Query 020964
Match_columns 319
No_of_seqs 215 out of 1284
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:32:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3029 Glutathione S-transfer 100.0 6.5E-40 1.4E-44 283.8 20.1 233 85-317 88-369 (370)
2 PRK09481 sspA stringent starva 100.0 7.1E-29 1.5E-33 217.2 18.5 185 86-312 9-196 (211)
3 PRK10387 glutaredoxin 2; Provi 100.0 2.1E-27 4.5E-32 207.4 19.4 204 88-313 1-208 (210)
4 KOG0406 Glutathione S-transfer 100.0 1.4E-27 3.1E-32 206.5 17.3 188 85-313 7-206 (231)
5 PLN02473 glutathione S-transfe 99.9 7.8E-27 1.7E-31 204.5 16.3 196 87-313 2-206 (214)
6 COG0625 Gst Glutathione S-tran 99.9 8.8E-26 1.9E-30 197.5 16.6 189 88-312 1-198 (211)
7 PRK13972 GSH-dependent disulfi 99.9 6.3E-26 1.4E-30 199.1 14.7 187 87-312 1-199 (215)
8 TIGR02182 GRXB Glutaredoxin, G 99.9 5.3E-25 1.2E-29 192.5 19.2 197 89-313 1-207 (209)
9 PRK15113 glutathione S-transfe 99.9 2.4E-25 5.2E-30 195.3 16.8 189 86-314 4-204 (214)
10 PLN02395 glutathione S-transfe 99.9 4.7E-25 1E-29 193.3 17.5 196 87-314 2-206 (215)
11 PRK10542 glutathionine S-trans 99.9 3E-25 6.5E-30 192.4 14.6 182 88-312 1-191 (201)
12 TIGR01262 maiA maleylacetoacet 99.9 4.8E-25 1E-29 192.5 14.9 189 89-312 1-198 (210)
13 PRK10357 putative glutathione 99.9 9.4E-25 2E-29 189.6 16.4 191 88-314 1-196 (202)
14 PRK11752 putative S-transferas 99.9 9.1E-25 2E-29 197.5 16.2 193 84-313 41-253 (264)
15 TIGR00862 O-ClC intracellular 99.9 1.2E-23 2.7E-28 185.9 18.2 174 93-312 16-214 (236)
16 PLN02378 glutathione S-transfe 99.9 8.7E-24 1.9E-28 185.3 15.8 171 92-313 16-194 (213)
17 PTZ00057 glutathione s-transfe 99.9 1.8E-23 3.9E-28 182.2 16.9 182 86-313 3-194 (205)
18 KOG0868 Glutathione S-transfer 99.9 1.5E-23 3.3E-28 171.1 12.8 189 85-311 3-200 (217)
19 KOG4244 Failed axon connection 99.9 1.2E-22 2.5E-27 176.2 17.4 219 82-310 40-274 (281)
20 PLN02817 glutathione dehydroge 99.9 2.4E-22 5.3E-27 181.2 15.6 170 93-313 70-246 (265)
21 cd03197 GST_C_mPGES2 GST_C fam 99.9 2.6E-22 5.7E-27 163.1 14.0 143 169-311 4-148 (149)
22 KOG0867 Glutathione S-transfer 99.9 2.5E-21 5.4E-26 171.0 15.0 188 87-311 2-202 (226)
23 KOG1695 Glutathione S-transfer 99.8 2.6E-19 5.6E-24 154.1 15.8 188 87-313 3-195 (206)
24 KOG4420 Uncharacterized conser 99.8 5.9E-18 1.3E-22 146.1 12.7 227 84-315 23-284 (325)
25 COG2999 GrxB Glutaredoxin 2 [P 99.7 1.3E-16 2.8E-21 130.5 14.2 197 88-311 1-206 (215)
26 PLN02907 glutamate-tRNA ligase 99.7 2E-16 4.4E-21 159.4 15.3 154 88-311 3-159 (722)
27 COG0435 ECM4 Predicted glutath 99.7 2.1E-16 4.6E-21 137.9 12.0 190 84-314 48-282 (324)
28 PF13417 GST_N_3: Glutathione 99.7 9.6E-17 2.1E-21 117.1 8.1 71 90-160 1-73 (75)
29 cd03040 GST_N_mPGES2 GST_N fam 99.7 3.5E-16 7.6E-21 114.6 9.1 73 87-159 1-77 (77)
30 cd03041 GST_N_2GST_N GST_N fam 99.7 3.7E-16 7.9E-21 114.6 8.9 72 87-158 1-77 (77)
31 KOG1422 Intracellular Cl- chan 99.6 5E-15 1.1E-19 124.7 14.9 173 95-314 20-201 (221)
32 KOG3027 Mitochondrial outer me 99.6 2.1E-14 4.5E-19 120.3 16.8 200 96-310 34-249 (257)
33 cd03061 GST_N_CLIC GST_N famil 99.6 2.4E-15 5.2E-20 113.0 9.9 69 94-162 20-90 (91)
34 KOG2903 Predicted glutathione 99.6 2.7E-15 5.8E-20 129.8 11.5 187 85-312 35-281 (319)
35 cd03055 GST_N_Omega GST_N fami 99.6 2.6E-15 5.7E-20 113.2 9.5 83 73-155 4-89 (89)
36 cd03037 GST_N_GRX2 GST_N famil 99.6 2E-15 4.3E-20 108.8 7.9 69 88-156 1-71 (71)
37 cd03059 GST_N_SspA GST_N famil 99.6 3.6E-15 7.7E-20 107.9 8.6 71 88-158 1-73 (73)
38 cd03052 GST_N_GDAP1 GST_N fami 99.6 2.7E-15 5.9E-20 108.8 7.6 68 88-155 1-73 (73)
39 cd03058 GST_N_Tau GST_N family 99.6 6.7E-15 1.4E-19 106.9 8.4 71 88-158 1-74 (74)
40 cd03080 GST_N_Metaxin_like GST 99.6 8.5E-15 1.8E-19 106.8 8.6 68 87-159 1-75 (75)
41 cd03045 GST_N_Delta_Epsilon GS 99.6 9.6E-15 2.1E-19 105.9 7.8 69 88-156 1-74 (74)
42 cd03060 GST_N_Omega_like GST_N 99.6 1.5E-14 3.2E-19 104.3 8.1 66 89-154 2-70 (71)
43 cd03048 GST_N_Ure2p_like GST_N 99.5 2.6E-14 5.7E-19 105.6 8.7 72 87-159 1-80 (81)
44 cd03050 GST_N_Theta GST_N fami 99.5 2.5E-14 5.4E-19 104.5 8.4 71 88-158 1-76 (76)
45 cd03053 GST_N_Phi GST_N family 99.5 3.4E-14 7.5E-19 103.6 8.4 70 88-157 2-76 (76)
46 cd03076 GST_N_Pi GST_N family, 99.5 3.6E-14 7.8E-19 102.9 7.4 71 87-157 1-73 (73)
47 cd03056 GST_N_4 GST_N family, 99.5 5.4E-14 1.2E-18 101.5 7.9 68 88-155 1-73 (73)
48 cd03051 GST_N_GTT2_like GST_N 99.5 4.6E-14 1E-18 102.0 6.8 68 88-155 1-74 (74)
49 cd03038 GST_N_etherase_LigE GS 99.5 6.2E-14 1.3E-18 104.4 7.6 66 94-159 14-84 (84)
50 cd03039 GST_N_Sigma_like GST_N 99.5 7.3E-14 1.6E-18 100.9 7.3 69 88-156 1-72 (72)
51 cd03047 GST_N_2 GST_N family, 99.5 1.7E-13 3.7E-18 99.2 7.7 68 88-155 1-73 (73)
52 cd03049 GST_N_3 GST_N family, 99.5 1.3E-13 2.9E-18 99.7 7.1 68 88-155 1-73 (73)
53 PF13409 GST_N_2: Glutathione 99.4 1.7E-13 3.7E-18 98.5 6.3 63 95-157 1-70 (70)
54 cd03042 GST_N_Zeta GST_N famil 99.4 3.4E-13 7.3E-18 97.4 7.7 68 88-155 1-73 (73)
55 cd03057 GST_N_Beta GST_N famil 99.4 4.1E-13 9E-18 98.2 8.1 71 88-159 1-77 (77)
56 cd03046 GST_N_GTT1_like GST_N 99.4 4.9E-13 1.1E-17 97.3 8.5 71 88-159 1-76 (76)
57 cd03054 GST_N_Metaxin GST_N fa 99.4 4.5E-13 9.7E-18 96.8 8.0 64 89-157 2-72 (72)
58 cd03044 GST_N_EF1Bgamma GST_N 99.4 4.7E-13 1E-17 97.5 8.1 68 89-156 2-74 (75)
59 cd03077 GST_N_Alpha GST_N fami 99.4 6.9E-13 1.5E-17 97.7 8.8 72 88-159 2-77 (79)
60 cd00570 GST_N_family Glutathio 99.4 5.9E-13 1.3E-17 94.2 7.6 68 88-155 1-71 (71)
61 cd03075 GST_N_Mu GST_N family, 99.4 1.3E-12 2.7E-17 97.0 8.2 70 89-158 2-82 (82)
62 TIGR02190 GlrX-dom Glutaredoxi 99.3 1.5E-11 3.2E-16 90.5 9.4 72 84-155 6-79 (79)
63 KOG3028 Translocase of outer m 99.3 3.1E-10 6.7E-15 101.6 19.0 206 96-312 17-237 (313)
64 PF02798 GST_N: Glutathione S- 99.3 2.5E-11 5.3E-16 88.7 8.6 67 88-156 3-76 (76)
65 cd03043 GST_N_1 GST_N family, 99.3 2.4E-11 5.3E-16 88.0 8.4 63 93-155 7-73 (73)
66 cd03196 GST_C_5 GST_C family, 99.2 2.3E-11 5E-16 96.1 7.8 108 167-313 4-112 (115)
67 cd03188 GST_C_Beta GST_C famil 99.2 3.7E-11 8.1E-16 94.0 7.6 69 242-312 42-110 (114)
68 cd03029 GRX_hybridPRX5 Glutare 99.2 1E-10 2.2E-15 84.4 8.8 69 87-155 2-72 (72)
69 cd03186 GST_C_SspA GST_N famil 99.2 8E-11 1.7E-15 91.4 8.7 69 242-312 34-103 (107)
70 cd03187 GST_C_Phi GST_C family 99.2 5.9E-11 1.3E-15 93.6 7.8 71 242-312 44-114 (118)
71 cd03189 GST_C_GTT1_like GST_C 99.2 7.4E-11 1.6E-15 93.3 8.4 66 243-310 54-119 (119)
72 cd03180 GST_C_2 GST_C family, 99.2 1E-10 2.3E-15 90.9 8.7 68 242-311 42-109 (110)
73 PF00043 GST_C: Glutathione S- 99.2 3.9E-11 8.5E-16 90.9 5.4 71 240-310 25-95 (95)
74 cd03202 GST_C_etherase_LigE GS 99.2 1.7E-10 3.8E-15 92.3 9.4 69 240-308 55-123 (124)
75 cd03079 GST_N_Metaxin2 GST_N f 99.2 9.8E-11 2.1E-15 84.5 7.1 64 88-157 11-74 (74)
76 cd03190 GST_C_ECM4_like GST_C 99.2 1E-10 2.2E-15 95.9 8.1 73 242-314 36-114 (142)
77 cd03177 GST_C_Delta_Epsilon GS 99.2 3E-10 6.4E-15 89.9 10.2 72 241-313 36-107 (118)
78 cd03185 GST_C_Tau GST_C family 99.1 1.5E-10 3.3E-15 92.4 8.2 72 243-314 35-111 (126)
79 PF13410 GST_C_2: Glutathione 99.1 1.1E-10 2.3E-15 83.4 5.6 64 242-305 5-69 (69)
80 cd03182 GST_C_GTT2_like GST_C 99.1 2.4E-10 5.1E-15 90.0 7.8 68 242-311 48-116 (117)
81 PRK10638 glutaredoxin 3; Provi 99.1 5.8E-10 1.3E-14 82.8 8.9 69 87-155 3-74 (83)
82 cd03191 GST_C_Zeta GST_C famil 99.1 3.2E-10 6.9E-15 90.0 7.8 69 244-314 45-115 (121)
83 cd03184 GST_C_Omega GST_C fami 99.1 5.4E-10 1.2E-14 89.3 7.9 74 240-313 29-108 (124)
84 cd03178 GST_C_Ure2p_like GST_C 99.0 4.1E-10 9E-15 88.1 6.7 71 242-313 39-109 (113)
85 cd03078 GST_N_Metaxin1_like GS 99.0 1.7E-09 3.7E-14 78.2 8.1 58 95-157 15-72 (73)
86 cd03211 GST_C_Metaxin2 GST_C f 99.0 1E-09 2.2E-14 88.1 7.3 70 238-307 52-126 (126)
87 cd03206 GST_C_7 GST_C family, 99.0 1.7E-09 3.6E-14 83.0 7.4 68 242-311 32-99 (100)
88 cd03183 GST_C_Theta GST_C fami 99.0 2.7E-09 5.9E-14 85.3 8.6 70 242-312 44-116 (126)
89 cd03204 GST_C_GDAP1 GST_C fami 99.0 1.6E-09 3.6E-14 84.7 7.1 71 241-311 27-110 (111)
90 cd03198 GST_C_CLIC GST_C famil 99.0 2.2E-09 4.8E-14 86.6 7.7 74 240-313 26-119 (134)
91 cd03027 GRX_DEP Glutaredoxin ( 99.0 4.3E-09 9.4E-14 76.0 8.5 66 87-152 2-70 (73)
92 cd03179 GST_C_1 GST_C family, 99.0 1.3E-09 2.7E-14 84.0 5.8 64 242-307 42-105 (105)
93 cd03200 GST_C_JTV1 GST_C famil 98.9 5.3E-09 1.1E-13 79.9 8.5 57 247-308 39-95 (96)
94 TIGR02189 GlrX-like_plant Glut 98.9 6.9E-09 1.5E-13 79.7 9.1 71 84-154 6-82 (99)
95 TIGR02183 GRXA Glutaredoxin, G 98.9 7.4E-09 1.6E-13 77.4 8.7 72 88-159 2-83 (86)
96 PF14497 GST_C_3: Glutathione 98.9 1.3E-09 2.7E-14 83.6 4.6 65 241-308 33-99 (99)
97 cd03193 GST_C_Metaxin GST_C fa 98.9 2.7E-09 5.9E-14 79.9 6.3 65 243-307 19-88 (88)
98 COG0695 GrxC Glutaredoxin and 98.9 8E-09 1.7E-13 76.1 8.5 70 87-156 2-76 (80)
99 cd03207 GST_C_8 GST_C family, 98.9 2.7E-09 5.8E-14 82.2 6.3 69 242-313 29-97 (103)
100 cd03181 GST_C_EFB1gamma GST_C 98.9 3.6E-09 7.9E-14 84.0 7.0 72 242-313 39-111 (123)
101 cd03201 GST_C_DHAR GST_C famil 98.9 6.3E-09 1.4E-13 82.9 8.2 72 242-313 29-105 (121)
102 cd03418 GRX_GRXb_1_3_like Glut 98.9 1.6E-08 3.5E-13 73.2 8.8 69 87-155 1-73 (75)
103 cd02066 GRX_family Glutaredoxi 98.9 1.6E-08 3.5E-13 71.8 8.6 67 87-153 1-70 (72)
104 cd03209 GST_C_Mu GST_C family, 98.9 6.9E-09 1.5E-13 82.5 7.1 70 243-313 35-104 (121)
105 PHA03050 glutaredoxin; Provisi 98.9 1.5E-08 3.2E-13 79.0 8.7 69 84-152 11-88 (108)
106 PRK11200 grxA glutaredoxin 1; 98.8 2.3E-08 5E-13 74.5 9.2 73 87-159 2-84 (85)
107 PRK10329 glutaredoxin-like pro 98.8 1.7E-08 3.6E-13 74.6 8.0 59 87-145 2-62 (81)
108 cd00299 GST_C_family Glutathio 98.8 6E-09 1.3E-13 78.9 5.6 65 242-306 35-100 (100)
109 cd03212 GST_C_Metaxin1_3 GST_C 98.8 7.6E-09 1.7E-13 84.3 6.5 70 240-309 61-135 (137)
110 TIGR00365 monothiol glutaredox 98.8 3.4E-08 7.3E-13 75.6 8.9 72 84-155 10-89 (97)
111 cd03210 GST_C_Pi GST_C family, 98.8 1.1E-08 2.5E-13 81.9 6.0 70 244-314 36-108 (126)
112 cd03203 GST_C_Lambda GST_C fam 98.7 3.3E-08 7.1E-13 78.6 7.5 65 247-312 34-105 (120)
113 TIGR02181 GRX_bact Glutaredoxi 98.7 5.4E-08 1.2E-12 71.3 8.0 69 88-156 1-72 (79)
114 cd03195 GST_C_4 GST_C family, 98.7 4.6E-08 1E-12 77.0 8.0 68 242-314 41-109 (114)
115 cd03419 GRX_GRXh_1_2_like Glut 98.7 7E-08 1.5E-12 71.0 8.5 70 87-156 1-76 (82)
116 TIGR02196 GlrX_YruB Glutaredox 98.7 7.1E-08 1.5E-12 68.9 8.0 68 87-154 1-73 (74)
117 cd03028 GRX_PICOT_like Glutare 98.7 8.9E-08 1.9E-12 72.2 8.9 71 84-154 6-84 (90)
118 cd03208 GST_C_Alpha GST_C fami 98.7 2.5E-08 5.4E-13 81.3 6.0 68 246-314 42-111 (137)
119 cd03194 GST_C_3 GST_C family, 98.7 3.7E-08 8E-13 77.6 6.8 68 244-316 45-112 (114)
120 TIGR02194 GlrX_NrdH Glutaredox 98.7 7.9E-08 1.7E-12 69.2 7.1 55 88-142 1-57 (72)
121 PF00462 Glutaredoxin: Glutare 98.7 6.3E-08 1.4E-12 67.1 6.2 57 88-144 1-60 (60)
122 KOG1752 Glutaredoxin and relat 98.6 2.7E-07 5.8E-12 71.0 8.4 71 84-154 12-88 (104)
123 cd02976 NrdH NrdH-redoxin (Nrd 98.6 2.9E-07 6.4E-12 65.5 7.7 61 87-147 1-64 (73)
124 PRK10824 glutaredoxin-4; Provi 98.6 2.9E-07 6.2E-12 72.3 8.1 71 84-154 13-91 (115)
125 cd03192 GST_C_Sigma_like GST_C 98.6 6.3E-08 1.4E-12 74.5 4.1 63 243-306 39-104 (104)
126 TIGR02180 GRX_euk Glutaredoxin 98.6 3.7E-07 8E-12 67.3 8.0 69 88-156 1-77 (84)
127 TIGR02200 GlrX_actino Glutared 98.5 7.4E-07 1.6E-11 64.4 8.5 69 87-155 1-76 (77)
128 cd03205 GST_C_6 GST_C family, 98.4 6.2E-07 1.4E-11 68.4 5.3 63 241-306 35-98 (98)
129 PTZ00062 glutaredoxin; Provisi 98.2 8.9E-06 1.9E-10 70.5 8.6 71 83-153 110-188 (204)
130 cd03031 GRX_GRX_like Glutaredo 98.1 2.5E-05 5.4E-10 64.1 8.8 67 87-153 1-80 (147)
131 PRK12759 bifunctional gluaredo 98.0 2.3E-05 5E-10 75.3 8.7 67 86-152 2-79 (410)
132 PF10568 Tom37: Outer mitochon 97.7 0.00022 4.7E-09 51.3 7.6 56 95-155 13-72 (72)
133 cd02973 TRX_GRX_like Thioredox 97.7 0.00016 3.4E-09 50.8 6.4 58 87-146 2-65 (67)
134 cd03199 GST_C_GRX2 GST_C famil 97.6 0.00025 5.3E-09 56.6 7.1 66 243-312 60-125 (128)
135 PF04399 Glutaredoxin2_C: Glut 97.6 0.00043 9.3E-09 55.6 8.2 67 242-312 58-124 (132)
136 TIGR00412 redox_disulf_2 small 97.0 0.0043 9.3E-08 44.9 7.5 55 88-145 3-61 (76)
137 COG0278 Glutaredoxin-related p 97.0 0.0033 7.1E-08 47.4 6.6 72 84-155 13-93 (105)
138 PF14834 GST_C_4: Glutathione 96.9 0.0065 1.4E-07 47.2 8.2 65 242-311 42-107 (117)
139 cd03036 ArsC_like Arsenate Red 96.9 0.0013 2.9E-08 51.3 4.1 33 88-120 1-33 (111)
140 cd02977 ArsC_family Arsenate R 96.8 0.0015 3.3E-08 50.4 4.2 32 88-119 1-32 (105)
141 PRK01655 spxA transcriptional 96.8 0.002 4.4E-08 51.9 4.7 34 87-120 1-34 (131)
142 cd03030 GRX_SH3BGR Glutaredoxi 96.7 0.016 3.4E-07 43.7 8.8 66 88-153 2-80 (92)
143 cd03032 ArsC_Spx Arsenate Redu 96.6 0.0033 7.2E-08 49.4 4.7 34 87-120 1-34 (115)
144 TIGR00411 redox_disulf_1 small 96.5 0.019 4E-07 41.5 7.7 56 87-142 2-62 (82)
145 COG4545 Glutaredoxin-related p 96.4 0.013 2.8E-07 41.7 5.8 59 88-146 4-78 (85)
146 PF05768 DUF836: Glutaredoxin- 96.4 0.027 5.8E-07 41.2 7.9 54 87-141 1-57 (81)
147 TIGR01617 arsC_related transcr 96.3 0.0052 1.1E-07 48.4 4.3 33 88-120 1-33 (117)
148 PRK13344 spxA transcriptional 96.3 0.0094 2E-07 48.1 5.6 33 87-119 1-33 (132)
149 PRK12559 transcriptional regul 96.3 0.007 1.5E-07 48.8 4.7 33 87-119 1-33 (131)
150 cd03026 AhpF_NTD_C TRX-GRX-lik 95.8 0.031 6.7E-07 41.8 6.2 58 87-145 15-77 (89)
151 cd03033 ArsC_15kD Arsenate Red 95.8 0.016 3.4E-07 45.5 4.5 33 87-119 1-33 (113)
152 cd03035 ArsC_Yffb Arsenate Red 95.7 0.015 3.3E-07 44.9 4.2 32 88-119 1-32 (105)
153 PF13192 Thioredoxin_3: Thiore 95.7 0.095 2.1E-06 37.7 8.1 58 87-147 2-63 (76)
154 PHA02125 thioredoxin-like prot 95.5 0.044 9.4E-07 39.4 5.7 53 87-142 1-54 (75)
155 cd01659 TRX_superfamily Thiore 94.8 0.085 1.9E-06 34.6 5.2 52 88-139 1-59 (69)
156 TIGR01616 nitro_assoc nitrogen 94.0 0.097 2.1E-06 41.8 4.7 33 87-119 2-34 (126)
157 COG1393 ArsC Arsenate reductas 94.0 0.099 2.1E-06 41.2 4.6 33 87-119 2-34 (117)
158 KOG0911 Glutaredoxin-related p 93.8 0.3 6.4E-06 42.5 7.5 72 84-155 137-216 (227)
159 PRK10853 putative reductase; P 93.5 0.12 2.5E-06 40.9 4.3 33 87-119 1-33 (118)
160 PRK10026 arsenate reductase; P 93.3 0.14 3.1E-06 41.7 4.6 34 86-119 2-35 (141)
161 PF11287 DUF3088: Protein of u 92.6 0.43 9.3E-06 36.9 6.0 65 95-159 23-108 (112)
162 cd03034 ArsC_ArsC Arsenate Red 92.5 0.19 4.2E-06 39.1 4.2 32 88-119 1-32 (112)
163 TIGR00014 arsC arsenate reduct 92.2 0.22 4.9E-06 38.9 4.2 32 88-119 1-32 (114)
164 PF11801 Tom37_C: Tom37 C-term 91.1 0.43 9.3E-06 40.1 5.1 40 247-286 112-155 (168)
165 TIGR01295 PedC_BrcD bacterioci 90.6 1.2 2.7E-05 35.2 7.0 58 87-144 26-103 (122)
166 cd02947 TRX_family TRX family; 88.6 3.1 6.8E-05 29.5 7.5 56 87-143 13-75 (93)
167 cd02975 PfPDO_like_N Pyrococcu 87.8 1.2 2.6E-05 34.6 5.0 51 87-139 24-81 (113)
168 PF00085 Thioredoxin: Thioredo 87.0 5.5 0.00012 29.3 8.2 70 87-156 20-102 (103)
169 cd02949 TRX_NTR TRX domain, no 86.0 4.2 9.1E-05 30.2 7.0 58 87-144 16-80 (97)
170 KOG1147 Glutamyl-tRNA syntheta 86.0 0.56 1.2E-05 45.9 2.6 57 248-304 93-150 (712)
171 TIGR03143 AhpF_homolog putativ 84.8 2.4 5.2E-05 42.5 6.6 58 86-145 478-541 (555)
172 TIGR03140 AhpF alkyl hydropero 83.2 2.9 6.2E-05 41.6 6.3 71 85-157 118-198 (515)
173 TIGR02187 GlrX_arch Glutaredox 83.0 3.9 8.5E-05 35.6 6.4 54 87-140 136-193 (215)
174 PF03960 ArsC: ArsC family; I 82.8 1.8 4E-05 33.3 3.9 30 91-120 1-30 (110)
175 PF04908 SH3BGR: SH3-binding, 82.6 12 0.00027 28.4 8.2 67 87-153 2-86 (99)
176 PRK15317 alkyl hydroperoxide r 82.5 3.4 7.4E-05 41.0 6.6 72 85-158 117-198 (517)
177 PTZ00051 thioredoxin; Provisio 81.2 9.3 0.0002 28.1 7.2 56 87-144 21-84 (98)
178 PHA03075 glutaredoxin-like pro 81.1 2.2 4.7E-05 33.3 3.6 69 85-158 2-70 (123)
179 cd02984 TRX_PICOT TRX domain, 80.9 5.3 0.00011 29.4 5.7 58 87-144 17-81 (97)
180 cd02955 SSP411 TRX domain, SSP 79.1 8.3 0.00018 30.6 6.5 60 88-147 19-97 (124)
181 PRK10996 thioredoxin 2; Provis 78.2 22 0.00047 28.6 8.9 58 87-144 55-119 (139)
182 cd02963 TRX_DnaJ TRX domain, D 77.8 17 0.00036 27.8 7.8 56 87-144 27-92 (111)
183 TIGR01068 thioredoxin thioredo 77.8 17 0.00037 26.4 7.7 57 87-143 17-80 (101)
184 cd02989 Phd_like_TxnDC9 Phosdu 77.5 7.2 0.00016 30.2 5.7 57 87-145 25-89 (113)
185 cd02948 TRX_NDPK TRX domain, T 77.1 19 0.00042 26.9 7.9 58 87-144 20-84 (102)
186 cd02959 ERp19 Endoplasmic reti 76.7 9.8 0.00021 29.6 6.3 58 88-145 23-91 (117)
187 PTZ00443 Thioredoxin domain-co 76.5 47 0.001 29.2 11.1 75 87-161 55-142 (224)
188 PRK09381 trxA thioredoxin; Pro 73.7 32 0.00069 25.8 8.4 59 87-145 24-89 (109)
189 COG3019 Predicted metal-bindin 73.4 19 0.0004 29.2 6.9 73 86-158 26-104 (149)
190 cd02954 DIM1 Dim1 family; Dim1 73.2 12 0.00027 29.2 5.9 58 88-145 18-82 (114)
191 TIGR02187 GlrX_arch Glutaredox 72.7 12 0.00027 32.4 6.5 58 86-143 21-89 (215)
192 PF09635 MetRS-N: MetRS-N bind 71.4 3.2 7E-05 32.7 2.2 29 132-160 34-64 (122)
193 KOG2824 Glutaredoxin-related p 71.0 9.6 0.00021 34.4 5.3 69 85-153 130-211 (281)
194 cd02950 TxlA TRX-like protein 70.7 47 0.001 26.7 9.1 57 88-144 24-90 (142)
195 cd02951 SoxW SoxW family; SoxW 70.4 18 0.00039 28.1 6.5 18 87-104 17-34 (125)
196 cd02956 ybbN ybbN protein fami 69.2 29 0.00064 25.2 7.1 56 88-143 16-78 (96)
197 cd02996 PDI_a_ERp44 PDIa famil 68.3 18 0.00038 27.3 5.9 54 87-142 21-89 (108)
198 PF06110 DUF953: Eukaryotic pr 67.7 14 0.00031 29.1 5.2 55 94-148 36-106 (119)
199 PHA02278 thioredoxin-like prot 67.4 37 0.00081 25.8 7.4 58 88-145 18-86 (103)
200 cd02953 DsbDgamma DsbD gamma f 66.3 19 0.00042 26.8 5.7 53 87-139 14-78 (104)
201 cd02957 Phd_like Phosducin (Ph 64.6 30 0.00064 26.4 6.5 56 88-146 28-91 (113)
202 KOG3425 Uncharacterized conser 61.7 23 0.00051 27.9 5.2 64 94-157 43-122 (128)
203 cd02994 PDI_a_TMX PDIa family, 61.6 35 0.00075 25.1 6.3 56 87-142 19-82 (101)
204 KOG0190 Protein disulfide isom 59.3 35 0.00076 33.7 7.2 75 88-162 46-136 (493)
205 cd02997 PDI_a_PDIR PDIa family 59.0 45 0.00098 24.4 6.6 57 87-143 20-87 (104)
206 cd02962 TMX2 TMX2 family; comp 58.3 48 0.001 27.2 6.9 58 88-145 51-122 (152)
207 cd02952 TRP14_like Human TRX-r 58.0 48 0.001 26.0 6.6 59 88-146 25-105 (119)
208 cd03002 PDI_a_MPD1_like PDI fa 57.4 49 0.0011 24.6 6.6 53 87-139 21-80 (109)
209 PF13098 Thioredoxin_2: Thiore 57.3 12 0.00027 28.2 3.2 37 86-122 7-50 (112)
210 cd03003 PDI_a_ERdj5_N PDIa fam 56.4 46 0.001 24.5 6.2 56 87-142 21-83 (101)
211 cd02985 TRX_CDSP32 TRX family, 56.1 68 0.0015 24.0 7.1 57 88-144 19-84 (103)
212 COG3011 Predicted thiol-disulf 54.0 61 0.0013 26.2 6.6 73 86-158 8-87 (137)
213 cd03004 PDI_a_ERdj5_C PDIa fam 52.5 35 0.00076 25.3 5.0 53 87-139 22-79 (104)
214 cd02965 HyaE HyaE family; HyaE 52.5 65 0.0014 25.0 6.4 61 86-146 29-98 (111)
215 PF13728 TraF: F plasmid trans 52.4 50 0.0011 28.8 6.5 54 86-139 122-189 (215)
216 PRK11657 dsbG disulfide isomer 52.0 24 0.00052 31.6 4.5 23 86-108 119-141 (251)
217 cd02995 PDI_a_PDI_a'_C PDIa fa 51.9 47 0.001 24.3 5.6 53 87-139 21-79 (104)
218 cd02993 PDI_a_APS_reductase PD 51.2 52 0.0011 24.8 5.8 53 87-139 24-84 (109)
219 cd02987 Phd_like_Phd Phosducin 51.1 61 0.0013 27.2 6.6 56 88-146 87-150 (175)
220 cd03006 PDI_a_EFP1_N PDIa fami 49.4 55 0.0012 25.3 5.7 56 87-142 32-95 (113)
221 cd02961 PDI_a_family Protein D 48.8 81 0.0018 22.4 6.4 54 86-139 17-77 (101)
222 cd03020 DsbA_DsbC_DsbG DsbA fa 48.2 25 0.00053 29.9 3.9 24 85-108 78-101 (197)
223 cd02999 PDI_a_ERp44_like PDIa 48.1 89 0.0019 23.3 6.6 52 87-139 21-78 (100)
224 PRK10877 protein disulfide iso 46.5 31 0.00066 30.5 4.3 25 85-109 108-132 (232)
225 PRK13728 conjugal transfer pro 46.4 58 0.0013 27.7 5.7 44 88-139 73-120 (181)
226 cd03005 PDI_a_ERp46 PDIa famil 44.9 86 0.0019 22.8 6.1 56 87-142 19-84 (102)
227 PTZ00102 disulphide isomerase; 44.7 1.3E+02 0.0027 29.2 8.7 75 86-160 51-140 (477)
228 cd03065 PDI_b_Calsequestrin_N 42.2 1E+02 0.0022 24.2 6.2 34 109-144 64-100 (120)
229 TIGR00385 dsbE periplasmic pro 41.8 97 0.0021 25.6 6.5 31 88-118 67-100 (173)
230 COG5494 Predicted thioredoxin/ 41.4 76 0.0016 27.7 5.6 70 86-155 11-85 (265)
231 TIGR01130 ER_PDI_fam protein d 40.1 1.5E+02 0.0032 28.4 8.3 71 87-159 21-110 (462)
232 PF04134 DUF393: Protein of un 38.6 92 0.002 23.6 5.5 67 91-157 2-77 (114)
233 KOG2501 Thioredoxin, nucleored 37.9 88 0.0019 25.9 5.3 38 86-123 33-79 (157)
234 KOG0910 Thioredoxin-like prote 37.3 1.3E+02 0.0028 24.8 6.1 57 88-144 65-128 (150)
235 cd03000 PDI_a_TMX3 PDIa family 36.7 1.3E+02 0.0029 22.2 6.0 53 87-139 18-78 (104)
236 PLN02309 5'-adenylylsulfate re 35.8 1.7E+02 0.0036 28.8 7.8 53 87-139 368-428 (457)
237 cd02988 Phd_like_VIAF Phosduci 35.3 1.1E+02 0.0025 26.0 5.9 54 88-145 106-166 (192)
238 cd02998 PDI_a_ERp38 PDIa famil 34.6 1.3E+02 0.0028 21.8 5.6 53 87-139 21-81 (105)
239 PF14595 Thioredoxin_9: Thiore 33.8 50 0.0011 26.3 3.3 53 85-139 42-103 (129)
240 KOG1668 Elongation factor 1 be 33.8 43 0.00094 29.5 3.0 55 249-309 10-64 (231)
241 cd02970 PRX_like2 Peroxiredoxi 33.3 74 0.0016 25.0 4.3 54 86-141 24-89 (149)
242 TIGR01126 pdi_dom protein disu 33.0 65 0.0014 23.3 3.7 54 86-139 15-75 (102)
243 cd02972 DsbA_family DsbA famil 32.2 53 0.0011 23.2 3.0 22 88-109 1-22 (98)
244 PF09413 DUF2007: Domain of un 32.1 60 0.0013 22.2 3.1 32 88-119 1-32 (67)
245 TIGR00424 APS_reduc 5'-adenyly 32.0 2.3E+02 0.005 27.9 8.1 52 88-139 375-434 (463)
246 COG3118 Thioredoxin domain-con 31.2 1.5E+02 0.0033 27.3 6.2 74 87-160 46-132 (304)
247 cd03001 PDI_a_P5 PDIa family, 30.5 2.1E+02 0.0045 20.6 6.3 53 87-139 21-78 (103)
248 TIGR02681 phage_pRha phage reg 29.3 56 0.0012 25.2 2.8 25 134-158 2-27 (108)
249 PF01323 DSBA: DSBA-like thior 28.4 86 0.0019 26.0 4.1 36 87-122 1-41 (193)
250 cd03023 DsbA_Com1_like DsbA fa 27.9 69 0.0015 25.2 3.3 23 86-108 7-29 (154)
251 COG2761 FrnE Predicted dithiol 27.3 1.3E+02 0.0028 26.5 4.9 59 86-159 6-68 (225)
252 TIGR02740 TraF-like TraF-like 26.8 2.8E+02 0.0062 25.0 7.3 53 87-139 169-235 (271)
253 PTZ00062 glutaredoxin; Provisi 26.6 4.2E+02 0.0091 22.9 9.3 65 88-159 21-95 (204)
254 PF03190 Thioredox_DsbH: Prote 25.2 1.1E+02 0.0025 25.4 4.1 58 89-146 42-118 (163)
255 cd01976 Nitrogenase_MoFe_alpha 24.1 6.5E+02 0.014 24.2 13.3 94 85-182 172-266 (421)
256 PF13462 Thioredoxin_4: Thiore 23.5 1E+02 0.0022 24.7 3.5 22 85-106 13-34 (162)
257 PF09868 DUF2095: Uncharacteri 23.4 42 0.00091 26.2 1.0 60 98-157 24-90 (128)
258 KOG0907 Thioredoxin [Posttrans 22.9 3.5E+02 0.0075 20.6 6.2 54 90-145 27-88 (106)
259 PF12062 HSNSD: heparan sulfat 22.6 2.6E+02 0.0056 27.5 6.4 52 86-147 61-117 (487)
260 cd04911 ACT_AKiii-YclM-BS_1 AC 22.3 3E+02 0.0066 19.7 5.9 23 96-118 15-37 (76)
261 cd03019 DsbA_DsbA DsbA family, 21.8 1.2E+02 0.0026 24.7 3.7 23 85-107 16-38 (178)
262 PRK13703 conjugal pilus assemb 21.6 2.8E+02 0.0061 24.8 6.1 34 86-119 145-182 (248)
