 271 (319)
++++++.+.+++++.+|||+|++.+|. ..||||||+|+|+..+..... .+ ..+...+++++++
T Consensus 1 is~~el~~~~~~~~~~iiDvR~~~~~~----------~~ghIpga~~ip~~~~~~~~~----~~---~~~~~~~~~~~~~ 63 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVRDPRELE----------RTGMIPGAFHAPRGMLEFWAD----PD---SPYHKPAFAEDKP 63 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECCCHHHHH----------hcCCCCCcEEcccchhhhhcC----cc---ccccccCCCCCCe
Confidence 467888888876778999999998873 469999999999866531100 00 0111225789999
Q ss_pred EEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCC
Q 020963 272 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 272 vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~ 310 (319)
|||||.+|.+|..+++.|+.+|++++++|+||+.+|...
T Consensus 64 ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~ 102 (103)
T cd01447 64 FVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWKEA 102 (103)
T ss_pred EEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHHHHhhc
Confidence 999999999999999999999999999999999999865
No 35
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.79 E-value=3.4e-19 Score=135.81 Aligned_cols=93 Identities=26% Similarity=0.294 Sum_probs=76.0
Q ss_pred cCHHHHHHHhhcC--CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCC
Q 020963 192 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 269 (319)
Q Consensus 192 is~~~l~~~~~~~--~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 269 (319)
||++++.+.+..+ +++|||||++.|| ..||||||+|+|+..+... .......++
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR~~~e~-----------~~ghipga~~ip~~~l~~~-------------~~~~~~~~~ 56 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVRTPEEY-----------EAGHLPGFRHTPGGQLVQE-------------TDHFAPVRG 56 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECCCHHHH-----------HhCCCCCcEeCCHHHHHHH-------------HHHhcccCC
Confidence 4677888887654 5889999999999 6899999999998665321 111112357
Q ss_pred CCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 270 KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 270 ~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
++||+||.+|.||..++..|..+||+ +++++||+.+|..
T Consensus 57 ~~iv~~c~~G~rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 57 ARIVLADDDGVRADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred CeEEEECCCCChHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 89999999999999999999999998 9999999999963
No 36
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.78 E-value=4.5e-19 Score=136.40 Aligned_cols=99 Identities=14% Similarity=0.233 Sum_probs=80.2
Q ss_pred cCHHHHHHHhhc-CCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020963 192 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 270 (319)
Q Consensus 192 is~~~l~~~~~~-~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~ 270 (319)
|+++++.+.+.+ .+++|||||++.|| ..||||||+|+|+..+.... + +...+.+. .+++++
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~e~-----------~~ghi~ga~~ip~~~~~~~~--~---~~~~~~~~--~~~~~~ 62 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNESDY-----------ERWKIDGENNTPYFDPYFDF--L---EIEEDILD--QLPDDQ 62 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHHHH-----------hhcccCCCcccccccchHHH--H---HhhHHHHh--hCCCCC
Confidence 467888888765 35899999999999 68999999999998764310 0 00122333 567899
Q ss_pred CEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 271 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 271 ~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
+||+||.+|.||..++..|+.+||+ ++.+.||+.+|..
T Consensus 63 ~ivv~C~~G~rs~~aa~~L~~~G~~-~~~l~GG~~~W~~ 100 (100)
T cd01523 63 EVTVICAKEGSSQFVAELLAERGYD-VDYLAGGMKAWSE 100 (100)
T ss_pred eEEEEcCCCCcHHHHHHHHHHcCce-eEEeCCcHHhhcC
Confidence 9999999999999999999999998 9999999999963
No 37
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.78 E-value=3.6e-19 Score=138.09 Aligned_cols=99 Identities=26% Similarity=0.350 Sum_probs=79.8
Q ss_pred cCHHHHHHHhhcC--CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCC---CCCHHHHHHHHHHcCC
Q 020963 192 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQT---LLPADELKKRFEQEGI 266 (319)
Q Consensus 192 is~~~l~~~~~~~--~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~---~~~~~~l~~~l~~~~~ 266 (319)
||++++.+++..+ +++|||||++.+| ..||||||+|+|+..++..... +...+.+.+
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR~~~e~-----------~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~------- 62 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIRSSPDF-----------RRGHIEGSINIPFSSVFLKEGELEQLPTVPRLEN------- 62 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECCCHHHH-----------hCCccCCCEeCCHHHhcccccccccccchHHHHh-------
Confidence 5788999988753 6899999999999 6899999999999887543221 222222221
Q ss_pred CCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHh
Q 020963 267 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 267 ~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~ 308 (319)
.++++||+||.+|.+|..+++.|..+||++|++++||+.+|+
T Consensus 63 ~~~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 63 YKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred hcCCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 247899999999999999999999999999999999999996
No 38
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.78 E-value=8.1e-19 Score=134.68 Aligned_cols=98 Identities=21% Similarity=0.334 Sum_probs=83.1
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCC
Q 020963 22 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 101 (319)
Q Consensus 22 ~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (319)
..|++++|.++++++ .+|||+| +.++|..||||||+|+|+..+... ...++
T Consensus 2 ~~i~~~el~~~~~~~-~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~-------------------~~~~~ 52 (99)
T cd01527 2 TTISPNDACELLAQG-AVLVDIR---------EPDEYLRERIPGARLVPLSQLESE-------------------GLPLV 52 (99)
T ss_pred CccCHHHHHHHHHCC-CEEEECC---------CHHHHHhCcCCCCEECChhHhccc-------------------ccCCC
Confidence 468999999998875 8999999 788999999999999998765331 01256
Q ss_pred CCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCc
Q 020963 102 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 149 (319)
Q Consensus 102 ~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~ 149 (319)
++++||+||..|.+ +..++..|+.+||++|++|.||+.+|+..|+|+
T Consensus 53 ~~~~iv~~c~~g~~-s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 53 GANAIIFHCRSGMR-TQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCcEEEEeCCCch-HHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 78899999987765 788999999999999999999999999998874
No 39
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.78 E-value=2.2e-18 Score=159.96 Aligned_cols=171 Identities=19% Similarity=0.201 Sum_probs=116.3
Q ss_pred cHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCccccccc---------CC-----CCCCCCCCHHH
Q 020963 25 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR---------TT-----NLPHMLPSEEA 90 (319)
Q Consensus 25 s~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~---------~~-----~~~~~~~~~~~ 90 (319)
...++.+.+.+ +++||||| .+.+|..||||||+|+|+...... .+ .++..+++.+.
T Consensus 4 ~~~~~~~~~~~-~~~lIDVR---------sp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l 73 (345)
T PRK11784 4 DAQDFRALFLN-DTPLIDVR---------SPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI 73 (345)
T ss_pred cHHHHHHHHhC-CCEEEECC---------CHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence 45667666544 78999999 789999999999999998532110 00 01122333222
Q ss_pred HH---HHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccCCCcchhhhhhhhHHH
Q 020963 91 FA---AAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEA 167 (319)
Q Consensus 91 ~~---~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~ 167 (319)
.. +.+...+ +++++||+||..|+.+|..+++.|+.+|| +|.+|+||+.+|.+.+.+.....+
T Consensus 74 ~~~~~~~~~~~~-~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~------------- 138 (345)
T PRK11784 74 AAHREEAWADFP-RANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAP------------- 138 (345)
T ss_pred HHHHHHHHHhcc-cCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhc-------------
Confidence 22 1222211 47889999997655669999999999999 599999999999988875544321
Q ss_pred HHHHhcCcccCCcccccccCCccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCc
Q 020963 168 IEKVYQGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPF 241 (319)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~ 241 (319)
.+..+ ..+.........+++..+.+.+.++||+|+..+|.|. ..|+|++ +-|.
T Consensus 139 ----------~~~~~-ivl~G~TGsGKT~iL~~L~~~~~~vlDlE~~aehrGS--------~fG~~~~--~qps 191 (345)
T PRK11784 139 ----------AQFPL-VVLGGNTGSGKTELLQALANAGAQVLDLEGLANHRGS--------SFGRLGG--PQPS 191 (345)
T ss_pred ----------ccCce-EecCCCCcccHHHHHHHHHhcCCeEEECCchhhhccc--------cccCCCC--CCcc
Confidence 11122 1234445677788988888778899999999999876 3577766 4444
No 40
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.78 E-value=6.1e-19 Score=134.41 Aligned_cols=92 Identities=22% Similarity=0.438 Sum_probs=79.8
Q ss_pred cCHHHHHHHhhc-CCcEEEeccCCCcccCCCCCCCCCCCc--cccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 020963 192 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRS--GHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 268 (319)
Q Consensus 192 is~~~l~~~~~~-~~~~liDvR~~~e~~g~~~~~~~~~~~--ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 268 (319)
++++++.+.++. .+++|||+|++.+| .. ||||||+|+|+..+ .+.+. .+++
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~e~-----------~~~~~hi~ga~~ip~~~~-------------~~~~~--~~~~ 55 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPASY-----------AALPDHIPGAIHLDEDSL-------------DDWLG--DLDR 55 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHHHH-----------hcccCCCCCCeeCCHHHH-------------HHHHh--hcCC
Confidence 567888887765 46899999999999 56 99999999999654 33444 5788
Q ss_pred CCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 269 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 269 ~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
+++|||||.+|.+|..++..|+.+||.++++++||+.+|..
T Consensus 56 ~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~~w~~ 96 (96)
T cd01444 56 DRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEAWRR 96 (96)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHHHhcC
Confidence 99999999999999999999999999999999999999963
No 41
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.78 E-value=6e-19 Score=135.99 Aligned_cols=95 Identities=19% Similarity=0.328 Sum_probs=79.5
Q ss_pred cCHHHHHHHhhcC--CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcC-CCC
Q 020963 192 WTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEG-ISL 268 (319)
Q Consensus 192 is~~~l~~~~~~~--~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~-~~~ 268 (319)
|+++++.+.+..+ +++|||+|+..|| ..+|||||+|+|+.++.. .+.... .++
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~-----------~~~hI~ga~~ip~~~~~~-------------~~~~~~~~~~ 57 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVREPEEL-----------EIAFLPGFLHLPMSEIPE-------------RSKELDSDNP 57 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECCCHHHH-----------hcCcCCCCEecCHHHHHH-------------HHHHhcccCC
Confidence 5788888888764 6899999999999 679999999999866532 222111 256
Q ss_pred CCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCC
Q 020963 269 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 269 ~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~ 310 (319)
+++||+||++|.||..+++.|..+||.++++|+||+.+|...
T Consensus 58 ~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~ 99 (101)
T cd01528 58 DKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSLE 99 (101)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence 899999999999999999999999999999999999999764
No 42
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.78 E-value=8e-19 Score=157.60 Aligned_cols=120 Identities=21% Similarity=0.366 Sum_probs=103.5
Q ss_pred CCccccCHHHHHHHhhcC-----CcEEEeccCC--CcccCCCCCCCCCCCccccCCCcccCcccccCCC----CCCCCHH
Q 020963 187 QPHLIWTLEQVKRNIEEG-----TYQLVDARSK--ARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLPAD 255 (319)
Q Consensus 187 ~~~~~is~~~l~~~~~~~-----~~~liDvR~~--~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~----~~~~~~~ 255 (319)
....+|+++||.+++.++ +..+++++.. .+| ..||||||++++++...+.. +.|++++
T Consensus 8 ~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y-----------~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e 76 (285)
T COG2897 8 SSEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEY-----------LEGHIPGAVFFDWEADLSDPVPLPHMLPSPE 76 (285)
T ss_pred CcceEEcHHHHHhhccccccccCceEEEeCCcchHHHH-----------HhccCCCCEecCHHHhhcCCCCCCCCCCCHH
Confidence 345699999999999866 4555555555 566 68999999999999977643 5688999
Q ss_pred HHHHHHHHcCCCCCCCEEEecC-CcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccC
Q 020963 256 ELKKRFEQEGISLEKPVVTACG-TGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318 (319)
Q Consensus 256 ~l~~~l~~~~~~~~~~vivyC~-~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~ 318 (319)
+|.++|+++||+.+.+||+|.. .+..|+++||+|+.+|.+||++||||+.+|..++ +|++++
T Consensus 77 ~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g-~p~~~~ 139 (285)
T COG2897 77 QFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAG-LPLETE 139 (285)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcC-CCccCC
Confidence 9999999999999999999996 5678999999999999999999999999999995 999864
No 43
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.78 E-value=2.1e-18 Score=134.62 Aligned_cols=104 Identities=22% Similarity=0.309 Sum_probs=87.8
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCC
Q 020963 20 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 99 (319)
Q Consensus 20 ~~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (319)
..+.|++++|.+++++++++|||+| +..+|..||||||+|+|+. .|.+.+..
T Consensus 3 ~~~~is~~el~~~l~~~~~~ivDvR---------~~~e~~~ghi~gA~~ip~~-----------------~l~~~~~~-- 54 (108)
T PRK00162 3 QFECINVEQAHQKLQEGGAVLVDIR---------DPQSFAMGHAPGAFHLTND-----------------SLGAFMRQ-- 54 (108)
T ss_pred CccccCHHHHHHHHHcCCCEEEEcC---------CHHHHhcCCCCCCeECCHH-----------------HHHHHHHh--
Confidence 3678999999999977678999999 7889999999999999975 34444444
Q ss_pred CCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccC
Q 020963 100 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 152 (319)
Q Consensus 100 i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 152 (319)
++++++++|||..|.+ +..++..|+..||++|++|+||+.+|...++|++..
T Consensus 55 ~~~~~~ivv~c~~g~~-s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 55 ADFDTPVMVMCYHGNS-SQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred cCCCCCEEEEeCCCCC-HHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 4567899999987764 778888999999999999999999999999988754
No 44
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.77 E-value=8.3e-18 Score=159.15 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=88.8
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCC
Q 020963 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 100 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (319)
.+.|++++|.+++++ +.+|||+| +..+|..||||||+|+|+..+ .+.+....+
T Consensus 2 v~~is~~el~~~l~~-~~~ivDvR---------~~~e~~~ghIpgAi~ip~~~l-----------------~~~~~~~~~ 54 (376)
T PRK08762 2 IREISPAEARARAAQ-GAVLIDVR---------EAHERASGQAEGALRIPRGFL-----------------ELRIETHLP 54 (376)
T ss_pred CceeCHHHHHHHHhC-CCEEEECC---------CHHHHhCCcCCCCEECCHHHH-----------------HHHHhhhcC
Confidence 357999999999976 58999999 788999999999999997543 333444455
Q ss_pred CCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccCC
Q 020963 101 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 153 (319)
Q Consensus 101 ~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 153 (319)
+++++||+||..|. ++..+++.|+.+||++|++|+||+.+|...|+|++...
T Consensus 55 ~~~~~IvvyC~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 106 (376)
T PRK08762 55 DRDREIVLICASGT-RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPR 106 (376)
T ss_pred CCCCeEEEEcCCCc-HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCcccccc
Confidence 78899999998766 47889999999999999999999999999999988653
No 45
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.77 E-value=1.4e-18 Score=131.01 Aligned_cols=89 Identities=22% Similarity=0.466 Sum_probs=76.5
Q ss_pred cCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCC
Q 020963 192 WTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKP 271 (319)
Q Consensus 192 is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~ 271 (319)
++++++.++++ ++.+|||+|+.++| ..||||||+|+|+.++ ...+. .++++++
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R~~~~~-----------~~~hipgA~~ip~~~~-------------~~~~~--~~~~~~~ 53 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVRTPQEF-----------EKGHIKGAINIPLDEL-------------RDRLN--ELPKDKE 53 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECCCHHHH-----------hcCCCCCCEeCCHHHH-------------HHHHH--hcCCCCc
Confidence 35678888874 56889999999999 6899999999998543 33444 4678899
Q ss_pred EEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHh
Q 020963 272 VVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 272 vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~ 308 (319)
||+||.+|.++..++..|+.+|+ ++++++||+.+|+
T Consensus 54 vvl~c~~g~~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 54 IIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred EEEEcCCChhHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 99999999999999999999999 8999999999996
No 46
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3e-18 Score=133.23 Aligned_cols=116 Identities=18% Similarity=0.244 Sum_probs=98.2
Q ss_pred CCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhC
Q 020963 19 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 98 (319)
Q Consensus 19 ~~~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (319)
.....++.++++++++.+++++|||| ..+||..||||.+||||+..... ...++ ...|.+-+...
T Consensus 20 ~~~~sv~~~qvk~L~~~~~~~llDVR---------epeEfk~gh~~~siNiPy~~~~~-----~~~l~-~~eF~kqvg~~ 84 (136)
T KOG1530|consen 20 SNPQSVSVEQVKNLLQHPDVVLLDVR---------EPEEFKQGHIPASINIPYMSRPG-----AGALK-NPEFLKQVGSS 84 (136)
T ss_pred CCcEEEEHHHHHHHhcCCCEEEEeec---------CHHHhhccCCcceEecccccccc-----ccccC-CHHHHHHhccc
Confidence 45678999999999999889999999 78999999999999999975432 12333 44677777777
Q ss_pred CCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcc
Q 020963 99 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVE 150 (319)
Q Consensus 99 ~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~ 150 (319)
..+.++.|||+|.+|.+ +..+...|..+||+||.++.|||.+|...++|..
T Consensus 85 kp~~d~eiIf~C~SG~R-s~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 85 KPPHDKEIIFGCASGVR-SLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CCCCCCcEEEEeccCcc-hhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 77788899999999876 7888899999999999999999999999988753
No 47
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.77 E-value=7e-19 Score=137.85 Aligned_cols=99 Identities=26% Similarity=0.354 Sum_probs=84.0
Q ss_pred cccCHHHHHHHhhcC--CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCC
Q 020963 190 LIWTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 267 (319)
Q Consensus 190 ~~is~~~l~~~~~~~--~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~ 267 (319)
+.++++++.+.+..+ +++|||+|++.+| ..||||||+|+|...+.. ..+. +++
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR~~~e~-----------~~ghIpgA~~ip~~~l~~------------~~~~--~i~ 62 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVRSAEAY-----------ARGHVPGAINLPHREICE------------NATA--KLD 62 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECCCHHHH-----------hcCCCCCCEeCCHHHhhh------------Hhhh--cCC
Confidence 478899999988753 5899999999999 689999999999866431 1122 678
Q ss_pred CCCCEEEecCCc--HHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCC
Q 020963 268 LEKPVVTACGTG--VTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 315 (319)
Q Consensus 268 ~~~~vivyC~~G--~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~ 315 (319)
++++||+||++| .+|..+++.|+.+|++ +++|+||+.+|...+ +|+
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g-~~~ 110 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREG-YAT 110 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCC-CCC
Confidence 999999999987 4899999999999995 999999999999995 875
No 48
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.76 E-value=4.2e-19 Score=138.83 Aligned_cols=105 Identities=31% Similarity=0.603 Sum_probs=85.4
Q ss_pred CHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHc--CCCCCC
Q 020963 193 TLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE--GISLEK 270 (319)
Q Consensus 193 s~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~--~~~~~~ 270 (319)
|++|+.+.+++++++|||+|++.+| ..||||||+|+|+..+ ...........+...+... ++++++
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~~~-----------~~~hI~ga~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPEEY-----------ERGHIPGAVNIPFPSL-DPDEPSLSEDKLDEFLKELGKKIDKDK 68 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHHHH-----------HHSBETTEEEEEGGGG-SSSSSBCHHHHHHHHHHHHTHGSTTTS
T ss_pred CHHHHHhhhhCCCeEEEEeCCHHHH-----------HcCCCCCCcccccccc-ccccccccccccccccccccccccccc
Confidence 5788999987778999999999999 6899999999999887 3333445555555555443 568899
Q ss_pred CEEEecCCcHHHHHHHHH-----HHhcCCCCceeeeCcHHHHhC
Q 020963 271 PVVTACGTGVTACILALG-----LNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 271 ~vivyC~~G~ra~~~~~~-----L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
+||+||.+|.++..++.. |..+|+++|++|+|||.+|.+
T Consensus 69 ~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~ 112 (113)
T PF00581_consen 69 DIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA 112 (113)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred cceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence 999999988887777666 888999999999999999975
No 49
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.76 E-value=3.3e-18 Score=130.36 Aligned_cols=93 Identities=22% Similarity=0.272 Sum_probs=74.4
Q ss_pred ccHHHHHHhcCCC--CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCC
Q 020963 24 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 101 (319)
Q Consensus 24 Is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (319)
||+++|.++++++ +++||||| +..+|..||||||+|+|+..+.. .+..+...
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR---------~~~e~~~ghipga~~ip~~~l~~-----------------~~~~~~~~ 54 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVR---------TPEEYEAGHLPGFRHTPGGQLVQ-----------------ETDHFAPV 54 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECC---------CHHHHHhCCCCCcEeCCHHHHHH-----------------HHHHhccc
Confidence 6899999999764 58899999 78999999999999999864422 11111122
Q ss_pred CCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHh
Q 020963 102 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 144 (319)
Q Consensus 102 ~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 144 (319)
++++||+||..|.+ +..++..|+.+||+ |++|+||+.+|.+
T Consensus 55 ~~~~iv~~c~~G~r-s~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 55 RGARIVLADDDGVR-ADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred CCCeEEEECCCCCh-HHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 46889999998776 67778889999998 9999999999963
No 50
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.76 E-value=1.5e-18 Score=137.41 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=84.5
Q ss_pred cCHHHHHHHhhc-CCcEEEeccCCCcccCCCCCCCCCCC-ccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCC
Q 020963 192 WTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIR-SGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLE 269 (319)
Q Consensus 192 is~~~l~~~~~~-~~~~liDvR~~~e~~g~~~~~~~~~~-~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~ 269 (319)
+|++++.+++++ ++.+|||||++.|| . .||||||+|+|+.++.... .+ ..+...+... ++++
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~e~-----------~~~ghIpgA~~ip~~~~~~~~---~~-~~~~~~l~~~-~~~~ 64 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEAEW-----------KFVGGVPDAVHVAWQVYPDME---IN-PNFLAELEEK-VGKD 64 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHHHH-----------hcccCCCCceecchhhccccc---cC-HHHHHHHHhh-CCCC
Confidence 467888888876 57999999999999 6 8999999999998875421 11 2333444432 2788
Q ss_pred CCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCC
Q 020963 270 KPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 270 ~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~ 310 (319)
++||+||.+|.+|..++..|..+||.+++.|.||+.+|.+.
T Consensus 65 ~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 65 RPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred CeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 99999999999999999999999999999999999999765
No 51
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.76 E-value=3.6e-18 Score=133.77 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=83.9
Q ss_pred CCcccHHHHHHhcCCC--CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhC
Q 020963 21 EPVVSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 98 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (319)
...|++++|.++++++ +++|||+| +..+|..||||||+|+|+..+.. .. ..
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~l~~----------------~~--~~ 59 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVR---------SAEAYARGHVPGAINLPHREICE----------------NA--TA 59 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECC---------CHHHHhcCCCCCCEeCCHHHhhh----------------Hh--hh
Confidence 4679999999999753 58999999 67899999999999999865421 01 12
Q ss_pred CCCCCCeEEEEcCCCc-chhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCc
Q 020963 99 GLENKDGLVVYDGKGI-FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 149 (319)
Q Consensus 99 ~i~~~~~vvly~~~g~-~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~ 149 (319)
+++++++||+||..+. ..+.++++.|+.+||+ +++|+||+.+|...|+|+
T Consensus 60 ~i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 60 KLDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred cCCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 4678899999998763 4588999999999995 999999999999999875
No 52
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.75 E-value=4.2e-18 Score=131.41 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=79.4
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhh-hhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCC
Q 020963 24 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 102 (319)
Q Consensus 24 Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~-~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 102 (319)
|++++|.+++++++.+|||+| +..+| ..||||||+|+|+..+...... ...+...++++
T Consensus 1 is~~el~~~~~~~~~~iiDvR---------~~~~~~~~ghIpga~~ip~~~~~~~~~~-----------~~~~~~~~~~~ 60 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVR---------DPRELERTGMIPGAFHAPRGMLEFWADP-----------DSPYHKPAFAE 60 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECC---------CHHHHHhcCCCCCcEEcccchhhhhcCc-----------cccccccCCCC
Confidence 689999999987789999998 56677 5799999999998654211000 00111224678
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCC
Q 020963 103 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 146 (319)
Q Consensus 103 ~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 146 (319)
+++||+||..|.+ +.++++.|+.+||++|++|+||+.+|..+|
T Consensus 61 ~~~ivv~c~~g~~-s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 61 DKPFVFYCASGWR-SALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCeEEEEcCCCCc-HHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 8999999987654 789999999999999999999999998664
No 53
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.75 E-value=2.3e-18 Score=131.44 Aligned_cols=87 Identities=30% Similarity=0.479 Sum_probs=72.9
Q ss_pred cCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEecCCcHHH
Q 020963 203 EGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTA 282 (319)
Q Consensus 203 ~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~vivyC~~G~ra 282 (319)
+++++|||||++.+| ..||||||+|+|+..+.. ....++. +. .++++++||+||.+|.+|
T Consensus 10 ~~~~~iiDvR~~~~~-----------~~~hIpgA~~ip~~~~~~------~~~~~~~-~~--~~~~~~~ivv~c~~g~~s 69 (96)
T cd01529 10 EPGTALLDVRAEDEY-----------AAGHLPGKRSIPGAALVL------RSQELQA-LE--APGRATRYVLTCDGSLLA 69 (96)
T ss_pred CCCeEEEeCCCHHHH-----------cCCCCCCcEeCCHHHhcC------CHHHHHH-hh--cCCCCCCEEEEeCChHHH
Confidence 456899999999999 689999999999876532 2234433 44 357899999999999999
Q ss_pred HHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 283 CILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 283 ~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
..+++.|+.+|+++|++|+||+.+|.+
T Consensus 70 ~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 70 RFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred HHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 999999999999999999999999964
No 54
>PLN02160 thiosulfate sulfurtransferase
Probab=99.75 E-value=1.1e-17 Score=135.87 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=90.2
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCc--eecCcccccccCCCCCCCCCCHHHHHHHHHhC
Q 020963 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGA--LFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 98 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgA--i~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (319)
...|+++++.+++++ +.+||||| +..+|..|||||| +|+|+..+.. . ..+.+.+..... ..