263 PF00148 Oxidored_nitro: Nitro 21.1 5.3E+02 0.011 24.3 8.4 96 85-185 144-243 (398)
264 PF11732 Thoc2: Transcription- 21.0 1.3E+02 0.0028 21.7 3.1 35 273-307 42-76 (77)
265 cd03009 TryX_like_TryX_NRX Try 20.8 3.6E+02 0.0079 20.6 6.1 19 88-106 22-40 (131)
No 1
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=100.00 E-value=6.5e-40 Score=283.81 Aligned_cols=233 Identities=58% Similarity=1.004 Sum_probs=209.9
Q ss_pred CCcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechHHHHHHHHh--------
Q 020964 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQ-------- 156 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~-------- 156 (319)
+-+++||+|+.||||.|||.+|.+.||+|++++|++..+.+++++.+.+||+|...|++|.||..||.-|..
T Consensus 88 ~L~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q~ 167 (370)
T KOG3029|consen 88 PLDLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKRQD 167 (370)
T ss_pred CceEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccccccccccEEEeccceechhHHHHHHHHHHhccCCCC
Confidence 358999999999999999999999999999999999999999999999999999999999999999987632
Q ss_pred ------HcCCCC-----------C------------C-CCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhh
Q 020964 157 ------KLTPKR-----------K------------A-DSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYI 206 (319)
Q Consensus 157 ------~~~~~~-----------~------------~-~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (319)
.||... . + ..-..+.+.+.|..|+|+++.+.++|++|++..+.++.|+++
T Consensus 168 l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFewf 247 (370)
T KOG3029|consen 168 LGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEWF 247 (370)
T ss_pred HHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHHH
Confidence 343100 0 0 001113588999999999999999999999999999999999
Q ss_pred hccCC----CChhHHHHHHhhhhHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHhC-CCCccCCCCCChhhHHhhhhh
Q 020964 207 TSSGN----FSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALN-GREFLGGSKPNLADLAVFGVL 281 (319)
Q Consensus 207 ~~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~fL~Gd~~T~ADi~l~~~L 281 (319)
...++ |+..|+..+.|.|...||.++|.+++++++.+.++.++++++.|...|+ +++|++|++|++||+.+|++|
T Consensus 248 ~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGvl 327 (370)
T KOG3029|consen 248 SQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGVL 327 (370)
T ss_pred HHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhhh
Confidence 99998 8899999999999999999999999999999999999999999999995 679999999999999999999
Q ss_pred hhhhhccCccccccCCcHHHHHHHHHHhhCcc------cchh
Q 020964 282 RPIRYLRSGRDMVEHTRIGEWYTRMERVVGES------SRIK 317 (319)
Q Consensus 282 ~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~------~~~~ 317 (319)
..+.....+.++.....|.+|+-||++..+.+ +|++
T Consensus 328 ~sm~gc~afkd~~q~t~I~eW~~rmealV~e~~g~~~~sr~~ 369 (370)
T KOG3029|consen 328 RSMEGCQAFKDCLQNTSIGEWYYRMEALVEENRGQLQRSRIE 369 (370)
T ss_pred hHhhhhhHHHHHHhcchHHHHHHHHHHHHhccccchhhcccc
Confidence 99998888888888999999999999999998 7775
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.96 E-value=7.1e-29 Score=217.23 Aligned_cols=185 Identities=15% Similarity=0.174 Sum_probs=140.3
Q ss_pred CcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-h-hhhcCCccccEEEECCeEeechHHHHHHHHhHcCCCC-
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR- 162 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~- 162 (319)
.+++||+++.||||++|+++|.++|++|+.+.++..+++ + +++||.++||+|+++|..|+||.+|++||+++|++..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l 88 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHPPL 88 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCCCC
Confidence 469999999999999999999999999999999976544 3 4589999999999999999999999999999998643
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCch
Q 020964 163 KADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNIT 242 (319)
Q Consensus 163 ~~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (319)
.|..+.+++..+.|..+++..+...... +. . ......+
T Consensus 89 ~p~~~~~ra~~~~~~~~~~~~~~~~~~~-~~---------------~--------------------------~~~~~~~ 126 (211)
T PRK09481 89 MPVYPVARGESRLMMHRIEKDWYSLMNK-IV---------------N--------------------------GSASEAD 126 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH-Hh---------------c--------------------------CCHHHHH
Confidence 2333333466666766655432211100 00 0 0001123
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCc
Q 020964 243 DERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 243 ~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~ 312 (319)
...+.+...+..+++.|++++||+||++|+||+++++++.++...+.......+|+|.+|+++|.++|..
T Consensus 127 ~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~rp~~ 196 (211)
T PRK09481 127 AARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRLPVLGIELSGPGAKELKGYMTRVFERDSF 196 (211)
T ss_pred HHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHhccHHH
Confidence 4566788889999999999999999999999999999998776543211124689999999999999874
No 3
>PRK10387 glutaredoxin 2; Provisional
Probab=99.96 E-value=2.1e-27 Score=207.41 Aligned_cols=204 Identities=17% Similarity=0.237 Sum_probs=143.8
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh-hhhhhcCCccccEEE-ECCeEeechHHHHHHHHhHcCCCCCCC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIKWSEYKKVPILM-VDGEQLVDSSAIIDQLDQKLTPKRKAD 165 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~-~~~~~~~~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~~~~ 165 (319)
++||++..||||+||+++|+++||+|+.+.++.... ...+.+|.++||+|+ ++|..|+||.+|++||+++|++..+.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l~- 79 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEATPIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKPLLT- 79 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhhHHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCccCC-
Confidence 589999999999999999999999999999875432 246688999999994 78999999999999999999865432
Q ss_pred CCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhh--hhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCchH
Q 020964 166 SPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEA--LESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITD 243 (319)
Q Consensus 166 ~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (319)
++++...++|.+++...+...+.+.+.....+. .+... ..+........+.. .......++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--------~~~~~~~~~ 142 (210)
T PRK10387 80 -GKRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSAR--------QYFIDKKEASIGDF--------DALLAHTPG 142 (210)
T ss_pred -CcccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHH--------HHHHHhHHhccCCH--------HHHHhcCHH
Confidence 346788888988887666554433221110000 00000 00000000000000 000011235
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCcc
Q 020964 244 ERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 244 ~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
..+.+.+.|+.+++.|++ +||+||++|+||+++++++.++..... +..+|+|.+|++||.++++.+
T Consensus 143 ~~~~~~~~l~~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~~---~~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 143 LIKEINADLRALDPLIVK-PNAVNGELSTDDIHLFPILRNLTLVKG---IEWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHHHHHHHHHHHHHHhcC-ccccCCCCCHHHHHHHHHHhcceeecC---CCCCHHHHHHHHHHHHHhCCC
Confidence 678899999999999986 999999999999999999998775432 234699999999999999864
No 4
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-27 Score=206.48 Aligned_cols=188 Identities=22% Similarity=0.311 Sum_probs=149.6
Q ss_pred CCcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhhh--hhc-CCccccEEEECCeEeechHHHHHHHHhHcCC-
Q 020964 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEI--KWS-EYKKVPILMVDGEQLVDSSAIIDQLDQKLTP- 160 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~--~~~-~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~- 160 (319)
++.++||++..|||++|++++|.+|||+|++++.|..+++++ +.| +.++||+|+++|++|+||..|++||++++++
T Consensus 7 ~~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 7 DGTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred CCeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 367999999999999999999999999999999999887764 477 8999999999999999999999999999995
Q ss_pred CC-CCCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhc
Q 020964 161 KR-KADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKY 239 (319)
Q Consensus 161 ~~-~~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 239 (319)
.. +|..|-+++.++.|..++|..+.....-. +. ..+..
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~-~~----------------------------------------~~~~e 125 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYIDKKVFFVGRFV-VA----------------------------------------AKGGE 125 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHH-Hh----------------------------------------hcCch
Confidence 22 35555567999999999998765442211 10 01112
Q ss_pred CchHHHHHHHHHHHHHHHHhC-CCCccCCCCCChhhHHhhhhhhhhhhccC------ccccccCCcHHHHHHHHHHhhCc
Q 020964 240 NITDERAALYEAAETWVDALN-GREFLGGSKPNLADLAVFGVLRPIRYLRS------GRDMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 240 ~~~~~~~~~~~~l~~le~~L~-~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~------~~~~~~~p~L~~w~~r~~~~pg~ 312 (319)
..+...+++.+.|..+|+.|. +++|++|+++++.|+++++++.++..... ...-.++|+|.+|.+||.+++.-
T Consensus 126 ~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V 205 (231)
T KOG0406|consen 126 EQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAV 205 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhH
Confidence 334577889999999999998 78999999999999999977665544321 11234689999999999987754
Q ss_pred c
Q 020964 313 S 313 (319)
Q Consensus 313 ~ 313 (319)
.
T Consensus 206 ~ 206 (231)
T KOG0406|consen 206 K 206 (231)
T ss_pred H
Confidence 3
No 5
>PLN02473 glutathione S-transferase
Probab=99.95 E-value=7.8e-27 Score=204.51 Aligned_cols=196 Identities=16% Similarity=0.195 Sum_probs=141.9
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC----hhh-hhhcCCccccEEEECCeEeechHHHHHHHHhHcCCC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~----~~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 161 (319)
.++||+...||+|++|+++|.++|++|+.+.++... .++ +++||.++||+|+++|..|+||.+|++||+++|++.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 479999999999999999999999999999887542 222 558999999999999999999999999999999753
Q ss_pred C---CCCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhh
Q 020964 162 R---KADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKK 238 (319)
Q Consensus 162 ~---~~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
. .|..+.++++++.|..|+.+.+.......++... +. ...+. ....
T Consensus 82 ~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~-----------------------~~~~ 130 (214)
T PLN02473 82 GTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLV------FK--PRLGE-----------------------PCDV 130 (214)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHH------hc--ccccC-----------------------CCCh
Confidence 2 2223334577888888877655443222111000 00 00000 0000
Q ss_pred cCchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCc-cccccCCcHHHHHHHHHHhhCcc
Q 020964 239 YNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSG-RDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 239 ~~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~-~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
...+....++.+.++.+++.|++++|++||++|+||+++++.+.++...... ..+.++|+|.+|+++|.++|+-.
T Consensus 131 ~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~~ 206 (214)
T PLN02473 131 ALVEELKVKFDKVLDVYENRLATNRYLGGDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWK 206 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhhH
Confidence 1123355678888999999999889999999999999999998876532221 12467999999999999998754
No 6
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.8e-26 Score=197.51 Aligned_cols=189 Identities=20% Similarity=0.291 Sum_probs=143.5
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC---hhh-hhhcCCccccEEEECC-eEeechHHHHHHHHhHcCCC-
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---KKE-IKWSEYKKVPILMVDG-EQLVDSSAIIDQLDQKLTPK- 161 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~---~~~-~~~~~~~~vP~L~~~g-~~l~eS~~I~~yL~~~~~~~- 161 (319)
++||+.+.||||.||+++|.++|++|+.+.++... .++ +.+||.++||+|+++| ..|+||.+|++||+++|++.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~~ 80 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGPP 80 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCCC
Confidence 47999999999999999999999999999999863 223 4599999999999865 48999999999999999987
Q ss_pred CCCCCCC---ChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhh
Q 020964 162 RKADSPS---GDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKK 238 (319)
Q Consensus 162 ~~~~~~~---~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
..|..+. .+.....|..+++..+...+....... .. .... ...
T Consensus 81 l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~------------------------~~~ 126 (211)
T COG0625 81 LLPADPLARRARALLLWWLFFAASDLHPVIGQRRRAL-LG---------SEPE------------------------LLE 126 (211)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhh-cc---------cccc------------------------ccH
Confidence 4454554 344445666666655555443222110 00 0000 011
Q ss_pred cCchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCc
Q 020964 239 YNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 239 ~~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~ 312 (319)
...+...+.+...+..++..|++++|++||++|+||+.+++++.++..... .+.++|+|.+|++||.++|..
T Consensus 127 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~tiAD~~~~~~~~~~~~~~~--~~~~~p~l~~w~~r~~~rp~~ 198 (211)
T COG0625 127 AALEAARAEIRALLALLEALLADGPYLAGDRFTIADIALAPLLWRLALLGE--ELADYPALKAWYERVLARPAF 198 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHhhhcCc--ccccChHHHHHHHHHHcCCch
Confidence 123457788999999999999999999999999999999999998665443 346799999999999999884
No 7
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.94 E-value=6.3e-26 Score=199.06 Aligned_cols=187 Identities=20% Similarity=0.299 Sum_probs=136.0
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh----hh-hhhcCCccccEEEE-----CC--eEeechHHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEYKKVPILMV-----DG--EQLVDSSAIIDQL 154 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~----~~-~~~~~~~~vP~L~~-----~g--~~l~eS~~I~~yL 154 (319)
+++||+.+ +|+|++|+++|+++||+|+.+.++...+ ++ +++||.++||+|++ +| ..|+||.+|++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 37899876 7999999999999999999999986432 23 45899999999997 45 4799999999999
Q ss_pred HhHcCCCCCCCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHH
Q 020964 155 DQKLTPKRKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKK 234 (319)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 234 (319)
+++|+. ..+..+.++++++.|..|.++.+...+.... . +. .....
T Consensus 80 ~~~~~~-l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~-~--------~~--~~~~~----------------------- 124 (215)
T PRK13972 80 AEKTGL-FLSHETRERAATLQWLFWQVGGLGPMLGQNH-H--------FN--HAAPQ----------------------- 124 (215)
T ss_pred HHhcCC-CCCCCHHHHHHHHHHHHHHhhccCcceeeee-e--------ee--ccCCC-----------------------
Confidence 999852 2232344567788888888776554321100 0 00 00000
Q ss_pred HhhhcCchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCc
Q 020964 235 LKKKYNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~ 312 (319)
......+.....+.+.+..+++.|++++||+||++|+||+++++++...... ..++..+|+|.+|+++|.++|.-
T Consensus 125 -~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~--~~~~~~~P~l~~w~~r~~~rp~~ 199 (215)
T PRK13972 125 -TIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAWTRQ--RIDLAMYPAVKNWHERIRSRPAT 199 (215)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhccCccccCCCCCHHHHHHHHHHHHHhhc--CCcchhCHHHHHHHHHHHhCHHH
Confidence 0001122345678888999999999899999999999999998887543322 23466799999999999999875
No 8
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.93 E-value=5.3e-25 Score=192.45 Aligned_cols=197 Identities=21% Similarity=0.341 Sum_probs=140.4
Q ss_pred EEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh-hhhhhcCCccccEEE-ECCeEeechHHHHHHHHhHcCCCCCCCC
Q 020964 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIKWSEYKKVPILM-VDGEQLVDSSAIIDQLDQKLTPKRKADS 166 (319)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~-~~~~~~~~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~~~~~ 166 (319)
+||++..||||+|||++|.++|++|+.+.+..... ..++.||.++||+|+ ++|..++||.+|++||+++|+... +.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~--~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL--LT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcchhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc--CC
Confidence 58999999999999999999999999988765432 246789999999998 799999999999999999997533 23
Q ss_pred CCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhh-------hc
Q 020964 167 PSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKK-------KY 239 (319)
Q Consensus 167 ~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-------~~ 239 (319)
+.++.++++|..+++..+...+.+.+...... .+...+. +.+ +..++... ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~-------~~~~~~~~~g~~~~~~~ 137 (209)
T TIGR02182 79 GKVSPEIEAWLRKVTGYANKLLLPRFAKSDLP------------EFATQSA--RKY-------FTDKKEASAGNFSALLN 137 (209)
T ss_pred CCChHHHHHHHHHHHHHhhhhhccccccCCCc------------ccCCHHH--HHH-------HHHHHHHhcCCHHHHHc
Confidence 34568889999888876655444332110000 0000000 000 00000000 01
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCC-cHHHHHHHHHHhhCcc
Q 020964 240 NITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHT-RIGEWYTRMERVVGES 313 (319)
Q Consensus 240 ~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p-~L~~w~~r~~~~pg~~ 313 (319)
..++..+.+.+.|+.+++.|++++|++| ++|+||+++++++.++..... .++| ||.+|++||+++++..
T Consensus 138 ~~~~~~~~~~~~l~~le~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~~~----~~~p~~l~~w~~Ri~ar~~~~ 207 (209)
T TIGR02182 138 HTPGLLEEINADLEELDKLIDGPNAVNG-ELSEDDILVFPLLRNLTLVAG----INWPSRVADYLDNMSKKSKVP 207 (209)
T ss_pred cCHHHHHHHHHHHHHHHHHHhCccccCC-CCCHHHHHHHHHhcCeeeecC----CCCChHHHHHHHHHHHHhCCC
Confidence 1245677889999999999999999965 699999999999998765331 1366 9999999999998753
No 9
>PRK15113 glutathione S-transferase; Provisional
Probab=99.93 E-value=2.4e-25 Score=195.31 Aligned_cols=189 Identities=18% Similarity=0.186 Sum_probs=138.0
Q ss_pred CcEEEEeeC--CChhHHHHHHHHHHCCCCeEEEEcCCCCh----hh-hhhcCCccccEEEECCeEeechHHHHHHHHhHc
Q 020964 86 KEVVLYQYE--ACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 86 ~~~~Ly~~~--~sp~~~~vr~~L~~~gl~~~~~~~~~~~~----~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 158 (319)
++++||+.+ .||||++|+++|.++||+|+.+.++...+ ++ +++||.++||+|+++|..|+||.+|++||+++|
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 568999976 69999999999999999999999987542 22 458999999999999999999999999999999
Q ss_pred CCCCC-CCCCC---ChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHH
Q 020964 159 TPKRK-ADSPS---GDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKK 234 (319)
Q Consensus 159 ~~~~~-~~~~~---~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 234 (319)
++... ++.|. ++++++.|..|++..+.......... . + .. .
T Consensus 84 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~---~----~---~~-------------------------~ 128 (214)
T PRK15113 84 APPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTD---V----V---FA-------------------------G 128 (214)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccc---h----h---cc-------------------------C
Confidence 85431 13333 45778888888875544321100000 0 0 00 0
Q ss_pred HhhhcCchHHHHHHHHHHHHHHHHhCC-CCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCcc
Q 020964 235 LKKKYNITDERAALYEAAETWVDALNG-REFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~le~~L~~-~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
.......+...+.+.+.+..+++.|++ ++|++|+ +|+||+++++++.++.... .++ .|+|.+|++||.++|.-.
T Consensus 129 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~l~G~-~TlADi~l~~~l~~~~~~~--~~~--~p~l~~~~~r~~~rp~~~ 203 (214)
T PRK15113 129 AKKAPLSEAGKAAAEKLFAVAERLLAPGQPNLFGE-WCIADTDLALMLNRLVLHG--DEV--PERLADYATFQWQRASVQ 203 (214)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHhcCCCEeeCC-ccHHHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHhcCHHHH
Confidence 001112344667788889999999975 5799996 9999999999998765433 222 299999999999998754
Q ss_pred c
Q 020964 314 S 314 (319)
Q Consensus 314 ~ 314 (319)
.
T Consensus 204 ~ 204 (214)
T PRK15113 204 R 204 (214)
T ss_pred H
Confidence 4
No 10
>PLN02395 glutathione S-transferase
Probab=99.93 E-value=4.7e-25 Score=193.28 Aligned_cols=196 Identities=13% Similarity=0.158 Sum_probs=140.6
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC----hhh-hhhcCCccccEEEECCeEeechHHHHHHHHhHcCCC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~----~~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 161 (319)
.++||+...| +++||+++|.++|++|+.+.++... .++ .++||.++||+|+++|..|+||.+|++||+++|+..
T Consensus 2 ~~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 2 VLKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred eEEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 3799996654 6899999999999999999988642 223 458999999999999999999999999999999753
Q ss_pred ---CCCCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhh
Q 020964 162 ---RKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKK 238 (319)
Q Consensus 162 ---~~~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
..|..+.++++++.|..|++..+...+....+... +.... ... ...
T Consensus 81 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~------------------------~~~ 129 (215)
T PLN02395 81 GPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHIL------FASKM-GFP------------------------ADE 129 (215)
T ss_pred CcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHH------hhhhc-cCC------------------------CcH
Confidence 23333445677888888887665544322111000 00000 000 000
Q ss_pred cCchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhc-cCccccccCCcHHHHHHHHHHhhCccc
Q 020964 239 YNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYL-RSGRDMVEHTRIGEWYTRMERVVGESS 314 (319)
Q Consensus 239 ~~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~-~~~~~~~~~p~L~~w~~r~~~~pg~~~ 314 (319)
...+...+.+.+.++.+|+.|++++|++||++|+||+++++++.++... .....+..+|+|.+|+++|.++|+...
T Consensus 130 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~k~ 206 (215)
T PLN02395 130 KVIKESEEKLAKVLDVYEARLSKSKYLAGDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAWKE 206 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHHHH
Confidence 0123356778889999999999889999999999999999988776421 111235678999999999999987543
No 11
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.93 E-value=3e-25 Score=192.44 Aligned_cols=182 Identities=18% Similarity=0.253 Sum_probs=136.1
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh-----hh-hhhcCCccccEEEE-CCeEeechHHHHHHHHhHcCC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-----KE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTP 160 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~-----~~-~~~~~~~~vP~L~~-~g~~l~eS~~I~~yL~~~~~~ 160 (319)
++||+...+ ++++++++|+++||+|+.+.++...+ ++ .++||.++||+|++ +|..|+||.+|++||+++|++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 478998765 79999999999999999999886432 23 45899999999985 889999999999999999986
Q ss_pred CCC--CCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhh
Q 020964 161 KRK--ADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKK 238 (319)
Q Consensus 161 ~~~--~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
..+ +..+.+++.++.|..|+.+.+...+.+.+. ... .+
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~---------------~~~---~~---------------------- 119 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFR---------------PDT---PE---------------------- 119 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccC---------------CCC---hH----------------------
Confidence 542 222334566778888776654433221110 000 00
Q ss_pred cCchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCc
Q 020964 239 YNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 239 ~~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~ 312 (319)
...+...+.+.+.++.+|+.|++++||+||++|+||+++++++.++.... .++..+|+|.+|+++|.++|+.
T Consensus 120 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~ 191 (201)
T PRK10542 120 EYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYLFTVLRWAYAVK--LNLEGLEHIAAYMQRVAERPAV 191 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHHHHHHHHhhccC--CCcccchHHHHHHHHHHcCHHH
Confidence 00123456788889999999999999999999999999999998875433 3456799999999999999864
No 12
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.93 E-value=4.8e-25 Score=192.47 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=135.4
Q ss_pred EEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC-----hhh-hhhcCCccccEEEECCeEeechHHHHHHHHhHcCCCC
Q 020964 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (319)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~-----~~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~ 162 (319)
+||++..||+|++||++|.++||+|+.+.++... .++ .++||.++||+|+++|..|+||.+|++||++++++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999988522 223 3489999999999999999999999999999998644
Q ss_pred C-CCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCc
Q 020964 163 K-ADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNI 241 (319)
Q Consensus 163 ~-~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (319)
+ |..+.+++.+++|..+++..+.......+... +... . + .......
T Consensus 81 l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--~-----------~----------~~~~~~~ 127 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIACDIHPLNNLRVLQY----------LREK--L-----------G----------VEEEARN 127 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHH----------HHhh--c-----------C----------CCHHHHH
Confidence 2 32333457777777776644332211000000 0000 0 0 0000011
Q ss_pred hHHHHHHHHHHHHHHHHhCC--CCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCc
Q 020964 242 TDERAALYEAAETWVDALNG--REFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~--~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~ 312 (319)
+...+.+.+.|..+|+.|++ ++||+|+++|+||+++++++.++.... ..+..+|+|.+|+++|.++|..
T Consensus 128 ~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T~ADi~~~~~l~~~~~~~--~~~~~~p~l~~~~~~~~~rp~~ 198 (210)
T TIGR01262 128 RWYQHWISKGFAALEALLQPHAGAFCVGDTPTLADLCLVPQVYNAERFG--VDLTPYPTLRRIAAALAALPAF 198 (210)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCCHHHHHHHHHHHHHHHcC--CCcccchHHHHHHHHHhcCHHH
Confidence 12345688889999999986 469999999999999999998765332 3466799999999999998764
No 13
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.93 E-value=9.4e-25 Score=189.63 Aligned_cols=191 Identities=16% Similarity=0.204 Sum_probs=137.4
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-h-hhhcCCccccEEE-ECCeEeechHHHHHHHHhHcCCCC-C
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILM-VDGEQLVDSSAIIDQLDQKLTPKR-K 163 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~-~ 163 (319)
++||++..||++++||++|+++|++|+.+.++...+. + .++||.++||+|+ ++|..++||.+|++||++++++.. .
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l~ 80 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAPAML 80 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCCC
Confidence 4799999999999999999999999999998865433 2 3479999999998 588999999999999999986543 2
Q ss_pred CCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCchH
Q 020964 164 ADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITD 243 (319)
Q Consensus 164 ~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (319)
|..+.+++.++.|..|+++.+...+. .+.. .. .... . ......+.
T Consensus 81 p~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~--------~~--~~~~----------------------~--~~~~~~~~ 125 (202)
T PRK10357 81 PRDPLAALRVRQLEALADGIMDAALV-SVRE--------QA--RPAA----------------------Q--QSEDELLR 125 (202)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH--------Hh--Cccc----------------------c--ccHHHHHH
Confidence 22222345667777776654433211 0000 00 0000 0 00011223
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccc-cccCCcHHHHHHHHHHhhCccc
Q 020964 244 ERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRD-MVEHTRIGEWYTRMERVVGESS 314 (319)
Q Consensus 244 ~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~-~~~~p~L~~w~~r~~~~pg~~~ 314 (319)
..+++.+.|+.+|+.|++++ |+||++|+||+++++.+.++........ ..++|+|.+|+++|.++|+...
T Consensus 126 ~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~~~ 196 (202)
T PRK10357 126 QREKINRSLDALEGYLVDGT-LKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESFAR 196 (202)
T ss_pred HHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhhhh
Confidence 56678889999999998888 9999999999999999987755332112 3578999999999999987643
No 14
>PRK11752 putative S-transferase; Provisional
Probab=99.93 E-value=9.1e-25 Score=197.50 Aligned_cols=193 Identities=16% Similarity=0.206 Sum_probs=137.3
Q ss_pred CCCcEEEEeeCCChhHHHHHHHHHHC------CCCeEEEEcCCCCh----hh-hhhcCCccccEEEEC----CeEeechH
Q 020964 84 VPKEVVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPINK----KE-IKWSEYKKVPILMVD----GEQLVDSS 148 (319)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~------gl~~~~~~~~~~~~----~~-~~~~~~~~vP~L~~~----g~~l~eS~ 148 (319)
.+++++||+.. ||+|++|+++|+|+ |++|+.+.++.... ++ +++||.++||+|+++ |..|+||.
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~ 119 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESG 119 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHH
Confidence 35689999965 99999999999997 89999999886432 22 459999999999984 36899999
Q ss_pred HHHHHHHhHcCCCCCCCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHH
Q 020964 149 AIIDQLDQKLTPKRKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAM 228 (319)
Q Consensus 149 ~I~~yL~~~~~~~~~~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 228 (319)
+|++||+++|+. ..|..+.++++++.|+.|++..+ ..+...+.. .+. ...
T Consensus 120 AIl~YL~~~~~~-L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~-------~~~-~~~-------------------- 169 (264)
T PRK11752 120 AILLYLAEKFGA-FLPKDLAARTETLNWLFWQQGSA-PFLGGGFGH-------FYA-YAP-------------------- 169 (264)
T ss_pred HHHHHHHHhcCC-cCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHH-------HHH-hCC--------------------
Confidence 999999999973 32333344677888888776542 111100000 000 000
Q ss_pred HHHHHHHhhhcCchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhcc-----CccccccCCcHHHHH
Q 020964 229 YFVSKKLKKKYNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLR-----SGRDMVEHTRIGEWY 303 (319)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~-----~~~~~~~~p~L~~w~ 303 (319)
.......+...+++.+.|+.++++|++++||+||++|+|||++++++.++.... ...++.++|+|.+|+
T Consensus 170 ------~~~~~~~~~~~~~~~~~L~~le~~L~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~ 243 (264)
T PRK11752 170 ------EKIEYAINRFTMEAKRQLDVLDKQLAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWA 243 (264)
T ss_pred ------ccchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHH
Confidence 000112233556778899999999998999999999999999999887664311 112356799999999
Q ss_pred HHHHHhhCcc
Q 020964 304 TRMERVVGES 313 (319)
Q Consensus 304 ~r~~~~pg~~ 313 (319)
++|.++|.-.
T Consensus 244 ~rv~~rPs~k 253 (264)
T PRK11752 244 KEIAERPAVK 253 (264)
T ss_pred HHHHhCHHHH
Confidence 9999998654
No 15
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.92 E-value=1.2e-23 Score=185.89 Aligned_cols=174 Identities=21% Similarity=0.257 Sum_probs=124.3
Q ss_pred eCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-h-hhhcCCccccEEEECCeEeechHHHHHHHHhHcCCCCCC-CCCCC
Q 020964 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKA-DSPSG 169 (319)
Q Consensus 93 ~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~-~~~~~ 169 (319)
...||||++|+++|.++||+|+++.++...++ + +++||.++||+|+++|..|+||.+|++||+++|++...| +.+.+
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~ 95 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKH 95 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 35699999999999999999999999987654 3 559999999999999999999999999999999754322 33332
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCchHHHHHHH
Q 020964 170 DDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALY 249 (319)
Q Consensus 170 ~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (319)
.. .+... .+ +...+... ... ......+...+.+.
T Consensus 96 ~~-~~~~~--~~--l~~~~~~~---------------~~~--------------------------~~~~~~~~~~~~l~ 129 (236)
T TIGR00862 96 PE-SNTAG--LD--IFAKFSAY---------------IKN--------------------------SNPEANDNLEKGLL 129 (236)
T ss_pred HH-HHHHH--HH--HHHHHHHH---------------HHc--------------------------CCHHHHHHHHHHHH
Confidence 22 11110 00 11100000 000 00001122445678
Q ss_pred HHHHHHHHHhC------------------CCCccCCCCCChhhHHhhhhhhhhhhcc---Cccc-cccCCcHHHHHHHHH
Q 020964 250 EAAETWVDALN------------------GREFLGGSKPNLADLAVFGVLRPIRYLR---SGRD-MVEHTRIGEWYTRME 307 (319)
Q Consensus 250 ~~l~~le~~L~------------------~~~fL~Gd~~T~ADi~l~~~L~~l~~~~---~~~~-~~~~p~L~~w~~r~~ 307 (319)
+.+..+++.|. +++||.||++|+|||++++++.++.... .+.+ ..++|+|.+|+++|.
T Consensus 130 ~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~ 209 (236)
T TIGR00862 130 KALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAY 209 (236)
T ss_pred HHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHh
Confidence 88888888876 5799999999999999999999888531 1234 467999999999999
Q ss_pred HhhCc
Q 020964 308 RVVGE 312 (319)
Q Consensus 308 ~~pg~ 312 (319)
+++..
T Consensus 210 ~~~sf 214 (236)
T TIGR00862 210 AREEF 214 (236)
T ss_pred ccchH
Confidence 88764
No 16
>PLN02378 glutathione S-transferase DHAR1
Probab=99.91 E-value=8.7e-24 Score=185.31 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=121.7
Q ss_pred eeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhh--hhhcCCccccEEEECCeEeechHHHHHHHHhHcCCCCCCCCCCC
Q 020964 92 QYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSG 169 (319)
Q Consensus 92 ~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~--~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~~~~~~ 169 (319)
.+..||||+||+++|+++|++|+.+.++...+++ +++||.|+||+|+++|..|+||.+|++||+++|++..+ . +
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~--~ 91 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--K--T 91 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--C--C
Confidence 3456999999999999999999999999766553 55999999999999999999999999999999975432 1 1
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCchHHHHHHH
Q 020964 170 DDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALY 249 (319)
Q Consensus 170 ~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (319)
..+... ++..+...+... +. .....+...+.+.
T Consensus 92 ~~~~a~----i~~~~~~~~~~~-~~------------------------------------------~~~~~~~~~~~~~ 124 (213)
T PLN02378 92 PAEFAS----VGSNIFGTFGTF-LK------------------------------------------SKDSNDGSEHALL 124 (213)
T ss_pred HHHHHH----HHHHHHHHHHHH-Hh------------------------------------------cCChhhHHHHHHH
Confidence 111111 111111110000 00 0000112345677
Q ss_pred HHHHHHHHHhC--CCCccCCCCCChhhHHhhhhhhhhhhccC---cc-ccccCCcHHHHHHHHHHhhCcc
Q 020964 250 EAAETWVDALN--GREFLGGSKPNLADLAVFGVLRPIRYLRS---GR-DMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 250 ~~l~~le~~L~--~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~---~~-~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
+.|..+++.|+ +++|++||++|+||+++++++.++..... .. ...++|+|.+|+++|.++|+-.
T Consensus 125 ~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~~ 194 (213)
T PLN02378 125 VELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFE 194 (213)
T ss_pred HHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCee
Confidence 78999999997 57999999999999999999877543211 11 2356899999999999999754
No 17
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.91 E-value=1.8e-23 Score=182.25 Aligned_cols=182 Identities=16% Similarity=0.214 Sum_probs=126.5
Q ss_pred CcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-----hh---hhcCCccccEEEECCeEeechHHHHHHHHhH
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-----EI---KWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-----~~---~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 157 (319)
++++||+++.++.+++||++|+++|++|+.+.++..... ++ +.+|.++||+|+++|..|+||.+|++||+++
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~ 82 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKK 82 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHH
Confidence 459999999999999999999999999999977532111 11 3689999999999999999999999999999
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhh
Q 020964 158 LTPKRKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKK 237 (319)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 237 (319)
|+.. +. ....+.+..++...+..... .+.. .. ... .
T Consensus 83 ~~~~-----~~-~~~~~~~~~~~~~~~~~~~~-~~~~--------~~---------~~~----------------~---- 118 (205)
T PTZ00057 83 YKIC-----GE-SELNEFYADMIFCGVQDIHY-KFNN--------TN---------LFK----------------Q---- 118 (205)
T ss_pred cCCC-----CC-CHHHHHHHHHHHHHHHHHHH-HHhh--------hH---------HHH----------------H----
Confidence 9632 11 12222222222221111100 0000 00 000 0
Q ss_pred hcCchHHHHHHHHHHHHHHHHhCCC--CccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCcc
Q 020964 238 KYNITDERAALYEAAETWVDALNGR--EFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 238 ~~~~~~~~~~~~~~l~~le~~L~~~--~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
...+...+.+.+.+..+|+.|+++ +||+||++|+||+++++++.++... .+.++..+|+|.+|++||+++|+..
T Consensus 119 -~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~~~~~~~-~~~~l~~~P~l~~~~~r~~~~P~~k 194 (205)
T PTZ00057 119 -NETTFLNEELPKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLYDDIETK-YPNSLKNFPLLKAHNEFISNLPNIK 194 (205)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHHHHHHHh-ChhhhccChhHHHHHHHHHhChHHH
Confidence 001224467788888899988643 8999999999999999998876531 2245678999999999999998754
No 18
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=171.12 Aligned_cols=189 Identities=18% Similarity=0.237 Sum_probs=143.3
Q ss_pred CCcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-----hh-hhcCCccccEEEECCeEeechHHHHHHHHhHc
Q 020964 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-----EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-----~~-~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 158 (319)
.++.+||+|+.|.++.|||++|..+||+|+++.++....+ ++ +.||.++||.|++||..++||.+|++||+++|
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 3578999999999999999999999999999999975543 23 38999999999999999999999999999999
Q ss_pred CCCCC-CCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhh
Q 020964 159 TPKRK-ADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKK 237 (319)
Q Consensus 159 ~~~~~-~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 237 (319)
|+..+ |-.+..++..+++...+...+.+.-+-.++..+.+ + +.
T Consensus 83 P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~e----------------------k--------------~~ 126 (217)
T KOG0868|consen 83 PDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNE----------------------K--------------EP 126 (217)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcc----------------------c--------------cc
Confidence 97652 44444578888888888876666433222211100 0 00
Q ss_pred hcCchHHHHHHHHHHHHHHHHhC--CCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhC
Q 020964 238 KYNITDERAALYEAAETWVDALN--GREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVG 311 (319)
Q Consensus 238 ~~~~~~~~~~~~~~l~~le~~L~--~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg 311 (319)
.+...-+...+.+.|..||..|. .++|.+||+.|+||+++.+.+..... ...++..||-+.+-.+.+.+.|.
T Consensus 127 ~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevtiADl~L~pqv~nA~r--f~vdl~PYPti~ri~e~l~elpa 200 (217)
T KOG0868|consen 127 GYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVTIADLCLPPQVYNANR--FHVDLTPYPTITRINEELAELPA 200 (217)
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHccCCcccCceeehhhhccchhhhhhhh--ccccCCcCchHHHHHHHHHhCHH
Confidence 01112244566677888888776 47899999999999999999987643 33578889999999988887664
No 19
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-22 Score=176.21 Aligned_cols=219 Identities=25% Similarity=0.372 Sum_probs=155.5
Q ss_pred CCCCCcEEEEeeCC-------ChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechHHHHHHH
Q 020964 82 DLVPKEVVLYQYEA-------CPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQL 154 (319)
Q Consensus 82 ~~~~~~~~Ly~~~~-------sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~~I~~yL 154 (319)
+...+.+.||+|+. ||||.|+..+|+..+|||+++++.... .+..|++|+++.||+++.||..|+.+|
T Consensus 40 d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~~-----rSr~G~lPFIELNGe~iaDS~~I~~~L 114 (281)
T KOG4244|consen 40 DYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLKR-----RSRNGTLPFIELNGEHIADSDLIEDRL 114 (281)
T ss_pred ccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccccee-----eccCCCcceEEeCCeeccccHHHHHHH
Confidence 34456788999974 899999999999999999999988622 378999999999999999999999999
Q ss_pred HhHcCCCCCCCCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhh-hhhhhhhccC--CCChhHHHH-HHhhhhHHHHH
Q 020964 155 DQKLTPKRKADSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEAL-ESFDYITSSG--NFSFTEKLT-AKYAGAAAMYF 230 (319)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~e~~~-~~~~~~~~~~~ 230 (319)
.+.++-+.. +.+.+++..++..+++|+|+..++.+. +..++.+ .....+.... -+++.-..+ +..++....+.
T Consensus 115 ~~hf~~~~~-L~~e~~a~s~Al~rm~dnhL~~~l~y~--k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r 191 (281)
T KOG4244|consen 115 RKHFKIPDD-LSAEQRAQSRALSRMADNHLFWILLYY--KGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKR 191 (281)
T ss_pred HHHcCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHh--hhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHH
Confidence 998874332 566678999999999999999886643 2222211 1111111111 112222222 33333221111
Q ss_pred HHHHHhhhcCchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCc---ccc--ccCCcHHHHHHH
Q 020964 231 VSKKLKKKYNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSG---RDM--VEHTRIGEWYTR 305 (319)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~---~~~--~~~p~L~~w~~r 305 (319)
.... ......++..+-+.+.|+.+++.|++++||+||++|-+|+.+|+.|..+.| +.. .++ .++|||.+||+|
T Consensus 192 ~~g~-IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~Y-P~~~~i~d~le~d~p~l~eYceR 269 (281)
T KOG4244|consen 192 STGA-IGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYY-PFRSHISDLLEGDFPNLLEYCER 269 (281)
T ss_pred hhcc-ccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheec-cCCCcHHHHHhhhchHHHHHHHH
Confidence 1110 111233467788888899999999999999999999999999999999888 321 222 358999999999
Q ss_pred HHHhh
Q 020964 306 MERVV 310 (319)
Q Consensus 306 ~~~~p 310 (319)
|.+..
T Consensus 270 Ir~~~ 274 (281)
T KOG4244|consen 270 IRKEI 274 (281)
T ss_pred HHHHh
Confidence 99763
No 20
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.89 E-value=2.4e-22 Score=181.20 Aligned_cols=170 Identities=21% Similarity=0.265 Sum_probs=120.9
Q ss_pred eCCChhHHHHHHHHHHCCCCeEEEEcCCCChhh--hhhcCCccccEEEECCeEeechHHHHHHHHhHcCCCCCCCCCCCh
Q 020964 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSGD 170 (319)
Q Consensus 93 ~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~--~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~~~~~~~ 170 (319)
...||||++|+++|+++||+|+.+.++..++++ +++||.++||+|+++|..|+||.+|++||+++|++..+ ..+.++
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L-~~~~er 148 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPL-ATPPEK 148 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCC-CCHHHH
Confidence 344999999999999999999999998765443 55999999999999999999999999999999986432 112122
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCchHHHHHHHH
Q 020964 171 DEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALYE 250 (319)
Q Consensus 171 ~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (319)
+.+. .++.. .+... +. .....+...+++.+
T Consensus 149 a~i~---~~l~~----~~~~~-~~------------------------------------------~~~~~~~~~~~l~~ 178 (265)
T PLN02817 149 ASVG---SKIFS----TFIGF-LK------------------------------------------SKDPGDGTEQALLD 178 (265)
T ss_pred HHHH---HHHHH----HHHHH-hc------------------------------------------cCCcchHHHHHHHH
Confidence 2222 11111 10000 00 00000112345667
Q ss_pred HHHHHHHHhCC-CCccCCCCCChhhHHhhhhhhhhhhccC---ccc-cccCCcHHHHHHHHHHhhCcc
Q 020964 251 AAETWVDALNG-REFLGGSKPNLADLAVFGVLRPIRYLRS---GRD-MVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 251 ~l~~le~~L~~-~~fL~Gd~~T~ADi~l~~~L~~l~~~~~---~~~-~~~~p~L~~w~~r~~~~pg~~ 313 (319)
.+..+|+.|++ ++||+||++|+||+++++++.++..... ..+ ..++|+|.+|+++|.++|...
T Consensus 179 ~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~~ 246 (265)
T PLN02817 179 ELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESFV 246 (265)
T ss_pred HHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhHh
Confidence 78899999874 6999999999999999999987654211 112 256899999999999988764
No 21
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=99.89 E-value=2.6e-22 Score=163.08 Aligned_cols=143 Identities=62% Similarity=0.988 Sum_probs=131.9
Q ss_pred ChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCc-hHHHHH
Q 020964 169 GDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNI-TDERAA 247 (319)
Q Consensus 169 ~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 247 (319)
.+.++..|..|+|+++.+++.|++|++..++++.|+|++..++|+..++...++.|+..||.+++++++++.+ ++.++.
T Consensus 4 ~~~~e~kWr~W~d~~lv~~~~pniyrt~~ea~~~f~yi~~~~~f~~~er~~~~~~Ga~aM~~isk~lkk~~~i~~D~r~~ 83 (149)
T cd03197 4 ADPEEMKWRKWADDHLVHLISPNIYRTWSEALASFDYITPSGYFGYWEKFFAKYVGAAAMYLISKYLKKPRLLQDDVREW 83 (149)
T ss_pred chHHHHHHHHHHHhhhHhhccHHHhCCHHHHHHhhhhHhcCCCccHHHHHHHHHhhHHHHHHHHHHhccccCCCchHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999998 679999
Q ss_pred HHHHHHHHHHHhCC-CCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhC
Q 020964 248 LYEAAETWVDALNG-REFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVG 311 (319)
Q Consensus 248 ~~~~l~~le~~L~~-~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg 311 (319)
+.++++.+.+.+++ ++|++||+||+||+++++++..+.......++.++|+|.+|++||++..|
T Consensus 84 L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~~v~ 148 (149)
T cd03197 84 LYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDAAVQ 148 (149)
T ss_pred HHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHHHhc
Confidence 99999999997764 58999999999999999999988766543378899999999999998876
No 22
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.5e-21 Score=171.02 Aligned_cols=188 Identities=20% Similarity=0.284 Sum_probs=145.2
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh----h-hhhcCCccccEEEECCeEeechHHHHHHHHhHcCCC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK----E-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPK 161 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~----~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 161 (319)
.++||+...+|.|++|.+++.++|++|+++.++...+. + +++||.++||+|+|+|..++||.+|+.||.++|. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~-~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYG-P 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcC-C
Confidence 47899999999999999999999999999988754332 2 5689999999999999999999999999999997 4
Q ss_pred CCC-CCCCC---hHHHHHHHHHHHhhhhhhh--hhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHH
Q 020964 162 RKA-DSPSG---DDEEKKWRGWVDNHLVHLL--SPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKL 235 (319)
Q Consensus 162 ~~~-~~~~~---~~~~~~~~~~id~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 235 (319)
... +.|.+ ++.+.+|+.|..+.+.... ...+.... .. .+
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~----------~~-~~------------------------ 125 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLL----------VG-LP------------------------ 125 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecce----------ec-cc------------------------
Confidence 332 34433 5777888877777766652 11111100 00 00
Q ss_pred hhhcCchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhh--hccCccccccCCcHHHHHHHHHHhhC
Q 020964 236 KKKYNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIR--YLRSGRDMVEHTRIGEWYTRMERVVG 311 (319)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~--~~~~~~~~~~~p~L~~w~~r~~~~pg 311 (319)
......++...++...++.+|+.|.++.|+.|+++|+||+.+.+.+..+. .. ......++|++.+|++++.++|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~tlADl~~~~~~~~~~~~~~-~~~~~~~~p~v~~W~~~~~~~P~ 202 (226)
T KOG0867|consen 126 LNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQLTLADLSLASTLSQFQGKFA-TEKDFEKYPKVARWYERIQKRPA 202 (226)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcccHHHHHHhhHHHHHhHhhh-hhhhhhhChHHHHHHHHHHhCcc
Confidence 01123356788999999999999999999999999999999999999873 22 23456689999999999999876
No 23
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.6e-19 Score=154.06 Aligned_cols=188 Identities=18% Similarity=0.250 Sum_probs=142.7
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC-hhhhh-hcCCccccEEEECCeEeechHHHHHHHHhHcCCCCCC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN-KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKA 164 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~-~~~~~-~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~ 164 (319)
.++|++|...+++..+|++|...|++|+.+.+...+ +..++ ..|.+++|+|.+||..|.+|.+|++||+++|+
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g----- 77 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG----- 77 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC-----
Confidence 589999999999999999999999999999999877 66666 46999999999999999999999999999998
Q ss_pred CCCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCch-H
Q 020964 165 DSPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNIT-D 243 (319)
Q Consensus 165 ~~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 243 (319)
+.+...+..+|++.+.+.+.......+-.. +.... .......++ .
T Consensus 78 -l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~---------~~~~~------------------------~g~~~~~~~~~ 123 (206)
T KOG1695|consen 78 -LAGKTEEEEAWVDMIVDQFKDFRWEIFRQP---------YTAPE------------------------AGKSEEELDKL 123 (206)
T ss_pred -cCCCCHHHHHHHHHHHHhhhhHHHHHHHHh---------hhhhh------------------------hccchhhhhhh
Confidence 555677788888888877666533211000 00000 000011111 3
Q ss_pred HHHHHHHHHHHHHHHhC--CCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCcc
Q 020964 244 ERAALYEAAETWVDALN--GREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 244 ~~~~~~~~l~~le~~L~--~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
........+..+++.|+ ++.||+||++|+||+.++..+..+...-.......+|+|.++.+||.++|...
T Consensus 124 ~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~ik 195 (206)
T KOG1695|consen 124 YLPAKPKYFKILEKILKKNKSGFLVGDKLTWADLVIAEHLDTLEELLDPSALDHFPKLKAFKERVSSIPNIK 195 (206)
T ss_pred hccchHHHHHHHHHHHHhCCCCeeecCcccHHHHHHHHHHHHHHHhcCchhhccChHHHHHHHHHhcCchHH
Confidence 45566677778888877 55799999999999999999998887422233556799999999999988643
No 24
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.76 E-value=5.9e-18 Score=146.07 Aligned_cols=227 Identities=18% Similarity=0.227 Sum_probs=139.5
Q ss_pred CCCcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhh-----hhhcCCccccEEEECCeEeechHHHHHHHHhHc
Q 020964 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE-----IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~-----~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 158 (319)
....++||+.+.|--+||||+++.|+||+|+...|++..... +.+||.+.||+|+++..+|.|+..||+|+++++
T Consensus 23 ~~e~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf 102 (325)
T KOG4420|consen 23 PRESLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTF 102 (325)
T ss_pred chhcceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhh
Confidence 344599999999999999999999999999999999765443 558999999999999999999999999999998
Q ss_pred CCCCCCCCCCC----hHHHHHHHHHHHhhh------hhhhhhhHhhcchhhhhhhhhhhcc-CCCChhHHHHHHh----h
Q 020964 159 TPKRKADSPSG----DDEEKKWRGWVDNHL------VHLLSPNIYRNTSEALESFDYITSS-GNFSFTEKLTAKY----A 223 (319)
Q Consensus 159 ~~~~~~~~~~~----~~~~~~~~~~id~~l------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~----~ 223 (319)
-+... +-|.. -++........+..- ...+.+.+.. ....+.+..+-.. .+ +.++..+.. .
T Consensus 103 ~ger~-l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~--~s~iP~~~~iR~~~~k--~~~~v~~l~~~e~p 177 (325)
T KOG4420|consen 103 TGERV-LMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTT--DSMIPKYAEIRRHLAK--ATTDVMKLDHEEEP 177 (325)
T ss_pred ccccc-ccccccccccHHHHHHHHHHHhcCcchhhccccccchhhc--cccCcccHHHHHHHHH--HHHHHHHHHhhcCc
Confidence 76542 12211 122222222222110 0111111100 0000111000000 00 000000000 0
Q ss_pred hhHHHHH-HHHHHhhh-------cCchHHHHHHHHHHHHHHHHhCC----CCccCCCCCChhhHHhhhhhhhhhhccCcc
Q 020964 224 GAAAMYF-VSKKLKKK-------YNITDERAALYEAAETWVDALNG----REFLGGSKPNLADLAVFGVLRPIRYLRSGR 291 (319)
Q Consensus 224 ~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~l~~le~~L~~----~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~ 291 (319)
.....|. .++++..+ .....+...+...|+..|..|.+ ..||+|+.+|+||+++.+.|+++..++...