T Consensus 14 ~~~i~~~e~~~~~~~-~~~lIDVR---------~~~E~~~ghIpgA~~iniP~~~~~~-~----~~l~~~~~~~~~-~~- 76 (136)
T PLN02160 14 VVSVDVSQAKTLLQS-GHQYLDVR---------TQDEFRRGHCEAAKIVNIPYMLNTP-Q----GRVKNQEFLEQV-SS- 76 (136)
T ss_pred eeEeCHHHHHHHHhC-CCEEEECC---------CHHHHhcCCCCCcceecccchhcCc-c----cccCCHHHHHHH-Hh-
Confidence 568999999999976 46899999 7899999999999 8999754421 1 112223222222 22
Q ss_pred CCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccCC
Q 020963 99 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 153 (319)
Q Consensus 99 ~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 153 (319)
.++++++||+||..|.+ +..++..|+..||++|+.|.||+.+|.+.|+|+.+..
T Consensus 77 ~~~~~~~IivyC~sG~R-S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 77 LLNPADDILVGCQSGAR-SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred ccCCCCcEEEECCCcHH-HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 24678899999998765 8899999999999999999999999999999999864
No 55
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.75 E-value=8.1e-18 Score=128.05 Aligned_cols=99 Identities=32% Similarity=0.617 Sum_probs=81.3
Q ss_pred CCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCCCeEEEEcCCCc
Q 020963 35 EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGI 114 (319)
Q Consensus 35 ~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvly~~~g~ 114 (319)
+++++|||+| +..+|..||||||+|+|+..+...... . ....+.+.+...++.++++||+||..+.
T Consensus 2 ~~~~~ivDvR---------~~~e~~~~hi~ga~~i~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~iv~~c~~g~ 67 (100)
T smart00450 2 DEKVVLLDVR---------SPEEYEGGHIPGAVNIPLSELLDRRGE----L-DILEFEELLKRLGLDKDKPVVVYCRSGN 67 (100)
T ss_pred CCCEEEEECC---------CHHHhccCCCCCceeCCHHHhccCCCC----c-CHHHHHHHHHHcCCCCCCeEEEEeCCCc
Confidence 3478999999 788999999999999999866442211 1 1226777778888999999999997655
Q ss_pred chhHHHHHHHHHhcCCceEEecCCHHHHHhCCCC
Q 020963 115 FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 148 (319)
Q Consensus 115 ~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p 148 (319)
.+.++++.|+.+|+++|++|+||+.+|...+.|
T Consensus 68 -~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 68 -RSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred -HHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 589999999999999999999999999988764
No 56
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.75 E-value=5e-18 Score=135.50 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=88.9
Q ss_pred CCCCCCcccHHHHHHhcCC-CCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHH-H
Q 020963 17 VSPKEPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAA-A 94 (319)
Q Consensus 17 ~~~~~~~Is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~-~ 94 (319)
+......|+++++.+++++ .+++|||+| +..+|..||||||+|+|+..+..... .+.. .
T Consensus 3 ~~~~~~~is~~el~~~~~~~~~~~ivDvR---------~~~e~~~~hIpgai~ip~~~~~~~~~----------~~~~~~ 63 (122)
T cd01526 3 LLSPEERVSVKDYKNILQAGKKHVLLDVR---------PKVHFEICRLPEAINIPLSELLSKAA----------ELKSLQ 63 (122)
T ss_pred CCCcccccCHHHHHHHHhCCCCeEEEEcC---------CHHHhhcccCCCCeEccHHHHhhhhh----------hhhhhh
Confidence 3345678999999999976 578999999 78999999999999999877643111 1111 2
Q ss_pred HHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcC-CceEEecCCHHHHHhCCCCc
Q 020963 95 VSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGH-DRVWVLDGGLPRWRASGYDV 149 (319)
Q Consensus 95 ~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~-~~v~~l~GG~~~W~~~g~p~ 149 (319)
+...+++++++||+||..|.+ +..++..|+.+|| ++|+.|+||+.+|.....+.
T Consensus 64 ~~~~~~~~~~~ivv~C~~G~r-s~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~ 118 (122)
T cd01526 64 ELPLDNDKDSPIYVVCRRGND-SQTAVRKLKELGLERFVRDIIGGLKAWADKVDPT 118 (122)
T ss_pred hcccccCCCCcEEEECCCCCc-HHHHHHHHHHcCCccceeeecchHHHHHHHhCcc
Confidence 234456889999999988764 8888899999999 69999999999999775443
No 57
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.74 E-value=4.6e-18 Score=135.41 Aligned_cols=95 Identities=17% Similarity=0.304 Sum_probs=78.6
Q ss_pred ccCHHHHHHHhhc------CCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHH--
Q 020963 191 IWTLEQVKRNIEE------GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFE-- 262 (319)
Q Consensus 191 ~is~~~l~~~~~~------~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~-- 262 (319)
.|+++++.+.++. ++++|||||++.|| ..||||||+|||+.+ .+...+.
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~-----------~~ghI~gA~~ip~~~------------~l~~~~~~~ 59 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEY-----------NGGHIKGAVNLSTKD------------ELEEFFLDK 59 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECCCHHHH-----------hCCcCCCCEeCCcHH------------HHHHHHHHh
Confidence 4788899888865 36899999999999 689999999999852 1222222
Q ss_pred --HcCCCCCCCEEEecC-CcHHHHHHHHHHHhc------------CCCCceeeeCcHHHHh
Q 020963 263 --QEGISLEKPVVTACG-TGVTACILALGLNRL------------GKHDVAVYDGSWTEWG 308 (319)
Q Consensus 263 --~~~~~~~~~vivyC~-~G~ra~~~~~~L~~~------------G~~~v~~~~Gg~~~W~ 308 (319)
..+++++++|||||. +|.||..+++.|+.+ ||.+|++++||+..|-
T Consensus 60 ~~~~~~~~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 60 PGVASKKKRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred hcccccCCCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 235789999999997 999999999999874 9999999999999984
No 58
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.74 E-value=5.8e-18 Score=138.97 Aligned_cols=87 Identities=26% Similarity=0.426 Sum_probs=77.4
Q ss_pred CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEecCCcHHHHH
Q 020963 205 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTACI 284 (319)
Q Consensus 205 ~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~vivyC~~G~ra~~ 284 (319)
+++|||||++.+| +.||||||+|+|. .+|.+.+.. ++++++|||||.+|.+|..
T Consensus 11 ~~~ivDvR~~~e~-----------~~gHIpgAi~~~~-------------~~l~~~l~~--l~~~~~vVv~c~~g~~a~~ 64 (145)
T cd01535 11 QTAVVDVTASANY-----------VKRHIPGAWWVLR-------------AQLAQALEK--LPAAERYVLTCGSSLLARF 64 (145)
T ss_pred CeEEEECCCHHHH-----------HcCCCCCceeCCH-------------HHHHHHHHh--cCCCCCEEEEeCCChHHHH
Confidence 5899999999999 6899999999976 456666774 4578999999999999999
Q ss_pred HHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccC
Q 020963 285 LALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318 (319)
Q Consensus 285 ~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~ 318 (319)
+++.|+..|+.+|++++||+.+|...+ +|++++
T Consensus 65 aa~~L~~~G~~~v~~L~GG~~aW~~~g-~pl~~~ 97 (145)
T cd01535 65 AAADLAALTVKPVFVLEGGTAAWIAAG-LPVESG 97 (145)
T ss_pred HHHHHHHcCCcCeEEecCcHHHHHHCC-CCcccC
Confidence 999999999999999999999999995 999864
No 59
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.74 E-value=8.5e-18 Score=131.39 Aligned_cols=106 Identities=25% Similarity=0.505 Sum_probs=80.2
Q ss_pred cHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhC--CCCC
Q 020963 25 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL--GLEN 102 (319)
Q Consensus 25 s~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~i~~ 102 (319)
||+||.+++.+++++||||| +..+|..||||||+|+|+..+.. .......+.+...+... .+++
T Consensus 1 s~~el~~~l~~~~~~liD~R---------~~~~~~~~hI~ga~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 66 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVR---------SPEEYERGHIPGAVNIPFPSLDP-----DEPSLSEDKLDEFLKELGKKIDK 66 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEES---------SHHHHHHSBETTEEEEEGGGGSS-----SSSBCHHHHHHHHHHHHTHGSTT
T ss_pred CHHHHHhhhhCCCeEEEEeC---------CHHHHHcCCCCCCcccccccccc-----ccccccccccccccccccccccc
Confidence 68999999977789999999 88999999999999999976511 12233444555444444 4578
Q ss_pred CCeEEEEcCCCcchhHH-----HHHHHHHhcCCceEEecCCHHHHHhC
Q 020963 103 KDGLVVYDGKGIFSAAR-----VWWMFRVFGHDRVWVLDGGLPRWRAS 145 (319)
Q Consensus 103 ~~~vvly~~~g~~~a~~-----~~~~l~~~G~~~v~~l~GG~~~W~~~ 145 (319)
++.||+||..+.. +.. .++.|..+||++|++|+|||.+|.++
T Consensus 67 ~~~iv~yc~~~~~-~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 67 DKDIVFYCSSGWR-SGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TSEEEEEESSSCH-HHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred cccceeeeecccc-cchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 8899999965543 333 34458999999999999999999863
No 60
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.74 E-value=9.2e-18 Score=133.69 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=78.2
Q ss_pred CcccHHHHHHhcCCC------CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcc-cccccCCCCCCCCCCHHHHHHH
Q 020963 22 PVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVD-GVADRTTNLPHMLPSEEAFAAA 94 (319)
Q Consensus 22 ~~Is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~-~l~~~~~~~~~~~~~~~~~~~~ 94 (319)
..||++++.++++++ +++||||| ...+|..||||||+|+|.. .+.. .+...
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR---------~~~e~~~ghI~gA~~ip~~~~l~~-------------~~~~~ 59 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCR---------FPYEYNGGHIKGAVNLSTKDELEE-------------FFLDK 59 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECC---------CHHHHhCCcCCCCEeCCcHHHHHH-------------HHHHh
Confidence 358999999998753 68999999 6789999999999999975 2211 11111
Q ss_pred HHhCCCCCCCeEEEEcC-CCcchhHHHHHHHHHh------------cCCceEEecCCHHHHH
Q 020963 95 VSALGLENKDGLVVYDG-KGIFSAARVWWMFRVF------------GHDRVWVLDGGLPRWR 143 (319)
Q Consensus 95 ~~~~~i~~~~~vvly~~-~g~~~a~~~~~~l~~~------------G~~~v~~l~GG~~~W~ 143 (319)
...++++++++||+||. +|. ++.++++.|+.+ ||.+|++|+||+.+|.
T Consensus 60 ~~~~~~~~~~~vv~yC~~sg~-rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 60 PGVASKKKRRVLIFHCEFSSK-RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred hcccccCCCCEEEEECCCccc-cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 12245788999999997 555 588999999985 9999999999999884
No 61
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.73 E-value=1.6e-17 Score=127.95 Aligned_cols=94 Identities=22% Similarity=0.353 Sum_probs=77.2
Q ss_pred ccHHHHHHhcCCC--CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCC-
Q 020963 24 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL- 100 (319)
Q Consensus 24 Is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i- 100 (319)
|++++|.++++.+ +++|||+| +..+|..+|||||+|+|+..+.. .+..+..
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR---------~~~e~~~~hI~ga~~ip~~~~~~-----------------~~~~~~~~ 55 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVR---------EPEELEIAFLPGFLHLPMSEIPE-----------------RSKELDSD 55 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECC---------CHHHHhcCcCCCCEecCHHHHHH-----------------HHHHhccc
Confidence 7899999999864 58999999 78899999999999999865422 2222221
Q ss_pred CCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHh
Q 020963 101 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 144 (319)
Q Consensus 101 ~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 144 (319)
+++++||+||..|.+ +.++++.|..+||++|++|+||+.+|..
T Consensus 56 ~~~~~vv~~c~~g~r-s~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 56 NPDKDIVVLCHHGGR-SMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred CCCCeEEEEeCCCch-HHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 468899999988764 7888889999999999999999999975
No 62
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.73 E-value=1.5e-17 Score=127.90 Aligned_cols=98 Identities=22% Similarity=0.154 Sum_probs=77.1
Q ss_pred ccHHHHHHhcCC-CCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCC
Q 020963 24 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 102 (319)
Q Consensus 24 Is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 102 (319)
|++++|.+++++ .+++||||| +..+|..||||||+|+|+..+... .+ +...+.+.. +++
T Consensus 1 is~~el~~~l~~~~~~~liDvR---------~~~e~~~ghi~ga~~ip~~~~~~~------~~---~~~~~~~~~--~~~ 60 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVR---------NESDYERWKIDGENNTPYFDPYFD------FL---EIEEDILDQ--LPD 60 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeC---------CHHHHhhcccCCCcccccccchHH------HH---HhhHHHHhh--CCC
Confidence 688999999876 368999999 788999999999999998765320 00 000222222 467
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHH
Q 020963 103 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 143 (319)
Q Consensus 103 ~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~ 143 (319)
+++||+||..|.+ +..++..|+.+||+ ++.|.||+.+|.
T Consensus 61 ~~~ivv~C~~G~r-s~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 61 DQEVTVICAKEGS-SQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCeEEEEcCCCCc-HHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 8899999988765 88899999999998 999999999996
No 63
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.71 E-value=4.2e-17 Score=124.19 Aligned_cols=92 Identities=33% Similarity=0.455 Sum_probs=77.6
Q ss_pred cccHHHHHHhcCC-CCeEEEEeecCCCCCCCCchhhhhh--cCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCC
Q 020963 23 VVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQV--AHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 99 (319)
Q Consensus 23 ~Is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~~~~--ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (319)
.|+++++.+++++ .+++|||+| +..+|.. ||||||+|+|+..+ .+.+..
T Consensus 1 ~i~~~~~~~~~~~~~~~~ivDvR---------~~~e~~~~~~hi~ga~~ip~~~~-----------------~~~~~~-- 52 (96)
T cd01444 1 RISVDELAELLAAGEAPVLLDVR---------DPASYAALPDHIPGAIHLDEDSL-----------------DDWLGD-- 52 (96)
T ss_pred CcCHHHHHHHHhcCCCcEEEECC---------CHHHHhcccCCCCCCeeCCHHHH-----------------HHHHhh--
Confidence 3789999999876 469999999 7789999 99999999998643 223332
Q ss_pred CCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHH
Q 020963 100 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 143 (319)
Q Consensus 100 i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~ 143 (319)
++++++||+||..|. ++.++++.|+..||++|++|+||+.+|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 568899999998665 5899999999999999999999999996
No 64
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.71 E-value=4.1e-17 Score=124.54 Aligned_cols=94 Identities=26% Similarity=0.387 Sum_probs=72.3
Q ss_pred HHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCCCe
Q 020963 26 VDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDG 105 (319)
Q Consensus 26 ~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 105 (319)
+++|.+. +++++||||| +..+|..||||||+|+|+..+.. ..+.++. +.. ++++++
T Consensus 3 ~~~l~~~--~~~~~iiDvR---------~~~~~~~~hIpgA~~ip~~~~~~----------~~~~~~~-~~~--~~~~~~ 58 (96)
T cd01529 3 ADWLGEH--EPGTALLDVR---------AEDEYAAGHLPGKRSIPGAALVL----------RSQELQA-LEA--PGRATR 58 (96)
T ss_pred hHHHhcC--CCCeEEEeCC---------CHHHHcCCCCCCcEeCCHHHhcC----------CHHHHHH-hhc--CCCCCC
Confidence 4555553 3468999999 67899999999999999865422 2334443 332 467889
Q ss_pred EEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHh
Q 020963 106 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 144 (319)
Q Consensus 106 vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 144 (319)
||+||..|.+ +..+++.|+.+||++|++|+||+.+|.+
T Consensus 59 ivv~c~~g~~-s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 59 YVLTCDGSLL-ARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred EEEEeCChHH-HHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999987664 7778888999999999999999999963
No 65
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.71 E-value=6.2e-17 Score=122.06 Aligned_cols=89 Identities=22% Similarity=0.345 Sum_probs=73.8
Q ss_pred ccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCC
Q 020963 24 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 103 (319)
Q Consensus 24 Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 103 (319)
++++++.++++ ++.+|||+| +..+|..||||||+|+|+..+ .+.+.. ++++
T Consensus 1 ~~~~e~~~~~~-~~~~iiD~R---------~~~~~~~~hipgA~~ip~~~~-----------------~~~~~~--~~~~ 51 (90)
T cd01524 1 VQWHELDNYRA-DGVTLIDVR---------TPQEFEKGHIKGAINIPLDEL-----------------RDRLNE--LPKD 51 (90)
T ss_pred CCHHHHHHHhc-CCCEEEECC---------CHHHHhcCCCCCCEeCCHHHH-----------------HHHHHh--cCCC
Confidence 47899999984 477899999 788999999999999997543 333332 4677
Q ss_pred CeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHH
Q 020963 104 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 143 (319)
Q Consensus 104 ~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~ 143 (319)
++||+||..|. .+..++..|+.+|| +|++|+||+.+|+
T Consensus 52 ~~vvl~c~~g~-~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 52 KEIIVYCAVGL-RGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CcEEEEcCCCh-hHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 89999998765 48888889999999 8999999999996
No 66
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.70 E-value=4.3e-17 Score=154.29 Aligned_cols=102 Identities=23% Similarity=0.347 Sum_probs=88.5
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCC
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEK 270 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~ 270 (319)
.++++++.+.+++ +.+|||||++.|| ..||||||+|+|+..+ .+.+....+++++
T Consensus 4 ~is~~el~~~l~~-~~~ivDvR~~~e~-----------~~ghIpgAi~ip~~~l-------------~~~~~~~~~~~~~ 58 (376)
T PRK08762 4 EISPAEARARAAQ-GAVLIDVREAHER-----------ASGQAEGALRIPRGFL-------------ELRIETHLPDRDR 58 (376)
T ss_pred eeCHHHHHHHHhC-CCEEEECCCHHHH-----------hCCcCCCCEECCHHHH-------------HHHHhhhcCCCCC
Confidence 5788999988875 4899999999999 6899999999998543 3444444557899
Q ss_pred CEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccC
Q 020963 271 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318 (319)
Q Consensus 271 ~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~ 318 (319)
+||+||++|.||..+++.|+.+||++|++|+||+.+|...+ +|++++
T Consensus 59 ~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g-~p~~~~ 105 (376)
T PRK08762 59 EIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWKDAG-LPLERP 105 (376)
T ss_pred eEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcHHHHHhcC-Cccccc
Confidence 99999999999999999999999999999999999999995 898764
No 67
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.70 E-value=5.3e-17 Score=127.74 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=76.5
Q ss_pred CcccHHHHHHhcCC--CCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCC
Q 020963 22 PVVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 99 (319)
Q Consensus 22 ~~Is~~~l~~~l~~--~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (319)
..|++++|.+++.+ ++++||||| +. +|..||||||+|+|+..+.. .+.+.....+
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR---------~~-e~~~~hi~gA~~ip~~~l~~-------------~~~~~~~~~~ 58 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVR---------DE-DYAGGHIKGSWHYPSTRFKA-------------QLNQLVQLLS 58 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcC---------Cc-ccCCCcCCCCEecCHHHHhh-------------CHHHHHHHHh
Confidence 57999999999876 458999998 67 99999999999999876533 2333334445
Q ss_pred CCCCCeEEEEcCCCcchhHHHHHHHHH--------hcCCceEEecCCHHHHHhC
Q 020963 100 LENKDGLVVYDGKGIFSAARVWWMFRV--------FGHDRVWVLDGGLPRWRAS 145 (319)
Q Consensus 100 i~~~~~vvly~~~g~~~a~~~~~~l~~--------~G~~~v~~l~GG~~~W~~~ 145 (319)
.+++++||+||..++.++..++..|.. .|+.+|++|+||+.+|.+.
T Consensus 59 ~~~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 59 GSKKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred cCCCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 577889999997433335555544433 4999999999999999864
No 68
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.70 E-value=5.8e-17 Score=128.37 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=83.1
Q ss_pred ccHHHHHHhcCC-CCeEEEEeecCCCCCCCCchhhhh-hcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCC
Q 020963 24 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQ-VAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 101 (319)
Q Consensus 24 Is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~~~-~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 101 (319)
||++++.+++++ ++.+||||| +..+|. .||||||+|+|+..+... .++ ..|...+.... +
T Consensus 1 is~~el~~~l~~~~~~~vIDvR---------~~~e~~~~ghIpgA~~ip~~~~~~~-------~~~-~~~~~~l~~~~-~ 62 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVR---------TEAEWKFVGGVPDAVHVAWQVYPDM-------EIN-PNFLAELEEKV-G 62 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECC---------CHHHHhcccCCCCceecchhhcccc-------ccC-HHHHHHHHhhC-C
Confidence 689999999987 579999999 788999 999999999998765321 111 23444444433 6
Q ss_pred CCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCC
Q 020963 102 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 146 (319)
Q Consensus 102 ~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 146 (319)
++++||+||..|. ++..+++.|+.+||++|+.|.||+.+|....
T Consensus 63 ~~~~ivv~C~~G~-rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~~ 106 (117)
T cd01522 63 KDRPVLLLCRSGN-RSIAAAEAAAQAGFTNVYNVLEGFEGDLDAA 106 (117)
T ss_pred CCCeEEEEcCCCc-cHHHHHHHHHHCCCCeEEECcCceecCCCCC
Confidence 7889999998775 4888999999999999999999999997653
No 69
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.70 E-value=4e-17 Score=125.52 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=70.0
Q ss_pred CCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEecCCcHHHH
Q 020963 204 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTAC 283 (319)
Q Consensus 204 ~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~vivyC~~G~ra~ 283 (319)
....+||+|++++| ..||||||+|+|+.+ +...+.....+++++||+||.+|.+|.
T Consensus 17 ~~~~lIDvR~~~ef-----------~~ghIpgAinip~~~-------------l~~~l~~~~~~~~~~vvlyC~~G~rS~ 72 (101)
T TIGR02981 17 AAEHWIDVRIPEQY-----------QQEHIQGAINIPLKE-------------IKEHIATAVPDKNDTVKLYCNAGRQSG 72 (101)
T ss_pred cCCEEEECCCHHHH-----------hcCCCCCCEECCHHH-------------HHHHHHHhCCCCCCeEEEEeCCCHHHH
Confidence 35779999999999 689999999999854 444555555677889999999999999
Q ss_pred HHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 284 ILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 284 ~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
.++..|+.+||.++.++ ||+.+|.-
T Consensus 73 ~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 73 MAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 99999999999999986 99999974
No 70
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.69 E-value=1e-16 Score=131.56 Aligned_cols=96 Identities=30% Similarity=0.385 Sum_probs=79.1
Q ss_pred HHHhcCCC-CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCCCeEE
Q 020963 29 LHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLV 107 (319)
Q Consensus 29 l~~~l~~~-~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vv 107 (319)
|.+++.++ +++|||+| +..+|..||||||+|+|.. +|.+.+..++ ++++||
T Consensus 2 l~~~l~~~~~~~ivDvR---------~~~e~~~gHIpgAi~~~~~-----------------~l~~~l~~l~--~~~~vV 53 (145)
T cd01535 2 LAAWLGEGGQTAVVDVT---------ASANYVKRHIPGAWWVLRA-----------------QLAQALEKLP--AAERYV 53 (145)
T ss_pred hHHHHhCCCCeEEEECC---------CHHHHHcCCCCCceeCCHH-----------------HHHHHHHhcC--CCCCEE
Confidence 45555443 58999999 7789999999999999754 4555666653 568899
Q ss_pred EEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCcccCC
Q 020963 108 VYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 153 (319)
Q Consensus 108 ly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 153 (319)
|||.++. .+..+++.|+..|+++|++|+||+.+|.+.|+|+++..