T Consensus 178 dla~ay~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~ 257 (325)
T KOG4420|consen 178 DLAEAYLAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEK 257 (325)
T ss_pred hhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHH
Confidence 0000010 01111111 12345666777777777777876 589999999999999999999999877432
Q ss_pred -ccc--cCCcHHHHHHHHHHhhCcccc
Q 020964 292 -DMV--EHTRIGEWYTRMERVVGESSR 315 (319)
Q Consensus 292 -~~~--~~p~L~~w~~r~~~~pg~~~~ 315 (319)
.|. .-|||.+|++|+.+|+.....
T Consensus 258 ~yw~~gsrpnle~Yf~rvrrR~sf~kv 284 (325)
T KOG4420|consen 258 KYWEDGSRPNLESYFERVRRRFSFRKV 284 (325)
T ss_pred HhcccCCCccHHHHHHHHHhhhHHHHh
Confidence 243 469999999999999876543
No 25
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.3e-16 Score=130.48 Aligned_cols=197 Identities=21% Similarity=0.341 Sum_probs=141.6
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-hhhhcCCccccEEEE-CCeEeechHHHHHHHHhHcCCCCCCC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTPKRKAD 165 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~~~~~~~~~vP~L~~-~g~~l~eS~~I~~yL~~~~~~~~~~~ 165 (319)
++||-|+.||||.|+|+.+-.+|||++.+.+...+.. ...+-|..+||+|+- +|..+.||.+|++|+++.++...+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l-- 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKPLL-- 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcccccceEEccccccchhhhHHHHHHHHhcCchhh--
Confidence 4799999999999999999999999999887654433 466789999999995 999999999999999999885432
Q ss_pred CCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcC-----
Q 020964 166 SPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYN----- 240 (319)
Q Consensus 166 ~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~----- 240 (319)
...-+.++++|++-+.......+.|++-+.. +++|. . ..+.-|+.-|+......
T Consensus 79 t~~~~pai~~wlrkv~~y~nkll~PR~~k~~---l~EF~---------T---------~sA~~yf~~KKe~s~g~F~~~l 137 (215)
T COG2999 79 TGKVRPAIEAWLRKVNGYLNKLLLPRFAKSA---LPEFA---------T---------PSARKYFTDKKEASEGSFESLL 137 (215)
T ss_pred ccCcCHHHHHHHHHhcchHhhhhhhhHhhcC---Ccccc---------C---------HHHHHHHHhhhhhccccHHHHH
Confidence 3334688899999999888888887765422 11211 0 00111222222222222
Q ss_pred --chHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhC
Q 020964 241 --ITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVG 311 (319)
Q Consensus 241 --~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg 311 (319)
-....+++...++.++..+.+..=+-| ..++-|+.+|+.|+.+.... .+.-..++..|..+|.+..+
T Consensus 138 ~~t~~~~~~i~~dl~~l~~Li~~~s~~n~-~l~~ddi~vFplLRnlt~v~---gi~wps~v~dy~~~msektq 206 (215)
T COG2999 138 NHTAQYLKRIQADLRALDKLIVGPSAVNG-ELSEDDILVFPLLRNLTLVA---GIQWPSRVADYRDNMSEKTQ 206 (215)
T ss_pred hchHHHHHHHHHHHHHHHHHhcCcchhcc-ccchhhhhhhHHhccceecc---cCCCcHHHHHHHHHHHHhhC
Confidence 224667888888888887766553444 69999999999999766544 23334589999999987644
No 26
>PLN02907 glutamate-tRNA ligase
Probab=99.70 E-value=2e-16 Score=159.42 Aligned_cols=154 Identities=16% Similarity=0.213 Sum_probs=115.9
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEE-CCeEeechHHHHHHHHhHcCCCCC-CC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTPKRK-AD 165 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~g~~l~eS~~I~~yL~~~~~~~~~-~~ 165 (319)
++||+.+.++ +.++.++|+++|++|+.++. +|.++||+|++ +|..++||.+|++||++.|+...+ +.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~~----------~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~L~p~ 71 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVPLTIDPS----------LKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQ 71 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCCcEEeec----------CCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCcCCCCC
Confidence 6899888764 55799999999999999762 57999999995 889999999999999999975442 22
Q ss_pred CCCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCchHHH
Q 020964 166 SPSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDER 245 (319)
Q Consensus 166 ~~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (319)
.+.+++++..|+.|.+... . .
T Consensus 72 d~~erAqV~qWL~~~~~~~-~----------------------------------------------------------~ 92 (722)
T PLN02907 72 DAFESSQVDEWLDYAPTFS-S----------------------------------------------------------G 92 (722)
T ss_pred CHHHHHHHHHHHHHHhhcc-c----------------------------------------------------------H
Confidence 2223456666666654210 0 0
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhh-hccCccccccCCcHHHHHHHHHHhhC
Q 020964 246 AALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIR-YLRSGRDMVEHTRIGEWYTRMERVVG 311 (319)
Q Consensus 246 ~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~-~~~~~~~~~~~p~L~~w~~r~~~~pg 311 (319)
..+...++.++++|++++||+|+++|+||+++++.+..+. ..........+|+|.+|+++|.++|.
T Consensus 93 ~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 93 SEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCC
Confidence 0234567889999999999999999999999999886541 11111124578999999999999998
No 27
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.1e-16 Score=137.87 Aligned_cols=190 Identities=18% Similarity=0.302 Sum_probs=135.4
Q ss_pred CCCcEEEEeeCCChhHHHHHHHHHHCCCCeEE-E-EcCC--CChh------------h-------h---------hhcCC
Q 020964 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKV-V-EVNP--INKK------------E-------I---------KWSEY 131 (319)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~-~-~~~~--~~~~------------~-------~---------~~~~~ 131 (319)
..+...||..-.|||+.|..++-..||+.-.+ + -+.+ .+++ + + ..+++
T Consensus 48 e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgR 127 (324)
T COG0435 48 EKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGR 127 (324)
T ss_pred CCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCc
Confidence 46889999999999999999999999877322 1 1111 0000 0 1 13578
Q ss_pred ccccEEEE--CCeEe-echHHHHHHHHhHcCC---CCCCCCCCC-hHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhh
Q 020964 132 KKVPILMV--DGEQL-VDSSAIIDQLDQKLTP---KRKADSPSG-DDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFD 204 (319)
Q Consensus 132 ~~vP~L~~--~g~~l-~eS~~I~~yL~~~~~~---~~~~~~~~~-~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~ 204 (319)
.+||+|.| ..+.+ .||.+|++.++..+.+ ....+.|.+ +.++..+..| +++.++.-+|+....
T Consensus 128 vTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~----Iy~~vNNGVYk~GFA------ 197 (324)
T COG0435 128 VTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKW----IYDTVNNGVYKAGFA------ 197 (324)
T ss_pred eeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhh----hcccccCceeeeccc------
Confidence 99999999 34444 6999999999876543 222333432 3444444444 445555555654322
Q ss_pred hhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhh
Q 020964 205 YITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPI 284 (319)
Q Consensus 205 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l 284 (319)
..+...+++...+.+.|+.+|+.|+++.||+||++|.||+-+|+.|.++
T Consensus 198 -------------------------------~tq~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRF 246 (324)
T COG0435 198 -------------------------------TTQEAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRF 246 (324)
T ss_pred -------------------------------chHHHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEee
Confidence 2233557788999999999999999999999999999999999999988
Q ss_pred hhccCc------cccccCCcHHHHHHHHHHhhCccc
Q 020964 285 RYLRSG------RDMVEHTRIGEWYTRMERVVGESS 314 (319)
Q Consensus 285 ~~~~~~------~~~~~~p~L~~w~~r~~~~pg~~~ 314 (319)
..+..+ ..+.+||||..|...+.+.||.+.
T Consensus 247 D~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~ 282 (324)
T COG0435 247 DPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAE 282 (324)
T ss_pred cceEEeeeecccchhhcCchHHHHHHHHhcCccccc
Confidence 765431 235679999999999999998764
No 28
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.69 E-value=9.6e-17 Score=117.12 Aligned_cols=71 Identities=41% Similarity=0.716 Sum_probs=65.5
Q ss_pred EEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-h-hhhcCCccccEEEECCeEeechHHHHHHHHhHcCC
Q 020964 90 LYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTP 160 (319)
Q Consensus 90 Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~ 160 (319)
||+++.||||+|+|++|+++||+|+.+.++...+. + .+.+|.++||+|+++|..++||.+|++||+++|++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCC
Confidence 89999999999999999999999999999876643 3 45899999999999999999999999999999985
No 29
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.67 E-value=3.5e-16 Score=114.60 Aligned_cols=73 Identities=67% Similarity=1.183 Sum_probs=66.2
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEEC----CeEeechHHHHHHHHhHcC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVD----GEQLVDSSAIIDQLDQKLT 159 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~----g~~l~eS~~I~~yL~~~~~ 159 (319)
+++||+++.||||+++|.+|.++|++|+.+++++....+++.+|.++||+|+++ |..++||.+|++||+++.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~~ 77 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTYLG 77 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHHHHHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHHcC
Confidence 489999999999999999999999999999998766666778999999999975 7899999999999998753
No 30
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=3.7e-16 Score=114.64 Aligned_cols=72 Identities=22% Similarity=0.413 Sum_probs=63.2
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC--hhh-hhhcCCccccEEEE--CCeEeechHHHHHHHHhHc
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKE-IKWSEYKKVPILMV--DGEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~--~~~-~~~~~~~~vP~L~~--~g~~l~eS~~I~~yL~~~~ 158 (319)
+++||+++.||||+||+++|.++||+|+.++++... ..+ .+.+|.++||+|++ +|..++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 479999999999999999999999999999997643 223 45889999999998 4689999999999999875
No 31
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.65 E-value=5e-15 Score=124.74 Aligned_cols=173 Identities=24% Similarity=0.321 Sum_probs=125.2
Q ss_pred CChhHHHHHHHHHHCCCCeEEEEcCCCChhh-h-hhcCCccccEEEECCeEeechHHHHHHHHhHcCCCCCCCCCCChHH
Q 020964 95 ACPFCNKVKAFLDYYDIPYKVVEVNPINKKE-I-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSGDDE 172 (319)
Q Consensus 95 ~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~-~-~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~~~~~~~~~ 172 (319)
.|||||++-+.|.++|++|.+..|+...+++ + .++|.+++|+|..||..++||..|.++|+++|+++.++... ..+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~--~~E 97 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLA--PPE 97 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccC--CHH
Confidence 4999999999999999999999999877664 4 48899999999999999999999999999999977654321 111
Q ss_pred HHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCchHHHHHHHHHH
Q 020964 173 EKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALYEAA 252 (319)
Q Consensus 173 ~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (319)
....-.-+...+... +.. .+.+..+.....+...|
T Consensus 98 ~asag~diF~kF~~f----i~k-----------------------------------------sk~~~n~~~e~~Ll~~L 132 (221)
T KOG1422|consen 98 SASAGSDIFAKFSAF----IKK-----------------------------------------SKDAANDGLEKALLKEL 132 (221)
T ss_pred HHhhHHHHHHHHHHH----HhC-----------------------------------------chhhccchHHHHHHHHH
Confidence 111111111000000 000 11122334556788888
Q ss_pred HHHHHHhCC---CCccCCCCCChhhHHhhhhhhhhhhccCc-cc--cc-cCCcHHHHHHHHHHhhCccc
Q 020964 253 ETWVDALNG---REFLGGSKPNLADLAVFGVLRPIRYLRSG-RD--MV-EHTRIGEWYTRMERVVGESS 314 (319)
Q Consensus 253 ~~le~~L~~---~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~-~~--~~-~~p~L~~w~~r~~~~pg~~~ 314 (319)
++|+++|+. ++||.||++|.|||.+.+-|+-++..... .+ +. +.+.|.+|.+.+.++.....
T Consensus 133 ~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F~~ 201 (221)
T KOG1422|consen 133 EKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEFTN 201 (221)
T ss_pred HHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHhhc
Confidence 999999985 79999999999999999999988876532 22 32 45889999999988765443
No 32
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.1e-14 Score=120.27 Aligned_cols=200 Identities=18% Similarity=0.237 Sum_probs=141.8
Q ss_pred ChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechHHHHHHHHhHcCCCCCCCCCCChHHHHH
Q 020964 96 CPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRKADSPSGDDEEKK 175 (319)
Q Consensus 96 sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~~~~~~~~~~~~~ 175 (319)
..-|..|..+|+..++||.++..+..+ -++|.|+||.|..+.+.+.|-..|+++.+.+-......+...+++..++
T Consensus 34 ~ascLAVqtfLrMcnLPf~v~~~~Nae----fmSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~qkadmra 109 (257)
T KOG3027|consen 34 NASCLAVQTFLRMCNLPFNVRQRANAE----FMSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSEDQKADMRA 109 (257)
T ss_pred chhHHHHHHHHHHcCCCceeeecCCcc----ccCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 346889999999999999999876322 2579999999999988999999999999998654333344555789999
Q ss_pred HHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccC-----CC--ChhHHHHHHhhhhHHHHHHHHHHhh----hcCchHH
Q 020964 176 WRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSG-----NF--SFTEKLTAKYAGAAAMYFVSKKLKK----KYNITDE 244 (319)
Q Consensus 176 ~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 244 (319)
.++++++.+..+-....|..-. .|.-.+..+ +| +..-...++ +...+.++. ...+++.
T Consensus 110 ~vslVen~~t~aEl~~s~~de~----ty~~vT~~R~gs~ypWPLs~i~~f~Kr-------r~~~r~lk~~~W~~~~~DqV 178 (257)
T KOG3027|consen 110 YVSLVENLLTTAELYVSWNDEE----TYDEVTALRYGSVYPWPLSHILPFVKR-------RKALRELKVYDWDDKTMDQV 178 (257)
T ss_pred HHHHHHHHHHHHHHHHHhccHH----HHHHHhhhccCCCCCCcHHHHHHHHHH-------HHHHHHHhhcCcccccHHHH
Confidence 9999998776653333332211 121111111 11 111111111 111122221 2356788
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccc-----cccCCcHHHHHHHHHHhh
Q 020964 245 RAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRD-----MVEHTRIGEWYTRMERVV 310 (319)
Q Consensus 245 ~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~-----~~~~p~L~~w~~r~~~~p 310 (319)
.++...+.+.|+..|+.++||.||+||.+|..+|+++..+........ +..|+||-+++.||++..
T Consensus 179 ie~vdkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq~y 249 (257)
T KOG3027|consen 179 IEQVDKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQQY 249 (257)
T ss_pred HHHHHHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887664322 357999999999999864
No 33
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.63 E-value=2.4e-15 Score=112.99 Aligned_cols=69 Identities=26% Similarity=0.480 Sum_probs=62.4
Q ss_pred CCChhHHHHHHHHHHCCCCeEEEEcCCCChhh--hhhcCCccccEEEECCeEeechHHHHHHHHhHcCCCC
Q 020964 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKR 162 (319)
Q Consensus 94 ~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~--~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~ 162 (319)
..||||+++|++|.+|||+|+++.+++.++++ +++||.++||+|+++|..++||.+|++||++++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~~ 90 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPPK 90 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCCC
Confidence 35999999999999999999999999877664 4589999999999999999999999999999997543
No 34
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.7e-15 Score=129.77 Aligned_cols=187 Identities=19% Similarity=0.262 Sum_probs=132.2
Q ss_pred CCcEEEEeeCCChhHHHHHHHHHHCCCCeE----EEEc--C------CC-----Chhh-----------------hh---
Q 020964 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYK----VVEV--N------PI-----NKKE-----------------IK--- 127 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~----~~~~--~------~~-----~~~~-----------------~~--- 127 (319)
++.+.||..-.|||+.|+.+.+..+|+.-. ++.- + +. +..+ +.
T Consensus 35 kgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~ 114 (319)
T KOG2903|consen 35 KGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIA 114 (319)
T ss_pred CceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhc
Confidence 488999999999999999999999998732 2211 0 00 0010 11
Q ss_pred ---hcCCccccEEEE--CC-eEeechHHHHHHHH---hHcCC----CCCCCCCCC-hHHHHHHHHHHHhhhhhhhhhhHh
Q 020964 128 ---WSEYKKVPILMV--DG-EQLVDSSAIIDQLD---QKLTP----KRKADSPSG-DDEEKKWRGWVDNHLVHLLSPNIY 193 (319)
Q Consensus 128 ---~~~~~~vP~L~~--~g-~~l~eS~~I~~yL~---~~~~~----~~~~~~~~~-~~~~~~~~~~id~~l~~~~~~~~~ 193 (319)
..|+.+||+|.| .. .+-.||.+|++.+. +.+.+ +.+.+.|.. ++++..+..|+.+.++ ..+|
T Consensus 115 ~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~IN----NGVY 190 (319)
T KOG2903|consen 115 SPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKIN----NGVY 190 (319)
T ss_pred CCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceeccccc----Ccee
Confidence 237789999999 33 34579999999999 44432 113444443 4666666666665543 3445
Q ss_pred hcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHhCCCC--ccCCCCCC
Q 020964 194 RNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERAALYEAAETWVDALNGRE--FLGGSKPN 271 (319)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--fL~Gd~~T 271 (319)
+.... ++++..++....+.+.|+++|+.|+++. |++||++|
T Consensus 191 k~GFA-------------------------------------~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LT 233 (319)
T KOG2903|consen 191 KCGFA-------------------------------------EKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLT 233 (319)
T ss_pred eeccc-------------------------------------cccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccc
Confidence 54321 3344667789999999999999999887 99999999
Q ss_pred hhhHHhhhhhhhhhhccC-c-----ccc-ccCCcHHHHHHHHHHhhCc
Q 020964 272 LADLAVFGVLRPIRYLRS-G-----RDM-VEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 272 ~ADi~l~~~L~~l~~~~~-~-----~~~-~~~p~L~~w~~r~~~~pg~ 312 (319)
.||+.+|..+.+++.+.. + ..+ .+||+|..|.+++.+...+
T Consensus 234 eaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~~~~~ 281 (319)
T KOG2903|consen 234 EADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNIYWNIPG 281 (319)
T ss_pred hhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHHHhhccc
Confidence 999999999998776542 1 123 3899999999999984433
No 35
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.62 E-value=2.6e-15 Score=113.25 Aligned_cols=83 Identities=29% Similarity=0.479 Sum_probs=71.6
Q ss_pred ccccCCCCCCCCCCcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhh--hhhcCCccccEEEEC-CeEeechHH
Q 020964 73 VYAKEPLPTDLVPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE--IKWSEYKKVPILMVD-GEQLVDSSA 149 (319)
Q Consensus 73 ~~~~~~~~~~~~~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~--~~~~~~~~vP~L~~~-g~~l~eS~~ 149 (319)
..+++++.++...+.++||+++.||||++++++|.++|++|+.+.++...+.+ .+.+|.++||+|+++ |..++||.+
T Consensus 4 ~~~~~~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~~~g~~l~eS~a 83 (89)
T cd03055 4 HLAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQGKVPALEIDEGKVVYESLI 83 (89)
T ss_pred ccccCCCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEECCCCEEECHHH
Confidence 44566666666778999999999999999999999999999999998655432 348999999999986 899999999
Q ss_pred HHHHHH
Q 020964 150 IIDQLD 155 (319)
Q Consensus 150 I~~yL~ 155 (319)
|++||+
T Consensus 84 I~~yLe 89 (89)
T cd03055 84 ICEYLD 89 (89)
T ss_pred HHHhhC
Confidence 999985
No 36
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.61 E-value=2e-15 Score=108.84 Aligned_cols=69 Identities=32% Similarity=0.583 Sum_probs=60.9
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-hhhhcCCccccEEEEC-CeEeechHHHHHHHHh
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EIKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQ 156 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~~~~~~~~~vP~L~~~-g~~l~eS~~I~~yL~~ 156 (319)
++||+++.||||+|+|++|.++|++|+.+.++..... ..+.+|.++||+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 4799999999999999999999999999998865432 3567899999999985 8999999999999974
No 37
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.61 E-value=3.6e-15 Score=107.86 Aligned_cols=71 Identities=23% Similarity=0.421 Sum_probs=64.0
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-h-hhhcCCccccEEEECCeEeechHHHHHHHHhHc
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 158 (319)
++||+.+.||+|++++++|+++|++|+.+.++..+.. + .+.+|.++||+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999999865543 3 458999999999999999999999999999875
No 38
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.60 E-value=2.7e-15 Score=108.84 Aligned_cols=68 Identities=21% Similarity=0.319 Sum_probs=60.4
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC---h-hh-hhhcCCccccEEEECCeEeechHHHHHHHH
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---K-KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~---~-~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
++||+++.||+|++||++|+++|++|+.+.++... + .+ .++||.++||+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 47999999999999999999999999999987632 1 22 458999999999999999999999999985
No 39
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.59 E-value=6.7e-15 Score=106.95 Aligned_cols=71 Identities=30% Similarity=0.458 Sum_probs=62.9
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-h-hhhcCC-ccccEEEECCeEeechHHHHHHHHhHc
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEY-KKVPILMVDGEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~-~~vP~L~~~g~~l~eS~~I~~yL~~~~ 158 (319)
++||++..||+|+++|++|+++|++|+.+.++...+. + .+++|. ++||+|+++|..++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 5799999999999999999999999999998865433 3 357884 999999999999999999999999864
No 40
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.58 E-value=8.5e-15 Score=106.77 Aligned_cols=68 Identities=38% Similarity=0.634 Sum_probs=62.0
Q ss_pred cEEEEeeC-------CChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechHHHHHHHHhHcC
Q 020964 87 EVVLYQYE-------ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (319)
Q Consensus 87 ~~~Ly~~~-------~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 159 (319)
+++||++. .||||++|+++|+++|++|+.+.++.. +.+|.++||+|+++|+.++||.+|++||+++|+
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----~~~p~g~vPvl~~~g~~l~eS~~I~~yL~~~~~ 75 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----KRSPKGKLPFIELNGEKIADSELIIDHLEEKYG 75 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----cCCCCCCCCEEEECCEEEcCHHHHHHHHHHHcC
Confidence 47899998 589999999999999999999988752 468999999999999999999999999999884
No 41
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.57 E-value=9.6e-15 Score=105.93 Aligned_cols=69 Identities=28% Similarity=0.346 Sum_probs=61.3
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh----hh-hhhcCCccccEEEECCeEeechHHHHHHHHh
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~----~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~ 156 (319)
++||+++.||+|++++++|+++|++|+.+.++...+ ++ .+.+|.++||+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 589999999999999999999999999999985432 23 4489999999999999999999999999974
No 42
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.56 E-value=1.5e-14 Score=104.30 Aligned_cols=66 Identities=27% Similarity=0.467 Sum_probs=59.6
Q ss_pred EEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-h-hhhcCCccccEEEE-CCeEeechHHHHHHH
Q 020964 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E-IKWSEYKKVPILMV-DGEQLVDSSAIIDQL 154 (319)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~~~~vP~L~~-~g~~l~eS~~I~~yL 154 (319)
+||+++.||||++++++|+++|++|+.+.++...+. + .+.||.++||+|++ ||..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999875543 3 45899999999998 599999999999996
No 43
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.55 E-value=2.6e-14 Score=105.65 Aligned_cols=72 Identities=25% Similarity=0.377 Sum_probs=62.9
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC---h-hh-hhhcCCccccEEEEC---CeEeechHHHHHHHHhHc
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---K-KE-IKWSEYKKVPILMVD---GEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~---~-~~-~~~~~~~~vP~L~~~---g~~l~eS~~I~~yL~~~~ 158 (319)
+++||+++. |+|++++++|+++|++|+.+.++... . ++ .+.+|.++||+|+++ |..|+||.+|++||+++|
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 479999986 99999999999999999999988532 1 22 458999999999996 899999999999999998
Q ss_pred C
Q 020964 159 T 159 (319)
Q Consensus 159 ~ 159 (319)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 44
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.54 E-value=2.5e-14 Score=104.46 Aligned_cols=71 Identities=25% Similarity=0.332 Sum_probs=63.0
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh----hh-hhhcCCccccEEEECCeEeechHHHHHHHHhHc
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~----~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 158 (319)
++||+++.||+|++++++|+++|++|+.+.++...+ ++ .+.+|.++||+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 479999999999999999999999999999885432 12 348999999999999999999999999999875
No 45
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.53 E-value=3.4e-14 Score=103.59 Aligned_cols=70 Identities=23% Similarity=0.336 Sum_probs=62.0
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC----hhh-hhhcCCccccEEEECCeEeechHHHHHHHHhH
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~----~~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 157 (319)
++||+++.||+|+++|++|+++|++|+.+.++... ... .+.+|.++||+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 78999999999999999999999999999888542 122 44899999999999999999999999999863
No 46
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.52 E-value=3.6e-14 Score=102.91 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=62.3
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-hh-hhcCCccccEEEECCeEeechHHHHHHHHhH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~~-~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 157 (319)
+++||+++.|++|+++|++|.++|++|+.+.++...+. ++ ..+|.++||+|+++|..++||.+|++||+++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 47999999999999999999999999999999753322 23 4789999999999999999999999999763
No 47
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.51 E-value=5.4e-14 Score=101.52 Aligned_cols=68 Identities=34% Similarity=0.560 Sum_probs=60.0
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh----hh-hhhcCCccccEEEECCeEeechHHHHHHHH
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~----~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
++||+++.||+|++++++|.++|++|+.+.++.... .+ .+.+|.++||+|+++|..++||.+|++||.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 489999999999999999999999999999885321 22 348999999999999999999999999984
No 48
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.50 E-value=4.6e-14 Score=102.01 Aligned_cols=68 Identities=28% Similarity=0.390 Sum_probs=59.5
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC----hhh-hhhcCCccccEEEE-CCeEeechHHHHHHHH
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~----~~~-~~~~~~~~vP~L~~-~g~~l~eS~~I~~yL~ 155 (319)
++||+++.||+|+++|++|.++|++|+.+.++... ..+ .+.+|.++||+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 48999999999999999999999999999987532 122 45899999999995 8889999999999985
No 49
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.50 E-value=6.2e-14 Score=104.45 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHCCCCeEEEEcCCCChhh----hhhcCCccccEEEEC-CeEeechHHHHHHHHhHcC
Q 020964 94 EACPFCNKVKAFLDYYDIPYKVVEVNPINKKE----IKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQKLT 159 (319)
Q Consensus 94 ~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~----~~~~~~~~vP~L~~~-g~~l~eS~~I~~yL~~~~~ 159 (319)
..||||+|+|++|.++|++|+.+.++...... ++.+|.++||+|+++ |..++||.+|++||+++|+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGELTSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccccCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 56999999999999999999999988644332 246899999999998 9999999999999999875
No 50
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.49 E-value=7.3e-14 Score=100.87 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=61.1
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhh---hhhcCCccccEEEECCeEeechHHHHHHHHh
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE---IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~---~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~ 156 (319)
++||+++.|++|+++|++|+++|++|+.+.++...... .+.+|.++||+|+++|..++||.+|++||.+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 47999999999999999999999999999988643322 3478999999999999999999999999974
No 51
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.47 E-value=1.7e-13 Score=99.24 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=59.8
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh----hh-hhhcCCccccEEEECCeEeechHHHHHHHH
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~----~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
++||+++.||++++++++|+++|++|+.+.++.... ++ .+.+|.++||+|+++|..|+||.+|++||.