T Consensus 54 v~c~~g~-~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~ 98 (145)
T cd01535 54 LTCGSSL-LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGE 98 (145)
T ss_pred EEeCCCh-HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCC
Confidence 9998764 58889999999999999999999999999999998764
No 71
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.69 E-value=6.2e-17 Score=127.36 Aligned_cols=99 Identities=25% Similarity=0.371 Sum_probs=78.4
Q ss_pred ccCHHHHHHHhhc--CCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 020963 191 IWTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 268 (319)
Q Consensus 191 ~is~~~l~~~~~~--~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 268 (319)
.|+++++.+.+.. ++++|||||+. || ..||||||+|+|+..+.. .+.++....++++
T Consensus 3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~-----------~~~hi~gA~~ip~~~l~~---------~~~~~~~~~~~~~ 61 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQVVDVRDE-DY-----------AGGHIKGSWHYPSTRFKA---------QLNQLVQLLSGSK 61 (113)
T ss_pred cCCHHHHHHHHHcCCCCEEEEEcCCc-cc-----------CCCcCCCCEecCHHHHhh---------CHHHHHHHHhcCC
Confidence 5788999998866 45789999999 99 689999999999987542 2333333345678
Q ss_pred CCCEEEecC-CcHHHHHHHHHHHh--------cCCCCceeeeCcHHHHhCC
Q 020963 269 EKPVVTACG-TGVTACILALGLNR--------LGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 269 ~~~vivyC~-~G~ra~~~~~~L~~--------~G~~~v~~~~Gg~~~W~~~ 310 (319)
+++||+||. +|.|+..++..|.. .|+.+|++++||+.+|...
T Consensus 62 ~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 62 KDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred CCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 899999998 77888877766533 4999999999999999864
No 72
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.69 E-value=4.7e-17 Score=121.59 Aligned_cols=86 Identities=23% Similarity=0.471 Sum_probs=73.9
Q ss_pred HHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEecCC
Q 020963 199 RNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGT 278 (319)
Q Consensus 199 ~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~vivyC~~ 278 (319)
+.+..++..|||+|++.+| ..||||||+|+|+..+... ....+++++++||+||..
T Consensus 4 ~~~~~~~~~iiD~R~~~~~-----------~~~~i~ga~~~~~~~~~~~-------------~~~~~~~~~~~vv~~c~~ 59 (89)
T cd00158 4 ELLDDEDAVLLDVREPEEY-----------AAGHIPGAINIPLSELEER-------------AALLELDKDKPIVVYCRS 59 (89)
T ss_pred HHhcCCCeEEEECCCHHHH-----------hccccCCCEecchHHHhhH-------------HHhhccCCCCeEEEEeCC
Confidence 3444567999999999999 6799999999999775432 123377899999999999
Q ss_pred cHHHHHHHHHHHhcCCCCceeeeCcHHHHh
Q 020963 279 GVTACILALGLNRLGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 279 G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~ 308 (319)
|.+|..++..|+.+|+.++++|+||+.+|.
T Consensus 60 ~~~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 60 GNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred CchHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 999999999999999999999999999995
No 73
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.68 E-value=9.4e-17 Score=121.62 Aligned_cols=84 Identities=25% Similarity=0.367 Sum_probs=68.9
Q ss_pred hhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCC-CCCCCEEEecCCc
Q 020963 201 IEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGI-SLEKPVVTACGTG 279 (319)
Q Consensus 201 ~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~-~~~~~vivyC~~G 279 (319)
+++++++|||+|++.+| ..||||||+|+|...+... ... .+ +++++||+||.+|
T Consensus 6 ~~~~~~~liDvR~~~e~-----------~~~hi~ga~~ip~~~~~~~------------~~~--~~~~~~~~ivl~c~~G 60 (92)
T cd01532 6 LAREEIALIDVREEDPF-----------AQSHPLWAANLPLSRLELD------------AWV--RIPRRDTPIVVYGEGG 60 (92)
T ss_pred hcCCCeEEEECCCHHHH-----------hhCCcccCeeCCHHHHHhh------------hHh--hCCCCCCeEEEEeCCC
Confidence 44567999999999999 6899999999998664311 111 23 3588999999998
Q ss_pred HH--HHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 280 VT--ACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 280 ~r--a~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
.+ |..+++.|+.+||++|++++||+.+|..
T Consensus 61 ~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 61 GEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 76 6789999999999999999999999974
No 74
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.68 E-value=8.5e-17 Score=124.27 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=70.4
Q ss_pred CCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEecCCcHHHH
Q 020963 204 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTGVTAC 283 (319)
Q Consensus 204 ~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~vivyC~~G~ra~ 283 (319)
..-.|||+|+++|| +.||||||+|+|+.+ +.+.+...+.+++++||+||.+|.+|.
T Consensus 19 ~~~~lIDvR~~~ef-----------~~ghIpGAiniP~~~-------------l~~~l~~l~~~~~~~IVlyC~~G~rS~ 74 (104)
T PRK10287 19 AAEHWIDVRVPEQY-----------QQEHVQGAINIPLKE-------------VKERIATAVPDKNDTVKLYCNAGRQSG 74 (104)
T ss_pred CCCEEEECCCHHHH-----------hcCCCCccEECCHHH-------------HHHHHHhcCCCCCCeEEEEeCCChHHH
Confidence 45669999999999 689999999999854 445566666778899999999999999
Q ss_pred HHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 284 ILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 284 ~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
.++..|..+||+++.+ .||+.+|.-
T Consensus 75 ~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 75 QAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred HHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 9999999999999987 699999964
No 75
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.4e-16 Score=124.21 Aligned_cols=97 Identities=25% Similarity=0.460 Sum_probs=81.9
Q ss_pred HHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCC-CcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEe
Q 020963 197 VKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPG-SKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTA 275 (319)
Q Consensus 197 l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpg-A~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~vivy 275 (319)
.......++.+|||||++.|| ..+|||+ ++|+|..++....... .+++++++|||
T Consensus 12 ~~~~~~~~~~~liDvR~~~e~-----------~~~~i~~~~~~ip~~~~~~~~~~~-------------~~~~~~~ivv~ 67 (110)
T COG0607 12 AALLLAGEDAVLLDVREPEEY-----------ERGHIPGAAINIPLSELKAAENLL-------------ELPDDDPIVVY 67 (110)
T ss_pred HHHhhccCCCEEEeccChhHh-----------hhcCCCcceeeeecccchhhhccc-------------ccCCCCeEEEE
Confidence 334444567999999999999 6899999 9999999876543210 15789999999
Q ss_pred cCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccC
Q 020963 276 CGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318 (319)
Q Consensus 276 C~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~ 318 (319)
|.+|.||..++..|+.+||.+++.++||+.+|...+ +|++.+
T Consensus 68 C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~-~~~~~~ 109 (110)
T COG0607 68 CASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAG-LPLVRG 109 (110)
T ss_pred eCCCCChHHHHHHHHHcCCccccccCCcHHHHHhcC-CCcccC
Confidence 999999999999999999998889999999999995 888764
No 76
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.67 E-value=2e-16 Score=124.47 Aligned_cols=99 Identities=21% Similarity=0.348 Sum_probs=72.4
Q ss_pred CcccHHHHHHhcCCC------CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHH
Q 020963 22 PVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 95 (319)
Q Consensus 22 ~~Is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (319)
+.|++++|.++++++ +++||||| +. +|..||||||+|+|+..+.. .+.+.+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR---------~~-ef~~ghipgAi~ip~~~~~~-------------~~~~~~ 58 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLR---------RD-DYEGGHIKGSINLPAQSCYQ-------------TLPQVY 58 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECC---------ch-hcCCCcccCceecchhHHHH-------------HHHHHH
Confidence 468999999999874 58999998 66 99999999999999876532 222333
Q ss_pred HhCCCCCCCeEEEEcCCCcchhHHHHHHHH----HhcC--CceEEecCCHHHHH
Q 020963 96 SALGLENKDGLVVYDGKGIFSAARVWWMFR----VFGH--DRVWVLDGGLPRWR 143 (319)
Q Consensus 96 ~~~~i~~~~~vvly~~~g~~~a~~~~~~l~----~~G~--~~v~~l~GG~~~W~ 143 (319)
..+...+..+||+||..++.++.+++..|. ..|+ .++++|+||+.+|.
T Consensus 59 ~~~~~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 59 ALFSLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HHhhhcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 333334567899999865434556553333 3475 68999999999995
No 77
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.67 E-value=3.4e-16 Score=118.53 Aligned_cols=87 Identities=23% Similarity=0.290 Sum_probs=68.5
Q ss_pred hcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCCCeEEEEcC
Q 020963 32 NLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 111 (319)
Q Consensus 32 ~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvly~~ 111 (319)
++++++++|||+| +..+|..+|||||+|+|+..+... ....+ .+++++|||||.
T Consensus 5 ~~~~~~~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~----------------~~~~~-~~~~~~ivl~c~ 58 (92)
T cd01532 5 LLAREEIALIDVR---------EEDPFAQSHPLWAANLPLSRLELD----------------AWVRI-PRRDTPIVVYGE 58 (92)
T ss_pred hhcCCCeEEEECC---------CHHHHhhCCcccCeeCCHHHHHhh----------------hHhhC-CCCCCeEEEEeC
Confidence 4455679999999 789999999999999998654210 11111 235789999998
Q ss_pred CCcch-hHHHHHHHHHhcCCceEEecCCHHHHHh
Q 020963 112 KGIFS-AARVWWMFRVFGHDRVWVLDGGLPRWRA 144 (319)
Q Consensus 112 ~g~~~-a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 144 (319)
+|.+. +.++++.|+..||++|++|+||+.+|.+
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 87543 6789999999999999999999999974
No 78
>PRK01415 hypothetical protein; Validated
Probab=99.66 E-value=2e-16 Score=139.62 Aligned_cols=102 Identities=11% Similarity=0.111 Sum_probs=87.2
Q ss_pred CccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHH-HcCC
Q 020963 188 PHLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFE-QEGI 266 (319)
Q Consensus 188 ~~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~-~~~~ 266 (319)
....|+++++.+.+++++++|||||++.|| ..||||||+|+|...+.. +.+++. ...+
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E~-----------~~Ghi~gAinip~~~f~e----------~~~~~~~~~~~ 168 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYEV-----------EVGTFKSAINPNTKTFKQ----------FPAWVQQNQEL 168 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHHH-----------hcCCcCCCCCCChHHHhh----------hHHHHhhhhhh
Confidence 345799999999998888999999999999 689999999999876532 222221 1256
Q ss_pred CCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCC
Q 020963 267 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 267 ~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~ 310 (319)
+++++|++||.+|.||..++..|+..||++|+.|.||+..|...
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~ 212 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQYLED 212 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHHHHHh
Confidence 78999999999999999999999999999999999999999976
No 79
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.65 E-value=5.3e-16 Score=115.87 Aligned_cols=88 Identities=31% Similarity=0.539 Sum_probs=72.7
Q ss_pred HHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCCCeEEE
Q 020963 29 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVV 108 (319)
Q Consensus 29 l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvl 108 (319)
+.+++++++.+|||+| +..+|..+|||||+|+|+..+.. .....+++++++|||
T Consensus 2 ~~~~~~~~~~~iiD~R---------~~~~~~~~~i~ga~~~~~~~~~~-----------------~~~~~~~~~~~~vv~ 55 (89)
T cd00158 2 LKELLDDEDAVLLDVR---------EPEEYAAGHIPGAINIPLSELEE-----------------RAALLELDKDKPIVV 55 (89)
T ss_pred hHHHhcCCCeEEEECC---------CHHHHhccccCCCEecchHHHhh-----------------HHHhhccCCCCeEEE
Confidence 4555666689999999 77899999999999999875422 113446788999999
Q ss_pred EcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHH
Q 020963 109 YDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 143 (319)
Q Consensus 109 y~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~ 143 (319)
||..+. .+..+++.|+.+||.+|++|+||+.+|.
T Consensus 56 ~c~~~~-~a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 56 YCRSGN-RSARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EeCCCc-hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence 998764 5899999999999999999999999994
No 80
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.64 E-value=5.4e-16 Score=121.98 Aligned_cols=98 Identities=18% Similarity=0.311 Sum_probs=73.2
Q ss_pred ccCHHHHHHHhhcC------CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHc
Q 020963 191 IWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE 264 (319)
Q Consensus 191 ~is~~~l~~~~~~~------~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~ 264 (319)
.++++++.+.+..+ +++|||||++ || ..||||||+|+|+..+.. .+.+.+...
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef-----------~~ghipgAi~ip~~~~~~---------~~~~~~~~~ 61 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DY-----------EGGHIKGSINLPAQSCYQ---------TLPQVYALF 61 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECCch-hc-----------CCCcccCceecchhHHHH---------HHHHHHHHh
Confidence 57889999988764 5889999999 99 579999999999977532 222333322
Q ss_pred CCCCCCCEEEecCC-cHHHHHHHHHH----HhcCC--CCceeeeCcHHHHhC
Q 020963 265 GISLEKPVVTACGT-GVTACILALGL----NRLGK--HDVAVYDGSWTEWGA 309 (319)
Q Consensus 265 ~~~~~~~vivyC~~-G~ra~~~~~~L----~~~G~--~~v~~~~Gg~~~W~~ 309 (319)
...+.++||+||.+ |.||..++..| +..|+ .++++++||+.+|.+
T Consensus 62 ~~~~~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~~ 113 (113)
T cd01443 62 SLAGVKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWYH 113 (113)
T ss_pred hhcCCCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhcC
Confidence 33456799999996 67877766443 34575 689999999999963
No 81
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.62 E-value=1.7e-15 Score=139.33 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=85.1
Q ss_pred CCCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHH-Hh
Q 020963 19 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV-SA 97 (319)
Q Consensus 19 ~~~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~-~~ 97 (319)
.....|+++++.+++++++++||||| +..+|..||||||+|+|+..+.. |...+ ..
T Consensus 109 ~~~~~is~~el~~~l~~~~~vlIDVR---------~~~E~~~GhI~GAi~ip~~~~~~--------------~~~~l~~~ 165 (314)
T PRK00142 109 NVGTYLKPKEVNELLDDPDVVFIDMR---------NDYEYEIGHFENAIEPDIETFRE--------------FPPWVEEN 165 (314)
T ss_pred cCCcccCHHHHHHHhcCCCeEEEECC---------CHHHHhcCcCCCCEeCCHHHhhh--------------hHHHHHHh
Confidence 44578999999999988889999999 67899999999999999876533 11112 23
Q ss_pred CCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhC
Q 020963 98 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 145 (319)
Q Consensus 98 ~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~ 145 (319)
+++.++++||+||.+|.+ +..++..|+..||++|+.|+||+.+|...
T Consensus 166 ~~~~kdk~IvvyC~~G~R-s~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 166 LDPLKDKKVVMYCTGGIR-CEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred cCCCCcCeEEEECCCCcH-HHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 456688999999988775 77788889999999999999999999864
No 82
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.61 E-value=1.3e-15 Score=123.12 Aligned_cols=109 Identities=27% Similarity=0.393 Sum_probs=78.7
Q ss_pred cccHHHHHHhcCC--CCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccC---CC--CCCCCCCHHHHHHHH
Q 020963 23 VVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT---TN--LPHMLPSEEAFAAAV 95 (319)
Q Consensus 23 ~Is~~~l~~~l~~--~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~---~~--~~~~~~~~~~~~~~~ 95 (319)
+|++++|.++++. .+++||||| +..+|..||||||+|+|+..+.... .. ...++++.+.+.++
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR---------~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 70 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCR---------PFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRL- 70 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECC---------CHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHH-
Confidence 5899999999975 479999999 7889999999999999987533211 00 11134455544443
Q ss_pred HhCCCCCCCeEEEEcCCCc-----chhHHHHHHHHHhcC-----CceEEecCCHHHHHh
Q 020963 96 SALGLENKDGLVVYDGKGI-----FSAARVWWMFRVFGH-----DRVWVLDGGLPRWRA 144 (319)
Q Consensus 96 ~~~~i~~~~~vvly~~~g~-----~~a~~~~~~l~~~G~-----~~v~~l~GG~~~W~~ 144 (319)
... ++++|||||..+. ..+++++++++.++. .+|++|+||+.+|++
T Consensus 71 ~~~---~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 71 RRG---ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred hcC---CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 222 6789999997664 235566666666665 689999999999975
No 83
>PRK01415 hypothetical protein; Validated
Probab=99.60 E-value=2.3e-15 Score=132.92 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=84.8
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHH-hC
Q 020963 20 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS-AL 98 (319)
Q Consensus 20 ~~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 98 (319)
....|+|+++.+++++++++||||| ...||..||||||+|+|...+.. |.+.+. ..
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVR---------n~~E~~~Ghi~gAinip~~~f~e--------------~~~~~~~~~ 166 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTR---------NDYEVEVGTFKSAINPNTKTFKQ--------------FPAWVQQNQ 166 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECC---------CHHHHhcCCcCCCCCCChHHHhh--------------hHHHHhhhh
Confidence 4678999999999998889999999 68899999999999999875532 111111 12
Q ss_pred CCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCC
Q 020963 99 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 146 (319)
Q Consensus 99 ~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 146 (319)
.+.++++|++||.+|.+ +..++..|+..||++|+.|.||+.+|.+..
T Consensus 167 ~~~k~k~Iv~yCtgGiR-s~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 167 ELLKGKKIAMVCTGGIR-CEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hhcCCCeEEEECCCChH-HHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 35688999999987765 888899999999999999999999998754
No 84
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.60 E-value=1.3e-15 Score=144.64 Aligned_cols=100 Identities=23% Similarity=0.440 Sum_probs=86.1
Q ss_pred CccccCHHHHHHHhhcC-CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCC
Q 020963 188 PHLIWTLEQVKRNIEEG-TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGI 266 (319)
Q Consensus 188 ~~~~is~~~l~~~~~~~-~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~ 266 (319)
....++++++.+.++.+ +++|||+|+++|| ..||||||+|+|+..+... . .+. .+
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef-----------~~ghIpGAinip~~~l~~~-------~----~~~--~l 340 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVEW-----------DIVHIPGAQLIPKSEILSG-------E----ALA--KL 340 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHHH-----------hcCCCCCCEEcChHHhcch-------h----HHh--hC
Confidence 34579999999988754 5789999999999 6899999999999876431 1 122 56
Q ss_pred CCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCC
Q 020963 267 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQP 311 (319)
Q Consensus 267 ~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~ 311 (319)
+++++||+||++|.||..++..|+..||++|++|+||+.+|....
T Consensus 341 ~~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~ 385 (392)
T PRK07878 341 PQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQV 385 (392)
T ss_pred CCCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcHHHHHHhc
Confidence 889999999999999999999999999999999999999999874
No 85
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.60 E-value=2.3e-15 Score=134.69 Aligned_cols=101 Identities=17% Similarity=0.272 Sum_probs=82.1
Q ss_pred cccCHHHHHHHhhcC------CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHH
Q 020963 190 LIWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 263 (319)
Q Consensus 190 ~~is~~~l~~~~~~~------~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~ 263 (319)
..++++++.+.++.+ +++|||||++.|| ..||||||+|+|...+... ++.+.+.+.
T Consensus 110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~-----------~~Ghi~GAiniPl~~f~~~------~~~l~~~~~- 171 (257)
T PRK05320 110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEV-----------DVGTFDGALDYRIDKFTEF------PEALAAHRA- 171 (257)
T ss_pred ceeCHHHHHHHHhccccccCCCeEEEECCCHHHH-----------ccCccCCCEeCChhHhhhh------HHHHHhhhh-
Confidence 478898888877642 4799999999999 6899999999999776321 112222222
Q ss_pred cCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCC
Q 020963 264 EGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 264 ~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~ 310 (319)
.+ ++++|++||.+|.||..++..|+..||++|+.+.||+..|...
T Consensus 172 -~~-kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 172 -DL-AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred -hc-CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 22 7899999999999999999999999999999999999999875
No 86
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.59 E-value=6.1e-15 Score=113.41 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=66.8
Q ss_pred CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCCCeEEEEcCCCcch
Q 020963 37 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFS 116 (319)
Q Consensus 37 ~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvly~~~g~~~ 116 (319)
...+||+| +.++|..||||||+|+|+.. +...+..+..+++++||+||.+|. +
T Consensus 18 ~~~lIDvR---------~~~ef~~ghIpgAinip~~~-----------------l~~~l~~~~~~~~~~vvlyC~~G~-r 70 (101)
T TIGR02981 18 AEHWIDVR---------IPEQYQQEHIQGAINIPLKE-----------------IKEHIATAVPDKNDTVKLYCNAGR-Q 70 (101)
T ss_pred CCEEEECC---------CHHHHhcCCCCCCEECCHHH-----------------HHHHHHHhCCCCCCeEEEEeCCCH-H
Confidence 56899999 78999999999999999864 333455555677889999998876 4
Q ss_pred hHHHHHHHHHhcCCceEEecCCHHHHHh
Q 020963 117 AARVWWMFRVFGHDRVWVLDGGLPRWRA 144 (319)
Q Consensus 117 a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 144 (319)
+..++..|+.+||++|.++ ||+.+|.-
T Consensus 71 S~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 71 SGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred HHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 8889999999999999986 99999963
No 87
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.58 E-value=8.1e-15 Score=113.22 Aligned_cols=80 Identities=16% Similarity=0.236 Sum_probs=67.6
Q ss_pred CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCCCeEEEEcCCCcch
Q 020963 37 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFS 116 (319)
Q Consensus 37 ~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvly~~~g~~~ 116 (319)
.-+|||+| +..+|..||||||+|+|+. ++.+.+..++.+++++||+||.+|. +
T Consensus 20 ~~~lIDvR---------~~~ef~~ghIpGAiniP~~-----------------~l~~~l~~l~~~~~~~IVlyC~~G~-r 72 (104)
T PRK10287 20 AEHWIDVR---------VPEQYQQEHVQGAINIPLK-----------------EVKERIATAVPDKNDTVKLYCNAGR-Q 72 (104)
T ss_pred CCEEEECC---------CHHHHhcCCCCccEECCHH-----------------HHHHHHHhcCCCCCCeEEEEeCCCh-H
Confidence 45799999 7899999999999999975 3444666777777889999998765 5
Q ss_pred hHHHHHHHHHhcCCceEEecCCHHHHHh
Q 020963 117 AARVWWMFRVFGHDRVWVLDGGLPRWRA 144 (319)
Q Consensus 117 a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 144 (319)
|..++..|..+||++|.+ .||+.+|.-
T Consensus 73 S~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 73 SGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred HHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 888999999999999987 699999974
No 88
>PRK07411 hypothetical protein; Validated
Probab=99.54 E-value=8.6e-15 Score=138.88 Aligned_cols=103 Identities=18% Similarity=0.390 Sum_probs=84.4
Q ss_pred cccCHHHHHHHhhcC--CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCC
Q 020963 190 LIWTLEQVKRNIEEG--TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 267 (319)
Q Consensus 190 ~~is~~~l~~~~~~~--~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~ 267 (319)
..++++++.+.++.+ +++|||||++.|| ..||||||+|||+.++..... .++ +. .++
T Consensus 282 ~~Is~~el~~~l~~~~~~~vlIDVR~~~E~-----------~~ghIpGAiniP~~~l~~~~~----~~~----l~--~l~ 340 (390)
T PRK07411 282 PEMTVTELKALLDSGADDFVLIDVRNPNEY-----------EIARIPGSVLVPLPDIENGPG----VEK----VK--ELL 340 (390)
T ss_pred CccCHHHHHHHHhCCCCCeEEEECCCHHHh-----------ccCcCCCCEEccHHHhhcccc----hHH----Hh--hcC
Confidence 479999999988654 4789999999999 689999999999988754211 122 22 356
Q ss_pred CCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCC
Q 020963 268 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 315 (319)
Q Consensus 268 ~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~ 315 (319)
++++||+||.+|.||..++..|+.+||++ +.++||+.+|..+. .|.
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~-~p~ 386 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEG-TNVKGGITAWSREV-DPS 386 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCe-EEecchHHHHHHhc-CCC
Confidence 78999999999999999999999999985 57999999999885 453
No 89
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.54 E-value=2.1e-14 Score=128.56 Aligned_cols=101 Identities=25% Similarity=0.321 Sum_probs=79.9
Q ss_pred CCcccHHHHHHhcCCC------CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHH
Q 020963 21 EPVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAA 94 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~ 94 (319)
...|+++++.+++++. +++||||| +..+|..||||||+|+|+..+... ++.+.+.
T Consensus 109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR---------~~~E~~~Ghi~GAiniPl~~f~~~----------~~~l~~~ 169 (257)
T PRK05320 109 APSVDAATLKRWLDQGHDDAGRPVVMLDTR---------NAFEVDVGTFDGALDYRIDKFTEF----------PEALAAH 169 (257)
T ss_pred CceeCHHHHHHHHhccccccCCCeEEEECC---------CHHHHccCccCCCEeCChhHhhhh----------HHHHHhh
Confidence 4689999999988652 48999999 789999999999999998765331 1112211
Q ss_pred HHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHh
Q 020963 95 VSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 144 (319)
Q Consensus 95 ~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~ 144 (319)
... .++++||+||..|.+ +..++..|+..||++|+.|.||+.+|.+
T Consensus 170 ~~~---~kdk~IvvyC~~G~R-s~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 170 RAD---LAGKTVVSFCTGGIR-CEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred hhh---cCCCeEEEECCCCHH-HHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 111 267899999988765 8888899999999999999999999986
No 90
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.54 E-value=2.5e-14 Score=135.91 Aligned_cols=102 Identities=21% Similarity=0.334 Sum_probs=84.3
Q ss_pred CCCCcccHHHHHHhcCCC-CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHh
Q 020963 19 PKEPVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 97 (319)
Q Consensus 19 ~~~~~Is~~~l~~~l~~~-~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (319)
.....|+++++.++++++ +++|||+| +..+|..||||||+|+|+..+... +. +.