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 479999999999999999999999999998874321 22 458999999999999999999999999984
No 52
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.47 E-value=1.3e-13 Score=99.75 Aligned_cols=68 Identities=29% Similarity=0.433 Sum_probs=60.0
Q ss_pred EEEEeeCCChhHHHHHHHHHH--CCCCeEEEEcCCCChh-h-hhhcCCccccEEEE-CCeEeechHHHHHHHH
Q 020964 88 VVLYQYEACPFCNKVKAFLDY--YDIPYKVVEVNPINKK-E-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~--~gl~~~~~~~~~~~~~-~-~~~~~~~~vP~L~~-~g~~l~eS~~I~~yL~ 155 (319)
++||++..||+|+++|++|.+ +|++|+.+.++...+. + .+.+|.++||+|++ +|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 489999999999999999999 8999999999864432 3 45899999999985 8899999999999985
No 53
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.45 E-value=1.7e-13 Score=98.52 Aligned_cols=63 Identities=30% Similarity=0.517 Sum_probs=52.1
Q ss_pred CChhHHHHHHHHHHCCCCeEEEEcCC----CCh-hh-hhhcCCccccEEEE-CCeEeechHHHHHHHHhH
Q 020964 95 ACPFCNKVKAFLDYYDIPYKVVEVNP----INK-KE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 95 ~sp~~~~vr~~L~~~gl~~~~~~~~~----~~~-~~-~~~~~~~~vP~L~~-~g~~l~eS~~I~~yL~~~ 157 (319)
.||||+|++++|+++||+|+...+.. ..+ .. .+++|.++||+|++ +|..++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988732 222 22 45899999999998 899999999999999874
No 54
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.44 E-value=3.4e-13 Score=97.37 Aligned_cols=68 Identities=31% Similarity=0.447 Sum_probs=60.0
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC----hhh-hhhcCCccccEEEECCeEeechHHHHHHHH
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~----~~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
++||++..|++|+++|++|.++|++|+.+.++... ..+ .+.+|.++||+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 47999999999999999999999999999988532 123 347899999999999999999999999985
No 55
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.44 E-value=4.1e-13 Score=98.18 Aligned_cols=71 Identities=24% Similarity=0.370 Sum_probs=61.2
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC----hhh-hhhcCCccccEEEEC-CeEeechHHHHHHHHhHcC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN----KKE-IKWSEYKKVPILMVD-GEQLVDSSAIIDQLDQKLT 159 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~----~~~-~~~~~~~~vP~L~~~-g~~l~eS~~I~~yL~~~~~ 159 (319)
++||+++.| +|++||++|.++|++|+.+.++... ..+ .+.+|.++||+|+++ |..++||.+|++||+++|+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 479999876 5899999999999999999988643 223 458999999999986 8999999999999999875
No 56
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.44 E-value=4.9e-13 Score=97.33 Aligned_cols=71 Identities=25% Similarity=0.349 Sum_probs=61.3
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCC---C-hhh-hhhcCCccccEEEECCeEeechHHHHHHHHhHcC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPI---N-KKE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~---~-~~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 159 (319)
++||+++. ++|++++++|+++|++|+.+.++.. . ..+ .+.+|.++||+|+++|..++||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 47998885 6899999999999999999998853 1 123 4488999999999999999999999999999874
No 57
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.44 E-value=4.5e-13 Score=96.76 Aligned_cols=64 Identities=39% Similarity=0.596 Sum_probs=57.9
Q ss_pred EEEeeC-------CChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechHHHHHHHHhH
Q 020964 89 VLYQYE-------ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 89 ~Ly~~~-------~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 157 (319)
+||.+. .||||++++++|+++|+||+.++++... ++|.++||+|+++|..+.||.+|++||+++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-----RSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-----cCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 577776 7999999999999999999999998643 589999999999999999999999999874
No 58
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.44 E-value=4.7e-13 Score=97.47 Aligned_cols=68 Identities=29% Similarity=0.369 Sum_probs=60.3
Q ss_pred EEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC---hhh-hhhcCCccccEEEE-CCeEeechHHHHHHHHh
Q 020964 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN---KKE-IKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQ 156 (319)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~---~~~-~~~~~~~~vP~L~~-~g~~l~eS~~I~~yL~~ 156 (319)
+||+++.||+|++++++|+++|++|+.+.++... .++ .++||.++||+|++ +|..++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 6999999999999999999999999999998642 223 45899999999997 68999999999999975
No 59
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.43 E-value=6.9e-13 Score=97.68 Aligned_cols=72 Identities=18% Similarity=0.335 Sum_probs=61.2
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh-hhhh---hcCCccccEEEECCeEeechHHHHHHHHhHcC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-KEIK---WSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~-~~~~---~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 159 (319)
++||+++.++.|++++++|+++|++|+.+.++.... .+.+ ..+.++||+|++||..++||.+|++||.++|+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 589999999999999999999999999999875321 1111 22589999999999999999999999999986
No 60
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.42 E-value=5.9e-13 Score=94.24 Aligned_cols=68 Identities=28% Similarity=0.444 Sum_probs=60.4
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhh---hhhcCCccccEEEECCeEeechHHHHHHHH
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE---IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~---~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
++||+++.||+|++++++|+++|++|+.+.++...... .+.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 47999999999999999999999999999998654332 337899999999999999999999999984
No 61
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.40 E-value=1.3e-12 Score=97.00 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=60.1
Q ss_pred EEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh-----hhh-h-----hcCCccccEEEECCeEeechHHHHHHHHhH
Q 020964 89 VLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK-----KEI-K-----WSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 89 ~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~-----~~~-~-----~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 157 (319)
+||++..++.|+++|++|+++|++|+.+.++...+ ++. . ..|.++||+|+++|..++||.+|++||.++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 68999999999999999999999999999986431 221 1 129999999999999999999999999986
Q ss_pred c
Q 020964 158 L 158 (319)
Q Consensus 158 ~ 158 (319)
|
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 5
No 62
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.31 E-value=1.5e-11 Score=90.54 Aligned_cols=72 Identities=22% Similarity=0.440 Sum_probs=63.2
Q ss_pred CCCcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-hhh-hcCCccccEEEECCeEeechHHHHHHHH
Q 020964 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~~~-~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
.+.+++||+.++||||.+++.+|.++|++|+.++++..... .+. .++..+||+++++|+.++++.+|++||.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 35789999999999999999999999999999999854333 333 5789999999999999999999999984
No 63
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=3.1e-10 Score=101.57 Aligned_cols=206 Identities=16% Similarity=0.150 Sum_probs=138.4
Q ss_pred ChhHHHHHHHHHHCCCCeEEEEcC-CCChhhhhhcCCccccEEEE-CCeEeechHHHHHHHHhHcCC--CCCCCCCCChH
Q 020964 96 CPFCNKVKAFLDYYDIPYKVVEVN-PINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLDQKLTP--KRKADSPSGDD 171 (319)
Q Consensus 96 sp~~~~vr~~L~~~gl~~~~~~~~-~~~~~~~~~~~~~~vP~L~~-~g~~l~eS~~I~~yL~~~~~~--~~~~~~~~~~~ 171 (319)
|+-|..+.++++..+-|..++..+ ++. ++.+++|+|+. +|+.+.+-..|+.+|.+.-.+ ....+...+.+
T Consensus 17 d~~sL~~l~y~kl~~~~l~v~~ssN~~~------s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~kq~a 90 (313)
T KOG3028|consen 17 DPDSLAALIYLKLAGAPLKVVVSSNPWR------SPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAKQLA 90 (313)
T ss_pred ChhHHHHHHHHHHhCCCceeEeecCCCC------CCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHHHHH
Confidence 899999999999999666655444 222 68899999997 779999999999999984211 11122334468
Q ss_pred HHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhc-cCCCChhHHHHHHhhhhHHHHHHHHHH--hhhc---CchHHH
Q 020964 172 EEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITS-SGNFSFTEKLTAKYAGAAAMYFVSKKL--KKKY---NITDER 245 (319)
Q Consensus 172 ~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~ 245 (319)
...++.+|+++.+..++...+|....+..+.-..... .-+|. -....... ..++...+. .... .-+++.
T Consensus 91 ~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP--~n~~~p~~---l~~qAk~rl~l~~g~~~~~e~~i~ 165 (313)
T KOG3028|consen 91 DTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFP--LNYILPGK---LQRQAKERLQLTLGELTEREDQIY 165 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCc--hhhcchhh---hHHHHHHHHHHHhCCchhhHHHHH
Confidence 8999999999999999998888754443333222111 11111 00000000 000000000 1111 123577
Q ss_pred HHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCcc-----ccccCCcHHHHHHHHHHhhCc
Q 020964 246 AALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGR-----DMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 246 ~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~-----~~~~~p~L~~w~~r~~~~pg~ 312 (319)
.+..++++.+.+.|+.++|++||+||..|+.+++++..+...+... .+..++||-++++++......
T Consensus 166 ~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~~f~ 237 (313)
T KOG3028|consen 166 KDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRSLYFR 237 (313)
T ss_pred HHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999855444321 234589999999999876544
No 64
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.27 E-value=2.5e-11 Score=88.68 Aligned_cols=67 Identities=25% Similarity=0.326 Sum_probs=54.1
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh----hh-hhhcCC-ccccEEEEC-CeEeechHHHHHHHHh
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK----KE-IKWSEY-KKVPILMVD-GEQLVDSSAIIDQLDQ 156 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~----~~-~~~~~~-~~vP~L~~~-g~~l~eS~~I~~yL~~ 156 (319)
++||... +.+.++|++|+++|++|+.+.++...+ ++ .+.+|. ++||+|+++ |..++||.+|++||++
T Consensus 3 l~l~~~~--~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 3 LTLYNGR--GRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEESSS--TTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEECCC--CchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 4455544 489999999999999999999986332 23 458899 999999998 9999999999999975
No 65
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.27 E-value=2.4e-11 Score=87.98 Aligned_cols=63 Identities=24% Similarity=0.291 Sum_probs=55.0
Q ss_pred eCCChhHHHHHHHHHHCCCCeEEEEcCCCCh---hh-hhhcCCccccEEEECCeEeechHHHHHHHH
Q 020964 93 YEACPFCNKVKAFLDYYDIPYKVVEVNPINK---KE-IKWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 93 ~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~---~~-~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
...||+|++++++|+++|++|+.+.++.... .+ .+.+|.++||+|+++|..++||.+|++||.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 4579999999999999999999999886432 23 358999999999999999999999999984
No 66
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.25 E-value=2.3e-11 Score=96.14 Aligned_cols=108 Identities=21% Similarity=0.203 Sum_probs=82.2
Q ss_pred CCChHHHHHHHHHHHhhhhhhhhhhHhhcchhhhhhhhhhhccCCCChhHHHHHHhhhhHHHHHHHHHHhhhcCchHHHH
Q 020964 167 PSGDDEEKKWRGWVDNHLVHLLSPNIYRNTSEALESFDYITSSGNFSFTEKLTAKYAGAAAMYFVSKKLKKKYNITDERA 246 (319)
Q Consensus 167 ~~~~~~~~~~~~~id~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (319)
|..++.+.+|+.|.++.+.+.+....+.... .+ ...+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~-~~~~~~~~ 44 (115)
T cd03196 4 PAALKEMLALIAENDNEFKHHLDRYKYADRY--------------------------------------PE-ESEEEYRQ 44 (115)
T ss_pred hHHHHHHHHHHHHcchhhHHHHHhccchhhc--------------------------------------Cc-ccHHHHHH
Confidence 4457899999999999888776654432110 00 12345778
Q ss_pred HHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhcc-CccccccCCcHHHHHHHHHHhhCcc
Q 020964 247 ALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLR-SGRDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 247 ~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~-~~~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
.+.+.+..+|+.|++++|++||++|+||+++++++.++.... ....+.++|+|.+|+++|.++|...
T Consensus 45 ~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~~ 112 (115)
T cd03196 45 QAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLFS 112 (115)
T ss_pred HHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHHH
Confidence 899999999999999999999999999999999887655332 1223578999999999999998754
No 67
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.22 E-value=3.7e-11 Score=94.01 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCc
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~ 312 (319)
+...+.+.+.++.+++.|++++||+||++|+||+++++.+.++.... .++.++|+|.+|+++|.++|+.
T Consensus 42 ~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~ 110 (114)
T cd03188 42 AAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVLRWAPGVG--LDLSDWPNLAAYLARVAARPAV 110 (114)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHHHHHhhcC--CChhhChHHHHHHHHHHhCHHh
Confidence 34667899999999999998999999999999999999998766433 3456799999999999998874
No 68
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.20 E-value=1e-10 Score=84.36 Aligned_cols=69 Identities=25% Similarity=0.454 Sum_probs=60.8
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-hhh-hcCCccccEEEECCeEeechHHHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~~~-~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
+++||+.++||||.+++.+|.++|++|+.++++..... .+. ..+..+||.|+++|+.++++.+|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 68999999999999999999999999999999854422 233 5689999999999999999999999984
No 69
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.20 E-value=8e-11 Score=91.43 Aligned_cols=69 Identities=13% Similarity=0.141 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCcccc-ccCCcHHHHHHHHHHhhCc
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDM-VEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~-~~~p~L~~w~~r~~~~pg~ 312 (319)
+.....+.+.+..+++.|++++|++||++|+|||++++++.++...+ .++ ..+|+|.+|+++|.++|.-
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~--~~~~~~~p~l~~w~~~~~~rpa~ 103 (107)
T cd03186 34 EKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPALG--IELPKQAKPLKDYMERVFARDSF 103 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHHcC--CCCcccchHHHHHHHHHHCCHHH
Confidence 34677888999999999999999999999999999999987655333 222 4689999999999999874
No 70
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.19 E-value=5.9e-11 Score=93.55 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCc
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~ 312 (319)
+.....+.+.++.+++.|++++|++||++|+||+++++++.++...........+|+|.+|.++|.++|+-
T Consensus 44 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 114 (118)
T cd03187 44 EENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLPYLQYLMATPFAKLFDSRPHVKAWWEDISARPAW 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHHHHHHHHHccchhhhhcCchHHHHHHHHHhCHHH
Confidence 34567889999999999999999999999999999999998776433222345799999999999999874
No 71
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.19 E-value=7.4e-11 Score=93.31 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhh
Q 020964 243 DERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVV 310 (319)
Q Consensus 243 ~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~p 310 (319)
....++.+.++.+++.|++++||+||++|+||+++++.+.++..... ....+|+|.+|+++|.++|
T Consensus 54 ~~~~~~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~--~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 54 FINPELKKHLDFLEDRLAKKGYFVGDKLTAADIMMSFPLEAALARGP--LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred HHhHHHHHHHHHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHHHcCc--ccccCchHHHHHHHHhcCC
Confidence 45678999999999999999999999999999999998888764332 4667999999999999875
No 72
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.18 E-value=1e-10 Score=90.85 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhC
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVG 311 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg 311 (319)
+...+++.+.|+.+|+.|++++|++||++|+||+++++++....... ....++|+|.+|+++|.++|.
T Consensus 42 ~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~p~ 109 (110)
T cd03180 42 AASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSAYRWFELP--IERPPLPHLERWYARLRARPA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHHHHHHHcc--cccccCchHHHHHHHHHhCCC
Confidence 44677899999999999999999999999999999999885433222 245679999999999999875
No 73
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.17 E-value=3.9e-11 Score=90.93 Aligned_cols=71 Identities=25% Similarity=0.379 Sum_probs=60.7
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhh
Q 020964 240 NITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVV 310 (319)
Q Consensus 240 ~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~p 310 (319)
..+....++.+.|+.+++.|++++|++||++|+||+++++++.++..........++|+|.+|.++|.++|
T Consensus 25 ~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHcCC
Confidence 34567888999999999999999999999999999999999999887665322378999999999999987
No 74
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.17 E-value=1.7e-10 Score=92.33 Aligned_cols=69 Identities=29% Similarity=0.427 Sum_probs=58.5
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHH
Q 020964 240 NITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMER 308 (319)
Q Consensus 240 ~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~ 308 (319)
..+...+.+.+.++.+++.|++++|+.||+||+||+++++++.++..........++|+|.+|++||.+
T Consensus 55 ~~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 55 GREAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhc
Confidence 345788899999999999999999999999999999999999988764222224679999999999985
No 75
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.17 E-value=9.8e-11 Score=84.52 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=52.1
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechHHHHHHHHhH
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 157 (319)
..|+ +.+++|.+++++|+++|+||+.+..... -..+|.|+||+|++||..|+||.+|+.||.++
T Consensus 11 ~~~~--~~~~~~~kv~~~L~elglpye~~~~~~~----~~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 11 QILL--PDNASCLAVQTFLKMCNLPFNVRCRANA----EFMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred eeec--CCCCCHHHHHHHHHHcCCCcEEEecCCc----cccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 4444 3467899999999999999999854321 12467899999999999999999999999864
No 76
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.16 E-value=1e-10 Score=95.92 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhcc-C-----ccccccCCcHHHHHHHHHHhhCccc
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLR-S-----GRDMVEHTRIGEWYTRMERVVGESS 314 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~-~-----~~~~~~~p~L~~w~~r~~~~pg~~~ 314 (319)
+.....+.+.|+.+|+.|++++|++||++|+||+++++++.++.... . ...+.++|+|.+|+++|.++|....
T Consensus 36 ~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~ 114 (142)
T cd03190 36 DEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAE 114 (142)
T ss_pred HHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchHhh
Confidence 45677899999999999999999999999999999999987653311 0 0124579999999999999987543
No 77
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.15 E-value=3e-10 Score=89.90 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCcc
Q 020964 241 ITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 241 ~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
.+....++.+.++.+++.|++++||+||++|+||+++++++.++... .+.+..++|+|.+|+++|.++|+-.
T Consensus 36 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~~-~~~~~~~~p~l~~w~~~~~~~p~~~ 107 (118)
T cd03177 36 PEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEAL-LPLDLSKYPNVRAWLERLKALPPYE 107 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHHh-cCCChhhCchHHHHHHHHHcccchH
Confidence 44577789999999999999889999999999999999999987641 2234567999999999999998743
No 78
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.15 E-value=1.5e-10 Score=92.41 Aligned_cols=72 Identities=21% Similarity=0.340 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccC--cc---ccccCCcHHHHHHHHHHhhCccc
Q 020964 243 DERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRS--GR---DMVEHTRIGEWYTRMERVVGESS 314 (319)
Q Consensus 243 ~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~--~~---~~~~~p~L~~w~~r~~~~pg~~~ 314 (319)
.....+.+.++.+++.|++++|++||++|+||+++++++.++..... +. +..++|+|.+|+++|+++|+...
T Consensus 35 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~ 111 (126)
T cd03185 35 KAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAVKE 111 (126)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHHHH
Confidence 46778888999999999989999999999999999999888653211 11 24568999999999999987643
No 79
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.12 E-value=1.1e-10 Score=83.38 Aligned_cols=64 Identities=31% Similarity=0.515 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccc-cccCCcHHHHHHH
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRD-MVEHTRIGEWYTR 305 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~-~~~~p~L~~w~~r 305 (319)
+...+.+.+.++.+++.|++++|++||+||+||+++++++.++........ ...+|+|.+|++|
T Consensus 5 ~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 5 ERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 557889999999999999999999999999999999999999998764322 4578999999987
No 80
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.11 E-value=2.4e-10 Score=90.05 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCcccc-ccCCcHHHHHHHHHHhhC
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDM-VEHTRIGEWYTRMERVVG 311 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~-~~~p~L~~w~~r~~~~pg 311 (319)
+....++.+.|..+++.|++++|++||++|+||+++++.+.++...+ .++ ..+|+|.+|+++|.++|.
T Consensus 48 ~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aDi~l~~~~~~~~~~~--~~~~~~~p~l~~w~~~~~~~p~ 116 (117)
T cd03182 48 ERSKARAADFLAYLDTRLAGSPYVAGDRFTIADITAFVGLDFAKVVK--LRVPEELTHLRAWYDRMAARPS 116 (117)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHhHHHHhcC--CCCccccHHHHHHHHHHHhccC
Confidence 45677899999999999998899999999999999999998876543 233 478999999999999985
No 81
>PRK10638 glutaredoxin 3; Provisional
Probab=99.10 E-value=5.8e-10 Score=82.79 Aligned_cols=69 Identities=23% Similarity=0.504 Sum_probs=59.7
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hh-hhcCCccccEEEECCeEeechHHHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EI-KWSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~-~~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
+++||+.++||||.+++.+|+++|++|+.++++..... ++ +.+|..+||+|+++|+.+++..++..+-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 69999999999999999999999999999999865422 33 47899999999999999999988877643
No 82
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.09 E-value=3.2e-10 Score=90.03 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhC--CCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCccc
Q 020964 244 ERAALYEAAETWVDALN--GREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGESS 314 (319)
Q Consensus 244 ~~~~~~~~l~~le~~L~--~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~~ 314 (319)
..+.+.+.|..+++.|+ +++||+||++|+||+++++.+.++.... .++..+|+|.+|+++|.++|+...
T Consensus 45 ~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~~~p~~~~ 115 (121)
T cd03191 45 YRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNARRFG--VDLSPYPTIARINEACLELPAFQA 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHHHHhC--CCcccCcHHHHHHHHHHhChhHHH
Confidence 34567888999999997 4589999999999999999988765433 346789999999999999998654
No 83
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.06 E-value=5.4e-10 Score=89.33 Aligned_cols=74 Identities=18% Similarity=0.350 Sum_probs=60.7
Q ss_pred CchHHHHHHHHHHHHHHHHhCC--CCccCCCCCChhhHHhhhhhhhhhhccCc----cccccCCcHHHHHHHHHHhhCcc
Q 020964 240 NITDERAALYEAAETWVDALNG--REFLGGSKPNLADLAVFGVLRPIRYLRSG----RDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 240 ~~~~~~~~~~~~l~~le~~L~~--~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~----~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
..+...+.+.+.++.+++.|++ ++|++||++|+||+++++++.++...... ....++|+|.+|+++|.++|.-.
T Consensus 29 ~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v~ 108 (124)
T cd03184 29 DREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKLLLGYEFPLDRFPKLKKWMDAMKEDPAVQ 108 (124)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHhhccccCCcccChHHHHHHHHhccChHHH
Confidence 4456778899999999999975 89999999999999999999876654321 23567999999999999988654
No 84
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.05 E-value=4.1e-10 Score=88.09 Aligned_cols=71 Identities=18% Similarity=0.371 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCcc
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
+....++.+.++.+|+.|++++|++||++|+||+++++++.+....... ....+|+|.+|+++|.++|...
T Consensus 39 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~-~~~~~p~l~~w~~~~~~~p~~~ 109 (113)
T cd03178 39 ERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRLEWIGID-DLDDFPNVKRWLDRIAARPAVQ 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHHHhcccc-chhhchHHHHHHHHHhhCHHHH
Confidence 3466788899999999999899999999999999999999887644321 2456899999999999988654
No 85
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.01 E-value=1.7e-09 Score=78.21 Aligned_cols=58 Identities=31% Similarity=0.456 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechHHHHHHHHhH
Q 020964 95 ACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 95 ~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 157 (319)
.||+|.++.++|+..|+||+++..+.. ..+|.+++|+|+++|+.+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n~-----~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNNP-----WRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCCC-----CCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 379999999999999999998865531 2368999999999999999999999999875
No 86
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.00 E-value=1e-09 Score=88.14 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=58.4
Q ss_pred hcCchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccC---c--cccccCCcHHHHHHHHH
Q 020964 238 KYNITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRS---G--RDMVEHTRIGEWYTRME 307 (319)
Q Consensus 238 ~~~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~---~--~~~~~~p~L~~w~~r~~ 307 (319)
++..++..+...+.++.+++.|++++||+||+||.+|+.+|+++..+..... . ..+.++|||.+|++||+
T Consensus 52 r~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 52 DKTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRIE 126 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhcC
Confidence 3456788899999999999999999999999999999999999988764411 1 12557999999999984
No 87
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.98 E-value=1.7e-09 Score=83.00 Aligned_cols=68 Identities=26% Similarity=0.472 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhC
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVG 311 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg 311 (319)
+...+++.+.++.+++.|++++|++|+++|+||+.+++++.+... ....+.++|+|.+|+++|.++|+
T Consensus 32 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~--~~~~~~~~p~l~~~~~~~~~~p~ 99 (100)
T cd03206 32 ETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPE--GGVDLEDYPAIRRWLARIEALPG 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhc--cCCChhhCcHHHHHHHHHHhCcC
Confidence 446788999999999999999999999999999999999876433 22345679999999999999885
No 88
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.97 E-value=2.7e-09 Score=85.27 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHH-hCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHH--hhCc
Q 020964 242 TDERAALYEAAETWVDA-LNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMER--VVGE 312 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~-L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~--~pg~ 312 (319)
+...+.+.+.++.+|+. +++++|++||++|+||+++++.+.+...... .....+|+|.+|+++|.+ +|+-
T Consensus 44 ~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~-~~~~~~p~l~~w~~~~~~~~~p~~ 116 (126)
T cd03183 44 KKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQPEAAGY-DVFEGRPKLAAWRKRVKEAGNPLF 116 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHhcCC-cccccCchHHHHHHHHHHhcchhH
Confidence 34667889999999996 5667999999999999999998877664432 124679999999999999 6764
No 89
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.97 E-value=1.6e-09 Score=84.68 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHHHHHhCCC----------CccCCCCCChhhHHhhhhhhhhhhccCccc---cccCCcHHHHHHHHH
Q 020964 241 ITDERAALYEAAETWVDALNGR----------EFLGGSKPNLADLAVFGVLRPIRYLRSGRD---MVEHTRIGEWYTRME 307 (319)
Q Consensus 241 ~~~~~~~~~~~l~~le~~L~~~----------~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~---~~~~p~L~~w~~r~~ 307 (319)
++....++...+..+|+.|.++ +||+||++|+||+++++++.++...+.... ...+|+|.+|++||.
T Consensus 27 i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~ 106 (111)
T cd03204 27 LKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYFERVL 106 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHHHHHH
Confidence 3567788999999999999764 499999999999999999998775442111 246999999999999
Q ss_pred HhhC
Q 020964 308 RVVG 311 (319)
Q Consensus 308 ~~pg 311 (319)
++|+
T Consensus 107 aRps 110 (111)
T cd03204 107 QRES 110 (111)
T ss_pred cCCC
Confidence 9986
No 90
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=98.96 E-value=2.2e-09 Score=86.64 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=60.3
Q ss_pred CchHHHHHHHHHHHHHHHHhCC----------------CCccCCCCCChhhHHhhhhhhhhhhcc---Ccccc-ccCCcH
Q 020964 240 NITDERAALYEAAETWVDALNG----------------REFLGGSKPNLADLAVFGVLRPIRYLR---SGRDM-VEHTRI 299 (319)
Q Consensus 240 ~~~~~~~~~~~~l~~le~~L~~----------------~~fL~Gd~~T~ADi~l~~~L~~l~~~~---~~~~~-~~~p~L 299 (319)
..+...+.+.+.|+.|+++|.+ ++||+||++|+|||.+++.+.++.... .+..+ .++|+|
T Consensus 26 ~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L 105 (134)
T cd03198 26 LNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGL 105 (134)
T ss_pred hhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHH
Confidence 3456778899999999999986 679999999999999999998775421 12343 679999
Q ss_pred HHHHHHHHHhhCcc
Q 020964 300 GEWYTRMERVVGES 313 (319)
Q Consensus 300 ~~w~~r~~~~pg~~ 313 (319)
.+|+++|.++|+-.
T Consensus 106 ~aw~~ri~aRPsfk 119 (134)
T cd03198 106 WRYLKNAYQREEFT 119 (134)
T ss_pred HHHHHHHHCCHHHH
Confidence 99999999998744
No 91
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.96 E-value=4.3e-09 Score=76.02 Aligned_cols=66 Identities=18% Similarity=0.397 Sum_probs=56.8
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh--hhh-hhcCCccccEEEECCeEeechHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEI-KWSEYKKVPILMVDGEQLVDSSAIID 152 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~--~~~-~~~~~~~vP~L~~~g~~l~eS~~I~~ 152 (319)
+++||+.++||+|++++.+|+++|++|+.+++..... .++ +++|..+||+++.||+.|++-.++.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 6899999999999999999999999999999985432 233 37799999999999999998777655
No 92
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.95 E-value=1.3e-09 Score=84.04 Aligned_cols=64 Identities=25% Similarity=0.282 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHH
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRME 307 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~ 307 (319)
+....++.+.++.+++.|++++|++||++|+||+++++.+.++.... .+..++|+|.+|+++|+
T Consensus 42 ~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 42 AFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYTHVADEGG--FDLADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHHHhccccC--CChHhCccHHHHHHhhC
Confidence 34677888999999999998899999999999999999999876433 33567999999999974
No 93
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=98.93 E-value=5.3e-09 Score=79.88 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHH
Q 020964 247 ALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMER 308 (319)
Q Consensus 247 ~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~ 308 (319)
++.+.++.+++.|++++|++||++|+||+++++.+.+. . .....+|+|.+|++||.+
T Consensus 39 ~~~~~l~~le~~L~~~~fl~Gd~~tiADi~l~~~l~~~---~--~~~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 39 EKAAVLRALNSALGRSPWLVGSEFTVADIVSWCALLQT---G--LASAAPANVQRWLKSCEN 95 (96)
T ss_pred HHHHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHc---c--cccccChHHHHHHHHHHh
Confidence 44567778888999999999999999999999988753 1 223568999999999986
No 94
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.93 E-value=6.9e-09 Score=79.67 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=60.4
Q ss_pred CCCcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-h----h-hhcCCccccEEEECCeEeechHHHHHHH
Q 020964 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E----I-KWSEYKKVPILMVDGEQLVDSSAIIDQL 154 (319)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~----~-~~~~~~~vP~L~~~g~~l~eS~~I~~yL 154 (319)
.++++++|+.++||||.+++.+|..+|++|+.++++..... + + +.++..+||.+.++|+.|++..++....
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 45789999999999999999999999999999999854322 2 2 2568999999999999999988887753
No 95
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.92 E-value=7.4e-09 Score=77.39 Aligned_cols=72 Identities=17% Similarity=0.480 Sum_probs=59.0
Q ss_pred EEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCC--hhhhh-hcCC--ccccEEEECCeEeechHHHHHHHHhH
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPIN--KKEIK-WSEY--KKVPILMVDGEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~--~~~~~-~~~~--~~vP~L~~~g~~l~eS~~I~~yL~~~ 157 (319)
+++|+.++||||.+++.+|..+ +++|+.++++... ..++. ..+. .+||+|.++|+.++++.+|.+++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 6899999999999999999998 4678888877432 22333 4454 79999999999999999999999987
Q ss_pred cC
Q 020964 158 LT 159 (319)
Q Consensus 158 ~~ 159 (319)
++
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 64
No 96
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.91 E-value=1.3e-09 Score=83.62 Aligned_cols=65 Identities=35% Similarity=0.545 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHHHHHHHhCCCC--ccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHH
Q 020964 241 ITDERAALYEAAETWVDALNGRE--FLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMER 308 (319)
Q Consensus 241 ~~~~~~~~~~~l~~le~~L~~~~--fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~ 308 (319)
.+...+++.+.+..+++.|+.+. ||+|++||+||+++|++|..+... . .+ .++|||.+|++||++
T Consensus 33 ~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~-~-~~-~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 33 GDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWA-D-FP-KDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCC-H-HT-TTCHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhc-c-cc-cccHHHHHHHHhhcC
Confidence 34577899999999999998776 999999999999999999776643 1 11 478999999999974
No 97
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.91 E-value=2.7e-09 Score=79.85 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCc-----cccccCCcHHHHHHHHH
Q 020964 243 DERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSG-----RDMVEHTRIGEWYTRME 307 (319)
Q Consensus 243 ~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~-----~~~~~~p~L~~w~~r~~ 307 (319)
...+++.+.++.+|+.|++++|++||++|+||+++++++.++...... ..+.++|+|.+|++||.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 467789999999999999999999999999999999999887643211 12457999999999974
No 98
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=8e-09 Score=76.09 Aligned_cols=70 Identities=21% Similarity=0.505 Sum_probs=58.5
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhh----hh-hcCCccccEEEECCeEeechHHHHHHHHh
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE----IK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~----~~-~~~~~~vP~L~~~g~~l~eS~~I~~yL~~ 156 (319)
.+++|+.++||||.+++.+|..+|++|+++.++.....+ ++ .+|..+||+|+++|+.++...++.++...