T Consensus 284 ~~~~~Is~~el~~~l~~~~~~~lIDvR---------~~~ef~~ghIpGAinip~~~l~~~-----------~~----~~- 338 (392)
T PRK07878 284 AAGSTITPRELKEWLDSGKKIALIDVR---------EPVEWDIVHIPGAQLIPKSEILSG-----------EA----LA- 338 (392)
T ss_pred CCCCccCHHHHHHHHhCCCCeEEEECC---------CHHHHhcCCCCCCEEcChHHhcch-----------hH----Hh-
Confidence 346789999999999764 58999999 789999999999999998765320 01 11
Q ss_pred CCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCC
Q 020963 98 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGY 147 (319)
Q Consensus 98 ~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~ 147 (319)
.++++++||+||..|.+ +..+++.|+..||++|++|+||+.+|.+...
T Consensus 339 -~l~~d~~iVvyC~~G~r-S~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~ 386 (392)
T PRK07878 339 -KLPQDRTIVLYCKTGVR-SAEALAALKKAGFSDAVHLQGGVVAWAKQVD 386 (392)
T ss_pred -hCCCCCcEEEEcCCChH-HHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence 25688999999987764 8999999999999999999999999987754
No 91
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.53 E-value=5.5e-14 Score=109.45 Aligned_cols=99 Identities=28% Similarity=0.459 Sum_probs=79.2
Q ss_pred HHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcC-ceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCCC
Q 020963 26 VDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPG-ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKD 104 (319)
Q Consensus 26 ~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpg-Ai~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 104 (319)
..........++.+||||| ...+|..+|||+ ++|+|...+..... ....++++
T Consensus 9 ~~~~~~~~~~~~~~liDvR---------~~~e~~~~~i~~~~~~ip~~~~~~~~~-----------------~~~~~~~~ 62 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVR---------EPEEYERGHIPGAAINIPLSELKAAEN-----------------LLELPDDD 62 (110)
T ss_pred HHHHHHhhccCCCEEEecc---------ChhHhhhcCCCcceeeeecccchhhhc-----------------ccccCCCC
Confidence 3333444455679999998 568999999999 99999987644210 00046789
Q ss_pred eEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCccc
Q 020963 105 GLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVES 151 (319)
Q Consensus 105 ~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~ 151 (319)
++|+||..|.+ +..++..|+..||+++..+.||+.+|...++++..
T Consensus 63 ~ivv~C~~G~r-S~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~ 108 (110)
T COG0607 63 PIVVYCASGVR-SAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVR 108 (110)
T ss_pred eEEEEeCCCCC-hHHHHHHHHHcCCccccccCCcHHHHHhcCCCccc
Confidence 99999998875 78899999999999888999999999999998765
No 92
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.53 E-value=1.2e-14 Score=117.52 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=76.9
Q ss_pred ccCHHHHHHHhhc--CCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCC---C------CCCCHHHHHH
Q 020963 191 IWTLEQVKRNIEE--GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS---Q------TLLPADELKK 259 (319)
Q Consensus 191 ~is~~~l~~~~~~--~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~---~------~~~~~~~l~~ 259 (319)
.|+++++.+.++. .+++|||+|+..+| ..||||||+|+|+..+.... + .+.+ ++..+
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~-----------~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 68 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCRPFLEY-----------SSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSC-PEDRD 68 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECCCHHHH-----------hhCcccCcEecChHHHHHHhhcccchhhhhhcCC-HHHHH
Confidence 3788999999875 47999999999999 68999999999998744211 1 1222 23334
Q ss_pred HHHHcCCCCCCCEEEecCCcHH---------HHHHHHHHHh--cCCCCceeeeCcHHHHhCC
Q 020963 260 RFEQEGISLEKPVVTACGTGVT---------ACILALGLNR--LGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 260 ~l~~~~~~~~~~vivyC~~G~r---------a~~~~~~L~~--~G~~~v~~~~Gg~~~W~~~ 310 (319)
.+.. . ++++|||||..+.+ +..++..|.. .++.+|++++||+.+|...
T Consensus 69 ~l~~--~-~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 69 RLRR--G-ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred HHhc--C-CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 4442 2 68899999998764 5555555655 3667899999999999875
No 93
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.51 E-value=2.4e-14 Score=134.27 Aligned_cols=95 Identities=21% Similarity=0.382 Sum_probs=79.9
Q ss_pred ccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 020963 189 HLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 268 (319)
Q Consensus 189 ~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 268 (319)
...++.+++.+.. .+.+|||||+++|| ..||||||+|+|+.++.... ....+++
T Consensus 260 ~~~i~~~~~~~~~--~~~~IIDVR~~~ef-----------~~ghIpgAinip~~~l~~~~-------------~~~~~~~ 313 (355)
T PRK05597 260 GEVLDVPRVSALP--DGVTLIDVREPSEF-----------AAYSIPGAHNVPLSAIREGA-------------NPPSVSA 313 (355)
T ss_pred ccccCHHHHHhcc--CCCEEEECCCHHHH-----------ccCcCCCCEEeCHHHhhhcc-------------ccccCCC
Confidence 3477888888554 35889999999999 68999999999998765421 1114678
Q ss_pred CCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhC
Q 020963 269 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 269 ~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~ 309 (319)
+++||+||++|.+|..+++.|+.+||++|++|+||+.+|..
T Consensus 314 ~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 314 GDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 89999999999999999999999999999999999999975
No 94
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.49 E-value=6.8e-14 Score=130.08 Aligned_cols=104 Identities=18% Similarity=0.310 Sum_probs=75.9
Q ss_pred HHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCC---------CC---------CCCCHH
Q 020963 194 LEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA---------SQ---------TLLPAD 255 (319)
Q Consensus 194 ~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~---------~~---------~~~~~~ 255 (319)
.+++.+.+. .+..|||||++.|| ..||||||+|+|+.+.... .+ .+.+ .
T Consensus 5 ~~~~~~~~~-~~~~lIDVRsp~Ef-----------~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~-~ 71 (345)
T PRK11784 5 AQDFRALFL-NDTPLIDVRSPIEF-----------AEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVA-G 71 (345)
T ss_pred HHHHHHHHh-CCCEEEECCCHHHH-----------hcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcc-h
Confidence 455555543 46899999999999 6899999999999543211 01 1122 2
Q ss_pred HHHHHHHHc--CC-CCCCCEEEecC-CcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCC
Q 020963 256 ELKKRFEQE--GI-SLEKPVVTACG-TGVTACILALGLNRLGKHDVAVYDGSWTEWGAQP 311 (319)
Q Consensus 256 ~l~~~l~~~--~~-~~~~~vivyC~-~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~ 311 (319)
.+.+.+.+. .+ +++++||+||. +|.||..+++.|+.+|| ++++++||+.+|...+
T Consensus 72 ~l~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~ 130 (345)
T PRK11784 72 NIAAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFV 130 (345)
T ss_pred hHHHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhh
Confidence 233332221 22 47899999995 78999999999999999 5999999999999864
No 95
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.47 E-value=2.3e-13 Score=120.03 Aligned_cols=125 Identities=19% Similarity=0.277 Sum_probs=102.3
Q ss_pred cccCHHHHHHHhhcCCcEEEeccCCCcccCCC-CCCCCCCCccccCCCcccCcccccCCC----CCCCCHHHHHHHHHHc
Q 020963 190 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDA-PEPRKGIRSGHVPGSKCIPFPQMLDAS----QTLLPADELKKRFEQE 264 (319)
Q Consensus 190 ~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~-~~~~~~~~~ghIpgA~~ip~~~l~~~~----~~~~~~~~l~~~l~~~ 264 (319)
.+++.+|+.+++.+.+.+|||..- |.-.. ..+...+..-|||||.+++++.+.... +.+..++.|.+.++.+
T Consensus 5 ~iv~~~~v~~~~~~~~~~iLDaSw---~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~l 81 (286)
T KOG1529|consen 5 SIVSVKWVMENLGNHGLRILDASW---YFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRL 81 (286)
T ss_pred cccChHHHHHhCcCCCeEEEeeee---ecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhc
Confidence 378999999999888899999871 10000 011222367799999999998886543 4677889999999999
Q ss_pred CCCCCCCEEEecC--CcH-HHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCCccC
Q 020963 265 GISLEKPVVTACG--TGV-TACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPVETS 318 (319)
Q Consensus 265 ~~~~~~~vivyC~--~G~-ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~~~~ 318 (319)
|++++..+|||.+ .|+ .|++++|.++.+|+.+|.+++||+..|+..+ +|+.++
T Consensus 82 Gi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g-~~~~s~ 137 (286)
T KOG1529|consen 82 GVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAG-GPVDSS 137 (286)
T ss_pred CCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcC-Cccccc
Confidence 9999999999998 775 7889999999999999999999999999995 898875
No 96
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.45 E-value=9.7e-14 Score=127.28 Aligned_cols=98 Identities=24% Similarity=0.293 Sum_probs=70.1
Q ss_pred CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCC--CCC-C--C------------HHHHHHHHHHc--C
Q 020963 205 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDAS--QTL-L--P------------ADELKKRFEQE--G 265 (319)
Q Consensus 205 ~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~--~~~-~--~------------~~~l~~~l~~~--~ 265 (319)
...|||||++.|| ..||||||+|+|+....... +++ + + ...|...+... -
T Consensus 2 ~~~liDVRsp~Ef-----------~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~ 70 (311)
T TIGR03167 2 FDPLIDVRSPAEF-----------AEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAF 70 (311)
T ss_pred CCEEEECCCHHHH-----------hcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhh
Confidence 4679999999999 68999999999985422110 110 0 0 01233333321 2
Q ss_pred CCCCCCEEEecC-CcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCCCCCC
Q 020963 266 ISLEKPVVTACG-TGVTACILALGLNRLGKHDVAVYDGSWTEWGAQPDTPV 315 (319)
Q Consensus 266 ~~~~~~vivyC~-~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~~~p~ 315 (319)
.+++..||+||. +|.||..+++.|+.+|| ++++++||+.+|...+ .+.
T Consensus 71 ~~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~-~~~ 119 (311)
T TIGR03167 71 ADGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFV-IDQ 119 (311)
T ss_pred cCCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhh-hhh
Confidence 344555999995 79999999999999999 6999999999999875 443
No 97
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.44 E-value=3e-13 Score=126.87 Aligned_cols=96 Identities=23% Similarity=0.360 Sum_probs=77.8
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCC
Q 020963 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 100 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (319)
...++++++.+... +.+|||+| +..+|..+|||||+|+|+..+... +....+
T Consensus 260 ~~~i~~~~~~~~~~--~~~IIDVR---------~~~ef~~ghIpgAinip~~~l~~~-----------------~~~~~~ 311 (355)
T PRK05597 260 GEVLDVPRVSALPD--GVTLIDVR---------EPSEFAAYSIPGAHNVPLSAIREG-----------------ANPPSV 311 (355)
T ss_pred ccccCHHHHHhccC--CCEEEECC---------CHHHHccCcCCCCEEeCHHHhhhc-----------------cccccC
Confidence 45788999985543 57999999 788999999999999998765331 011135
Q ss_pred CCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhC
Q 020963 101 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 145 (319)
Q Consensus 101 ~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~ 145 (319)
+++++||+||..|. ++.++++.|+.+||++|+.|+||+.+|.++
T Consensus 312 ~~~~~IvvyC~~G~-rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 312 SAGDEVVVYCAAGV-RSAQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred CCCCeEEEEcCCCH-HHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 67889999998776 488999999999999999999999999753
No 98
>PRK07411 hypothetical protein; Validated
Probab=99.44 E-value=3.6e-13 Score=127.83 Aligned_cols=106 Identities=22% Similarity=0.332 Sum_probs=82.9
Q ss_pred CCCCcccHHHHHHhcCCC--CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHH
Q 020963 19 PKEPVVSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS 96 (319)
Q Consensus 19 ~~~~~Is~~~l~~~l~~~--~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (319)
.....|++++|.++++++ +++|||+| +..+|..||||||+|+|+..+.... ..+++.+
T Consensus 279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR---------~~~E~~~ghIpGAiniP~~~l~~~~--------~~~~l~~--- 338 (390)
T PRK07411 279 AEIPEMTVTELKALLDSGADDFVLIDVR---------NPNEYEIARIPGSVLVPLPDIENGP--------GVEKVKE--- 338 (390)
T ss_pred cccCccCHHHHHHHHhCCCCCeEEEECC---------CHHHhccCcCCCCEEccHHHhhccc--------chHHHhh---
Confidence 345689999999998754 58999999 7889999999999999987664310 0112221
Q ss_pred hCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhCCCCc
Q 020963 97 ALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 149 (319)
Q Consensus 97 ~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~ 149 (319)
+.++++||+||..|. +|..+++.|+.+||++ ..|+||+.+|.+...|.
T Consensus 339 ---l~~d~~IVvyC~~G~-RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 339 ---LLNGHRLIAHCKMGG-RSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred ---cCCCCeEEEECCCCH-HHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 346789999998776 4889999999999985 57999999998875543
No 99
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.41 E-value=2.5e-13 Score=127.87 Aligned_cols=94 Identities=17% Similarity=0.258 Sum_probs=76.2
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccC---CCcccCcccccCCCCCCCCHHHHHHHHHHcCCC
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVP---GSKCIPFPQMLDASQTLLPADELKKRFEQEGIS 267 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIp---gA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~ 267 (319)
.++++++.+.+.+++.+|||||++.|| ..|||| ||+|||+..+.... .....+. .++
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E~-----------~~ghI~~~~gAinIPl~~l~~~~-------~~~~~l~--~~~ 331 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHEV-----------LLKDLPEGGASLKLPLSAITDDA-------DILHALS--PID 331 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHHh-----------hhccCCCCCccEeCcHHHhhcch-------hhhhhcc--ccC
Confidence 688999999888777899999999999 689998 69999998874321 0111122 344
Q ss_pred CCCCEEEecCCcHHHHHHHHHHHhcCCCC-ceeeeCcHH
Q 020963 268 LEKPVVTACGTGVTACILALGLNRLGKHD-VAVYDGSWT 305 (319)
Q Consensus 268 ~~~~vivyC~~G~ra~~~~~~L~~~G~~~-v~~~~Gg~~ 305 (319)
++ +|||||.+|.||..++..|+.+||.+ |+++.||+.
T Consensus 332 ~~-~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 332 GD-NVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CC-cEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 44 99999999999999999999999986 899999975
No 100
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.27 E-value=8e-12 Score=117.68 Aligned_cols=95 Identities=22% Similarity=0.328 Sum_probs=74.3
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCc---CceecCcccccccCCCCCCCCCCHHHHHHHHHhC
Q 020963 22 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIP---GALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 98 (319)
Q Consensus 22 ~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIp---gAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (319)
..++++++.+++++++.+||||| +..||..|||| ||+|+|+..+.... .+.+.+.
T Consensus 271 ~~~~~~el~~~l~~~~~~lIDVR---------~~~E~~~ghI~~~~gAinIPl~~l~~~~-----------~~~~~l~-- 328 (370)
T PRK05600 271 ARTDTTSLIDATLNGSATLLDVR---------EPHEVLLKDLPEGGASLKLPLSAITDDA-----------DILHALS-- 328 (370)
T ss_pred cccCHHHHHHHHhcCCeEEEECC---------CHHHhhhccCCCCCccEeCcHHHhhcch-----------hhhhhcc--
Confidence 37899999999988778999999 78999999998 59999988764310 0111111
Q ss_pred CCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCc-eEEecCCHH
Q 020963 99 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLP 140 (319)
Q Consensus 99 ~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~-v~~l~GG~~ 140 (319)
.+++ .+||+||..|.+ +..++..|+..||++ |+.|.||+.
T Consensus 329 ~~~~-~~Ivv~C~sG~R-S~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 329 PIDG-DNVVVYCASGIR-SADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ccCC-CcEEEECCCChh-HHHHHHHHHHcCCCCceEEeccccC
Confidence 2334 489999998875 888999999999986 999999975
No 101
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.13 E-value=6.7e-11 Score=115.43 Aligned_cols=73 Identities=25% Similarity=0.350 Sum_probs=63.4
Q ss_pred CCcEEEeccCCCcccCCCCCCCCCCCccccCC----CcccCcccccCCCCCCCCHHHHHHHHHHcCCCCCCCEEEecCCc
Q 020963 204 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPG----SKCIPFPQMLDASQTLLPADELKKRFEQEGISLEKPVVTACGTG 279 (319)
Q Consensus 204 ~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpg----A~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~vivyC~~G 279 (319)
++.+|||||+++|| ..||||| |+|+|+.++. ..+. .++++++||+||++|
T Consensus 406 ~~~~lIDVR~~~E~-----------~~~hI~g~~~~a~niP~~~l~-------------~~~~--~l~~~~~iivyC~~G 459 (482)
T PRK01269 406 PDDVIIDIRSPDEQ-----------EDKPLKLEGVEVKSLPFYKLS-------------TQFG--DLDQSKTYLLYCDRG 459 (482)
T ss_pred CCCEEEECCCHHHH-----------hcCCCCCCCceEEECCHHHHH-------------HHHh--hcCCCCeEEEECCCC
Confidence 46889999999999 6899999 9999996653 2334 467889999999999
Q ss_pred HHHHHHHHHHHhcCCCCceeeeC
Q 020963 280 VTACILALGLNRLGKHDVAVYDG 302 (319)
Q Consensus 280 ~ra~~~~~~L~~~G~~~v~~~~G 302 (319)
.||..++..|..+||.||++|.+
T Consensus 460 ~rS~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 460 VMSRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred HHHHHHHHHHHHcCCccEEecCC
Confidence 99999999999999999999853
No 102
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.00 E-value=8.4e-10 Score=98.16 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=86.1
Q ss_pred ccccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHH-cCCC
Q 020963 189 HLIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ-EGIS 267 (319)
Q Consensus 189 ~~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~-~~~~ 267 (319)
...+++++..+++.++++++||+|..-|| ..||..||++.+...|.. +.++.++ ...-
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~YE~-----------~iG~F~gAv~p~~~tFre----------fP~~v~~~~~~~ 170 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRNDYEV-----------AIGHFEGAVEPDIETFRE----------FPAWVEENLDLL 170 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcceeE-----------eeeeecCccCCChhhhhh----------hHHHHHHHHHhc
Confidence 45788999999999999999999999999 689999999999888743 2223331 1344
Q ss_pred CCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHHhCCC
Q 020963 268 LEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEWGAQP 311 (319)
Q Consensus 268 ~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~~~~ 311 (319)
++++|+.||..|.|+--+...|...||++|+-|+||...+....
T Consensus 171 ~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~ 214 (308)
T COG1054 171 KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDV 214 (308)
T ss_pred cCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhc
Confidence 57799999999999999999999999999999999999887763
No 103
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=8e-10 Score=99.79 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=73.3
Q ss_pred CCCCcccHHHHHHhcCCC------CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHH
Q 020963 19 PKEPVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFA 92 (319)
Q Consensus 19 ~~~~~Is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~ 92 (319)
..-..||++.|+.+++.. .++||||| -+-+|..|||+||+|++......
T Consensus 153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR---------~pyEY~GGHIkgavnl~~~~~~~---------------- 207 (325)
T KOG3772|consen 153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCR---------YPYEYEGGHIKGAVNLYSKELLQ---------------- 207 (325)
T ss_pred ccccccCHHHHHHHHHhccccceeeEEEEEeC---------CcccccCcccccceecccHhhhh----------------
Confidence 346899999999999752 36799999 34699999999999998765322
Q ss_pred HHHHhCCC----CCCCeEEEEcCCCcchhHHHHHHHHH------------hcCCceEEecCCHHHHHhC
Q 020963 93 AAVSALGL----ENKDGLVVYDGKGIFSAARVWWMFRV------------FGHDRVWVLDGGLPRWRAS 145 (319)
Q Consensus 93 ~~~~~~~i----~~~~~vvly~~~g~~~a~~~~~~l~~------------~G~~~v~~l~GG~~~W~~~ 145 (319)
..+....+ .+...+||||.-...+..++|..|+. +-|..+++|+||+..|-..
T Consensus 208 ~~f~~~~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 208 DFFLLKDGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred hhhccccccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 11111111 13467788997554557788888883 4456899999999998654
No 104
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.91 E-value=1.5e-09 Score=97.96 Aligned_cols=106 Identities=18% Similarity=0.240 Sum_probs=85.2
Q ss_pred cCCccccCHHHHHHHhhc-CCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHc
Q 020963 186 FQPHLIWTLEQVKRNIEE-GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE 264 (319)
Q Consensus 186 ~~~~~~is~~~l~~~~~~-~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~ 264 (319)
+.+...|+..+..+.+++ ...+++|||++-|| ..-|+|+|+|||+.++.+..+ +++...
T Consensus 313 L~~~~Rvsv~d~k~il~~~~~h~llDvRp~~~~-----------eI~~lP~avNIPL~~l~~~~~-----~~~~~~---- 372 (427)
T KOG2017|consen 313 LEPDERVSVTDYKRILDSGAKHLLLDVRPSHEY-----------EICRLPEAVNIPLKELRSRSG-----KKLQGD---- 372 (427)
T ss_pred CChhhcccHHHHHHHHhcCCCeEEEeccCcceE-----------EEEecccccccchhhhhhhhh-----hhhccc----
Confidence 456778999999999876 57999999999999 689999999999999876543 111111
Q ss_pred CCCCCCCEEEecCCcHHHHHHHHHHHhcCC-CCceeeeCcHHHHhCCC
Q 020963 265 GISLEKPVVTACGTGVTACILALGLNRLGK-HDVAVYDGSWTEWGAQP 311 (319)
Q Consensus 265 ~~~~~~~vivyC~~G~ra~~~~~~L~~~G~-~~v~~~~Gg~~~W~~~~ 311 (319)
--+..++|+|.|+.|..|..|.++|+.... .+++...||+.+|...-
T Consensus 373 ~~~~~~~I~ViCrrGNdSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~v 420 (427)
T KOG2017|consen 373 LNTESKDIFVICRRGNDSQRAVRILREKFPDSSVRDVIGGLKAWAAKV 420 (427)
T ss_pred ccccCCCEEEEeCCCCchHHHHHHHHhhCCchhhhhhhhHHHHHHHhc
Confidence 113467899999999999999999997544 57888999999999864
No 105
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=98.90 E-value=1.8e-09 Score=96.01 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=78.6
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCC
Q 020963 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 100 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (319)
...|+|++..+++.++++++||+| ..-||..||..|||+.+...+... ++-+++.. ..
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtR---------N~YE~~iG~F~gAv~p~~~tFref----------P~~v~~~~---~~ 169 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTR---------NDYEVAIGHFEGAVEPDIETFREF----------PAWVEENL---DL 169 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcC---------cceeEeeeeecCccCCChhhhhhh----------HHHHHHHH---Hh
Confidence 568999999999999999999998 567999999999999998776542 11222222 23
Q ss_pred CCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHHhC
Q 020963 101 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 145 (319)
Q Consensus 101 ~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~ 145 (319)
-++++|+.||..|.+ =-++...|+..||++|+-|+||+-.+-+.
T Consensus 170 ~~~KkVvmyCTGGIR-CEKas~~m~~~GF~eVyhL~GGIl~Y~e~ 213 (308)
T COG1054 170 LKDKKVVMYCTGGIR-CEKASAWMKENGFKEVYHLEGGILKYLED 213 (308)
T ss_pred ccCCcEEEEcCCcee-ehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence 366799999998876 34445567778999999999999776543
No 106
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.81 E-value=1.3e-08 Score=99.44 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=62.6
Q ss_pred HHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcC----ceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCC
Q 020963 28 WLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPG----ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 103 (319)
Q Consensus 28 ~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpg----Ai~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 103 (319)
++.+.+.. +.+|||+| +.++|..+|||| |+|+|+..+.. .+.. ++++
T Consensus 399 ~~~~~~~~-~~~lIDVR---------~~~E~~~~hI~g~~~~a~niP~~~l~~-----------------~~~~--l~~~ 449 (482)
T PRK01269 399 ETVSELPP-DDVIIDIR---------SPDEQEDKPLKLEGVEVKSLPFYKLST-----------------QFGD--LDQS 449 (482)
T ss_pred HHHHhcCC-CCEEEECC---------CHHHHhcCCCCCCCceEEECCHHHHHH-----------------HHhh--cCCC
Confidence 34444433 67999999 789999999999 99999875422 2222 4677
Q ss_pred CeEEEEcCCCcchhHHHHHHHHHhcCCceEEecC
Q 020963 104 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 137 (319)
Q Consensus 104 ~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~G 137 (319)
+++|+||..|.+ |..++..|+.+||+||+++.+
T Consensus 450 ~~iivyC~~G~r-S~~aa~~L~~~G~~nv~~y~~ 482 (482)
T PRK01269 450 KTYLLYCDRGVM-SRLQALYLREQGFSNVKVYRP 482 (482)
T ss_pred CeEEEECCCCHH-HHHHHHHHHHcCCccEEecCC
Confidence 899999998875 889999999999999998753
No 107
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.72 E-value=1.5e-08 Score=91.62 Aligned_cols=106 Identities=22% Similarity=0.258 Sum_probs=82.2
Q ss_pred CCCCCCcccHHHHHHhcCC-CCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHH
Q 020963 17 VSPKEPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 95 (319)
Q Consensus 17 ~~~~~~~Is~~~l~~~l~~-~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (319)
+....-.||..++++.+++ ...+++||| |.-+|...|+|+|+|||+..+..... +.+
T Consensus 312 lL~~~~Rvsv~d~k~il~~~~~h~llDvR---------p~~~~eI~~lP~avNIPL~~l~~~~~-------------~~~ 369 (427)
T KOG2017|consen 312 LLEPDERVSVTDYKRILDSGAKHLLLDVR---------PSHEYEICRLPEAVNIPLKELRSRSG-------------KKL 369 (427)
T ss_pred cCChhhcccHHHHHHHHhcCCCeEEEecc---------CcceEEEEecccccccchhhhhhhhh-------------hhh
Confidence 3445678999999999987 579999999 88899999999999999987755311 111
Q ss_pred HhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCC-ceEEecCCHHHHHhC
Q 020963 96 SALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHD-RVWVLDGGLPRWRAS 145 (319)
Q Consensus 96 ~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~-~v~~l~GG~~~W~~~ 145 (319)
+...-....+|++.|+.|.. +.++.|+|+...++ +|+.+-||+.+|...
T Consensus 370 ~~~~~~~~~~I~ViCrrGNd-SQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 370 QGDLNTESKDIFVICRRGND-SQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred cccccccCCCEEEEeCCCCc-hHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 22222345678899998875 89999999987664 677888999999865
No 108
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.71 E-value=2.3e-08 Score=90.51 Aligned_cols=99 Identities=17% Similarity=0.302 Sum_probs=72.9
Q ss_pred cccCHHHHHHHhhcC------CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHH
Q 020963 190 LIWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 263 (319)
Q Consensus 190 ~~is~~~l~~~~~~~------~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~ 263 (319)
..||++.|+.+++.. .++|||+|-+-|| ..|||+||+||+..+..... .+.+
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY-----------~GGHIkgavnl~~~~~~~~~-----------f~~~ 213 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEY-----------EGGHIKGAVNLYSKELLQDF-----------FLLK 213 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeCCcccc-----------cCcccccceecccHhhhhhh-----------hccc
Confidence 489999999888641 3779999999999 57999999999986643211 0011
Q ss_pred cCC---CCCCCEEEecC-CcHHHHHHHHHHHh------------cCCCCceeeeCcHHHHhCC
Q 020963 264 EGI---SLEKPVVTACG-TGVTACILALGLNR------------LGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 264 ~~~---~~~~~vivyC~-~G~ra~~~~~~L~~------------~G~~~v~~~~Gg~~~W~~~ 310 (319)
.+. .....+||||- +-.|...++..|+. +-|..+++|+||+.+|-..
T Consensus 214 ~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 214 DGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred cccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 111 23458999995 66788888888873 4566789999999999765
No 109
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.40 E-value=9.3e-07 Score=79.16 Aligned_cols=101 Identities=19% Similarity=0.197 Sum_probs=77.1
Q ss_pred CCCCcccHHHHHHhcCCC------CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHH
Q 020963 19 PKEPVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFA 92 (319)
Q Consensus 19 ~~~~~Is~~~l~~~l~~~------~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~ 92 (319)
.+-+.|++|.|++.++.. ++.||||| =+-||..|||-.|+||.... ++.
T Consensus 239 Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCR---------FeYEY~GGHIinaVNi~s~~----------------~l~ 293 (427)
T COG5105 239 DSIQRISVETLKQVLEGMYNIDFLKCIIIDCR---------FEYEYRGGHIINAVNISSTK----------------KLG 293 (427)
T ss_pred cchhhcCHHHHHHHHhchhhhhhhceeEEeec---------ceeeecCceeeeeeecchHH----------------HHH
Confidence 456899999999999752 48899999 45799999999999997532 444
Q ss_pred HHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhc------------CCceEEecCCHHHHHh
Q 020963 93 AAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFG------------HDRVWVLDGGLPRWRA 144 (319)
Q Consensus 93 ~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G------------~~~v~~l~GG~~~W~~ 144 (319)
-+|.....+-..-+|++|.-...++.++|..|+.+- |..|++|+||+..+-.
T Consensus 294 ~~F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 294 LLFRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred HHHHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 455544455567788889866667999999888653 4579999999987643
No 110
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=97.68 E-value=0.00013 Score=65.76 Aligned_cols=98 Identities=18% Similarity=0.326 Sum_probs=74.6
Q ss_pred cccCHHHHHHHhhcC------CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHH
Q 020963 190 LIWTLEQVKRNIEEG------TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ 263 (319)
Q Consensus 190 ~~is~~~l~~~~~~~------~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~ 263 (319)
..|+.+-++..++.. +-.|||+|=+-|| ..|||-.||||...+ +|.-.+..
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY-----------~GGHIinaVNi~s~~------------~l~~~F~h 298 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEY-----------RGGHIINAVNISSTK------------KLGLLFRH 298 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeecceeee-----------cCceeeeeeecchHH------------HHHHHHHh
Confidence 588999988888642 3559999988888 679999999998744 33333442
Q ss_pred cCCCCCCCEEEecC-CcHHHHHHHHHHHhcC------------CCCceeeeCcHHHHhCC
Q 020963 264 EGISLEKPVVTACG-TGVTACILALGLNRLG------------KHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 264 ~~~~~~~~vivyC~-~G~ra~~~~~~L~~~G------------~~~v~~~~Gg~~~W~~~ 310 (319)
.-++.-..+|++|. +..||...+..|+.+. |..|++++||+...-..
T Consensus 299 kplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~n 358 (427)
T COG5105 299 KPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYSN 358 (427)
T ss_pred ccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhhc
Confidence 23555678999996 7789999999998642 35789999999876554
No 111
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.74 E-value=0.013 Score=47.23 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=51.1
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCC--cccCcccccCCCCCCCCH---HHHHHHHHHcC
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGS--KCIPFPQMLDASQTLLPA---DELKKRFEQEG 265 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA--~~ip~~~l~~~~~~~~~~---~~l~~~l~~~~ 265 (319)
.++.+++..+.+.+=-.|||.|+..|-.+.-.... ......-+|- +++|+.. +. .++ ..+.+.+.
T Consensus 14 qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~-~~~~a~~~gl~y~~iPv~~-----~~-~~~~~v~~f~~~~~--- 83 (135)
T TIGR01244 14 QLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQ-IKAAAEAAGVTYHHQPVTA-----GD-ITPDDVETFRAAIG--- 83 (135)
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHH-HHHHHHHCCCeEEEeecCC-----CC-CCHHHHHHHHHHHH---
Confidence 56777777665555577999999887532110000 0000000121 2333221 12 233 34444454
Q ss_pred CCCCCCEEEecCCcHHHHHHHHHH-HhcCCC
Q 020963 266 ISLEKPVVTACGTGVTACILALGL-NRLGKH 295 (319)
Q Consensus 266 ~~~~~~vivyC~~G~ra~~~~~~L-~~~G~~ 295 (319)
..++||++||.+|.|++.+|.++ ...|..
T Consensus 84 -~~~~pvL~HC~sG~Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 84 -AAEGPVLAYCRSGTRSSLLWGFRQAAEGVP 113 (135)
T ss_pred -hCCCCEEEEcCCChHHHHHHHHHHHHcCCC
Confidence 24689999999999999887653 345653
No 112
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.65 E-value=0.011 Score=45.99 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=42.5
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCC---CCCCCccccCCCcccCcccccCCCCCCCCH---HHHHHHHHHc
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEP---RKGIRSGHVPGSKCIPFPQMLDASQTLLPA---DELKKRFEQE 264 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~---~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~---~~l~~~l~~~ 264 (319)
.++.+++.++.+.+=-.||+.|+..|-.+.-... ..+...| -.-+|+|... +. .+. +.|.+.|.
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~G--l~y~~iPv~~-----~~-~~~~~v~~f~~~l~-- 83 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALG--LQYVHIPVDG-----GA-ITEEDVEAFADALE-- 83 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT---EEEE----T-----TT---HHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcC--CeEEEeecCC-----CC-CCHHHHHHHHHHHH--
Confidence 6788999988887767899999887632110000 0000000 0123444432 11 223 44445555
Q ss_pred CCCCCCCEEEecCCcHHHHHHHHHHH
Q 020963 265 GISLEKPVVTACGTGVTACILALGLN 290 (319)
Q Consensus 265 ~~~~~~~vivyC~~G~ra~~~~~~L~ 290 (319)
. ..+||++||.+|.||+..|.+-+
T Consensus 84 ~--~~~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 84 S--LPKPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp T--TTTSEEEE-SCSHHHHHHHHHHH
T ss_pred h--CCCCEEEECCCChhHHHHHHHHh
Confidence 2 24699999999999988777654
No 113
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.64 E-value=0.0041 Score=55.72 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=79.5
Q ss_pred HHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCccccccc----CCCCCCCCCCHHHHHHH----------
Q 020963 29 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR----TTNLPHMLPSEEAFAAA---------- 94 (319)
Q Consensus 29 l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~----~~~~~~~~~~~~~~~~~---------- 94 (319)
..+.+......+|||| .+-+|..||.|+++|+|...=... ..+.....+....+...
T Consensus 7 ~~~~~~~~~~~lid~r---------ap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~ 77 (334)
T COG2603 7 DYRALLLADTPLIDVR---------APIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQR 77 (334)
T ss_pred HHHHHHhcCCceeecc---------chHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHH
Confidence 3333333368999999 778999999999999997421000 00011011111111000
Q ss_pred HHh-CCCCCCCeEEEEcCCCcchhHHHHHHH-HHhcCCceEEecCCHHHHHhCCCCcccCCCcchhhhhhhhHHHHHHHh
Q 020963 95 VSA-LGLENKDGLVVYDGKGIFSAARVWWMF-RVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVY 172 (319)
Q Consensus 95 ~~~-~~i~~~~~vvly~~~g~~~a~~~~~~l-~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~ 172 (319)
+.. .....+.++-++|..|+.++...+..| +..|.+ .--+.||+.+...
T Consensus 78 l~ask~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalrt---------------------------- 128 (334)
T COG2603 78 LEASKAFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALRT---------------------------- 128 (334)
T ss_pred HHHHHHHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHHH----------------------------
Confidence 000 001123445555766666566655556 666664 4445666655331
Q ss_pred cCcccCCcccccccCCccccCHHHHHHHhhcCCcEEEe-ccCCCcccCCCCCCCCCCCccccCCCcccCc
Q 020963 173 QGQVVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVD-ARSKARFDGDAPEPRKGIRSGHVPGSKCIPF 241 (319)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~is~~~l~~~~~~~~~~liD-vR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~ 241 (319)
.........+..+.+++++ ++.+..+ .-...|+|+|++.
T Consensus 129 -------------------~~~~a~~~~i~~k~~il~g~Tgcgkt~-----------lve~lp~aidlE~ 168 (334)
T COG2603 129 -------------------FAIQATIKEIAQKDFILCGCTGCGKTE-----------LVEQLPNAIDLEG 168 (334)
T ss_pred -------------------HHHHHHHHHhccCCEEEeCCCCCcHHH-----------HHHhCCCccCcHh
Confidence 1122344455556789999 7877777 5678899988873
No 114
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.07 E-value=0.005 Score=54.41 Aligned_cols=107 Identities=18% Similarity=0.257 Sum_probs=64.3
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccc-----cccCCCCCCCCCCHHHHHHHHH
Q 020963 22 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGV-----ADRTTNLPHMLPSEEAFAAAVS 96 (319)
Q Consensus 22 ~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l-----~~~~~~~~~~~~~~~~~~~~~~ 96 (319)
..+|.+||.+.+..++++++||| + ...||.+|+|+-+.-+ ....-.++.++|........-.
T Consensus 4 ~~~s~~wlnr~l~~~nllllDCR---------s----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~ 70 (343)
T KOG1717|consen 4 ISKSVAWLNRQLELGNLLLLDCR---------S----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPA 70 (343)
T ss_pred HHHHHHHHHhhcccCceEEEecC---------C----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccc
Confidence 35789999999998899999998 4 4679999999775432 2222223333443322111100
Q ss_pred hCCCCCCCeEEEEcCCCc------chhHH---HHHHHHHhcCCceEEecCCHHHHHhC
Q 020963 97 ALGLENKDGLVVYDGKGI------FSAAR---VWWMFRVFGHDRVWVLDGGLPRWRAS 145 (319)
Q Consensus 97 ~~~i~~~~~vvly~~~g~------~~a~~---~~~~l~~~G~~~v~~l~GG~~~W~~~ 145 (319)
--+..+||+|+.... ..+.. .-..++..|. .++.|.|||..++.+
T Consensus 71 ---~c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~-~a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 71 ---RCGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGC-SARYLSGGFSKFQAE 124 (343)
T ss_pred ---cCCcceeeecccccccccccchhhhHHHHHHHHHHhcCc-chhhhhcccchhhhh
Confidence 013367889975410 01222 2234555565 588999999887764
No 115
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=94.42 E-value=0.0081 Score=58.47 Aligned_cols=97 Identities=20% Similarity=0.135 Sum_probs=62.7
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhCCC
Q 020963 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 100 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 100 (319)
-+.|+++++..+ +.+.++|.| ...+|..+|+++++|+|+..-.+. +. .|... ....-
T Consensus 621 ~prmsAedl~~~---~~l~v~d~r---------~~~ef~r~~~s~s~nip~~~~ea~---l~-------~~~~l-~~~~~ 677 (725)
T KOG1093|consen 621 CPRISAEDLIWL---KMLYVLDTR---------QESEFQREHFSDSINIPFNNHEAD---LD-------WLRFL-PGIVC 677 (725)
T ss_pred CccccHHHHHHH---HHHHHHhHH---------HHHHHHHhhccccccCCccchHHH---HH-------Hhhcc-hHhHH
Confidence 467888888776 568999999 789999999999999998721111 11 11100 00001
Q ss_pred CCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHH
Q 020963 101 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPR 141 (319)
Q Consensus 101 ~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 141 (319)
.....+++++. +.-.+++....+..+-+.+++++.+|++.
T Consensus 678 ~~~~~~v~~~~-~~K~~~e~~~~~~~mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 678 SEGKKCVVVGK-NDKHAAERLTELYVMKVPRICILHDGFNN 717 (725)
T ss_pred hhCCeEEEecc-chHHHHHHhhHHHHhcccHHHHHHHHHhh
Confidence 13455556643 33345665556666668889999999874
No 116
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=93.58 E-value=0.23 Score=47.33 Aligned_cols=100 Identities=22% Similarity=0.321 Sum_probs=62.4
Q ss_pred cccHHHHHHhcC--CC--CeEEEEeecCCCCCCCCchhhhhhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhC
Q 020963 23 VVSVDWLHANLR--EP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 98 (319)
Q Consensus 23 ~Is~~~l~~~l~--~~--~~~iiDvR~~~~~~~r~~~~~~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (319)
.|++-+|.++-+ .+ ...||||| |.+.|..||+..|.|++..-+ +..+++|+..+..+
T Consensus 308 pisv~el~~~~~~~~~~VrFFiVDcR---------paeqynaGHlstaFhlDc~lm----------lqeP~~Fa~av~sL 368 (669)
T KOG3636|consen 308 PISVIELTSHDEISSGSVRFFIVDCR---------PAEQYNAGHLSTAFHLDCVLM----------LQEPEKFAIAVNSL 368 (669)
T ss_pred chhHHHhhcccccccCceEEEEEecc---------chhhcccccchhhhcccHHHH----------hcCHHHHHHHHHHH
Confidence 355556655432 22 36899999 899999999999999987643 33566776654332
Q ss_pred ------CCCCC-----CeEEEEcCCC-----cchhHHHHHHHHHhcCCceEEecCCHHHHH
Q 020963 99 ------GLENK-----DGLVVYDGKG-----IFSAARVWWMFRVFGHDRVWVLDGGLPRWR 143 (319)
Q Consensus 99 ------~i~~~-----~~vvly~~~g-----~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~ 143 (319)
.|..+ ..+.+.+ +| .+.-..++-.|+ .+-..|+++.||+....
T Consensus 369 l~aqrqtie~~s~aggeHlcfmG-sGr~EED~YmnMviA~FlQ-Knk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 369 LCAQRQTIERDSNAGGEHLCFMG-SGRDEEDNYMNMVIAMFLQ-KNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHHhhhccccCCcceEEEec-cCcchHHHHHHHHHHHHHh-cCceEEEEecchHHHHH
Confidence 33322 3444443 22 222233444444 46668999999998754
No 117
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.74 E-value=0.78 Score=35.93 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=49.6
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccc--cCCCcccCcccccCCCCCCCCHH---HHHHHHHHcC
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGH--VPGSKCIPFPQMLDASQTLLPAD---ELKKRFEQEG 265 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~gh--IpgA~~ip~~~l~~~~~~~~~~~---~l~~~l~~~~ 265 (319)
.++++++......+=..||--|+..|=.|.-.........+| +. -.+||..- .=..++ .+++.+.
T Consensus 15 Qi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~------~~iT~~dV~~f~~Al~--- 84 (130)
T COG3453 15 QISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTG------GGITEADVEAFQRALD--- 84 (130)
T ss_pred CCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCC------CCCCHHHHHHHHHHHH---
Confidence 677888887766655679999987764332110000000000 01 11233211 112233 3444444
Q ss_pred CCCCCCEEEecCCcHHHHHHHHHHHh
Q 020963 266 ISLEKPVVTACGTGVTACILALGLNR 291 (319)
Q Consensus 266 ~~~~~~vivyC~~G~ra~~~~~~L~~ 291 (319)
..+.||+.||++|.||...|.+-..
T Consensus 85 -eaegPVlayCrsGtRs~~ly~~~~~ 109 (130)
T COG3453 85 -EAEGPVLAYCRSGTRSLNLYGLGEL 109 (130)
T ss_pred -HhCCCEEeeecCCchHHHHHHHHHH
Confidence 3467999999999999988876543
No 118
>COG2603 Predicted ATPase [General function prediction only]
Probab=88.65 E-value=0.58 Score=42.33 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=55.6
Q ss_pred CCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCccc------ccCCCCC-CCCH----------HHHH-HHHH-Hc
Q 020963 204 GTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQ------MLDASQT-LLPA----------DELK-KRFE-QE 264 (319)
Q Consensus 204 ~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~------l~~~~~~-~~~~----------~~l~-~~l~-~~ 264 (319)
.+..|||||.+.+| ..|+.|+++|+|.-. +.....+ ..+. .++. .+|+ ..
T Consensus 14 ~~~~lid~rap~ef-----------~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask 82 (334)
T COG2603 14 ADTPLIDVRAPIEF-----------ENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASK 82 (334)
T ss_pred cCCceeeccchHHH-----------hcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 36789999999999 699999999999622 1111111 1111 1111 1111 01
Q ss_pred CCCCCCCEEEecC-CcHHHHHHHHHH-HhcCCCCceeeeCcHHHH
Q 020963 265 GISLEKPVVTACG-TGVTACILALGL-NRLGKHDVAVYDGSWTEW 307 (319)
Q Consensus 265 ~~~~~~~vivyC~-~G~ra~~~~~~L-~~~G~~~v~~~~Gg~~~W 307 (319)
..--+.|+-++|. .|.|+-..+..| ...|.+ +--.-||....
T Consensus 83 ~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKal 126 (334)
T COG2603 83 AFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKAL 126 (334)
T ss_pred HHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHH
Confidence 2223566777796 678999988888 667876 43444776553
No 119
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=87.21 E-value=3.2 Score=33.26 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=53.5
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCC--chh-hh----hhcCCcCceecCcccccccCCCCCCCCCCHHHHHHH
Q 020963 22 PVVSVDWLHANLREPDLKVLDASWYMPDEQRN--PFQ-EY----QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAA 94 (319)
Q Consensus 22 ~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~--~~~-~~----~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~ 94 (319)
..++++++..+.+.+=-.|||.|. ..|+. +.. .. ....+. -+++|+.. . . ........|.+.
T Consensus 13 ~qlt~~d~~~L~~~GiktVIdlR~---~~E~~~~p~~~~~~~~a~~~gl~-y~~iPv~~--~---~--~~~~~v~~f~~~ 81 (135)
T TIGR01244 13 PQLTKADAAQAAQLGFKTVINNRP---DREEESQPDFAQIKAAAEAAGVT-YHHQPVTA--G---D--ITPDDVETFRAA 81 (135)
T ss_pred CCCCHHHHHHHHHCCCcEEEECCC---CCCCCCCCCHHHHHHHHHHCCCe-EEEeecCC--C---C--CCHHHHHHHHHH
Confidence 567888888765554468999991 11111 100 00 001111 24555431 0 0 011124456656
Q ss_pred HHhCCCCCCCeEEEEcCCCcchhHHHHHH-HHHhcCCceEEecCCHHHHHhCCCCcc
Q 020963 95 VSALGLENKDGLVVYDGKGIFSAARVWWM-FRVFGHDRVWVLDGGLPRWRASGYDVE 150 (319)
Q Consensus 95 ~~~~~i~~~~~vvly~~~g~~~a~~~~~~-l~~~G~~~v~~l~GG~~~W~~~g~p~~ 150 (319)
+.. .+.+|++||.+|.+ +..++.+ +...|.+.-.++.- -++.|+.++
T Consensus 82 ~~~----~~~pvL~HC~sG~R-t~~l~al~~~~~g~~~~~i~~~----~~~~G~~~~ 129 (135)
T TIGR01244 82 IGA----AEGPVLAYCRSGTR-SSLLWGFRQAAEGVPVEEIVRR----AQAAGYDLS 129 (135)
T ss_pred HHh----CCCCEEEEcCCChH-HHHHHHHHHHHcCCCHHHHHHH----HHHcCCCcc
Confidence 653 35889999998884 5554433 33346543223332 144555554
No 120
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=87.08 E-value=1.4 Score=34.15 Aligned_cols=90 Identities=19% Similarity=0.059 Sum_probs=39.0
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhh---hhcCCcCceecCcccccccCCCCCCCCCCHHHHHHHHHhC
Q 020963 22 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY---QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 98 (319)
Q Consensus 22 ~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~---~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (319)
..|+++++.++.+.+=-.||+.|.+.-.+......+. ...+==.-+++|+..- . ......+.|.+.+...
T Consensus 13 ~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~-~------~~~~~v~~f~~~l~~~ 85 (110)
T PF04273_consen 13 GQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG-A------ITEEDVEAFADALESL 85 (110)
T ss_dssp CS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT-T--------HHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC-C------CCHHHHHHHHHHHHhC
Confidence 4789999998888755689999922100000000000 0011011346665421 0 0112344566666553
Q ss_pred CCCCCCeEEEEcCCCcchhHHHHHH
Q 020963 99 GLENKDGLVVYDGKGIFSAARVWWM 123 (319)
Q Consensus 99 ~i~~~~~vvly~~~g~~~a~~~~~~ 123 (319)
.+||++||.+|.+ +..+|.+
T Consensus 86 ----~~Pvl~hC~sG~R-a~~l~~l 105 (110)
T PF04273_consen 86 ----PKPVLAHCRSGTR-ASALWAL 105 (110)
T ss_dssp ----TTSEEEE-SCSHH-HHHHHHH
T ss_pred ----CCCEEEECCCChh-HHHHHHH
Confidence 3689999998875 5555443
No 121
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=83.81 E-value=3 Score=37.35 Aligned_cols=99 Identities=19% Similarity=0.309 Sum_probs=59.2
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCC---CCCCCCHHHHHHHHH---Hc
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA---SQTLLPADELKKRFE---QE 264 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~---~~~~~~~~~l~~~l~---~~ 264 (319)
.++.+|+.+.+..++++++|+|+. ..||.+|+++-+.-+..+ .+.+. +++.+- ..