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 589999999999999999999999999999998766322 33 44899999999999999877666665443
No 99
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.91 E-value=2.7e-09 Score=82.17 Aligned_cols=69 Identities=14% Similarity=0.042 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCcc
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
+....++.+.++.+++.|++++|++||++|+||+++++++.++.... .+.++|+|.+|+++|+++|.-.
T Consensus 29 ~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~---~~~~~p~l~~w~~~~~~~p~~~ 97 (103)
T cd03207 29 MAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFG---LLPERPAFDAYIARITDRPAFQ 97 (103)
T ss_pred hhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcC---CCCCChHHHHHHHHHHcCHHHH
Confidence 34567899999999999999999999999999999999999876532 2467899999999999998753
No 100
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.90 E-value=3.6e-09 Score=83.99 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCc-cccccCCcHHHHHHHHHHhhCcc
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSG-RDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~-~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
+...+++.+.|+.+++.|++++||+||++|+||+++++++.++...... ..+..+|+|.+|.++|.++|...
T Consensus 39 ~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 111 (123)
T cd03181 39 EAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIFK 111 (123)
T ss_pred HHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHHH
Confidence 3467788899999999999999999999999999999999876432211 11356899999999999988653
No 101
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.90 E-value=6.3e-09 Score=82.94 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHhCC-CCccCCCCCChhhHHhhhhhhhhhhccC---ccc-cccCCcHHHHHHHHHHhhCcc
Q 020964 242 TDERAALYEAAETWVDALNG-REFLGGSKPNLADLAVFGVLRPIRYLRS---GRD-MVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~-~~fL~Gd~~T~ADi~l~~~L~~l~~~~~---~~~-~~~~p~L~~w~~r~~~~pg~~ 313 (319)
++..+.+.+.|..+++.|++ ++||+||++|+||+++++++.++..... +.. ...+|+|.+|.++|.++|...
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~ 105 (121)
T cd03201 29 DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFV 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhh
Confidence 55667899999999999985 7999999999999999998776654211 122 257899999999999998753
No 102
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.87 E-value=1.6e-08 Score=73.17 Aligned_cols=69 Identities=22% Similarity=0.434 Sum_probs=57.2
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hh-hhcCCc-cccEEEECCeEeechHHHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EI-KWSEYK-KVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~-~~~~~~-~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
+++||+.++||+|.+++.+|.++|++|+.++++..... ++ +..+.. +||+++++|+.+++..++.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 38999999999999999999999999999999854211 22 244555 99999999999999999988643
No 103
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.86 E-value=1.6e-08 Score=71.78 Aligned_cols=67 Identities=22% Similarity=0.557 Sum_probs=57.9
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCCh--hhhh-hcCCccccEEEECCeEeechHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINK--KEIK-WSEYKKVPILMVDGEQLVDSSAIIDQ 153 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~--~~~~-~~~~~~vP~L~~~g~~l~eS~~I~~y 153 (319)
+++||+.++||+|++++.+|.+++++|..+++..... ..+. .+|..++|+++++|..++++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 4899999999999999999999999999999875442 2333 67999999999999999999988764
No 104
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.86 E-value=6.9e-09 Score=82.52 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCcc
Q 020964 243 DERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGES 313 (319)
Q Consensus 243 ~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~ 313 (319)
.....+.+.+..+++.|++++||+||++|+||+++++++.++..... ..+..+|+|.+|++||.++|...
T Consensus 35 ~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~~-~~~~~~P~l~~~~~rv~~~p~vk 104 (121)
T cd03209 35 DYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFEP-DCLDAFPNLKDFLERFEALPKIS 104 (121)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhCc-cccccChHHHHHHHHHHHCHHHH
Confidence 35667888999999999989999999999999999999988765332 23567999999999999998754
No 105
>PHA03050 glutaredoxin; Provisional
Probab=98.85 E-value=1.5e-08 Score=78.97 Aligned_cols=69 Identities=16% Similarity=0.459 Sum_probs=58.5
Q ss_pred CCCcEEEEeeCCChhHHHHHHHHHHCCC---CeEEEEcCCCCh-h----hhh-hcCCccccEEEECCeEeechHHHHH
Q 020964 84 VPKEVVLYQYEACPFCNKVKAFLDYYDI---PYKVVEVNPINK-K----EIK-WSEYKKVPILMVDGEQLVDSSAIID 152 (319)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~gl---~~~~~~~~~~~~-~----~~~-~~~~~~vP~L~~~g~~l~eS~~I~~ 152 (319)
..+++++|+.++||||.+++-+|.++|+ +|++++++.... . .+. .++..+||.++++|+.|++..++..
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 3568999999999999999999999999 899999985221 1 233 6799999999999999999888877
No 106
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.85 E-value=2.3e-08 Score=74.48 Aligned_cols=73 Identities=21% Similarity=0.459 Sum_probs=62.0
Q ss_pred cEEEEeeCCChhHHHHHHHHHH-----CCCCeEEEEcCCCC--hhhhh-hcCC--ccccEEEECCeEeechHHHHHHHHh
Q 020964 87 EVVLYQYEACPFCNKVKAFLDY-----YDIPYKVVEVNPIN--KKEIK-WSEY--KKVPILMVDGEQLVDSSAIIDQLDQ 156 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~-----~gl~~~~~~~~~~~--~~~~~-~~~~--~~vP~L~~~g~~l~eS~~I~~yL~~ 156 (319)
.+++|+.++||+|.+++-+|++ .|++|+.++++... ..++. ..+. .+||++++||+.+++..+|.+++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 5899999999999999999999 89999999998532 22333 3443 7899999999999999999999998
Q ss_pred HcC
Q 020964 157 KLT 159 (319)
Q Consensus 157 ~~~ 159 (319)
.++
T Consensus 82 ~~~ 84 (85)
T PRK11200 82 NLG 84 (85)
T ss_pred hcc
Confidence 875
No 107
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.84 E-value=1.7e-08 Score=74.56 Aligned_cols=59 Identities=10% Similarity=0.440 Sum_probs=49.9
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hhhhcCCccccEEEECCeEee
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EIKWSEYKKVPILMVDGEQLV 145 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~vP~L~~~g~~l~ 145 (319)
+++||+.++||||.+++.+|.++||+|+.++++..... .+...|..+||++++++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 58999999999999999999999999999999854322 244568899999999887664
No 108
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.83 E-value=6e-09 Score=78.92 Aligned_cols=65 Identities=31% Similarity=0.477 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCcc-ccccCCcHHHHHHHH
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGR-DMVEHTRIGEWYTRM 306 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~-~~~~~p~L~~w~~r~ 306 (319)
+...+++.+.++.+++.|++++|++|+++|+||+++++++.++....... ....+|+|.+|+++|
T Consensus 35 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 35 EEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 44677899999999999999999999999999999999999887655321 145789999999975
No 109
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.83 E-value=7.6e-09 Score=84.26 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=58.2
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCc-----cccccCCcHHHHHHHHHHh
Q 020964 240 NITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSG-----RDMVEHTRIGEWYTRMERV 309 (319)
Q Consensus 240 ~~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~-----~~~~~~p~L~~w~~r~~~~ 309 (319)
..++..++..+.++.+++.|++++||+||+||.+|+.+++++..+...... ..+..+|||.+|++||.+.
T Consensus 61 ~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~~ 135 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILSL 135 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHHh
Confidence 345677888999999999999999999999999999999999877643322 1256799999999999875
No 110
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.80 E-value=3.4e-08 Score=75.55 Aligned_cols=72 Identities=26% Similarity=0.441 Sum_probs=59.4
Q ss_pred CCCcEEEEee-----CCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hhh-hcCCccccEEEECCeEeechHHHHHHHH
Q 020964 84 VPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 84 ~~~~~~Ly~~-----~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~~-~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
.++++++|.. ++||||.+++.+|..+|++|+.++++..... .+. +++..+||.++++|+.+++..++.+...
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQ 89 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHH
Confidence 3578999987 7899999999999999999999998643211 233 6788999999999999999888887543
No 111
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.78 E-value=1.1e-08 Score=81.91 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhCC---CCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCccc
Q 020964 244 ERAALYEAAETWVDALNG---REFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGESS 314 (319)
Q Consensus 244 ~~~~~~~~l~~le~~L~~---~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~~ 314 (319)
....+.+.+..+++.|++ ++||+||++|+||+++++.+.++..... ..+..+|+|.+|++||.++|....
T Consensus 36 ~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~-~~~~~~P~l~~~~~rv~~~p~v~~ 108 (126)
T cd03210 36 YIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAP-GCLDAFPLLKAFVERLSARPKLKA 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhCh-HhhhcChHHHHHHHHHHhCcHHHH
Confidence 455688889999999974 5899999999999999999988764322 235679999999999999987543
No 112
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=98.74 E-value=3.3e-08 Score=78.62 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhC---CCCccCCCCCChhhHHhhhhhhhhhhc---cCcccc-ccCCcHHHHHHHHHHhhCc
Q 020964 247 ALYEAAETWVDALN---GREFLGGSKPNLADLAVFGVLRPIRYL---RSGRDM-VEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 247 ~~~~~l~~le~~L~---~~~fL~Gd~~T~ADi~l~~~L~~l~~~---~~~~~~-~~~p~L~~w~~r~~~~pg~ 312 (319)
++.+.++.+++.|+ +++|++| ++|+||+++++++.++... ..+.++ .++|+|.+|+++|.++|.-
T Consensus 34 ~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~ 105 (120)
T cd03203 34 EAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAY 105 (120)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHH
Confidence 45666777777776 5899999 9999999999999866431 122334 4789999999999998764
No 113
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.74 E-value=5.4e-08 Score=71.27 Aligned_cols=69 Identities=19% Similarity=0.394 Sum_probs=58.4
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hhh-hcCCccccEEEECCeEeechHHHHHHHHh
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EIK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~~-~~~~~~vP~L~~~g~~l~eS~~I~~yL~~ 156 (319)
+++|+.++||+|.+++.+|.++|++|+.++++..... ++. .++..+||+++++|+.+++..++.++-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 5899999999999999999999999999999854322 232 56899999999999999999888887554
No 114
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.73 E-value=4.6e-08 Score=77.03 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHhC-CCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCccc
Q 020964 242 TDERAALYEAAETWVDALN-GREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGESS 314 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~-~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~~ 314 (319)
+.....+.+.++.++..|+ +++||+| ++|+||+++++.+.++...+. ++ . |+|.+|++||.++|.-..
T Consensus 41 ~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~~~~~~~g~--~l-~-p~l~ay~~r~~~rPa~~~ 109 (114)
T cd03195 41 EAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALMLNRLVLNGD--PV-P-ERLRDYARRQWQRPSVQA 109 (114)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHHHHHHHcCC--CC-C-HHHHHHHHHHHCCHHHHH
Confidence 3466677788888888885 5589999 599999999999999876553 44 2 999999999999997544
No 115
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.73 E-value=7e-08 Score=70.95 Aligned_cols=70 Identities=20% Similarity=0.472 Sum_probs=60.8
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-h----h-hhcCCccccEEEECCeEeechHHHHHHHHh
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-E----I-KWSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~----~-~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~ 156 (319)
++++|+.++||+|.+++.+|.+++++|+.++++..... + + +.++..++|++.++|..+++...|+++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 48999999999999999999999999999998865432 2 3 366889999999999999999999998765
No 116
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.72 E-value=7.1e-08 Score=68.89 Aligned_cols=68 Identities=24% Similarity=0.462 Sum_probs=55.1
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh--h-hhhcCCccccEEEECCeEe--echHHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--E-IKWSEYKKVPILMVDGEQL--VDSSAIIDQL 154 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~-~~~~~~~~vP~L~~~g~~l--~eS~~I~~yL 154 (319)
+++||+.++||+|++++.+|++++++|..++++..... + .+..+...||+|+++|+.+ ++...|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 48999999999999999999999999999988754322 2 3467899999999999887 5666666654
No 117
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.72 E-value=8.9e-08 Score=72.15 Aligned_cols=71 Identities=20% Similarity=0.376 Sum_probs=59.3
Q ss_pred CCCcEEEEee-----CCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hh-hhcCCccccEEEECCeEeechHHHHHHH
Q 020964 84 VPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EI-KWSEYKKVPILMVDGEQLVDSSAIIDQL 154 (319)
Q Consensus 84 ~~~~~~Ly~~-----~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~-~~~~~~~vP~L~~~g~~l~eS~~I~~yL 154 (319)
..+++++|.. ++||||.+++.+|+.+|++|+.++++..... .+ +.++..+||.++++|+.|++...+.+..
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 3578999987 5899999999999999999999998754221 23 3678999999999999999998888754
No 118
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.71 E-value=2.5e-08 Score=81.26 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhC--CCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCccc
Q 020964 246 AALYEAAETWVDALN--GREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGESS 314 (319)
Q Consensus 246 ~~~~~~l~~le~~L~--~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~~ 314 (319)
+.+...|..+|+.|+ +++|++||++|+||+++++.+.++..... ..+..+|+|.+|++||.++|+...
T Consensus 42 ~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~-~~l~~~P~l~~~~~rv~~~P~vk~ 111 (137)
T cd03208 42 KAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELDP-SLLSDFPLLQAFKTRISNLPTIKK 111 (137)
T ss_pred HHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhch-hhhccChHHHHHHHHHHcCHHHHH
Confidence 356788899999997 67899999999999999999988764332 235679999999999999997543
No 119
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.71 E-value=3.7e-08 Score=77.61 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCcccch
Q 020964 244 ERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGESSRI 316 (319)
Q Consensus 244 ~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~~~~~ 316 (319)
...++...++.+++.+++++||+|| +|+||+++++++.++...+ .++ .|+|.+|++||.++|+...-+
T Consensus 45 ~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~--~~~--~P~l~~~~~rv~~rPsv~~~~ 112 (114)
T cd03194 45 DIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYG--LPL--SPAAQAYVDALLAHPAMQEWI 112 (114)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHCCHHHHHHH
Confidence 3344455555555555678899999 9999999999998876433 222 399999999999999765443
No 120
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.68 E-value=7.9e-08 Score=69.22 Aligned_cols=55 Identities=20% Similarity=0.538 Sum_probs=46.4
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hhhhcCCccccEEEECCe
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EIKWSEYKKVPILMVDGE 142 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~vP~L~~~g~ 142 (319)
++||+.++||+|.+++.+|+++|++|+.++++..... .++..|..+||+++++|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCCcccCEEEECCC
Confidence 5899999999999999999999999999999854322 244558889999999775
No 121
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.67 E-value=6.3e-08 Score=67.08 Aligned_cols=57 Identities=40% Similarity=0.797 Sum_probs=49.1
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hhh-hcCCccccEEEECCeEe
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EIK-WSEYKKVPILMVDGEQL 144 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~~-~~~~~~vP~L~~~g~~l 144 (319)
+++|+.++||+|.+++.+|+++|++|+.++++..... +++ ..+..++|.+..||+.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence 6899999999999999999999999999999965322 343 55999999999999865
No 122
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.7e-07 Score=71.03 Aligned_cols=71 Identities=25% Similarity=0.509 Sum_probs=62.2
Q ss_pred CCCcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-hh-----hhcCCccccEEEECCeEeechHHHHHHH
Q 020964 84 VPKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EI-----KWSEYKKVPILMVDGEQLVDSSAIIDQL 154 (319)
Q Consensus 84 ~~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~~-----~~~~~~~vP~L~~~g~~l~eS~~I~~yL 154 (319)
.++++++|+..+||||.+++.+|...++++.++++|....+ ++ ++.+..+||.+.++|+.+++..+++.+-
T Consensus 12 ~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 12 SENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred hcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 46789999999999999999999999999999999976544 32 2578899999999999999999998863
No 123
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.57 E-value=2.9e-07 Score=65.52 Aligned_cols=61 Identities=34% Similarity=0.724 Sum_probs=50.8
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hh-hhcCCccccEEEECCeEeech
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EI-KWSEYKKVPILMVDGEQLVDS 147 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~-~~~~~~~vP~L~~~g~~l~eS 147 (319)
++++|+..+||+|.+++.+|.+++++|..++++..... ++ +.++.++||+|+++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 47999999999999999999999999999999864322 23 367899999999988877653
No 124
>PRK10824 glutaredoxin-4; Provisional
Probab=98.57 E-value=2.9e-07 Score=72.27 Aligned_cols=71 Identities=20% Similarity=0.372 Sum_probs=59.3
Q ss_pred CCCcEEEEee-----CCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hhh-hcCCccccEEEECCeEeechHHHHHHH
Q 020964 84 VPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EIK-WSEYKKVPILMVDGEQLVDSSAIIDQL 154 (319)
Q Consensus 84 ~~~~~~Ly~~-----~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~~-~~~~~~vP~L~~~g~~l~eS~~I~~yL 154 (319)
.++++++|.. ++||||.+++.+|..+|++|..++++....- .+. .++..+||.+.++|+.|++..++....
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 3578999998 4899999999999999999999988743211 233 679999999999999999998888753
No 125
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.56 E-value=6.3e-08 Score=74.53 Aligned_cols=63 Identities=24% Similarity=0.291 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHhCC--CCccCCCCCChhhHHhhhhhhhhhhccCccc-cccCCcHHHHHHHH
Q 020964 243 DERAALYEAAETWVDALNG--REFLGGSKPNLADLAVFGVLRPIRYLRSGRD-MVEHTRIGEWYTRM 306 (319)
Q Consensus 243 ~~~~~~~~~l~~le~~L~~--~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~-~~~~p~L~~w~~r~ 306 (319)
...+.+...++.+++.|++ ++|++|+++|+||+++++++.++..... .. ...+|+|.+|+++|
T Consensus 39 ~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~~~~~~-~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 39 FLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYLLYLDP-KLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHHHhhCc-hhhHHhChhHHHHHHhC
Confidence 3567788889999999977 8999999999999999999988765432 22 55789999999875
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.56 E-value=3.7e-07 Score=67.27 Aligned_cols=69 Identities=25% Similarity=0.597 Sum_probs=58.3
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCC--eEEEEcCCCChh-h----hh-hcCCccccEEEECCeEeechHHHHHHHHh
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIP--YKVVEVNPINKK-E----IK-WSEYKKVPILMVDGEQLVDSSAIIDQLDQ 156 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~--~~~~~~~~~~~~-~----~~-~~~~~~vP~L~~~g~~l~eS~~I~~yL~~ 156 (319)
+++|+.++||+|.+++-+|.+++++ |+.++++..... . +. ..+..++|.+..+|+.++++.+++++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 5789999999999999999999999 999998864322 1 22 46888999999999999999999987654
No 127
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.51 E-value=7.4e-07 Score=64.43 Aligned_cols=69 Identities=19% Similarity=0.400 Sum_probs=53.6
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hh-hhc-CCccccEEEE-CCeEeec--hHHHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EI-KWS-EYKKVPILMV-DGEQLVD--SSAIIDQLD 155 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~-~~~-~~~~vP~L~~-~g~~l~e--S~~I~~yL~ 155 (319)
.++||+.++||+|++++.+|.+.|++|+.++++..... .+ +++ +...||+++. +|..+.+ +..|..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 37899999999999999999999999999988754332 22 255 8899999975 7777754 455666654
No 128
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.37 E-value=6.2e-07 Score=68.41 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccc-cccCCcHHHHHHHH
Q 020964 241 ITDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRD-MVEHTRIGEWYTRM 306 (319)
Q Consensus 241 ~~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~-~~~~p~L~~w~~r~ 306 (319)
.+....++.+.|..+|+.|++++| |++|+||+++++.+.++.....+.. ..++|+|.+|++||
T Consensus 35 ~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 35 LERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 456788999999999999998898 8999999999999988765332223 46799999999986
No 129
>PTZ00062 glutaredoxin; Provisional
Probab=98.17 E-value=8.9e-06 Score=70.46 Aligned_cols=71 Identities=21% Similarity=0.382 Sum_probs=58.9
Q ss_pred CCCCcEEEEee-----CCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hh-hhcCCccccEEEECCeEeechHHHHHH
Q 020964 83 LVPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EI-KWSEYKKVPILMVDGEQLVDSSAIIDQ 153 (319)
Q Consensus 83 ~~~~~~~Ly~~-----~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~-~~~~~~~vP~L~~~g~~l~eS~~I~~y 153 (319)
...+++.||.. +.||||++++.+|+++|++|..++++..... .+ +.++..+||.|.++|+.|++...+.+.
T Consensus 110 i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 110 IRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred HhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 34578999988 5899999999999999999999998754322 23 367899999999999999998777764
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=98.06 E-value=2.5e-05 Score=64.13 Aligned_cols=67 Identities=24% Similarity=0.442 Sum_probs=55.6
Q ss_pred cEEEEeeC------CChhHHHHHHHHHHCCCCeEEEEcCCCC--hhhhh-hcC----CccccEEEECCeEeechHHHHHH
Q 020964 87 EVVLYQYE------ACPFCNKVKAFLDYYDIPYKVVEVNPIN--KKEIK-WSE----YKKVPILMVDGEQLVDSSAIIDQ 153 (319)
Q Consensus 87 ~~~Ly~~~------~sp~~~~vr~~L~~~gl~~~~~~~~~~~--~~~~~-~~~----~~~vP~L~~~g~~l~eS~~I~~y 153 (319)
.++||... +||+|.+++.+|+.++|+|+.++++... ..++. ..+ ..+||.|.++|+.|++..++.+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 37899998 8999999999999999999999998543 22343 333 48999999999999998888874
No 131
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=98.00 E-value=2.3e-05 Score=75.31 Aligned_cols=67 Identities=24% Similarity=0.526 Sum_probs=55.9
Q ss_pred CcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh-hh--h--------hcCCccccEEEECCeEeechHHHHH
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK-EI--K--------WSEYKKVPILMVDGEQLVDSSAIID 152 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~-~~--~--------~~~~~~vP~L~~~g~~l~eS~~I~~ 152 (319)
+++++|+.++||||.+++.+|..+||+|+.++++..... ++ + .+|..+||+++.+|+.+++-.++..
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 369999999999999999999999999999999844321 11 1 2478899999999999998888876
No 132
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.72 E-value=0.00022 Score=51.26 Aligned_cols=56 Identities=29% Similarity=0.393 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHCCCC---eEEEEcCCCChhhhhhcCCccccEEEE-CCeEeechHHHHHHHH
Q 020964 95 ACPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIKWSEYKKVPILMV-DGEQLVDSSAIIDQLD 155 (319)
Q Consensus 95 ~sp~~~~vr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~vP~L~~-~g~~l~eS~~I~~yL~ 155 (319)
-+|-|..+-++|+..+.| ++++..+... ++|.+++|+|.+ +|+.+.+-..|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-----~Sptg~LP~L~~~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW-----LSPTGELPALIDSGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC-----cCCCCCCCEEEECCCcEEECHHHHHHhhC
Confidence 379999999999999999 9999877322 379999999999 9999999999999983
No 133
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.67 E-value=0.00016 Score=50.82 Aligned_cols=58 Identities=12% Similarity=0.352 Sum_probs=44.3
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhh-hhcCCccccEEEECCeEeec
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQLVD 146 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~-~~~~~~~vP~L~~~g~~l~e 146 (319)
++++|+.++||+|.+++..|+++ ++++..++++. .+++ +..+...+|++..+|+.++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~--~~~l~~~~~i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAE--FPDLADEYGVMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEccc--CHhHHHHcCCcccCEEEECCEEEEe
Confidence 48899999999999999999876 56676666653 2333 35577789999999987763
No 134
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.60 E-value=0.00025 Score=56.58 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCc
Q 020964 243 DERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 243 ~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~ 312 (319)
+..+++...|+.++..+...... ++++++.|+.+|+.|+-+..+. .+.-.|+|.+|+++|.+.-+.
T Consensus 60 ~~i~~l~~~L~~l~~ll~~~~~~-n~~ls~DDi~lFp~LR~Lt~vk---gi~~P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 60 QYIAALNALLEELDPLILSSEAV-NGQLSTDDIILFPILRNLTLVK---GLVFPPKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHcCcccc-CCcCCHHHHHHHHHHhhhhhhc---CCCCCHHHHHHHHHHHHHhCC
Confidence 45566777777777777444444 5589999999999999877655 343357999999999987653
No 135
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.57 E-value=0.00043 Score=55.65 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhCc
Q 020964 242 TDERAALYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVGE 312 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg~ 312 (319)
.+..+++...|+.++..+.......| ++|+.|+.+|+.|+-+..+. .+.-.|+|.+|+++|.++.+.
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivk---gi~~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVK---GIQWPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCT---TS---HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhcc---CCcCCHHHHHHHHHHHHHcCC
Confidence 45778888889999998886666666 99999999999999877665 343357999999999987654
No 136
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.00 E-value=0.0043 Score=44.91 Aligned_cols=55 Identities=24% Similarity=0.405 Sum_probs=43.9
Q ss_pred EEEEeeCCChhHHHH----HHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEee
Q 020964 88 VVLYQYEACPFCNKV----KAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLV 145 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~v----r~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~ 145 (319)
+.+|. ++||.|..+ ..++.+.|+.++.+.++ +..+....+...+|+|+.||+.+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~--~~~~a~~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVT--DMNEILEAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHcCCCcCCEEEECCEEEE
Confidence 67777 999999988 67888899999998888 233344458899999999997664
No 137
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0033 Score=47.39 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=55.0
Q ss_pred CCCcEEEEee-----CCChhHHHHHHHHHHCC-CCeEEEEcCCCC--hhhhh-hcCCccccEEEECCeEeechHHHHHHH
Q 020964 84 VPKEVVLYQY-----EACPFCNKVKAFLDYYD-IPYKVVEVNPIN--KKEIK-WSEYKKVPILMVDGEQLVDSSAIIDQL 154 (319)
Q Consensus 84 ~~~~~~Ly~~-----~~sp~~~~vr~~L~~~g-l~~~~~~~~~~~--~~~~~-~~~~~~vP~L~~~g~~l~eS~~I~~yL 154 (319)
.+++++||-. +.|+|+.++--+|..+| ++|..++|=... +..++ .+.-.++|.|.++|+.+++|..|.+..
T Consensus 13 ~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 13 KENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred hcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence 3578999975 56999999999999999 677777664221 12244 667789999999999999987777654
Q ss_pred H
Q 020964 155 D 155 (319)
Q Consensus 155 ~ 155 (319)
.
T Consensus 93 q 93 (105)
T COG0278 93 Q 93 (105)
T ss_pred H
Confidence 3
No 138
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=96.93 E-value=0.0065 Score=47.19 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHhCC-CCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHhhC
Q 020964 242 TDERAALYEAAETWVDALNG-REFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERVVG 311 (319)
Q Consensus 242 ~~~~~~~~~~l~~le~~L~~-~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~pg 311 (319)
+...+...+.+...+..|.. ++||+| ..++||..++.++.++...+.. -.+++..|.++.-++|+
T Consensus 42 ~~a~~~a~kL~~~a~~ll~~g~~~LFG-ewsIAD~dlA~ml~Rl~~~gd~----vP~~l~~Ya~~qwqrps 107 (117)
T PF14834_consen 42 EAAQAAAQKLIAVAERLLADGGPNLFG-EWSIADADLALMLNRLVTYGDP----VPERLADYAERQWQRPS 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--SSTTS-S--HHHHHHHHHHHHHHTTT--------HHHHHHHHHHHT-HH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCccc-cchHHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHCCHH
Confidence 34556666667777777764 689999 6999999999999998865532 14567777777777764
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.87 E-value=0.0013 Score=51.34 Aligned_cols=33 Identities=27% Similarity=0.709 Sum_probs=30.9
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNP 120 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~ 120 (319)
++||+.+.||+|++++.+|+++|++|+.+++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999999863
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.84 E-value=0.0015 Score=50.36 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=30.4
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
+++|+.+.||+|++++.+|+++|++|+.+++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 57999999999999999999999999999986
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.78 E-value=0.002 Score=51.92 Aligned_cols=34 Identities=32% Similarity=0.618 Sum_probs=31.7
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNP 120 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~ 120 (319)
+++||+.++||+|++++-+|.+.||+|+.+++..