T Consensus 5 ~~s~~wlnr~l~~~nllllDCRse---------------s~~i~~A~~valPalmlrrl~~g~l~----~ra~~p~~~d~ 65 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCRSE---------------SSHIESAINVALPALMLRRLTGGNLP----VRALFPRSCDD 65 (343)
T ss_pred HHHHHHHHhhcccCceEEEecCCc---------------cchhhhhhhhcchHHHHHHHhCCCCc----ceeccCCcccc
Confidence 467899999998889999999972 468888887655443211 01100 000000 00
Q ss_pred CCC----CCCCEEEecCC--------cHHHHHHH---HHHHhcCCCCceeeeCcHHHHhCC
Q 020963 265 GIS----LEKPVVTACGT--------GVTACILA---LGLNRLGKHDVAVYDGSWTEWGAQ 310 (319)
Q Consensus 265 ~~~----~~~~vivyC~~--------G~ra~~~~---~~L~~~G~~~v~~~~Gg~~~W~~~ 310 (319)
... +..++|.|+.+ |. ++..- +.++..|+. ++.+.||+.....+
T Consensus 66 ~~~~~~c~~v~vilyD~~~~e~e~~~~~-~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 66 KRFPARCGTVTVILYDESSAEWEEETGA-ESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred ccccccCCcceeeecccccccccccchh-hhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 111 23688999875 22 22222 335567876 88899999877664
No 122
>PLN02727 NAD kinase
Probab=82.75 E-value=5.2 Score=42.06 Aligned_cols=88 Identities=25% Similarity=0.168 Sum_probs=46.8
Q ss_pred cccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCC-CCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHcCCCC
Q 020963 190 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPR-KGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQEGISL 268 (319)
Q Consensus 190 ~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~-~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~~~~~ 268 (319)
..++++++..+.+.+=-.||+.|+..|-.+...... .+.+..- -.-+|+|... ....+++++++..+-+.-..
T Consensus 267 gQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~G-L~yVhIPVs~-----~~apt~EqVe~fa~~l~~sl 340 (986)
T PLN02727 267 GQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGK-IEVVKIPVEV-----RTAPSAEQVEKFASLVSDSS 340 (986)
T ss_pred CCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcC-CeEEEeecCC-----CCCCCHHHHHHHHHHHHhhc
Confidence 477889888877665567999999776211110000 0000000 1123444422 12234455555544331135
Q ss_pred CCCEEEecCCcHHHH
Q 020963 269 EKPVVTACGTGVTAC 283 (319)
Q Consensus 269 ~~~vivyC~~G~ra~ 283 (319)
.+||++||.+|.+.+
T Consensus 341 pkPVLvHCKSGarRA 355 (986)
T PLN02727 341 KKPIYLHSKEGVWRT 355 (986)
T ss_pred CCCEEEECCCCCchH
Confidence 799999999998433
No 123
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=82.46 E-value=4.1 Score=32.36 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=21.4
Q ss_pred CCCCCCEEEecCCcH-HHH--HHHHHHHhcCCC
Q 020963 266 ISLEKPVVTACGTGV-TAC--ILALGLNRLGKH 295 (319)
Q Consensus 266 ~~~~~~vivyC~~G~-ra~--~~~~~L~~~G~~ 295 (319)
...+++|+|+|..|. ||. .+++++...|+.
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 456789999999985 655 344556667764
No 124
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=81.88 E-value=4.6 Score=31.92 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=18.6
Q ss_pred CCCCEEEecCCcH-HHHH--HHHHHHhcCC
Q 020963 268 LEKPVVTACGTGV-TACI--LALGLNRLGK 294 (319)
Q Consensus 268 ~~~~vivyC~~G~-ra~~--~~~~L~~~G~ 294 (319)
.+++|+|+|..|. ||.. +++++...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999986 6553 3445555555
No 125
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=79.30 E-value=0.36 Score=47.44 Aligned_cols=94 Identities=18% Similarity=0.183 Sum_probs=60.9
Q ss_pred cccCHHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHHc-CC--
Q 020963 190 LIWTLEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQE-GI-- 266 (319)
Q Consensus 190 ~~is~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~~-~~-- 266 (319)
..|+++++..+ +.+.++|.|...|| +.+|+++++|+|++.-. .++. ++... ++
T Consensus 622 prmsAedl~~~---~~l~v~d~r~~~ef-----------~r~~~s~s~nip~~~~e---------a~l~-~~~~l~~~~~ 677 (725)
T KOG1093|consen 622 PRISAEDLIWL---KMLYVLDTRQESEF-----------QREHFSDSINIPFNNHE---------ADLD-WLRFLPGIVC 677 (725)
T ss_pred ccccHHHHHHH---HHHHHHhHHHHHHH-----------HHhhccccccCCccchH---------HHHH-HhhcchHhHH
Confidence 46777777665 45889999999999 78999999999997211 1111 11111 11
Q ss_pred CCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHHH
Q 020963 267 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTEW 307 (319)
Q Consensus 267 ~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W 307 (319)
...+.++++.....-++.-...|..+.+..+.++.+|+...
T Consensus 678 ~~~~~~v~~~~~~K~~~e~~~~~~~mk~p~~cil~~~~~~~ 718 (725)
T KOG1093|consen 678 SEGKKCVVVGKNDKHAAERLTELYVMKVPRICILHDGFNNI 718 (725)
T ss_pred hhCCeEEEeccchHHHHHHhhHHHHhcccHHHHHHHHHhhc
Confidence 13445555555555566555556666677788888888743
No 126
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=74.45 E-value=2.7 Score=34.88 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=25.5
Q ss_pred CCCCCCeEEEEcCCC----cchhHHHHHHHHHhcCCceEEecCCHHH
Q 020963 99 GLENKDGLVVYDGKG----IFSAARVWWMFRVFGHDRVWVLDGGLPR 141 (319)
Q Consensus 99 ~i~~~~~vvly~~~g----~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 141 (319)
|++++..+++++..| +.+...++.+|+.+|..+...||||-..
T Consensus 96 G~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 96 GVTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp EE-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred EEeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcce
Confidence 555666776664332 3457788999999999999999999654
No 127
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=72.14 E-value=8.7 Score=31.70 Aligned_cols=99 Identities=11% Similarity=0.013 Sum_probs=44.2
Q ss_pred CcccHHHHHHhcCCCCeEEEEeecCCCCCCCCchhhhhh---cCCcCce--ecCcccccccC-C----------------
Q 020963 22 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV---AHIPGAL--FFDVDGVADRT-T---------------- 79 (319)
Q Consensus 22 ~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~~~~~~---ghIpgAi--~ip~~~l~~~~-~---------------- 79 (319)
.-+|.+++..+.+-+=-.|||.| ...|... -.++|.. ++|+..-.... .
T Consensus 28 ~~lt~~d~~~L~~lgI~tIiDLR---------s~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (164)
T PF13350_consen 28 SNLTEADLERLRELGIRTIIDLR---------SPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGM 98 (164)
T ss_dssp TT--HHHHHHHHHTT--EEEE-S----------HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHH
T ss_pred CcCCHHHHHHHHhCCCCEEEECC---------CccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHH
Confidence 45788887776643335899998 4555443 2344443 44443211110 0
Q ss_pred ---CCCCCCCCHHHHHHHHHhCCCCCCCeEEEEcCCCcch-hHHHHHHHHHhcCC
Q 020963 80 ---NLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFS-AARVWWMFRVFGHD 130 (319)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~~i~~~~~vvly~~~g~~~-a~~~~~~l~~~G~~ 130 (319)
+........+.|.+.|..+.-.+ .+++++|..|-.+ --.++.+|..+|++
T Consensus 99 ~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 99 LEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 00111223567777776664344 6999999877433 44556677778885
No 128
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=70.89 E-value=3.7 Score=39.39 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=27.5
Q ss_pred CcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCC
Q 020963 205 TYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDA 247 (319)
Q Consensus 205 ~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~ 247 (319)
++.|||+|+.++| ..||+-.|.|.+-.-+..+
T Consensus 326 rFFiVDcRpaeqy-----------naGHlstaFhlDc~lmlqe 357 (669)
T KOG3636|consen 326 RFFIVDCRPAEQY-----------NAGHLSTAFHLDCVLMLQE 357 (669)
T ss_pred EEEEEeccchhhc-----------ccccchhhhcccHHHHhcC
Confidence 4789999999999 6899999999988776554
No 129
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=68.04 E-value=17 Score=30.57 Aligned_cols=31 Identities=29% Similarity=0.301 Sum_probs=19.5
Q ss_pred CCCCCCCEEEecCCcH-HHH--HHHHHHHhcCCC
Q 020963 265 GISLEKPVVTACGTGV-TAC--ILALGLNRLGKH 295 (319)
Q Consensus 265 ~~~~~~~vivyC~~G~-ra~--~~~~~L~~~G~~ 295 (319)
...+.+.|+|+|..|. |++ .++++|...|..
T Consensus 101 ~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 101 ALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred HHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 3345669999998774 444 344566665543
No 130
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=67.92 E-value=12 Score=33.19 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHc--CCCCCCCEEEecCCcH-HHH-HHHHHHHhcCCC
Q 020963 252 LPADELKKRFEQE--GISLEKPVVTACGTGV-TAC-ILALGLNRLGKH 295 (319)
Q Consensus 252 ~~~~~l~~~l~~~--~~~~~~~vivyC~~G~-ra~-~~~~~L~~~G~~ 295 (319)
++.+.+.+++.-. -+..+.+|+|+|..|. |+. .++.+|-..|+.
T Consensus 151 Ps~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 151 PTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 3444444444321 2346779999999875 444 455556557763
No 131
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=66.71 E-value=14 Score=30.67 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=14.0
Q ss_pred CCCCCCEEEecCCcH-HHH
Q 020963 266 ISLEKPVVTACGTGV-TAC 283 (319)
Q Consensus 266 ~~~~~~vivyC~~G~-ra~ 283 (319)
..++.+|+|+|..|. |++
T Consensus 95 ~~~g~~V~VHC~aGigRSg 113 (166)
T PTZ00242 95 STPPETIAVHCVAGLGRAP 113 (166)
T ss_pred ccCCCeEEEECCCCCCHHH
Confidence 356889999999885 444
No 132
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=61.12 E-value=17 Score=30.65 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhC--CCCCCCeEEEEcCCCcc-hhHH-HHHHHHHhcCC
Q 020963 84 MLPSEEAFAAAVSAL--GLENKDGLVVYDGKGIF-SAAR-VWWMFRVFGHD 130 (319)
Q Consensus 84 ~~~~~~~~~~~~~~~--~i~~~~~vvly~~~g~~-~a~~-~~~~l~~~G~~ 130 (319)
..|+..++.+....+ ...+..+|+|+|..|.. +++. ++|+|...|..
T Consensus 84 ~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~ 134 (180)
T COG2453 84 TVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLS 134 (180)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCC
Confidence 445666666655443 23455699999987744 4444 44666665553
No 133
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=59.38 E-value=17 Score=29.91 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCCCCCCEEEecCCcH-HHH-HHHHHHHhcCCC
Q 020963 254 ADELKKRFEQEGISLEKPVVTACGTGV-TAC-ILALGLNRLGKH 295 (319)
Q Consensus 254 ~~~l~~~l~~~~~~~~~~vivyC~~G~-ra~-~~~~~L~~~G~~ 295 (319)
.+.+++.+.-..=.+ .|++++|..|- |.. .++.+|..+|..
T Consensus 110 ~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~ 152 (164)
T PF13350_consen 110 AEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVP 152 (164)
T ss_dssp HHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence 466666665332233 69999999986 555 445557789985
No 134
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=58.60 E-value=11 Score=29.62 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcH-HHH--HHHHHHHhcCCC
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGV-TAC--ILALGLNRLGKH 295 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~-ra~--~~~~~L~~~G~~ 295 (319)
+.+.+.+.+. ...+..|+|+|..|. ||+ .+++++...|+.
T Consensus 60 ~~~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 60 DQAVEFIENA-ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHHHHHHHHH-HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhhhh-hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 3344444432 456789999999986 544 334455656663
No 135
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=58.35 E-value=16 Score=30.48 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcH-HHH-HHHHHHHhcC
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGV-TAC-ILALGLNRLG 293 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~-ra~-~~~~~L~~~G 293 (319)
++|.+.|+ .++.|+++|..|. |+. .|+.+|-.+|
T Consensus 124 ~eL~~~L~-----~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 124 EELAARLE-----NGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHHHHHH-----TT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHH-----cCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 44555555 4779999999875 655 4566666666
No 136
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=55.78 E-value=5.7 Score=32.93 Aligned_cols=44 Identities=25% Similarity=0.236 Sum_probs=25.2
Q ss_pred CCCCCCCEEEec-C----CcHHHHHHHHHHHhcCCCCceeeeCcHHHHh
Q 020963 265 GISLEKPVVTAC-G----TGVTACILALGLNRLGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 265 ~~~~~~~vivyC-~----~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~ 308 (319)
+++++..+++.+ . .|......+.+|+.+|..+...||||-+.-.
T Consensus 96 G~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~l 144 (170)
T PF09992_consen 96 GVTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSSTL 144 (170)
T ss_dssp EE-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--E
T ss_pred EEeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceEE
Confidence 555565555555 4 3677778888999999999999999976543
No 137
>PLN02727 NAD kinase
Probab=50.79 E-value=58 Score=34.67 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=45.1
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCCch-hhhh----hcCCcCceecCcccccccCCCCCCCCCCHHHHHHHH
Q 020963 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPF-QEYQ----VAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 95 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~~~-~~~~----~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (319)
...++++++.++.+.+=-.||+.|...-.. .+. .+.+ ..-| .-+++|...- ..|+.+++++..
T Consensus 266 sgQpspe~la~LA~~GfKTIINLRpd~E~~--q~~~~ee~eAae~~GL-~yVhIPVs~~---------~apt~EqVe~fa 333 (986)
T PLN02727 266 GGQVTEEGLKWLLEKGFKTIVDLRAEIVKD--NFYQAAVDDAISSGKI-EVVKIPVEVR---------TAPSAEQVEKFA 333 (986)
T ss_pred eCCCCHHHHHHHHHCCCeEEEECCCCCcCC--CchhHHHHHHHHHcCC-eEEEeecCCC---------CCCCHHHHHHHH
Confidence 457899999887776435899999222100 000 0000 0101 2345664321 123455555554
Q ss_pred HhCCCCCCCeEEEEcCCCcchh
Q 020963 96 SALGLENKDGLVVYDGKGIFSA 117 (319)
Q Consensus 96 ~~~~i~~~~~vvly~~~g~~~a 117 (319)
+.+.-...+||++||.+|.+++
T Consensus 334 ~~l~~slpkPVLvHCKSGarRA 355 (986)
T PLN02727 334 SLVSDSSKKPIYLHSKEGVWRT 355 (986)
T ss_pred HHHHhhcCCCEEEECCCCCchH
Confidence 4442134689999999887543
No 138
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=48.80 E-value=16 Score=28.58 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=37.4
Q ss_pred HHHHHHHHHcCCCCCC--CEEEecCCcHHHHHHHHHHHhc-CCCCceeee
Q 020963 255 DELKKRFEQEGISLEK--PVVTACGTGVTACILALGLNRL-GKHDVAVYD 301 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~--~vivyC~~G~ra~~~~~~L~~~-G~~~v~~~~ 301 (319)
+-+.++++.+++++++ -|+|.+.....|..=+.+++.+ ||.+|-++.
T Consensus 24 eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~Gw~~Vplmc 73 (117)
T TIGR01796 24 ELLTELMERNELTPEDLISVIFTVTEDLHADFPAAAARGLPGWTDVPVMC 73 (117)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEecCcccccChHHHHHhccCCCCcceec
Confidence 4455778889998776 4566677788899888999998 999998875
No 139
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=45.99 E-value=39 Score=26.39 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=17.1
Q ss_pred CCCeEEEEcCCCcchhHH--HHHHHHHhcC
Q 020963 102 NKDGLVVYDGKGIFSAAR--VWWMFRVFGH 129 (319)
Q Consensus 102 ~~~~vvly~~~g~~~a~~--~~~~l~~~G~ 129 (319)
.+.+|+|+|..|..++.. +++++...|+
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 457999999887544442 3444554443
No 140
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=45.57 E-value=35 Score=33.86 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCC
Q 020963 84 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 138 (319)
Q Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG 138 (319)
++...+++.++..-+.-.-+.++|++.+.-- .+-.++..|..+|| +++.|.||
T Consensus 498 m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk-~~d~lAk~LeK~g~-~~~tlHg~ 550 (673)
T KOG0333|consen 498 MVSEDEKRKKLIEILESNFDPPIIIFVNTKK-GADALAKILEKAGY-KVTTLHGG 550 (673)
T ss_pred EecchHHHHHHHHHHHhCCCCCEEEEEechh-hHHHHHHHHhhccc-eEEEeeCC
Confidence 4556777777666554445667777765432 26678889999999 69999998
No 141
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=44.89 E-value=23 Score=29.48 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=18.8
Q ss_pred CCCCEEEecCCcH-HHHHHHHHHHh-cCCC
Q 020963 268 LEKPVVTACGTGV-TACILALGLNR-LGKH 295 (319)
Q Consensus 268 ~~~~vivyC~~G~-ra~~~~~~L~~-~G~~ 295 (319)
...||+|+|.+|. |.......|+. .||.
T Consensus 90 ~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~ 119 (164)
T PF03162_consen 90 RNYPVLIHCNHGKDRTGLVVGCLRKLQGWS 119 (164)
T ss_dssp GG-SEEEE-SSSSSHHHHHHHHHHHHTTB-
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHcCCC
Confidence 4679999999885 77777777765 5665
No 142
>PRK12361 hypothetical protein; Provisional
Probab=44.75 E-value=71 Score=31.95 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCCcEEEeccCCCcccCCCCCCCCCCCccccCCCcccCcccccCCCCCCCCHHHHHHHHHH--cCCCCCCC
Q 020963 194 LEQVKRNIEEGTYQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQMLDASQTLLPADELKKRFEQ--EGISLEKP 271 (319)
Q Consensus 194 ~~~l~~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~l~~~l~~--~~~~~~~~ 271 (319)
+.++..+.+.+=..|||++. |+....... ..+.+ .-.++|..+... .+.+++++.++. .....+++
T Consensus 110 a~d~~~L~~~gI~~Vldlt~--E~~~~~~~~----~~~~i-~yl~iPi~D~~~-----p~~~~l~~a~~~i~~~~~~~~~ 177 (547)
T PRK12361 110 PADLEKLKSNKITAILDVTA--EFDGLDWSL----TEEDI-DYLNIPILDHSV-----PTLAQLNQAINWIHRQVRANKS 177 (547)
T ss_pred cccHHHHHHcCCCEEEEccc--ccccccccc----cccCc-eEEEeecCCCCC-----CcHHHHHHHHHHHHHHHHCCCe
Confidence 34444333334467999994 342110000 00001 123556544322 233555554442 12345688
Q ss_pred EEEecCCcH-HHH
Q 020963 272 VVTACGTGV-TAC 283 (319)
Q Consensus 272 vivyC~~G~-ra~ 283 (319)
|+|+|..|. ||+
T Consensus 178 VlVHC~~G~sRSa 190 (547)
T PRK12361 178 VVVHCALGRGRSV 190 (547)
T ss_pred EEEECCCCCCcHH
Confidence 999999886 444
No 143
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=44.57 E-value=40 Score=33.49 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcH
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 304 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~ 304 (319)
..|.+.|+++ -+.|||+|.+.-..+...+..|..+||+ +..|-||-
T Consensus 506 kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK~g~~-~~tlHg~k 551 (673)
T KOG0333|consen 506 KKLIEILESN---FDPPIIIFVNTKKGADALAKILEKAGYK-VTTLHGGK 551 (673)
T ss_pred HHHHHHHHhC---CCCCEEEEEechhhHHHHHHHHhhccce-EEEeeCCc
Confidence 3444455543 5789999999988899999999999985 99999985
No 144
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.28 E-value=62 Score=28.09 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCCCCCEEEe-cCCcHHHHHHHH--------------------HHHhcCCCCce-eeeCcHHHHhCCC
Q 020963 257 LKKRFEQEGISLEKPVVTA-CGTGVTACILAL--------------------GLNRLGKHDVA-VYDGSWTEWGAQP 311 (319)
Q Consensus 257 l~~~l~~~~~~~~~~vivy-C~~G~ra~~~~~--------------------~L~~~G~~~v~-~~~Gg~~~W~~~~ 311 (319)
...+++-+.+.+...|+-. |.+|+.|+..+. -|+.+||.||. ....|+.+|....
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 3445566678777766655 678887765543 27789998885 4566788888864
No 145
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=43.55 E-value=60 Score=28.19 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEcCCCcchhHH--------------------HHHHHHHhcCCceEEe-cCCHHHHHhC
Q 020963 88 EEAFAAAVSALGLENKDGLVVYDGKGIFSAAR--------------------VWWMFRVFGHDRVWVL-DGGLPRWRAS 145 (319)
Q Consensus 88 ~~~~~~~~~~~~i~~~~~vvly~~~g~~~a~~--------------------~~~~l~~~G~~~v~~l-~GG~~~W~~~ 145 (319)
+.-..+.++.+.+.+...|+=+++..++.++. +...|+.+||+||.+. ..|..+|...
T Consensus 58 P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 58 PHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred cHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 33556677888888888888665433343333 3334888999888755 4466777654
No 146
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=42.20 E-value=16 Score=28.94 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=30.0
Q ss_pred EEEecCC-cHHHHHHHHHHHhc----CCCCceeeeCcHHHH
Q 020963 272 VVTACGT-GVTACILALGLNRL----GKHDVAVYDGSWTEW 307 (319)
Q Consensus 272 vivyC~~-G~ra~~~~~~L~~~----G~~~v~~~~Gg~~~W 307 (319)
|+|.|.. ..||.+|..+|+.+ +-.++.++-.|+..|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 6888975 56999999988887 556799999999887
No 147
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=41.08 E-value=32 Score=27.35 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=28.0
Q ss_pred EEEecCC-cHHHHHHHHHHHhcCCCCceeeeCcHHHHh
Q 020963 272 VVTACGT-GVTACILALGLNRLGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 272 vivyC~~-G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~ 308 (319)
|+|.|.. -.||.+|..+|+.+.-.++.+.-.|+..|.
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~~ 38 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAWV 38 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCCC
Confidence 5788864 468999988888765445888888888773
No 148
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=40.68 E-value=63 Score=29.47 Aligned_cols=52 Identities=19% Similarity=0.252 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHhCCCC---CCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCH
Q 020963 86 PSEEAFAAAVSALGLE---NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 139 (319)
Q Consensus 86 ~~~~~~~~~~~~~~i~---~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~ 139 (319)
-|..-|.+.+...++. +.+.+++.+ .|+. +..+++.|...|..+|.++|.-.
T Consensus 106 TD~~G~~~~L~~~~~~~~~~~~~vlilG-AGGA-arAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 106 TDGIGFLRALKEFGLPVDVTGKRVLILG-AGGA-ARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred CCHHHHHHHHHhcCCCcccCCCEEEEEC-CcHH-HHHHHHHHHHcCCCEEEEEeCCH
Confidence 3556777788876543 236677774 4542 56678889999999999999854
No 149
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=39.75 E-value=2.3e+02 Score=27.43 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHHH----hCCCCcccCCCcchhhhhhhhHHHHHHHhcCccc
Q 020963 102 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR----ASGYDVESSASGDAILKASAASEAIEKVYQGQVV 177 (319)
Q Consensus 102 ~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~----~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (319)
+++.+++.+- |.+ +..++..|...|+.+|.+.|.-+..=. +-|....... ...+.. .-
T Consensus 177 ~~~~vlvIGA-Gem-~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~-------------el~~~l---~~ 238 (414)
T COG0373 177 KDKKVLVIGA-GEM-GELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALE-------------ELLEAL---AE 238 (414)
T ss_pred ccCeEEEEcc-cHH-HHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHH-------------HHHHhh---hh
Confidence 6677888854 433 677888999999999999998765322 1121110000 000000 00
Q ss_pred CCcccccccCCccccCHHHHHHHhhcCC-cEEEeccCCCcccCCCCCCCCCCCccccCCCcccCccccc
Q 020963 178 GPTTFQTKFQPHLIWTLEQVKRNIEEGT-YQLVDARSKARFDGDAPEPRKGIRSGHVPGSKCIPFPQML 245 (319)
Q Consensus 178 ~~~~~~~~~~~~~~is~~~l~~~~~~~~-~~liDvR~~~e~~g~~~~~~~~~~~ghIpgA~~ip~~~l~ 245 (319)
.+.-|...-.+..+++...+...+.... .++||.--|.+.+. ..|.++|...+..+++.