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 3899999999999999999999999999999863
No 142
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.71 E-value=0.016 Score=43.68 Aligned_cols=66 Identities=15% Similarity=0.176 Sum_probs=50.6
Q ss_pred EEEEeeCCCh------hHHHHHHHHHHCCCCeEEEEcCCCChh--hhh-hc----CCccccEEEECCeEeechHHHHHH
Q 020964 88 VVLYQYEACP------FCNKVKAFLDYYDIPYKVVEVNPINKK--EIK-WS----EYKKVPILMVDGEQLVDSSAIIDQ 153 (319)
Q Consensus 88 ~~Ly~~~~sp------~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~~-~~----~~~~vP~L~~~g~~l~eS~~I~~y 153 (319)
|+||....+. -|++++.+|..++|+|+.++++..... ++. .. +..+||.|..+|..+++..++...
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l 80 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA 80 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence 6777776543 678899999999999999999854322 232 33 458999999999999998777663
No 143
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.62 E-value=0.0033 Score=49.40 Aligned_cols=34 Identities=26% Similarity=0.554 Sum_probs=31.6
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNP 120 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~ 120 (319)
++++|+.+.|++|++++.+|++.|++|+.+++..
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 3789999999999999999999999999999863
No 144
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.48 E-value=0.019 Score=41.55 Aligned_cols=56 Identities=18% Similarity=0.429 Sum_probs=39.8
Q ss_pred cEEEEeeCCChhHHHHHHHHHH----CCCCeEEEEcCCCChhh-hhhcCCccccEEEECCe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKE-IKWSEYKKVPILMVDGE 142 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~----~gl~~~~~~~~~~~~~~-~~~~~~~~vP~L~~~g~ 142 (319)
+++||+.++||+|..+.-.|+. .+..+....+|.....+ .+..+-..+|+++.+|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEECCE
Confidence 4789999999999999888764 34445555555433333 33457778999999876
No 145
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.013 Score=41.68 Aligned_cols=59 Identities=25% Similarity=0.565 Sum_probs=46.9
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCC------------hh---hhhhcCCccccEEEE-CCeEeec
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPIN------------KK---EIKWSEYKKVPILMV-DGEQLVD 146 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~------------~~---~~~~~~~~~vP~L~~-~g~~l~e 146 (319)
.+||+...||-|....+.|+..+++|+.+++.... .+ +.+.+++-.+|.|.. ||+++..
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 39999999999999999999999999999986211 11 134678899998875 7877763
No 146
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.35 E-value=0.027 Score=41.23 Aligned_cols=54 Identities=26% Similarity=0.589 Sum_probs=39.7
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC--CCCeEEEEcCCCChhhhh-hcCCccccEEEECC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY--DIPYKVVEVNPINKKEIK-WSEYKKVPILMVDG 141 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~--gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~~g 141 (319)
+++||+.++|+.|..++..|... ..++++..+|..+.+++. .-+ ..||+|..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc-CCCCEEEEcC
Confidence 48999999999999999999965 455666666655555554 334 4899999977
No 147
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.35 E-value=0.0052 Score=48.43 Aligned_cols=33 Identities=21% Similarity=0.636 Sum_probs=30.7
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNP 120 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~ 120 (319)
++||+.+.||+|++++-+|++.|++|+.+++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 579999999999999999999999999999863
No 148
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.29 E-value=0.0094 Score=48.10 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=31.3
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
++++|+.+.|+.|++++.+|++.|++|+.+++.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 388999999999999999999999999999986
No 149
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.27 E-value=0.007 Score=48.78 Aligned_cols=33 Identities=36% Similarity=0.627 Sum_probs=31.2
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
++++|+.+.|+.|++++.+|++.|++|+.+++.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 489999999999999999999999999999886
No 150
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.85 E-value=0.031 Score=41.78 Aligned_cols=58 Identities=19% Similarity=0.345 Sum_probs=43.2
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhhhhcCCccccEEEECCeEee
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLV 145 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~ 145 (319)
.+.+|..++||+|..+..++.+. ++.+..++++.. .......+-..+|.++.||+.+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-QDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-HHHHHHcCCccCCEEEECCEEEE
Confidence 58889999999999988877755 577777776632 22233557778999999987665
No 151
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.77 E-value=0.016 Score=45.47 Aligned_cols=33 Identities=18% Similarity=0.369 Sum_probs=31.1
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
+++||+.+.|+-|++++.+|++.|++|+.+++-
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 479999999999999999999999999999875
No 152
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.72 E-value=0.015 Score=44.89 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=30.4
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
+++|+.+.|+.|++++..|++.|++|+.+++.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 57999999999999999999999999999876
No 153
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.69 E-value=0.095 Score=37.71 Aligned_cols=58 Identities=17% Similarity=0.461 Sum_probs=41.7
Q ss_pred cEEEEeeCCChhHHHHHH----HHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeech
Q 020964 87 EVVLYQYEACPFCNKVKA----FLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDS 147 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~----~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS 147 (319)
.++++ .++||+|..+.. ++...|+.++.+++ .+.+++...+-..+|.|+.||+..+..
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~~~~~~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDI--EDFEEIEKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEET--TTHHHHHHTT-SSSSEEEETTEEEEES
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--cCHHHHHHcCCCCCCEEEECCEEEEEe
Confidence 36674 466999996654 55677888888886 344456677899999999999876543
No 154
>PHA02125 thioredoxin-like protein
Probab=95.51 E-value=0.044 Score=39.37 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=38.3
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhhhh-hcCCccccEEEECCe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMVDGE 142 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~~g~ 142 (319)
++++|+.++||.|+.+.-.|+. +.+....++.....++. ..+-..+|++. +|+
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~--~~~~~~~vd~~~~~~l~~~~~v~~~PT~~-~g~ 54 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLAN--VEYTYVDVDTDEGVELTAKHHIRSLPTLV-NTS 54 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHH--HhheEEeeeCCCCHHHHHHcCCceeCeEE-CCE
Confidence 3789999999999999888875 45666666644434433 44677899988 454
No 155
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.77 E-value=0.085 Score=34.64 Aligned_cols=52 Identities=29% Similarity=0.506 Sum_probs=39.2
Q ss_pred EEEEeeCCChhHHHHHHHHH-----HCCCCeEEEEcCCCChhhh--hhcCCccccEEEE
Q 020964 88 VVLYQYEACPFCNKVKAFLD-----YYDIPYKVVEVNPINKKEI--KWSEYKKVPILMV 139 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~-----~~gl~~~~~~~~~~~~~~~--~~~~~~~vP~L~~ 139 (319)
+++|...+||+|.+++..+. ..++.+..+.++....... ...+...+|.++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEE
Confidence 46788889999999999998 5677777777775443322 3568889998886
No 156
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.01 E-value=0.097 Score=41.83 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=31.2
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
.++||+.+.|.-|++++..|++.|++|+.+++-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 589999999999999999999999999999875
No 157
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=93.97 E-value=0.099 Score=41.20 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=31.0
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
+++||+.+.|-=|++++..|++.||+|+.++.-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 699999999999999999999999999988765
No 158
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.3 Score=42.54 Aligned_cols=72 Identities=21% Similarity=0.401 Sum_probs=57.1
Q ss_pred CCCcEEEEee-----CCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hhh-hcCCccccEEEECCeEeechHHHHHHHH
Q 020964 84 VPKEVVLYQY-----EACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EIK-WSEYKKVPILMVDGEQLVDSSAIIDQLD 155 (319)
Q Consensus 84 ~~~~~~Ly~~-----~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~~-~~~~~~vP~L~~~g~~l~eS~~I~~yL~ 155 (319)
..++++||-. +.|+|++++--.|.+.|++|...++-..+.- -++ .+.=.+.|.|.++|..+++...|.+.+.
T Consensus 137 ~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 137 KAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMHE 216 (227)
T ss_pred ccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHhh
Confidence 3578999976 5699999999999999999999988644322 244 6777899999999999998766666543
No 159
>PRK10853 putative reductase; Provisional
Probab=93.53 E-value=0.12 Score=40.90 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=30.9
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
++++|+.+.|.-|++++-.|++.|++|+.+++-
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 389999999999999999999999999999875
No 160
>PRK10026 arsenate reductase; Provisional
Probab=93.34 E-value=0.14 Score=41.65 Aligned_cols=34 Identities=9% Similarity=0.222 Sum_probs=31.7
Q ss_pred CcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
.++++|+.+.|.-|++++..|++.|++|+++++-
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 4699999999999999999999999999999864
No 161
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.63 E-value=0.43 Score=36.93 Aligned_cols=65 Identities=20% Similarity=0.451 Sum_probs=44.0
Q ss_pred CChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhhhhc--CCccccEEEE-CCe-------------EeechHHHHHH
Q 020964 95 ACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIKWS--EYKKVPILMV-DGE-------------QLVDSSAIIDQ 153 (319)
Q Consensus 95 ~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~~~~--~~~~vP~L~~-~g~-------------~l~eS~~I~~y 153 (319)
.||.|..+.=+|... .++...+....-...-+..- .....|+|+. +|. .|.|...|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 499999998888743 44444444332222223322 5678999997 332 68899999999
Q ss_pred HHhHcC
Q 020964 154 LDQKLT 159 (319)
Q Consensus 154 L~~~~~ 159 (319)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999997
No 162
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=92.52 E-value=0.19 Score=39.13 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=30.0
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
++||+.+.|.=|++++-.|++.|++|+.+++-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999999875
No 163
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=92.20 E-value=0.22 Score=38.92 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=30.0
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
++||+.+.|.=|++++..|++.|++|+.+++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 57999999999999999999999999999875
No 164
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=91.14 E-value=0.43 Score=40.11 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCC---CccCCCC-CChhhHHhhhhhhhhhh
Q 020964 247 ALYEAAETWVDALNGR---EFLGGSK-PNLADLAVFGVLRPIRY 286 (319)
Q Consensus 247 ~~~~~l~~le~~L~~~---~fL~Gd~-~T~ADi~l~~~L~~l~~ 286 (319)
...+++..+++.|++. .|++||. +|-+||.++++|.-+..
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~ 155 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLV 155 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 4666788888899888 9999987 99999999999997664
No 165
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=90.64 E-value=1.2 Score=35.16 Aligned_cols=58 Identities=16% Similarity=0.444 Sum_probs=37.2
Q ss_pred cEEEEeeCCChhHHHHH----HHHHHCCCCeEEEEcCCCCh------hh---h-hh----cCCccccEEEE--CCeEe
Q 020964 87 EVVLYQYEACPFCNKVK----AFLDYYDIPYKVVEVNPINK------KE---I-KW----SEYKKVPILMV--DGEQL 144 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr----~~L~~~gl~~~~~~~~~~~~------~~---~-~~----~~~~~vP~L~~--~g~~l 144 (319)
-++.|+.++||+|+.+. .+.++.++++..++++.... .+ + +. .+-..+|+++. +|+.+
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v 103 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQV 103 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEE
Confidence 47778889999999854 44445568888888873211 01 1 11 23455999886 88654
No 166
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=88.58 E-value=3.1 Score=29.53 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=38.4
Q ss_pred cEEEEeeCCChhHHHHHHHHHH-----CCCCeEEEEcCCCChhhhhhcCCccccEEEE--CCeE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDY-----YDIPYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQ 143 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~-----~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~--~g~~ 143 (319)
-+.+|+.++|++|+.....+.+ .++.+..++++.. ..-.+..+-..+|+++. +|+.
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~v~~~P~~~~~~~g~~ 75 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN-PELAEEYGVRSIPTFLFFKNGKE 75 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC-hhHHHhcCcccccEEEEEECCEE
Confidence 4677788899999999888877 6777777776642 21222335567898775 6653
No 167
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=87.78 E-value=1.2 Score=34.57 Aligned_cols=51 Identities=20% Similarity=0.511 Sum_probs=33.4
Q ss_pred cEEEE-eeCCChhHHHHHHHHHHCC-----CCeEEEEcCCCChhhhh-hcCCccccEEEE
Q 020964 87 EVVLY-QYEACPFCNKVKAFLDYYD-----IPYKVVEVNPINKKEIK-WSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly-~~~~sp~~~~vr~~L~~~g-----l~~~~~~~~~~~~~~~~-~~~~~~vP~L~~ 139 (319)
.+++| +.+|||+|+.++-+|++.. +.+..++++ ..+++. .-+-..+|.+..
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i 81 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD--EDKEKAEKYGVERVPTTIF 81 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC--cCHHHHHHcCCCcCCEEEE
Confidence 45555 5689999998888887553 344444444 333333 457788998886
No 168
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=86.99 E-value=5.5 Score=29.34 Aligned_cols=70 Identities=24% Similarity=0.424 Sum_probs=42.1
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC----CCCeEEEEcCCCChhh-hhhcCCccccEEEE--CCeEe------echHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQL------VDSSAIIDQ 153 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gl~~~~~~~~~~~~~~-~~~~~~~~vP~L~~--~g~~l------~eS~~I~~y 153 (319)
-++.|+.++|+.|+...-.+.++ +-++....++...... .+.-+-..+|.+.. +|+.+ .+...|.++
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~ 99 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEF 99 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHH
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHH
Confidence 46667778999999887665422 2244444444333333 33446778898875 77544 244566666
Q ss_pred HHh
Q 020964 154 LDQ 156 (319)
Q Consensus 154 L~~ 156 (319)
|.+
T Consensus 100 i~~ 102 (103)
T PF00085_consen 100 IEK 102 (103)
T ss_dssp HHH
T ss_pred HHc
Confidence 654
No 169
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=86.01 E-value=4.2 Score=30.24 Aligned_cols=58 Identities=26% Similarity=0.409 Sum_probs=35.8
Q ss_pred cEEEEeeCCChhHHHHHHHHHH----CCCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~----~gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l 144 (319)
-+.+|+.++|+.|+...-.|++ .+-.+....+|....+++. ..+-..+|.+.. +|+.+
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEE
Confidence 3566777999999988777755 2212444455543444332 445678897775 77654
No 170
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.98 E-value=0.56 Score=45.90 Aligned_cols=57 Identities=21% Similarity=0.373 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCc-cccccCCcHHHHHH
Q 020964 248 LYEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSG-RDMVEHTRIGEWYT 304 (319)
Q Consensus 248 ~~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~-~~~~~~p~L~~w~~ 304 (319)
+...+..++..|.-..||+|..+|+||+++|+.|+--...... .....+-+|.+|++
T Consensus 93 ~s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 93 ISSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYD 150 (712)
T ss_pred HHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcC
Confidence 4444556666676778999999999999999999842111110 11224567888877
No 171
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=84.79 E-value=2.4 Score=42.55 Aligned_cols=58 Identities=17% Similarity=0.332 Sum_probs=43.3
Q ss_pred CcEEEEeeCCChhHHHHHHHH----HHC-CCCeEEEEcCCCChhhhh-hcCCccccEEEECCeEee
Q 020964 86 KEVVLYQYEACPFCNKVKAFL----DYY-DIPYKVVEVNPINKKEIK-WSEYKKVPILMVDGEQLV 145 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L----~~~-gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~~g~~l~ 145 (319)
-.+++|..++||||-.+..++ .+. +|.++.+++... +++. .-+...||.++.||+.++
T Consensus 478 ~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~--~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 478 VNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF--PDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred eEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc--HHHHHhCCceecCEEEECCEEEE
Confidence 358899999999998765544 454 788888888743 2333 568889999999987654
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.16 E-value=2.9 Score=41.56 Aligned_cols=71 Identities=17% Similarity=0.391 Sum_probs=45.9
Q ss_pred CCcEEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhh-hhhcCCccccEEEECCeEeech----HHHHHHH
Q 020964 85 PKEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE-IKWSEYKKVPILMVDGEQLVDS----SAIIDQL 154 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~-~~~~~~~~vP~L~~~g~~l~eS----~~I~~yL 154 (319)
+-.+++|..+.||||-.+..++... +|..+.++.. .-++ ........||.++.||..+++. ..+++.+
T Consensus 118 ~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~--~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l 195 (515)
T TIGR03140 118 PLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGA--LFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKL 195 (515)
T ss_pred CeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEch--hCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 3468899999999999887776654 4444444333 2222 3345777999999988776543 3444555
Q ss_pred HhH
Q 020964 155 DQK 157 (319)
Q Consensus 155 ~~~ 157 (319)
.+.
T Consensus 196 ~~~ 198 (515)
T TIGR03140 196 EET 198 (515)
T ss_pred hhc
Confidence 444
No 173
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=82.98 E-value=3.9 Score=35.56 Aligned_cols=54 Identities=9% Similarity=0.260 Sum_probs=35.6
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCC---CCeEEEEcCCCChhhhh-hcCCccccEEEEC
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYD---IPYKVVEVNPINKKEIK-WSEYKKVPILMVD 140 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~g---l~~~~~~~~~~~~~~~~-~~~~~~vP~L~~~ 140 (319)
.+++|+.++||+|..+..++.+.. -......+|....+++. ..+-..+|+++.+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~ 193 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVIN 193 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEe
Confidence 567788899999999888777542 12333345543434333 5577789999873
No 174
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=82.77 E-value=1.8 Score=33.34 Aligned_cols=30 Identities=23% Similarity=0.564 Sum_probs=23.9
Q ss_pred EeeCCChhHHHHHHHHHHCCCCeEEEEcCC
Q 020964 91 YQYEACPFCNKVKAFLDYYDIPYKVVEVNP 120 (319)
Q Consensus 91 y~~~~sp~~~~vr~~L~~~gl~~~~~~~~~ 120 (319)
|+.+.|.-|++++..|++.|++|+.+++..
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k 30 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKK 30 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhh
Confidence 788999999999999999999999998863
No 175
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=82.59 E-value=12 Score=28.38 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=42.2
Q ss_pred cEEEEeeCCCh------hHHHHHHHHHHCCCCeEEEEcCCCChh--hhh-hc---------CCccccEEEECCeEeechH
Q 020964 87 EVVLYQYEACP------FCNKVKAFLDYYDIPYKVVEVNPINKK--EIK-WS---------EYKKVPILMVDGEQLVDSS 148 (319)
Q Consensus 87 ~~~Ly~~~~sp------~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~~-~~---------~~~~vP~L~~~g~~l~eS~ 148 (319)
.|++|....+. .++++..+|+.++|+|+.+++...... .+. .. +....|.|..++.-+++-.
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 36788776553 567999999999999999999863322 222 22 3444579999998888766
Q ss_pred HHHHH
Q 020964 149 AIIDQ 153 (319)
Q Consensus 149 ~I~~y 153 (319)
++.+.
T Consensus 82 ~f~ea 86 (99)
T PF04908_consen 82 DFEEA 86 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=82.49 E-value=3.4 Score=41.02 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=47.0
Q ss_pred CCcEEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhh-hhcCCccccEEEECCeEeec----hHHHHHHH
Q 020964 85 PKEVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMVDGEQLVD----SSAIIDQL 154 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~-~~~~~~~vP~L~~~g~~l~e----S~~I~~yL 154 (319)
+-.+++|..+.||||-.+..++... +|..+.++.. .-+++ .......||.++.||+.+++ -..+++.+
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~--~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGA--LFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKL 194 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEch--hCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 3468899999999999876666544 4444444333 22233 34577899999998876654 24556666
Q ss_pred HhHc
Q 020964 155 DQKL 158 (319)
Q Consensus 155 ~~~~ 158 (319)
.+..
T Consensus 195 ~~~~ 198 (517)
T PRK15317 195 DTGA 198 (517)
T ss_pred hccc
Confidence 5543
No 177
>PTZ00051 thioredoxin; Provisional
Probab=81.24 E-value=9.3 Score=28.09 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=34.7
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhh-hhhcCCccccEEEE--CCeEe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQL 144 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~-~~~~~~~~vP~L~~--~g~~l 144 (319)
-+..|+.++|+.|+...-.|... ++.+..++++ .... .+.-+-..+|+++. +|+.+
T Consensus 21 vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 21 VIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEeCCeEE
Confidence 45667778999999887666542 4545444444 2222 22346678887775 77554
No 178
>PHA03075 glutaredoxin-like protein; Provisional
Probab=81.14 E-value=2.2 Score=33.25 Aligned_cols=69 Identities=19% Similarity=0.353 Sum_probs=49.2
Q ss_pred CCcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechHHHHHHHHhHc
Q 020964 85 PKEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 158 (319)
.+.++|++.+.|+-|.-+..+|.++.-.|++..++..+ -.+..++|=+|..++... =-+.+.+||...|
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlS----fFsK~g~v~~lg~d~~y~-lInn~~~~lgne~ 70 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILS----FFSKDGQVKVLGMDKGYT-LINNFFKHLGNEY 70 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeee----eeccCCceEEEeccccee-hHHHHHHhhcccE
Confidence 46799999999999999999999999999999988432 123466777777643211 1235666666543
No 179
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=80.86 E-value=5.3 Score=29.36 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=37.0
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC----CCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l 144 (319)
-+..|+.++|+.|+++.-.|.+. ...+....++.....++. .-+-..+|+++. +|+.+
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence 35667778999999987777642 335666666654433332 235567997775 77654
No 180
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=79.14 E-value=8.3 Score=30.58 Aligned_cols=60 Identities=10% Similarity=0.305 Sum_probs=38.5
Q ss_pred EEEEeeCCChhHHHHH-HHH------HHCCCCeEEEEcCCCChhhhh---------hcCCccccEEEE---CCeEeech
Q 020964 88 VVLYQYEACPFCNKVK-AFL------DYYDIPYKVVEVNPINKKEIK---------WSEYKKVPILMV---DGEQLVDS 147 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr-~~L------~~~gl~~~~~~~~~~~~~~~~---------~~~~~~vP~L~~---~g~~l~eS 147 (319)
+..++..+|++|++.. ..+ ..++-.|..+.+|....+++. ..+..-+|+++. +|+.+..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 3336668999999773 233 333446888888765433321 235667898876 78888765
No 181
>PRK10996 thioredoxin 2; Provisional
Probab=78.18 E-value=22 Score=28.56 Aligned_cols=58 Identities=17% Similarity=0.358 Sum_probs=36.3
Q ss_pred cEEEEeeCCChhHHHHHHHHHH----CCCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~----~gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l 144 (319)
-+..|+.++|+.|+...-.|.+ .+-.+....++....+.+. ..+-..+|.++. +|+.+
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEE
Confidence 4666777899999976544443 3334555666655444433 445677887775 77654
No 182
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=77.78 E-value=17 Score=27.83 Aligned_cols=56 Identities=11% Similarity=0.242 Sum_probs=32.0
Q ss_pred cEEEEeeCCChhHHHHHHHH----HHC---CCCeEEEEcCCCChhhh-hhcCCccccEEEE--CCeEe
Q 020964 87 EVVLYQYEACPFCNKVKAFL----DYY---DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQL 144 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L----~~~---gl~~~~~~~~~~~~~~~-~~~~~~~vP~L~~--~g~~l 144 (319)
-++.|+.++|+.|+...-.+ ++. ++.+..++++ ....+ ...+-..+|.++. +|+.+
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--~~~~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--HERRLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--ccHHHHHHcCCccCCEEEEEECCEEE
Confidence 46667778999998664333 222 3444444444 22232 2346688997774 77543
No 183
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=77.78 E-value=17 Score=26.39 Aligned_cols=57 Identities=19% Similarity=0.343 Sum_probs=32.5
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC----CCCeEEEEcCCCChhhh-hhcCCccccEEEE--CCeE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQ 143 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gl~~~~~~~~~~~~~~~-~~~~~~~vP~L~~--~g~~ 143 (319)
-+..|+.++|+.|+.....|... +-......++......+ +.-+-..+|.++. +|+.
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~ 80 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE 80 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence 35556668899999886666532 22234444443333332 3346668998775 6643
No 184
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=77.50 E-value=7.2 Score=30.17 Aligned_cols=57 Identities=16% Similarity=0.245 Sum_probs=36.7
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEee
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLV 145 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l~ 145 (319)
-+..|+.++|+-|+.+.-.|+++ ++ ....+|......+. ..+-..+|+++. +|+.+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 35566668999999887777542 44 44444443333333 447778998886 887665
No 185
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=77.06 E-value=19 Score=26.94 Aligned_cols=58 Identities=19% Similarity=0.195 Sum_probs=32.9
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC----C-CCeEEEEcCCCChhhhhhcCCccccEEEE--CCeEe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY----D-IPYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQL 144 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----g-l~~~~~~~~~~~~~~~~~~~~~~vP~L~~--~g~~l 144 (319)
-+..|+.+|||.|+...-.|... + -......++.......+...-..+|+++. +|+.+
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCEEE
Confidence 35567778999999776555432 2 12233333333333333446677887665 77644
No 186
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=76.72 E-value=9.8 Score=29.64 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=34.4
Q ss_pred EEEEeeCCChhHHHHHHHHHH------CCCCeEEEEcCCCChhh-hhhcCCc-cccEEEE---CCeEee
Q 020964 88 VVLYQYEACPFCNKVKAFLDY------YDIPYKVVEVNPINKKE-IKWSEYK-KVPILMV---DGEQLV 145 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~------~gl~~~~~~~~~~~~~~-~~~~~~~-~vP~L~~---~g~~l~ 145 (319)
++.|+.++|+.|+...-.+.. .+..|..+.++...... ...+..+ .+|+++. +|+.+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 555777899999988555544 34456667776433221 2233332 4998775 666544
No 187
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=76.52 E-value=47 Score=29.23 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=44.7
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC----CCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEe------echHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL------VDSSAIIDQ 153 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l------~eS~~I~~y 153 (319)
-++.|+.+|||.|+...-.+++. +-......+|-...+++. .-+-..+|.+.. +|+.+ .....|.++
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~f 134 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAF 134 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHH
Confidence 36667779999999775554432 222344445533333332 335567887764 77654 235678888
Q ss_pred HHhHcCCC
Q 020964 154 LDQKLTPK 161 (319)
Q Consensus 154 L~~~~~~~ 161 (319)
+.+.+...
T Consensus 135 i~~~~~~~ 142 (224)
T PTZ00443 135 ALGDFKKA 142 (224)
T ss_pred HHHHHHhh
Confidence 88887543
No 188
>PRK09381 trxA thioredoxin; Provisional
Probab=73.69 E-value=32 Score=25.83 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=33.6
Q ss_pred cEEEEeeCCChhHHHHHHHHHH----CCCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEee
Q 020964 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLV 145 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~----~gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l~ 145 (319)
-+..|+.++||.|+...-.+++ .+-.+....++......+. .-+-..+|.++. +|+.+.
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~ 89 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA 89 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEE
Confidence 3555666899999977655542 2222344444433333322 335678998775 776543
No 189
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=73.42 E-value=19 Score=29.22 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=53.0
Q ss_pred CcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChh--hhhhc-CCccccEEEECCeEee---chHHHHHHHHhHc
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKK--EIKWS-EYKKVPILMVDGEQLV---DSSAIIDQLDQKL 158 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~--~~~~~-~~~~vP~L~~~g~~l~---eS~~I~~yL~~~~ 158 (319)
..++.|..+.|.+|..--..|+.+|.....+..+....- ++.+. .....=+.+++|..+- -..+|.+.|++..
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 578999999999999999999999999888887754321 12221 3344556777886552 3578999998876
No 190
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=73.16 E-value=12 Score=29.20 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=36.1
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCC----eEEEEcCCCChhhhh-hcCCccccEEEE--CCeEee
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLV 145 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~----~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l~ 145 (319)
++-|+-+|||-|+.+.-.|+++--. .....||....+++. ..+-..+|++.. +|+.+.
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE
Confidence 4447779999999886666544211 233444444444444 346677998886 887664
No 191
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=72.67 E-value=12 Score=32.38 Aligned_cols=58 Identities=19% Similarity=0.516 Sum_probs=38.3
Q ss_pred CcEEEEee---CCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeE
Q 020964 86 KEVVLYQY---EACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQ 143 (319)
Q Consensus 86 ~~~~Ly~~---~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~ 143 (319)
..+++|.. +|||.|+.+.-.|++. ++.+..+.++.....++. ..+-..+|++.. +|..
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCee
Confidence 45777877 8999999887777655 244456666643433333 457788998876 6544
No 192
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=71.45 E-value=3.2 Score=32.71 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=14.5
Q ss_pred ccccEEEE--CCeEeechHHHHHHHHhHcCC
Q 020964 132 KKVPILMV--DGEQLVDSSAIIDQLDQKLTP 160 (319)
Q Consensus 132 ~~vP~L~~--~g~~l~eS~~I~~yL~~~~~~ 160 (319)
..-|-|.+ +|..++|.++|++||..-|.+
T Consensus 34 ~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 34 ESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp --S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred cccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 35588866 789999999999999998853
No 193
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.02 E-value=9.6 Score=34.37 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=52.8
Q ss_pred CCcEEEEeeCC------ChhHHHHHHHHHHCCCCeEEEEcCCCCh--hhhh-hc----CCccccEEEECCeEeechHHHH
Q 020964 85 PKEVVLYQYEA------CPFCNKVKAFLDYYDIPYKVVEVNPINK--KEIK-WS----EYKKVPILMVDGEQLVDSSAII 151 (319)
Q Consensus 85 ~~~~~Ly~~~~------sp~~~~vr~~L~~~gl~~~~~~~~~~~~--~~~~-~~----~~~~vP~L~~~g~~l~eS~~I~ 151 (319)
+..+++|...- -=-|..||.+|+-.++-|..++|++... .+++ +- ....+|.+.++|.-|++...|+
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~ 209 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV 209 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence 45688887542 2368899999999999999999997653 3444 22 3577899999999999988887
Q ss_pred HH
Q 020964 152 DQ 153 (319)
Q Consensus 152 ~y 153 (319)
+-
T Consensus 210 ~L 211 (281)
T KOG2824|consen 210 RL 211 (281)
T ss_pred hh
Confidence 73
No 194
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=70.67 E-value=47 Score=26.72 Aligned_cols=57 Identities=12% Similarity=0.310 Sum_probs=32.4
Q ss_pred EEEEeeCCChhHHHHHHHHHHC------CCCeEEEEcCCCChhh-hhhcCCccccEEEE---CCeEe
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPINKKE-IKWSEYKKVPILMV---DGEQL 144 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~------gl~~~~~~~~~~~~~~-~~~~~~~~vP~L~~---~g~~l 144 (319)
++.|+.+||+.|+...-.|.+. ++.+..+.++...... ....+-..+|+++. +|+.+
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 4456667999998776555432 2445555555322222 23345567886664 57654
No 195
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=70.37 E-value=18 Score=28.07 Aligned_cols=18 Identities=33% Similarity=0.997 Sum_probs=14.2
Q ss_pred cEEEEeeCCChhHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKA 104 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~ 104 (319)
-++.|+.++||+|++...