T Consensus 239 ~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~---------~v~~l~~v~l~~iDDL~ 298 (414)
T COG0373 239 ADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEP---------EVGELPNVFLYTIDDLE 298 (414)
T ss_pred CCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCc---------cccCcCCeEEEehhhHH
Confidence 2223444456677899998888776433 69999999888842 46778888888777764
No 150
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=39.41 E-value=79 Score=28.57 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=35.3
Q ss_pred CHHHHHHHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCC
Q 020963 87 SEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 138 (319)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG 138 (319)
+..-|.+.++..++..++.+++.+. |+. +..++..|...|..+|.+++.-
T Consensus 106 D~~Gf~~~L~~~~~~~~~~vlilGa-GGa-arAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 106 DYIAIAKLLASYQVPPDLVVALRGS-GGM-AKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECC-cHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence 4556777777767766667777754 442 4556667888999999999864
No 151
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=37.28 E-value=74 Score=28.28 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHhCC--CCCCCeEEEEcCCCcchhH-HHHHHHHHhcC
Q 020963 85 LPSEEAFAAAVSALG--LENKDGLVVYDGKGIFSAA-RVWWMFRVFGH 129 (319)
Q Consensus 85 ~~~~~~~~~~~~~~~--i~~~~~vvly~~~g~~~a~-~~~~~l~~~G~ 129 (319)
.|+.+.+.+++..+. +..+..|+|+|..|..++. .++..|-..|+
T Consensus 150 aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gm 197 (241)
T PTZ00393 150 APTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGM 197 (241)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 455555444443321 3466789999988744444 34444444565
No 152
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=36.49 E-value=40 Score=28.17 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHhC--CCCCCCeEEEEcCCCcchhHH-HHHHHHHhc
Q 020963 86 PSEEAFAAAVSAL--GLENKDGLVVYDGKGIFSAAR-VWWMFRVFG 128 (319)
Q Consensus 86 ~~~~~~~~~~~~~--~i~~~~~vvly~~~g~~~a~~-~~~~l~~~G 128 (319)
|+.+.+.+.+..+ .+..+++|+++|..|..++.- ++-+|-.+|
T Consensus 114 Pd~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 114 PDFAAAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp --HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 4444444443333 235678999999887555554 445555555
No 153
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=36.27 E-value=76 Score=27.44 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=24.6
Q ss_pred CCCEEEecCCcH---HHHHHHHHHHhcCCCCceeee
Q 020963 269 EKPVVTACGTGV---TACILALGLNRLGKHDVAVYD 301 (319)
Q Consensus 269 ~~~vivyC~~G~---ra~~~~~~L~~~G~~~v~~~~ 301 (319)
..+|+|.|..|. .+-.++..|+..|+. |.++-
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~~ 83 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVLL 83 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEEE
Confidence 678999998665 677888889999975 65543
No 154
>PTZ00175 diphthine synthase; Provisional
Probab=35.90 E-value=3.3e+02 Score=24.57 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCceEEecC--CHHHHHhCCCCcccC
Q 020963 118 ARVWWMFRVFGHDRVWVLDG--GLPRWRASGYDVESS 152 (319)
Q Consensus 118 ~~~~~~l~~~G~~~v~~l~G--G~~~W~~~g~p~~~~ 152 (319)
......++..|++ +.++.| -+.+-...|+++..-
T Consensus 94 ~~l~~~~~~~gi~-vevIPGvSi~sA~~~~Gl~~~~f 129 (270)
T PTZ00175 94 TDLYLRAKKKGIE-VEVIHNASIMNAIGCTGLQLYRF 129 (270)
T ss_pred HHHHHHHHHCCCc-EEEECCcCHHHHHhhcCCCcCCC
Confidence 3445567777884 888884 445555567776664
No 155
>PLN02645 phosphoglycolate phosphatase
Probab=35.11 E-value=78 Score=29.06 Aligned_cols=24 Identities=4% Similarity=0.153 Sum_probs=18.4
Q ss_pred CCCcccHHHHHHhcCCCCeEEEEe
Q 020963 20 KEPVVSVDWLHANLREPDLKVLDA 43 (319)
Q Consensus 20 ~~~~Is~~~l~~~l~~~~~~iiDv 43 (319)
.....+.+++.+++++-+++++|+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~D~ 35 (311)
T PLN02645 12 AAQLLTLENADELIDSVETFIFDC 35 (311)
T ss_pred ccccCCHHHHHHHHHhCCEEEEeC
Confidence 344566678888887767999998
No 156
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=34.38 E-value=88 Score=25.91 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCCCCCEEEecCCcHH---HHHHHHHHHhcCCCCcee
Q 020963 266 ISLEKPVVTACGTGVT---ACILALGLNRLGKHDVAV 299 (319)
Q Consensus 266 ~~~~~~vivyC~~G~r---a~~~~~~L~~~G~~~v~~ 299 (319)
..+..+|++.|..|.. +-.++..|...|+. |.+
T Consensus 22 ~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 4678899999987764 45667778889986 665
No 157
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=34.11 E-value=3.1e+02 Score=23.63 Aligned_cols=32 Identities=13% Similarity=0.121 Sum_probs=19.5
Q ss_pred CeEEEEcCCCcchhHHHHHHHHHhcCCceEEecC
Q 020963 104 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 137 (319)
Q Consensus 104 ~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~G 137 (319)
..|.+.++.... -..+.++|...||+ |..+.-
T Consensus 5 ~~V~vVDDD~~v-r~al~~Ll~s~G~~-v~~~~s 36 (202)
T COG4566 5 PLVHVVDDDESV-RDALAFLLESAGFQ-VKCFAS 36 (202)
T ss_pred CeEEEEcCcHHH-HHHHHHHHHhCCce-eeeecC
Confidence 345566554332 34567899999995 655543
No 158
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.02 E-value=52 Score=24.57 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=27.1
Q ss_pred CCCEEEecCCcHHHHHHHHHH----HhcCCCCceeeeCcHHHH
Q 020963 269 EKPVVTACGTGVTACILALGL----NRLGKHDVAVYDGSWTEW 307 (319)
Q Consensus 269 ~~~vivyC~~G~ra~~~~~~L----~~~G~~~v~~~~Gg~~~W 307 (319)
.+.|++.|.+|..++..+..+ +..|++ +.+...+..+-
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a~~~~~~ 44 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAAGSYGAA 44 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEEecHHHH
Confidence 467999999999888776654 446775 66666666554
No 159
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=33.70 E-value=1.3e+02 Score=22.69 Aligned_cols=47 Identities=21% Similarity=0.174 Sum_probs=33.4
Q ss_pred HHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcH
Q 020963 256 ELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 304 (319)
Q Consensus 256 ~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~ 304 (319)
.+.+.+.+ ..+.+.+++|||.+-..+...+..|...+. ++..+.|+.
T Consensus 16 ~i~~~i~~-~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ 62 (131)
T cd00079 16 ALLELLKE-HLKKGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDG 62 (131)
T ss_pred HHHHHHHh-cccCCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCC
Confidence 34444443 233677899999998888888888887665 477888875
No 160
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=33.64 E-value=47 Score=31.76 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHHH
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWTE 306 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~ 306 (319)
..|..++.. ....++||||++...+.+.+.+|+.+||. ..-+.|-+..
T Consensus 289 ~yLV~ll~e---~~g~s~iVF~~t~~tt~~la~~L~~lg~~-a~~LhGqmsq 336 (476)
T KOG0330|consen 289 TYLVYLLNE---LAGNSVIVFCNTCNTTRFLALLLRNLGFQ-AIPLHGQMSQ 336 (476)
T ss_pred hhHHHHHHh---hcCCcEEEEEeccchHHHHHHHHHhcCcc-eecccchhhH
Confidence 445555552 22489999999999999999999999996 5556665544
No 161
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=33.62 E-value=1e+02 Score=24.07 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=20.3
Q ss_pred CCCCCeEEEEcCCCcchhH--HHHHHHHHhcCC
Q 020963 100 LENKDGLVVYDGKGIFSAA--RVWWMFRVFGHD 130 (319)
Q Consensus 100 i~~~~~vvly~~~g~~~a~--~~~~~l~~~G~~ 130 (319)
+..+.+|+|+|..|..++. .+++++...|++
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 4567899999988753333 355566666653
No 162
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=32.89 E-value=1e+02 Score=28.11 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred CceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEec
Q 020963 65 GALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 136 (319)
Q Consensus 65 gAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~ 136 (319)
||+|. +...++.+.+.-=|..-|.+.++..+++...+-++.-+.|+. +..+++.|...|..+|.+++
T Consensus 89 GAVNT----v~~~~g~l~G~NTD~~Gf~~~l~~~~~~~~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 89 GAINT----IVNDDGYLRGYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred CceeE----EEccCCEEEEEecCHHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEe
No 163
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=32.35 E-value=1.4e+02 Score=22.26 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCC
Q 020963 85 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHD 130 (319)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~ 130 (319)
+|.+.++-+.++.. +.++++..+++..+.......|+.+|++
T Consensus 16 ipga~e~l~~L~~~----g~~~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 16 IPGAVEALDALRER----GKPVVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp -TTHHHHHHHHHHT----TSEEEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred CcCHHHHHHHHHHc----CCCEEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 44455666666664 4678888777666556777788999996
No 164
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=32.05 E-value=74 Score=24.89 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=26.1
Q ss_pred CEEEecC-CcHHHHHHHHHHHhcCCCCceeeeCcHH
Q 020963 271 PVVTACG-TGVTACILALGLNRLGKHDVAVYDGSWT 305 (319)
Q Consensus 271 ~vivyC~-~G~ra~~~~~~L~~~G~~~v~~~~Gg~~ 305 (319)
.|+|.|. +-.||.+|-.+|+.++-.++.++-.|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 4788896 4568888888888876556777777764
No 165
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=31.82 E-value=95 Score=23.03 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=25.1
Q ss_pred CEEEecCCcHHHHHH-HH----HHHhcCCCCceeeeCcHHHHh
Q 020963 271 PVVTACGTGVTACIL-AL----GLNRLGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 271 ~vivyC~~G~ra~~~-~~----~L~~~G~~~v~~~~Gg~~~W~ 308 (319)
.|++.|++|..++.. +. .|...|++ +.+...+..+-.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~-~~v~~~~~~e~~ 45 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEIE 45 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCe-EEEEEecHHHHh
Confidence 489999999865544 33 35667875 667666666654
No 166
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=30.74 E-value=1e+02 Score=27.95 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=31.8
Q ss_pred CHHHHHHHHHhCCCC-CCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCC
Q 020963 87 SEEAFAAAVSALGLE-NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 138 (319)
Q Consensus 87 ~~~~~~~~~~~~~i~-~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG 138 (319)
+..-|...++..+.. +++.++|.+. |+ .+..++..|...|.++|.+++..
T Consensus 109 D~~G~~~~l~~~~~~~~~k~vlI~GA-GG-agrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 109 DGLGFVRNLREHGVDVKGKKLTVIGA-GG-AATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CHHHHHHHHHhcCCCcCCCEEEEECC-cH-HHHHHHHHHHHCCCCEEEEEeCC
Confidence 455677777665543 3456666654 43 24446666788899889988763
No 167
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=30.70 E-value=30 Score=27.12 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCCCCC--CEEEecCCcHHHHHHHHHHHhc-CCCCceeee
Q 020963 255 DELKKRFEQEGISLEK--PVVTACGTGVTACILALGLNRL-GKHDVAVYD 301 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~--~vivyC~~G~ra~~~~~~L~~~-G~~~v~~~~ 301 (319)
+=+.++++.+++.+++ -|+|.+.....|..=+.+++.+ ||.+|-++.
T Consensus 24 eLl~~i~~~N~l~~~dIvSi~FT~T~DL~a~fPA~a~R~~~g~~~Vpl~c 73 (118)
T PF07736_consen 24 ELLEEILERNELSPEDIVSIIFTVTPDLDAAFPAAAARELPGWDDVPLMC 73 (118)
T ss_dssp HHHHHHHHHTT--GGGEEEEEEEE-TT--SS-TCHHHHHTTTGTTSEEEE
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEeCCCcCccChHHHHHccCCCCccceec
Confidence 4456778889998876 4556667778888888999998 999888764
No 168
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=30.05 E-value=82 Score=24.38 Aligned_cols=41 Identities=7% Similarity=0.147 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCCCCeEEEEcCCCcchhH--HHHHHHHHhcCC
Q 020963 89 EAFAAAVSALGLENKDGLVVYDGKGIFSAA--RVWWMFRVFGHD 130 (319)
Q Consensus 89 ~~~~~~~~~~~i~~~~~vvly~~~g~~~a~--~~~~~l~~~G~~ 130 (319)
+.+.+.+... ..++.+|+|+|..|..+++ .+++++...|++
T Consensus 60 ~~~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 60 DQAVEFIENA-ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHHHHHHHHH-HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhhhh-hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 3444444443 4567889999988754443 355566666763
No 169
>PRK05852 acyl-CoA synthetase; Validated
Probab=29.97 E-value=99 Score=30.28 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCC
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH 295 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~ 295 (319)
.++.+.|.+.|+.++++|.++|.++.....+++.+...|..
T Consensus 54 ~~~a~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 94 (534)
T PRK05852 54 DDLAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLV 94 (534)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCcE
Confidence 56677788889999999999999999999999998888874
No 170
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.18 E-value=1.1e+02 Score=30.02 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHH
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 305 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~ 305 (319)
+.+..++.+ ..+++..||||++-..+-..+..|+..|+. +..|.||+.
T Consensus 214 ~~l~~~l~~--~~~~~~~IIF~~s~~~~e~la~~L~~~g~~-~~~~H~~l~ 261 (470)
T TIGR00614 214 EDLLRFIRK--EFKGKSGIIYCPSRKKSEQVTASLQNLGIA-AGAYHAGLE 261 (470)
T ss_pred HHHHHHHHH--hcCCCceEEEECcHHHHHHHHHHHHhcCCC-eeEeeCCCC
Confidence 445555552 234667799999999999999999999985 788888864
No 171
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=28.52 E-value=82 Score=25.39 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=29.4
Q ss_pred CCEEEecC-CcHHHHHHHHHHHhcCCCCceeeeCcHHHHh
Q 020963 270 KPVVTACG-TGVTACILALGLNRLGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 270 ~~vivyC~-~G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~ 308 (319)
+.|+|.|. +-.||..|-.+|+.+.- ++.++-.|...|.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~~ 41 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGLV 41 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCCC
Confidence 36899996 55799999999987653 4788888887763
No 172
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=28.22 E-value=61 Score=24.73 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=25.9
Q ss_pred CEEEecCCcHHHHHHHHHH----HhcCCCCceeeeCcHHHH
Q 020963 271 PVVTACGTGVTACILALGL----NRLGKHDVAVYDGSWTEW 307 (319)
Q Consensus 271 ~vivyC~~G~ra~~~~~~L----~~~G~~~v~~~~Gg~~~W 307 (319)
.|++.|.+|..++..+..+ +..|++ +.+-..+..+-
T Consensus 3 kILlvCg~G~STSlla~k~k~~~~e~gi~-~~i~a~~~~e~ 42 (104)
T PRK09590 3 KALIICAAGMSSSMMAKKTTEYLKEQGKD-IEVDAITATEG 42 (104)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 5899999999888777655 446775 66666666554
No 173
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=28.19 E-value=1.3e+02 Score=24.98 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=14.2
Q ss_pred CCCCeEEEEcCCCcchhHH
Q 020963 101 ENKDGLVVYDGKGIFSAAR 119 (319)
Q Consensus 101 ~~~~~vvly~~~g~~~a~~ 119 (319)
.++.+|+|+|..|..+++.
T Consensus 96 ~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred cCCCeEEEECCCCCCHHHH
Confidence 5678999999988555543
No 174
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=28.16 E-value=1.1e+02 Score=30.74 Aligned_cols=38 Identities=24% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHH
Q 020963 267 SLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 305 (319)
Q Consensus 267 ~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~ 305 (319)
.....+||||++-..+...+..|...|+. +..|.|++.
T Consensus 255 ~~~~k~LVF~nt~~~ae~l~~~L~~~g~~-v~~lhg~l~ 292 (572)
T PRK04537 255 SEGARTMVFVNTKAFVERVARTLERHGYR-VGVLSGDVP 292 (572)
T ss_pred ccCCcEEEEeCCHHHHHHHHHHHHHcCCC-EEEEeCCCC
Confidence 45678999999999999999999999985 888888753
No 175
>PRK12361 hypothetical protein; Provisional
Probab=28.07 E-value=1.5e+02 Score=29.66 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHhC--CCCCCCeEEEEcCCCcch-hHH-HHHHH
Q 020963 86 PSEEAFAAAVSAL--GLENKDGLVVYDGKGIFS-AAR-VWWMF 124 (319)
Q Consensus 86 ~~~~~~~~~~~~~--~i~~~~~vvly~~~g~~~-a~~-~~~~l 124 (319)
|+.++|.+....+ ....+.+|+|+|..|..+ ++. ++|++
T Consensus 156 p~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm 198 (547)
T PRK12361 156 PTLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLL 198 (547)
T ss_pred CcHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHH
Confidence 4556776655443 234567899999877443 333 44444
No 176
>PRK10126 tyrosine phosphatase; Provisional
Probab=27.80 E-value=81 Score=25.42 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=29.5
Q ss_pred CCEEEecCC-cHHHHHHHHHHHhcCCCCceeeeCcHHHHh
Q 020963 270 KPVVTACGT-GVTACILALGLNRLGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 270 ~~vivyC~~-G~ra~~~~~~L~~~G~~~v~~~~Gg~~~W~ 308 (319)
..|+|.|.. -.||..|..+|+.++- .+.+.-.|...|.
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~~ 41 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGALV 41 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCCC
Confidence 468999964 5799999999988763 4778888887663
No 177
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.78 E-value=2.7e+02 Score=22.05 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhCCCCCCCeEEEEcCCC---cchhHHHHHHHHHhcCCceEEecCC
Q 020963 87 SEEAFAAAVSALGLENKDGLVVYDGKG---IFSAARVWWMFRVFGHDRVWVLDGG 138 (319)
Q Consensus 87 ~~~~~~~~~~~~~i~~~~~vvly~~~g---~~~a~~~~~~l~~~G~~~v~~l~GG 138 (319)
++++|.+...+ .+..+|+.|... ......+...|+..|.+++.++-||
T Consensus 41 s~e~~v~aa~e----~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG 91 (132)
T TIGR00640 41 TPEEIARQAVE----ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGG 91 (132)
T ss_pred CHHHHHHHHHH----cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 45566544433 344556665432 1234456667778787677777776
No 178
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=27.63 E-value=1.6e+02 Score=22.52 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeC
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDG 302 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~G 302 (319)
+++++.++ .++.++.|++.|+-+-.+............++++++.|
T Consensus 45 ~~l~~~i~--~~~~~~~vlil~Dl~ggsp~n~a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 45 EKLEEAIE--ELDEGDGVLILTDLGGGSPFNEAARLLLDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHH--HCCTTSEEEEEESSTTSHHHHHHHHHHCTSTTEEEEES
T ss_pred HHHHHHHH--hccCCCcEEEEeeCCCCccchHHHHHhccCCCEEEEec
Confidence 45566665 56678888888874444444433333445555666654
No 179
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=27.53 E-value=1.4e+02 Score=27.05 Aligned_cols=67 Identities=22% Similarity=0.095 Sum_probs=0.0
Q ss_pred CceecCcccccccCCCCCCCCCCHHHHHHHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEec
Q 020963 65 GALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLD 136 (319)
Q Consensus 65 gAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~ 136 (319)
||+|. +...++.+.+.-=+..-|...++.........-|+.-+.|+. +..+++.|...|..+|.+++
T Consensus 92 GAvNT----v~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~k~vlIlGaGGa-araia~aL~~~G~~~I~I~n 158 (284)
T PRK12549 92 GAVNT----VVFRDGRRIGHNTDWSGFAESFRRGLPDASLERVVQLGAGGA-GAAVAHALLTLGVERLTIFD 158 (284)
T ss_pred CCceE----EEecCCEEEEEcCCHHHHHHHHHhhccCccCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEC
No 180
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=27.35 E-value=1.1e+02 Score=21.56 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.0
Q ss_pred CCCCeEEEEcCCCcchhHHHHHHHHHhcCC
Q 020963 101 ENKDGLVVYDGKGIFSAARVWWMFRVFGHD 130 (319)
Q Consensus 101 ~~~~~vvly~~~g~~~a~~~~~~l~~~G~~ 130 (319)
..+..|+||...++..-.++...|+.+|++
T Consensus 5 ~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 5 RKPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred CCCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 456778999888877677788889999886
No 181
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=26.94 E-value=62 Score=25.33 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCCCC--CEEEecCCcHHHHHHHHHHHhc-CCCCceeee
Q 020963 255 DELKKRFEQEGISLEK--PVVTACGTGVTACILALGLNRL-GKHDVAVYD 301 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~--~vivyC~~G~ra~~~~~~L~~~-G~~~v~~~~ 301 (319)
+-+.++++.+++.+++ -|+|.+.....|..=+.+++.+ |+++|-++.
T Consensus 24 eLl~~i~~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~~~~~Vplmc 73 (117)
T cd02185 24 ELLEEIIERNNIKPEDIISVIFTVTPDLDAAFPAKAARELGGWKYVPLMC 73 (117)
T ss_pred HHHHHHHHHcCCCHHHEEEEEEEeCCcccccChHHHHHhcCCCCCcceee
Confidence 4455778889998876 4566677778898888899887 667888775
No 182
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=26.48 E-value=1.3e+02 Score=23.66 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHH
Q 020963 102 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPR 141 (319)
Q Consensus 102 ~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~ 141 (319)
+++.+++.+. |+. +..++..|...|.++|.+++.-...
T Consensus 11 ~~~~vlviGa-Gg~-ar~v~~~L~~~g~~~i~i~nRt~~r 48 (135)
T PF01488_consen 11 KGKRVLVIGA-GGA-ARAVAAALAALGAKEITIVNRTPER 48 (135)
T ss_dssp TTSEEEEESS-SHH-HHHHHHHHHHTTSSEEEEEESSHHH
T ss_pred CCCEEEEECC-HHH-HHHHHHHHHHcCCCEEEEEECCHHH
Confidence 5678888854 443 6667778888999999999987654
No 183
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=26.22 E-value=74 Score=26.38 Aligned_cols=42 Identities=19% Similarity=0.059 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHhCCCCCCCeEEEEcCCCcchhHHHHHHHHHh
Q 020963 86 PSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVF 127 (319)
Q Consensus 86 ~~~~~~~~~~~~~~i~~~~~vvly~~~g~~~a~~~~~~l~~~ 127 (319)
...+.+.+.++.+--....||+++|..|..+...+...|+.+
T Consensus 74 ~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~ 115 (164)
T PF03162_consen 74 ISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKL 115 (164)
T ss_dssp --HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHH
Confidence 445566666654422356899999998877778877777765
No 184
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=25.78 E-value=1.1e+02 Score=22.14 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=12.5
Q ss_pred CCCCEEEecCCcH-HHH
Q 020963 268 LEKPVVTACGTGV-TAC 283 (319)
Q Consensus 268 ~~~~vivyC~~G~-ra~ 283 (319)
.+.||+|+|..|. |+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00012 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 3679999999876 555
No 185
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=25.78 E-value=1.1e+02 Score=22.14 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=12.5
Q ss_pred CCCCEEEecCCcH-HHH
Q 020963 268 LEKPVVTACGTGV-TAC 283 (319)
Q Consensus 268 ~~~~vivyC~~G~-ra~ 283 (319)
.+.||+|+|..|. |+.
T Consensus 38 ~~~pvlVHC~~G~gRtg 54 (105)
T smart00404 38 SSGPVVVHCSAGVGRTG 54 (105)
T ss_pred CCCCEEEEeCCCCChhh
Confidence 3679999999876 555
No 186
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=25.50 E-value=60 Score=25.58 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=26.6
Q ss_pred EEEEcCCCcchhHHHHHHHHHh----cCCceEEecCCHHHH
Q 020963 106 LVVYDGKGIFSAARVWWMFRVF----GHDRVWVLDGGLPRW 142 (319)
Q Consensus 106 vvly~~~g~~~a~~~~~~l~~~----G~~~v~~l~GG~~~W 142 (319)
|+|.|....-+|.-+..+|+.+ +-.++.+...|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 4566765444577777788888 667888999887765
No 187
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=25.16 E-value=91 Score=21.58 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=27.3
Q ss_pred ccccccCCCCC--CCcccHHHHHHhcCCC-CeEEEEee
Q 020963 10 ADYSTLSVSPK--EPVVSVDWLHANLREP-DLKVLDAS 44 (319)
Q Consensus 10 ~~~~~~~~~~~--~~~Is~~~l~~~l~~~-~~~iiDvR 44 (319)
++|+-+.++.. ...|+-+++.+++.++ ++.|+|..
T Consensus 4 KKY~NRRLYDT~~s~YiTL~di~~lV~~g~~~~V~D~k 41 (64)
T PF07879_consen 4 KKYPNRRLYDTETSSYITLEDIAQLVREGEDFKVVDAK 41 (64)
T ss_pred cccCCCccccCCCceeEeHHHHHHHHHCCCeEEEEECC
Confidence 35666666544 6799999999999765 69999996
No 188
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=24.46 E-value=1.5e+02 Score=27.73 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCC
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH 295 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~ 295 (319)
..+.+.|.+.|+.++..|+++|........+++++..+|..
T Consensus 32 ~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 32 RKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-E
T ss_pred HHHhhHHHHhCCCccccccccCCccceeeeeeccccccccc
Confidence 56677788889999999999999999888888888888875
No 189
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=24.45 E-value=1.1e+02 Score=24.74 Aligned_cols=32 Identities=6% Similarity=0.123 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHc-CCCCCCCEEEecCCcH
Q 020963 249 QTLLPADELKKRFEQE-GISLEKPVVTACGTGV 280 (319)
Q Consensus 249 ~~~~~~~~l~~~l~~~-~~~~~~~vivyC~~G~ 280 (319)
+..++++.|.++++-. .++++..++|+|..|.
T Consensus 103 ~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~ 135 (149)
T PF14566_consen 103 HQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGR 135 (149)
T ss_dssp TS---HHHHHHHHHHHHTS-TT-EEEEE-SSSS
T ss_pred cCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCC
Confidence 3344554444444421 5578999999999885
No 190
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.45 E-value=66 Score=24.31 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=26.5
Q ss_pred EEEecCCcHHHHHHHHHHH----hcCCCCceeeeCcHHHHh
Q 020963 272 VVTACGTGVTACILALGLN----RLGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 272 vivyC~~G~ra~~~~~~L~----~~G~~~v~~~~Gg~~~W~ 308 (319)
|++.|.+|..++.++..++ ..|++ +.+...+..+-.
T Consensus 3 Ill~C~~GaSSs~la~km~~~a~~~gi~-~~i~a~~~~e~~ 42 (99)
T cd05565 3 VLVLCAGGGTSGLLANALNKGAKERGVP-LEAAAGAYGSHY 42 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEEeeHHHHH
Confidence 8899999998888877654 46874 767666666543
No 191
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=24.30 E-value=75 Score=23.64 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=24.7
Q ss_pred EEEecCCcHHHHHHHHHHH----hcCCCCceeeeCcHHHH
Q 020963 272 VVTACGTGVTACILALGLN----RLGKHDVAVYDGSWTEW 307 (319)
Q Consensus 272 vivyC~~G~ra~~~~~~L~----~~G~~~v~~~~Gg~~~W 307 (319)
|++.|.+|..++..+..++ ..|++ +.+...+..+-
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~-~~v~~~~~~~~ 40 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGID-AEIEAVPESEL 40 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCc-eEEEEecHHHH
Confidence 7899999998887766554 46764 66666665544
No 192
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=23.64 E-value=2.3e+02 Score=25.51 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCc
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGS 303 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg 303 (319)
.-+.+.|++.+++.++.+++... |-.|..+++.|..+|...+.+++-.
T Consensus 108 ~Gf~~~L~~~~~~~~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 108 IAIAKLLASYQVPPDLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred HHHHHHHHhcCCCCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 44555566556665566666654 4444555556778898778887664
No 193
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=23.47 E-value=1.6e+02 Score=25.78 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=22.2
Q ss_pred CCCCCCEEEecCCcHH-HHHHHH----HHHhcCCCCceee
Q 020963 266 ISLEKPVVTACGTGVT-ACILAL----GLNRLGKHDVAVY 300 (319)
Q Consensus 266 ~~~~~~vivyC~~G~r-a~~~~~----~L~~~G~~~v~~~ 300 (319)
+++++.+|+.|..... |..++. +|+..||.+|++-
T Consensus 134 l~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 134 LNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred cCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 3478889999975433 323332 3566899888763
No 194
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=23.39 E-value=1.1e+02 Score=24.22 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=24.6
Q ss_pred EEEEcCCCcchhHHHHHHHHHhcCCceEEecCCHHHH
Q 020963 106 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 142 (319)
Q Consensus 106 vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W 142 (319)
|++.|....-+|.-+..+|+.+.-.++.+...|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 3566654433477777788776645688888887765
No 195
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=23.35 E-value=2.2e+02 Score=23.44 Aligned_cols=34 Identities=15% Similarity=0.010 Sum_probs=22.3
Q ss_pred CCCCCeEEEEcCCCc--chhHHHHHHHHHhcCCceEE
Q 020963 100 LENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWV 134 (319)
Q Consensus 100 i~~~~~vvly~~~g~--~~a~~~~~~l~~~G~~~v~~ 134 (319)
..+..+|++.|+.|. ...-.++..|...|++ |.+
T Consensus 22 ~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 22 SPKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 456778888887652 2355677789999995 665
No 196
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=23.28 E-value=1e+02 Score=27.43 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCEEEecCCc---HHHHHHHHHHHhcCCCCceee
Q 020963 270 KPVVTACGTG---VTACILALGLNRLGKHDVAVY 300 (319)
Q Consensus 270 ~~vivyC~~G---~ra~~~~~~L~~~G~~~v~~~ 300 (319)
+.|+|.|..| -.+-.++..|...|++ |.+|
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 6799999755 4677788888889985 7766
No 197
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=22.99 E-value=1.8e+02 Score=28.31 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHh--cCCCCceeeeCcHHHHh
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR--LGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~--~G~~~v~~~~Gg~~~W~ 308 (319)
.++.+.|.+.-......-|+||++|..|..++..|.. -|-+.+..++||+.+|.
T Consensus 88 ~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t 143 (445)
T PRK08593 88 VRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGST 143 (445)
T ss_pred HHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCc
Confidence 4556666643221212468899999998877776533 46666788899998885
No 198
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=22.76 E-value=1.4e+02 Score=28.83 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHh--cCCCCceeeeCcHHHHhC
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR--LGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~--~G~~~v~~~~Gg~~~W~~ 309 (319)
.++.+.|.+.- ++...-++||++|..|..++..|.. -|-+.+..++|++.+|..
T Consensus 89 ~~la~~L~~~~-~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 144 (433)
T PRK08117 89 LKLAEELAEIT-PGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTL 144 (433)
T ss_pred HHHHHHHHHhC-CCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCH
Confidence 55666666432 2334578999999998877766533 466678888998888753
No 199
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=22.48 E-value=1.6e+02 Score=29.21 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=30.4
Q ss_pred CEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHH
Q 020963 271 PVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 305 (319)
Q Consensus 271 ~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~ 305 (319)
.+||+|++-..+...+..|...|+. +..+.|++.
T Consensus 275 ~~IVF~~tk~~~~~l~~~l~~~g~~-~~~lhG~l~ 308 (513)
T COG0513 275 RVIVFVRTKRLVEELAESLRKRGFK-VAALHGDLP 308 (513)
T ss_pred eEEEEeCcHHHHHHHHHHHHHCCCe-EEEecCCCC
Confidence 5999999999999999999999986 888888864
No 200
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=22.41 E-value=2.2e+02 Score=25.67 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=34.1
Q ss_pred CHHHHHHHHHhCCC---CCCCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecCC
Q 020963 87 SEEAFAAAVSALGL---ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 138 (319)
Q Consensus 87 ~~~~~~~~~~~~~i---~~~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~GG 138 (319)
|..-|...++..+. -+++.++|.+. |+. +..++..|..+|.++|.+++.-
T Consensus 106 D~~G~~~~l~~~~~~~~~~~k~vlvlGa-GGa-arai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 106 DWDGIAGALANIGKFEPLAGFRGLVIGA-GGT-SRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CHHHHHHHHHhhCCccccCCceEEEEcC-cHH-HHHHHHHHHHcCCCeEEEEeCC
Confidence 45567777766552 24567777754 442 4556677888999999999864
No 201
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=22.28 E-value=72 Score=25.33 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=28.1
Q ss_pred CEEEecCC-cHHHHHHHHHHHhcCCC-CceeeeCcHHHH
Q 020963 271 PVVTACGT-GVTACILALGLNRLGKH-DVAVYDGSWTEW 307 (319)
Q Consensus 271 ~vivyC~~-G~ra~~~~~~L~~~G~~-~v~~~~Gg~~~W 307 (319)
.|+|.|.. -.||.+|..+|+.+.-. ++.++-.|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 48899964 46888998888876443 688888888765
No 202
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=22.26 E-value=2.5e+02 Score=21.67 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHcCCCCCCCEEEecCCcHH---HHHHHHHHHhcCCCCceee
Q 020963 253 PADELKKRFEQEGISLEKPVVTACGTGVT---ACILALGLNRLGKHDVAVY 300 (319)
Q Consensus 253 ~~~~l~~~l~~~~~~~~~~vivyC~~G~r---a~~~~~~L~~~G~~~v~~~ 300 (319)
+.+++.+.++.. +++.+|++.++.... -....-.++.+|+.++.+.
T Consensus 70 ~~~~L~~~l~~~--~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 70 SLEELEAEIAQL--NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred CHHHHHHHHHhh--CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 446777777754 567889999887653 3344556788999887653
No 203
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=22.02 E-value=1.5e+02 Score=27.37 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCC-CceeeeCcH
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKH-DVAVYDGSW 304 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~-~v~~~~Gg~ 304 (319)
..+.+++. ...++..++++|++-..+...+..|+..+.. ++..|-|++
T Consensus 210 ~~l~~l~~--~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~ 258 (358)
T TIGR01587 210 SSLERLLE--FIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRF 258 (358)
T ss_pred HHHHHHHH--HhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCC
Confidence 44444554 2345678999999998999999999887764 588888886
No 204
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=21.95 E-value=1.4e+02 Score=30.38 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHH
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 305 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~ 305 (319)
+.+...+.. .+++..||||++-..+...+..|+..|+. +..|.+|+.
T Consensus 225 ~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~~g~~-v~~~Ha~l~ 271 (607)
T PRK11057 225 DQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSRGIS-AAAYHAGLD 271 (607)
T ss_pred HHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEecCCCC
Confidence 444444442 35678999999988899999999999985 888888873
No 205
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=21.89 E-value=1.8e+02 Score=28.22 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=30.8
Q ss_pred CCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHH
Q 020963 269 EKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 305 (319)
Q Consensus 269 ~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~ 305 (319)
...+|+||++-..+...+..|...|+. +..|.|++.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~-v~~~hg~~~ 277 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFS-ALALHGDLE 277 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCc-EEEEeCCCC
Confidence 457899999999999999999999985 888888764
No 206
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=21.88 E-value=1.9e+02 Score=29.25 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcHH
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSWT 305 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~~ 305 (319)
+.+...+... .+...|+||++-..+...+..|...|+. +..|.||+.
T Consensus 213 ~~l~~~l~~~---~~~~~IIf~~sr~~~e~la~~L~~~g~~-~~~~H~~l~ 259 (591)
T TIGR01389 213 KFLLDYLKKH---RGQSGIIYASSRKKVEELAERLESQGIS-ALAYHAGLS 259 (591)
T ss_pred HHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHhCCCC-EEEEECCCC
Confidence 4555566532 2578899999988888889999999985 778888864
No 207
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.66 E-value=1.8e+02 Score=23.06 Aligned_cols=83 Identities=11% Similarity=-0.031 Sum_probs=45.4
Q ss_pred CCcccHHHHHHhcCCCCeEEEEeecCCCCCCCC--chhhhhhcC--CcCceecCcccccccCCCCCCCCCCHHHHHHHHH
Q 020963 21 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRN--PFQEYQVAH--IPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS 96 (319)
Q Consensus 21 ~~~Is~~~l~~~l~~~~~~iiDvR~~~~~~~r~--~~~~~~~gh--IpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (319)
.+.|+++++.+.-..+=..||.-|.+--.+... ....-..+| +. -.+||...- .-+-.+.+.|+..+.
T Consensus 13 sgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~-------~iT~~dV~~f~~Al~ 84 (130)
T COG3453 13 SGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGG-------GITEADVEAFQRALD 84 (130)
T ss_pred cCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCCC-------CCCHHHHHHHHHHHH
Confidence 467899999988777556899999322111110 000111111 11 234443210 011234667777776
Q ss_pred hCCCCCCCeEEEEcCCCcc
Q 020963 97 ALGLENKDGLVVYDGKGIF 115 (319)
Q Consensus 97 ~~~i~~~~~vvly~~~g~~ 115 (319)
.. ..||+-||.+|.+
T Consensus 85 ea----egPVlayCrsGtR 99 (130)
T COG3453 85 EA----EGPVLAYCRSGTR 99 (130)
T ss_pred Hh----CCCEEeeecCCch
Confidence 64 5799999998865
No 208
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=21.42 E-value=2.8e+02 Score=23.89 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=33.9
Q ss_pred CCCCCeEEEEcC---CCcchhHHHHHHHHHhcCCc--e-EEec---CCHHHHHhCCCCcccCC
Q 020963 100 LENKDGLVVYDG---KGIFSAARVWWMFRVFGHDR--V-WVLD---GGLPRWRASGYDVESSA 153 (319)
Q Consensus 100 i~~~~~vvly~~---~g~~~a~~~~~~l~~~G~~~--v-~~l~---GG~~~W~~~g~p~~~~~ 153 (319)
+.+++.|++.++ .|. +...+...|+..|.+- + .+++ ||.......|.|+.+-.
T Consensus 115 ~~~g~~VlIVDDViTTG~-Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~sl~ 176 (206)
T PRK13809 115 FTPGQTCLVINDMVSSGK-SIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLSSVF 176 (206)
T ss_pred cCCCCEEEEEEeccccCH-HHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEEEEE
Confidence 346688888865 343 4778888999999762 2 3556 44344444677766643
No 209
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=21.41 E-value=93 Score=22.29 Aligned_cols=31 Identities=32% Similarity=0.678 Sum_probs=20.5
Q ss_pred EEEecCCcHHHHHHH-HH----HHhcCCCCceeeeCc
Q 020963 272 VVTACGTGVTACILA-LG----LNRLGKHDVAVYDGS 303 (319)
Q Consensus 272 vivyC~~G~ra~~~~-~~----L~~~G~~~v~~~~Gg 303 (319)
|++.|.+|..++... .. +...|++ +....+.
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~gi~-~~~~~~~ 37 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKELGIE-VEVSAGS 37 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHTTEC-EEEEEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhccCc-eEEEEec
Confidence 789999998777555 44 4557865 4444443
No 210
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=21.25 E-value=1.4e+02 Score=28.97 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHH-hc----CCCCceeeeCcHHHHh
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLN-RL----GKHDVAVYDGSWTEWG 308 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~-~~----G~~~v~~~~Gg~~~W~ 308 (319)
.++.+.|.+.- +..-..++||++|..|-.++..|. .. |-..+..+.+|+.+|.
T Consensus 120 ~~lAe~L~~~~-p~~~~~v~f~~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t 177 (442)
T TIGR03372 120 ALLAKTLAALT-PGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKS 177 (442)
T ss_pred HHHHHHHHHhC-CCCcCEEEEeCCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCC
Confidence 34455555322 222257889999999887766653 33 6556788889888875
No 211
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=21.16 E-value=3.2e+02 Score=24.07 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=29.3
Q ss_pred CHHHHHHHHHhC--CCCCCCeEEEEcCCCcchh----HHHHHHHHHhcCCceEEec
Q 020963 87 SEEAFAAAVSAL--GLENKDGLVVYDGKGIFSA----ARVWWMFRVFGHDRVWVLD 136 (319)
Q Consensus 87 ~~~~~~~~~~~~--~i~~~~~vvly~~~g~~~a----~~~~~~l~~~G~~~v~~l~ 136 (319)
+.+.+.+.++.. .++++..+|+.|......+ +++-.+|...||++|++-.
T Consensus 119 DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ 174 (265)
T COG4822 119 DYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAA 174 (265)
T ss_pred hHHHHHHHHHHhcCCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEE
Confidence 344454444443 2347778888876433222 2345567788999888654
No 212
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=20.95 E-value=2.2e+02 Score=25.55 Aligned_cols=44 Identities=16% Similarity=0.032 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceee
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVY 300 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~ 300 (319)
..++.... -+.++..+++||..-.+.......|+..||.++...
T Consensus 176 ~~le~~~~--~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie~~ 219 (256)
T COG2519 176 NVLEHVSD--ALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIEAV 219 (256)
T ss_pred HHHHHHHH--HhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchhhh
Confidence 44444444 556789999999999999999999999999766543
No 213
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=20.95 E-value=1.2e+02 Score=25.93 Aligned_cols=35 Identities=11% Similarity=0.042 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHhcCCceEEecC
Q 020963 103 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 137 (319)
Q Consensus 103 ~~~vvly~~~g~~~a~~~~~~l~~~G~~~v~~l~G 137 (319)
....|+.-..........|.++...+.+-|-.|..
T Consensus 41 ~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~~ 75 (235)
T PF00102_consen 41 GKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLCS 75 (235)
T ss_dssp TEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEESB
T ss_pred hhhheeecccccccccceehheeeccccceecccc
Confidence 34455553333334667777788877776666654
No 214
>TIGR03089 conserved hypothetical protein TIGR03089. This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=20.92 E-value=2.2e+02 Score=24.69 Aligned_cols=40 Identities=8% Similarity=-0.031 Sum_probs=32.7
Q ss_pred HHHHHHHHH-cCCCCCCCEEEecCCcHHHHHHHHHHHhcCC
Q 020963 255 DELKKRFEQ-EGISLEKPVVTACGTGVTACILALGLNRLGK 294 (319)
Q Consensus 255 ~~l~~~l~~-~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~ 294 (319)
.++.+.|.. .|+.++++|.++|.++..-...++.....|.
T Consensus 38 ~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~ 78 (227)
T TIGR03089 38 AKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGV 78 (227)
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 566777876 6999999999999998887777777777774
No 215
>PRK07678 aminotransferase; Validated
Probab=20.82 E-value=1.5e+02 Score=28.89 Aligned_cols=53 Identities=11% Similarity=0.035 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHh-c-------CCCCceeeeCcHHHHhC
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR-L-------GKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~-~-------G~~~v~~~~Gg~~~W~~ 309 (319)
.++.+.|.+. .+...-++||++|..|..++..|.. + |-+.|..+.||+.+|..
T Consensus 92 ~~lae~l~~~--~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~ 152 (451)
T PRK07678 92 IKLAEKLNEW--LGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSM 152 (451)
T ss_pred HHHHHHHHHh--CCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccH
Confidence 4455555532 2222368899999988877666532 2 34457778899988864
No 216
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=20.81 E-value=1.9e+02 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=23.6
Q ss_pred CCCEEEecCCcH---HHHHHHHHHHhcCCCCceee
Q 020963 269 EKPVVTACGTGV---TACILALGLNRLGKHDVAVY 300 (319)
Q Consensus 269 ~~~vivyC~~G~---ra~~~~~~L~~~G~~~v~~~ 300 (319)
.+.|+|.|..|+ .+-.++..|...|++ |.+|
T Consensus 59 ~~~VlVlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 92 (462)
T PLN03049 59 YRRVLALCGPGNNGGDGLVAARHLHHFGYK-PSIC 92 (462)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCc-eEEE
Confidence 367999997655 566778889899996 6655
No 217
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=20.64 E-value=83 Score=31.40 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=41.1
Q ss_pred cccCCCcccCcccccCCCCCC-----CCHHHHHHHHH-HcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCcee
Q 020963 231 GHVPGSKCIPFPQMLDASQTL-----LPADELKKRFE-QEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAV 299 (319)
Q Consensus 231 ghIpgA~~ip~~~l~~~~~~~-----~~~~~l~~~l~-~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~ 299 (319)
--.|||.+-|+.-.+.....+ .| |+=...|. .++....+||.|.|.+|.-++..+=+.-+.++..|.+
T Consensus 27 vicPGSRSTPLala~~~~~~i~~hv~~D-ERsagFfALGlAKas~rPVavi~TSGTA~ANl~PAViEA~~srvpL 100 (566)
T COG1165 27 VICPGSRSTPLALAAAAHDAITVHVHID-ERSAGFFALGLAKASKRPVAVICTSGTAVANLYPAVIEANLSRVPL 100 (566)
T ss_pred EECCCCCCcHHHHHHHhcCCeEEEEecc-cchHHHHHHhhhhhcCCCEEEEEcCcchhhhccHHHHhhhhcCCce
Confidence 456899988876544332222 11 11112222 2344568899999999998887777766666655543
No 218
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=20.62 E-value=2.7e+02 Score=22.86 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=16.2
Q ss_pred CCCCEEEecCCcHHHHHHHH
Q 020963 268 LEKPVVTACGTGVTACILAL 287 (319)
Q Consensus 268 ~~~~vivyC~~G~ra~~~~~ 287 (319)
.....|+.|.+|.-+++++-
T Consensus 58 ~~d~GIliCGTGiG~~iaAN 77 (151)
T COG0698 58 EADLGILICGTGIGMSIAAN 77 (151)
T ss_pred CCCeeEEEecCChhHHHHhh
Confidence 56678999999988887765
No 219
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=20.54 E-value=8.1e+02 Score=23.97 Aligned_cols=46 Identities=33% Similarity=0.383 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCCCCCEEEecC-CcHHHHHHHHHHHh-cCCCCcee--eeC
Q 020963 255 DELKKRFEQEGISLEKPVVTACG-TGVTACILALGLNR-LGKHDVAV--YDG 302 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~-~G~ra~~~~~~L~~-~G~~~v~~--~~G 302 (319)
+++++.-+ .+.|+..++|.+. .|+.|...+..++. +|+..|.+ +||
T Consensus 202 ~El~~Ik~--~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 202 DELKEIKE--VINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred HHHHHHHh--hcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEEcccC
Confidence 34444444 6788888888876 79999988888865 78765543 444
No 220
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=20.50 E-value=2.4e+02 Score=27.39 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHh--cCCCCceeeeCcHHHHhC
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR--LGKHDVAVYDGSWTEWGA 309 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~--~G~~~v~~~~Gg~~~W~~ 309 (319)
.++.+.|.+.-......-++||++|..|..++..|.. -|-..|..+.||+.+|..
T Consensus 100 ~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~ 156 (451)
T PRK06918 100 IELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTL 156 (451)
T ss_pred HHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccch
Confidence 4555555533211111368999999998877766543 365667788898888864
No 221
>PTZ00110 helicase; Provisional
Probab=20.43 E-value=1.9e+02 Score=28.96 Aligned_cols=48 Identities=17% Similarity=0.022 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHhcCCCCceeeeCcH
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNRLGKHDVAVYDGSW 304 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~~G~~~v~~~~Gg~ 304 (319)
..|.+++.... .....+||||++-..+...+..|+..|+. +..+.|++
T Consensus 364 ~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~~g~~-~~~ihg~~ 411 (545)
T PTZ00110 364 GKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRLDGWP-ALCIHGDK 411 (545)
T ss_pred HHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHHcCCc-EEEEECCC
Confidence 44555555321 25678999999998999999999999986 66677765
No 222
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=20.28 E-value=2.1e+02 Score=27.38 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHh--cCCCCceeeeCcHHHHh
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR--LGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~--~G~~~v~~~~Gg~~~W~ 308 (319)
.++.+.|.+.-...+-.-++||++|..|..++..|.. -|-+.+..+.||+.+|.
T Consensus 79 ~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t 134 (420)
T TIGR00700 79 VALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRT 134 (420)
T ss_pred HHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCc
Confidence 4555555533221222358899999998877776543 46666777888888875
No 223
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=20.28 E-value=1.2e+02 Score=23.79 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=21.8
Q ss_pred EEEecC-CcHHHHHHHHHHHhcCCCCceeeeCcHH
Q 020963 272 VVTACG-TGVTACILALGLNRLGKHDVAVYDGSWT 305 (319)
Q Consensus 272 vivyC~-~G~ra~~~~~~L~~~G~~~v~~~~Gg~~ 305 (319)
|+|.|. +-.||.+|..+++.+.-.++.++-.|..
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~ 35 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIE 35 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 467775 3457777777776643245777777764
No 224
>PRK13530 arsenate reductase; Provisional
Probab=20.21 E-value=1.6e+02 Score=23.29 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=26.2
Q ss_pred CCEEEecC-CcHHHHHHHHHHHhcCCCCceeeeCcHH
Q 020963 270 KPVVTACG-TGVTACILALGLNRLGKHDVAVYDGSWT 305 (319)
Q Consensus 270 ~~vivyC~-~G~ra~~~~~~L~~~G~~~v~~~~Gg~~ 305 (319)
+.|+|.|. +-.||..|-.+++.+.-.++.++-.|..
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 46899996 4568888888887654355777877764
No 225
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.19 E-value=1.1e+02 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=19.4
Q ss_pred ccCHHHHHHHhhcCCcEEEeccCCCc
Q 020963 191 IWTLEQVKRNIEEGTYQLVDARSKAR 216 (319)
Q Consensus 191 ~is~~~l~~~~~~~~~~liDvR~~~e 216 (319)
.|+.+|..+.+. ++.-||||..+.|
T Consensus 7 Pin~eEA~eAie-GGAdIiDVKNP~E 31 (235)
T COG1891 7 PINREEAIEAIE-GGADIIDVKNPAE 31 (235)
T ss_pred cCCHHHHHHHhh-CCCceEeccCccc
Confidence 356777777775 4688999999987
No 226
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=20.03 E-value=2.4e+02 Score=27.36 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCCCCCCEEEecCCcHHHHHHHHHHHh--cCCCCceeeeCcHHHHh
Q 020963 255 DELKKRFEQEGISLEKPVVTACGTGVTACILALGLNR--LGKHDVAVYDGSWTEWG 308 (319)
Q Consensus 255 ~~l~~~l~~~~~~~~~~vivyC~~G~ra~~~~~~L~~--~G~~~v~~~~Gg~~~W~ 308 (319)
.++.+.|.+.-..+.-.-++||++|..|..++..|.. -|-+.+..+.||+.+|.
T Consensus 100 ~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 100 VELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred HHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 4555666533211122468999999988877666533 46666778889988876
Done!