T Consensus 17 vlv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 17 LLLLFSQPGCPYCDKLKR 34 (125)
T ss_pred EEEEEeCCCCHHHHHHHH
Confidence 466778889999998754
No 196
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=69.18 E-value=29 Score=25.23 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=33.9
Q ss_pred EEEEeeCCChhHHHHHHHHHHC----CCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeE
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQ 143 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~----gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~ 143 (319)
+..|+.++|+.|+...-.+.+. +-.+....++......+. .-+-..+|+++. +|+.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 4556668999999876555432 223445555544444433 335667998875 7754
No 197
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=68.31 E-value=18 Score=27.29 Aligned_cols=54 Identities=17% Similarity=0.352 Sum_probs=32.5
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC------------CCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY------------DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGE 142 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~------------gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~ 142 (319)
-++.|+.++|+.|+...-.+++. .+.+-.++++. ..++. ..+-..+|.+.. +|+
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--ESDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--CHHHHHhCCCCcCCEEEEEeCCc
Confidence 36667779999999876556422 13333444443 23332 346678898875 665
No 198
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=67.65 E-value=14 Score=29.09 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=29.2
Q ss_pred CCChhHHHHH----HHHHHCCCCeEEEEcCCCChhhhh-------hcC---CccccEEEE--CCeEeechH
Q 020964 94 EACPFCNKVK----AFLDYYDIPYKVVEVNPINKKEIK-------WSE---YKKVPILMV--DGEQLVDSS 148 (319)
Q Consensus 94 ~~sp~~~~vr----~~L~~~gl~~~~~~~~~~~~~~~~-------~~~---~~~vP~L~~--~g~~l~eS~ 148 (319)
.|||.|..+. .++....-...++.|..++++.++ ..| -..||+|+- ++..+.|..
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhh
Confidence 4799999775 555554445555555444444433 222 345899997 556676654
No 199
>PHA02278 thioredoxin-like protein
Probab=67.44 E-value=37 Score=25.76 Aligned_cols=58 Identities=17% Similarity=0.456 Sum_probs=34.4
Q ss_pred EEEEeeCCChhHHHHHHHHHHC------CCCeEEEEcCCCC--hhhh-hhcCCccccEEEE--CCeEee
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY------DIPYKVVEVNPIN--KKEI-KWSEYKKVPILMV--DGEQLV 145 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~------gl~~~~~~~~~~~--~~~~-~~~~~~~vP~L~~--~g~~l~ 145 (319)
++-|+.+||+.|+...=.+++. .+++..++++... ..++ ..-.-..+|+++. +|+.+.
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVK 86 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEE
Confidence 4446668999999776544432 2445555666421 1222 2346677888876 887653
No 200
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=66.28 E-value=19 Score=26.81 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=29.5
Q ss_pred cEEEEeeCCChhHHHHHHHH-------HHCCCCeEEEEcCCCC--h--hhh-hhcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFL-------DYYDIPYKVVEVNPIN--K--KEI-KWSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L-------~~~gl~~~~~~~~~~~--~--~~~-~~~~~~~vP~L~~ 139 (319)
-++.|+.++|++|+.....+ ...+-.+....++... . ..+ ...+-..+|+++.
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 46678889999999875333 1112134444444322 1 122 2345667897774
No 201
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=64.61 E-value=30 Score=26.45 Aligned_cols=56 Identities=20% Similarity=0.417 Sum_probs=34.7
Q ss_pred EEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEeec
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLVD 146 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l~e 146 (319)
++.|+.++|+.|+.+.-.|+.+ ++.+..++++ .. .+. ..+-..+|+++. +|+.+..
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~--~~-~l~~~~~i~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAE--KA-FLVNYLDIKVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEch--hh-HHHHhcCCCcCCEEEEEECCEEEEE
Confidence 5567778999999776666532 4444444443 22 333 335678998876 8876654
No 202
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.74 E-value=23 Score=27.91 Aligned_cols=64 Identities=22% Similarity=0.184 Sum_probs=40.4
Q ss_pred CCChhHHHH----HHHHHHCCCCeEEEEcCCCChhhhh-------hcCC--ccccEEEE-C--CeEeechHHHHHHHHhH
Q 020964 94 EACPFCNKV----KAFLDYYDIPYKVVEVNPINKKEIK-------WSEY--KKVPILMV-D--GEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 94 ~~sp~~~~v----r~~L~~~gl~~~~~~~~~~~~~~~~-------~~~~--~~vP~L~~-~--g~~l~eS~~I~~yL~~~ 157 (319)
+|||.|.++ ..+|++...+...+.|..++++.++ ..++ .-||+|.- + ++.+.|...-...|.+.
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve~ 122 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVEM 122 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHHH
Confidence 479999865 6777777777777777655554433 2222 35788885 3 34556666555666554
No 203
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=61.57 E-value=35 Score=25.15 Aligned_cols=56 Identities=16% Similarity=0.326 Sum_probs=32.3
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhh-hhcCCccccEEEE--CCe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~-~~~~~~~vP~L~~--~g~ 142 (319)
.++.|+.++||.|+...-.+.++ +..+....++......+ +..+-..+|.++. +|+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC
Confidence 47778889999999765444422 23344444443333332 2335677887775 554
No 204
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=59.27 E-value=35 Score=33.68 Aligned_cols=75 Identities=19% Similarity=0.343 Sum_probs=48.0
Q ss_pred EEEEeeCCChhHHH-------HHHHHHHCCCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeE------eechHHHH
Q 020964 88 VVLYQYEACPFCNK-------VKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQ------LVDSSAII 151 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~-------vr~~L~~~gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~------l~eS~~I~ 151 (319)
++-|+-+||..|.+ +-..|.+.|=+..+..||-....++. .-.-...|+|.. ||.. .-+...|+
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv 125 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIV 125 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHH
Confidence 34566688888864 34455566667778777744333333 234555677765 6653 35778999
Q ss_pred HHHHhHcCCCC
Q 020964 152 DQLDQKLTPKR 162 (319)
Q Consensus 152 ~yL~~~~~~~~ 162 (319)
.||-++.++..
T Consensus 126 ~wl~kq~gPa~ 136 (493)
T KOG0190|consen 126 KWLKKQSGPAS 136 (493)
T ss_pred HHHHhccCCCc
Confidence 99999887543
No 205
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=59.03 E-value=45 Score=24.38 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=31.3
Q ss_pred cEEEEeeCCChhHHHHHHHH----HHCC----CCeEEEEcCCCChhhh-hhcCCccccEEEE--CCeE
Q 020964 87 EVVLYQYEACPFCNKVKAFL----DYYD----IPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGEQ 143 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L----~~~g----l~~~~~~~~~~~~~~~-~~~~~~~vP~L~~--~g~~ 143 (319)
-+++|+.++||.|+...-.+ +... +.+..++++......+ ...+-..+|.++. +|+.
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~ 87 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKF 87 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCe
Confidence 46778888999999774333 2222 3333344443212222 2335567897765 6653
No 206
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=58.31 E-value=48 Score=27.24 Aligned_cols=58 Identities=12% Similarity=0.237 Sum_probs=33.2
Q ss_pred EEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhhh--hc-----CCccccEEEE--CCeEee
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIK--WS-----EYKKVPILMV--DGEQLV 145 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~~--~~-----~~~~vP~L~~--~g~~l~ 145 (319)
++.|+.++||.|+...-.+++. +-.+....+|....+++. .. +-.++|+++. +|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 6667778999999776555432 222444445443333322 11 1245898875 887765
No 207
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=57.97 E-value=48 Score=26.01 Aligned_cols=59 Identities=19% Similarity=0.338 Sum_probs=30.8
Q ss_pred EEEEee-------CCChhHHHHHHHH----HHCC--CCeEEEEcCCCC-----hhhhhhc-CCc-cccEEEE--CCeEee
Q 020964 88 VVLYQY-------EACPFCNKVKAFL----DYYD--IPYKVVEVNPIN-----KKEIKWS-EYK-KVPILMV--DGEQLV 145 (319)
Q Consensus 88 ~~Ly~~-------~~sp~~~~vr~~L----~~~g--l~~~~~~~~~~~-----~~~~~~~-~~~-~vP~L~~--~g~~l~ 145 (319)
++.|.. .|||.|+.+.-.| .+.. +.+..++++... ..++... .-. .+|+++. +|..+.
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceec
Confidence 445666 7999999664433 3433 444444443211 1233332 223 7998886 555444
Q ss_pred c
Q 020964 146 D 146 (319)
Q Consensus 146 e 146 (319)
|
T Consensus 105 ~ 105 (119)
T cd02952 105 E 105 (119)
T ss_pred c
Confidence 3
No 208
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=57.39 E-value=49 Score=24.58 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=30.4
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC----C--CCeEEEEcCCCChhhhh-hcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY----D--IPYKVVEVNPINKKEIK-WSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----g--l~~~~~~~~~~~~~~~~-~~~~~~vP~L~~ 139 (319)
-+..|+.++|+.|+...-.+.+. + +.+..+.++......+. ..+-..+|.++.
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 56777889999999775444332 2 33333444432233322 335667897775
No 209
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=57.30 E-value=12 Score=28.18 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=22.0
Q ss_pred CcEEEEeeCCChhHHHHHHHHHH-------CCCCeEEEEcCCCC
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDY-------YDIPYKVVEVNPIN 122 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~-------~gl~~~~~~~~~~~ 122 (319)
..+.+|..++||||++....+.. ....+.++.++...
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDD 50 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHS
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCC
Confidence 35667778999999988665542 12245666665443
No 210
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=56.40 E-value=46 Score=24.54 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=31.5
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC----CCCeEEEEcCCCChhhh-hhcCCccccEEEE--CCe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gl~~~~~~~~~~~~~~~-~~~~~~~vP~L~~--~g~ 142 (319)
-++.|+.++|+.|+...-.+.++ +-.+....++-...+.+ +..+-..+|.+.. +|+
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcCCC
Confidence 35667778999999765555432 21233444443333332 2335567898765 664
No 211
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=56.06 E-value=68 Score=23.96 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=31.8
Q ss_pred EEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCCh-hhhh-hcCCccccEEEE--CCeEe
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINK-KEIK-WSEYKKVPILMV--DGEQL 144 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~-~~~~-~~~~~~vP~L~~--~g~~l 144 (319)
++.|+.+||+.|+...-.|..+ ++.+..+.++.... .++. ..+-..+|+++. +|+.+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEE
Confidence 4556778999998776555432 34444444443211 1222 235566887665 77654
No 212
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=54.02 E-value=61 Score=26.21 Aligned_cols=73 Identities=21% Similarity=0.234 Sum_probs=44.9
Q ss_pred CcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhh---hhhcCCccc-c---EEEECCeEeechHHHHHHHHhHc
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKE---IKWSEYKKV-P---ILMVDGEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~---~~~~~~~~v-P---~L~~~g~~l~eS~~I~~yL~~~~ 158 (319)
.+++++.-..||+|...--+|..++-+..++..+...... ++..|...- + .++.+|....+|.++++-+...-
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~~L~ 87 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILRLLP 87 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHHHCC
Confidence 3444444466999998777777777776666655433322 222222111 2 22338899999999999776653
No 213
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=52.53 E-value=35 Score=25.27 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=29.9
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC----CCCeEEEEcCCCChhhhh-hcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~----gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~ 139 (319)
-++.|+.++|+.|+...-.+++. +-......++-....++. ..+-..+|.+..
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 46667778999998765444322 212333344433333332 346677887775
No 214
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=52.50 E-value=65 Score=25.00 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=37.9
Q ss_pred CcEEEEeeCC--ChhHHHHHHHHHHCCCC----eEEEEcCCCChhhhh-hcCCccccEEEE--CCeEeec
Q 020964 86 KEVVLYQYEA--CPFCNKVKAFLDYYDIP----YKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLVD 146 (319)
Q Consensus 86 ~~~~Ly~~~~--sp~~~~vr~~L~~~gl~----~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l~e 146 (319)
..+.+|+-.+ ||-|..+.-.|.+.--. .....++....+.+. ..+-..+|+|+. +|+.+..
T Consensus 29 ~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 29 DLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred CEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 3466677674 99999887777544222 233344443444444 457778998886 8877654
No 215
>PF13728 TraF: F plasmid transfer operon protein
Probab=52.41 E-value=50 Score=28.79 Aligned_cols=54 Identities=20% Similarity=0.461 Sum_probs=36.1
Q ss_pred CcEEEEeeCCChhHHH----HHHHHHHCCCCeEEEEcCCC----------ChhhhhhcCCccccEEEE
Q 020964 86 KEVVLYQYEACPFCNK----VKAFLDYYDIPYKVVEVNPI----------NKKEIKWSEYKKVPILMV 139 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~----vr~~L~~~gl~~~~~~~~~~----------~~~~~~~~~~~~vP~L~~ 139 (319)
--+.+|.-..||||+. ++.+-...|+....+.+|-. +.+..+.-+-..+|.|+.
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 3477777789999974 46666677999999988721 122222234468997774
No 216
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=52.05 E-value=24 Score=31.58 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=18.2
Q ss_pred CcEEEEeeCCChhHHHHHHHHHH
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDY 108 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~ 108 (319)
..+++|.-+.||||++.+..+..
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHHH
Confidence 45777777899999999877654
No 217
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=51.94 E-value=47 Score=24.27 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=29.4
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC-----C-CCeEEEEcCCCChhhhhhcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY-----D-IPYKVVEVNPINKKEIKWSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----g-l~~~~~~~~~~~~~~~~~~~~~~vP~L~~ 139 (319)
-+++|+.++|+.|+...-.+.+. + ..+....+|-.........+-..+|.+..
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILF 79 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEE
Confidence 46678889999999775555432 2 12444444432222111223378897775
No 218
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=51.19 E-value=52 Score=24.85 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=30.8
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC-----C--CCeEEEEcCCCChhhh-hhcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY-----D--IPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----g--l~~~~~~~~~~~~~~~-~~~~~~~vP~L~~ 139 (319)
-++.|+.++||.|+...-.+.+. + +.+-.+.++.....-. +..+-..+|.+..
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~ 84 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILF 84 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEE
Confidence 57778889999999775545432 2 3344444543222212 2346677897764
No 219
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=51.06 E-value=61 Score=27.18 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=32.3
Q ss_pred EEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEeec
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLVD 146 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l~e 146 (319)
++.|+-++||-|+.+--.|..+ ++.|..+.++ .. .+. .-+-..+|+|+. +|+.+..
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d--~~-~l~~~f~v~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRAS--AT-GASDEFDTDALPALLVYKGGELIGN 150 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEecc--ch-hhHHhCCCCCCCEEEEEECCEEEEE
Confidence 3345668999998765444322 3334334443 21 222 336678998886 8876653
No 220
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=49.40 E-value=55 Score=25.30 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=31.3
Q ss_pred cEEEEeeCCChhHHHHHHHHHHCCC----CeEEEEcCCCChhhhh--hcCCccccEEEE--CCe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYYDI----PYKVVEVNPINKKEIK--WSEYKKVPILMV--DGE 142 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~gl----~~~~~~~~~~~~~~~~--~~~~~~vP~L~~--~g~ 142 (319)
-++.|+-+||+.|+...-.++++.- ......+|-.....+. ...-..+|+|.. +|.
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEEEEEECCc
Confidence 4556777899999987666654421 1333444432222222 234466887775 654
No 221
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=48.81 E-value=81 Score=22.36 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=32.8
Q ss_pred CcEEEEeeCCChhHHHHHHHHHH----C--CCCeEEEEcCCCChhhh-hhcCCccccEEEE
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDY----Y--DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~----~--gl~~~~~~~~~~~~~~~-~~~~~~~vP~L~~ 139 (319)
.-+++|..++|++|+...-.+.+ . +-.+....++......+ +.-+-..+|.+..
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 35777888899999987666643 2 23445555554332332 2335567897765
No 222
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=48.23 E-value=25 Score=29.94 Aligned_cols=24 Identities=25% Similarity=0.627 Sum_probs=19.9
Q ss_pred CCcEEEEeeCCChhHHHHHHHHHH
Q 020964 85 PKEVVLYQYEACPFCNKVKAFLDY 108 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~ 108 (319)
+..+.+|.-+.||||++....+..
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 456778888899999999888875
No 223
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=48.14 E-value=89 Score=23.26 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=28.9
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhhh-hcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIK-WSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~ 139 (319)
-++.|+.+||+.|+...-.|+++ ++.+-.++.+. ....+. .-+-..+|++..
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~l 78 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESS-IKPSLLSRYGVVGFPTILL 78 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCC-CCHHHHHhcCCeecCEEEE
Confidence 45667778999999776555433 44443333321 222222 334567887664
No 224
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=46.52 E-value=31 Score=30.49 Aligned_cols=25 Identities=16% Similarity=0.563 Sum_probs=20.0
Q ss_pred CCcEEEEeeCCChhHHHHHHHHHHC
Q 020964 85 PKEVVLYQYEACPFCNKVKAFLDYY 109 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~~~ 109 (319)
+..+++|.-+.||||++..--|.+.
T Consensus 108 k~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 108 KHVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHH
Confidence 4567788889999999997777654
No 225
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=46.38 E-value=58 Score=27.67 Aligned_cols=44 Identities=20% Similarity=0.444 Sum_probs=27.0
Q ss_pred EEEEeeCCChhHHHH----HHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEE
Q 020964 88 VVLYQYEACPFCNKV----KAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMV 139 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~v----r~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~ 139 (319)
++.|...+||+|++- ..+-++.|+.+.-+.++. .+....|++.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~--------~~~~~fPv~~d 120 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDG--------QGDTAFPEALP 120 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCC--------CCCCCCceEec
Confidence 667777899999976 334445576555555542 11245666664
No 226
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=44.91 E-value=86 Score=22.77 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=30.8
Q ss_pred cEEEEeeCCChhHHHHHHHHHH-----CC--CCeEEEEcCCCChhhh-hhcCCccccEEEE--CCe
Q 020964 87 EVVLYQYEACPFCNKVKAFLDY-----YD--IPYKVVEVNPINKKEI-KWSEYKKVPILMV--DGE 142 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~-----~g--l~~~~~~~~~~~~~~~-~~~~~~~vP~L~~--~g~ 142 (319)
-+..|+.++|+.|+...-.+.+ .+ -.+....++-.....+ +.-+-..+|.++. +|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCC
Confidence 4667778899999976444422 22 1344444443222222 2335567887764 664
No 227
>PTZ00102 disulphide isomerase; Provisional
Probab=44.68 E-value=1.3e+02 Score=29.23 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=43.5
Q ss_pred CcEEEEeeCCChhHHHHHHHH-------HHCCCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEe-----echHHH
Q 020964 86 KEVVLYQYEACPFCNKVKAFL-------DYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL-----VDSSAI 150 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L-------~~~gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l-----~eS~~I 150 (319)
.-++.|+.+||++|++..-.+ ...+-++....++-.....+. ..+-..+|.+.. +|..+ .....|
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceEEecCCCCHHHH
Confidence 357778889999998764222 223334455444433333332 334456887764 55432 356778
Q ss_pred HHHHHhHcCC
Q 020964 151 IDQLDQKLTP 160 (319)
Q Consensus 151 ~~yL~~~~~~ 160 (319)
++++.+..+.
T Consensus 131 ~~~l~~~~~~ 140 (477)
T PTZ00102 131 VSWIKKLTGP 140 (477)
T ss_pred HHHHHHhhCC
Confidence 8999887653
No 228
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=42.21 E-value=1e+02 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.232 Sum_probs=20.4
Q ss_pred CCCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEe
Q 020964 109 YDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (319)
Q Consensus 109 ~gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l 144 (319)
.++.+-.++++ ...++. ..+-..+|+|+. +|+.+
T Consensus 64 ~~v~~~kVD~d--~~~~La~~~~I~~iPTl~lfk~G~~v 100 (120)
T cd03065 64 KGIGFGLVDSK--KDAKVAKKLGLDEEDSIYVFKDDEVI 100 (120)
T ss_pred CCCEEEEEeCC--CCHHHHHHcCCccccEEEEEECCEEE
Confidence 35555555555 334443 457788898876 88643
No 229
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=41.81 E-value=97 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=17.3
Q ss_pred EEEEeeCCChhHHHHHHHHH---HCCCCeEEEEc
Q 020964 88 VVLYQYEACPFCNKVKAFLD---YYDIPYKVVEV 118 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~---~~gl~~~~~~~ 118 (319)
+..|...+||.|++..-.|. ..|+.+..+..
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~ 100 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDY 100 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 34455678999987644443 33544444443
No 230
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=41.39 E-value=76 Score=27.68 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=51.2
Q ss_pred CcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhhhh-hcCCccccEEEECCeEee----chHHHHHHHH
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIK-WSEYKKVPILMVDGEQLV----DSSAIIDQLD 155 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~~g~~l~----eS~~I~~yL~ 155 (319)
-++++|.-..|.-|...-.+|+.+|+--.+.-++...+..+. .++--.||-+..||+.+. |-.+|-.-+.
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~Vf~DGel~~~dpVdp~~ies~~~ 85 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPFLAFEKGVISVPSVFIDGELVYADPVDPEEIESILS 85 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChHHHhhcceeecceEEEcCeEEEcCCCCHHHHHHHHc
Confidence 468899999999999999999999988666666644444334 346778999999998764 4445544443
No 231
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=40.10 E-value=1.5e+02 Score=28.44 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=42.3
Q ss_pred cEEEEeeCCChhHHHHHHHHH-------HCC--CCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeE-e------ech
Q 020964 87 EVVLYQYEACPFCNKVKAFLD-------YYD--IPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQ-L------VDS 147 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~-------~~g--l~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~-l------~eS 147 (319)
-+++|+.+||+.|+...-.+. ..+ +.+..+.|+. ..++. .-+-..+|++.. +|.. + .+.
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 98 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDA 98 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCccccEEEEEeCCccceeEecCCCCH
Confidence 467788899999997643332 233 4444445543 23332 335556787764 5543 1 256
Q ss_pred HHHHHHHHhHcC
Q 020964 148 SAIIDQLDQKLT 159 (319)
Q Consensus 148 ~~I~~yL~~~~~ 159 (319)
..|.+++.+..+
T Consensus 99 ~~l~~~i~~~~~ 110 (462)
T TIGR01130 99 DGIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHHhcC
Confidence 778888888765
No 232
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=38.58 E-value=92 Score=23.59 Aligned_cols=67 Identities=22% Similarity=0.377 Sum_probs=38.2
Q ss_pred EeeCCChhHHHHHHHHHHCCC--CeEEEEcCCCChhh-hh---hc--CCccccEEEECCe-EeechHHHHHHHHhH
Q 020964 91 YQYEACPFCNKVKAFLDYYDI--PYKVVEVNPINKKE-IK---WS--EYKKVPILMVDGE-QLVDSSAIIDQLDQK 157 (319)
Q Consensus 91 y~~~~sp~~~~vr~~L~~~gl--~~~~~~~~~~~~~~-~~---~~--~~~~vP~L~~~g~-~l~eS~~I~~yL~~~ 157 (319)
|+-..||+|....-.+...+- .+..+.+......+ ++ ++ -..+.-.+..+|+ ...++.++..-+...
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHHc
Confidence 334569999999888887765 34444442111111 11 11 1122333345776 888999988875543
No 233
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=37.89 E-value=88 Score=25.92 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=24.9
Q ss_pred CcEE-E-EeeCCChhHH-------HHHHHHHHCCCCeEEEEcCCCCh
Q 020964 86 KEVV-L-YQYEACPFCN-------KVKAFLDYYDIPYKVVEVNPINK 123 (319)
Q Consensus 86 ~~~~-L-y~~~~sp~~~-------~vr~~L~~~gl~~~~~~~~~~~~ 123 (319)
++++ | |+..+||-|+ ++-..+...+-|++++-|+....
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~ 79 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRD 79 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCC
Confidence 3444 4 3446898886 44556666677899998886443
No 234
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=37.29 E-value=1.3e+02 Score=24.77 Aligned_cols=57 Identities=25% Similarity=0.420 Sum_probs=38.1
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCC----CeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEe
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDI----PYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQL 144 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl----~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l 144 (319)
++=|+-+||.-|+.+--.|+++.- .++...+|..+..++. --+-.-||+++. ||+.+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEEECCEEe
Confidence 555888999999977666665533 3455566665555544 336678998876 88765
No 235
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=36.75 E-value=1.3e+02 Score=22.15 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=28.3
Q ss_pred cEEEEeeCCChhHHHHHHHHHH----C---CCCeEEEEcCCCChhhh-hhcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDY----Y---DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~----~---gl~~~~~~~~~~~~~~~-~~~~~~~vP~L~~ 139 (319)
-++.|+.++||.|++..-.+.+ . +..+....++......+ +..+-..+|.++.
T Consensus 18 vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l 78 (104)
T cd03000 18 WLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKL 78 (104)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEE
Confidence 3555777889999966433422 2 33344433443222232 2335567887765
No 236
>PLN02309 5'-adenylylsulfate reductase
Probab=35.76 E-value=1.7e+02 Score=28.84 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=30.0
Q ss_pred cEEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCC-Chhhhh--hcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPI-NKKEIK--WSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~-~~~~~~--~~~~~~vP~L~~ 139 (319)
-++.|+-+||++|+.+.-.+.+. +-.+.+..++-. ...++. ...-..+|+|+.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILL 428 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceeeEEEE
Confidence 46778889999999765544332 223333444322 222222 235567888875
No 237
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=35.25 E-value=1.1e+02 Score=26.03 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=32.5
Q ss_pred EEEEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhhhhhcCCccccEEEE--CCeEee
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKEIKWSEYKKVPILMV--DGEQLV 145 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~--~g~~l~ 145 (319)
++.|+-++|+-|+.+--.|..+ ++.|..+.++. ....-+-..+|+|.. +|+.+.
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~----~~~~~~i~~lPTlliyk~G~~v~ 166 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ----CIPNYPDKNLPTILVYRNGDIVK 166 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH----hHhhCCCCCCCEEEEEECCEEEE
Confidence 3345568899999775555433 34343343331 123346778998886 887654
No 238
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=34.58 E-value=1.3e+02 Score=21.76 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=30.5
Q ss_pred cEEEEeeCCChhHHHHHHHHHH----CC--CCeEEEEcCCCC-hhhh-hhcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDY----YD--IPYKVVEVNPIN-KKEI-KWSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~----~g--l~~~~~~~~~~~-~~~~-~~~~~~~vP~L~~ 139 (319)
-+..|+.++|+.|+...-.+.. .+ -.+....++... .+.+ +.-+-..+|.++.
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 4667888999999866444432 22 235555555433 2332 2235567897764
No 239
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=33.82 E-value=50 Score=26.25 Aligned_cols=53 Identities=13% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCcEEEEeeCCChhHHHH----HHHHHHC-CCCeEEEEcCCCChhh----hhhcCCccccEEEE
Q 020964 85 PKEVVLYQYEACPFCNKV----KAFLDYY-DIPYKVVEVNPINKKE----IKWSEYKKVPILMV 139 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~v----r~~L~~~-gl~~~~~~~~~~~~~~----~~~~~~~~vP~L~~ 139 (319)
+..+.++.-.|||-|++. .-++++. +|+..++..+ ...+ ...++...||+++.
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd--~~~el~~~~lt~g~~~IP~~I~ 103 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRD--ENKELMDQYLTNGGRSIPTFIF 103 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HH--HHHHHTTTTTT-SS--SSEEEE
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEec--CChhHHHHHHhCCCeecCEEEE
Confidence 346888888999999855 3333444 5666666543 1112 11368899998886
No 240
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=33.77 E-value=43 Score=29.48 Aligned_cols=55 Identities=16% Similarity=0.353 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCCccCCCCCChhhHHhhhhhhhhhhccCccccccCCcHHHHHHHHHHh
Q 020964 249 YEAAETWVDALNGREFLGGSKPNLADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRMERV 309 (319)
Q Consensus 249 ~~~l~~le~~L~~~~fL~Gd~~T~ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~~~ 309 (319)
...+..++..|.++.|.-|.+++-+|+.+|.-+.-- + .-..+++...|++.+++.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e---p---~s~~~v~~~~w~~~l~a~ 64 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE---P---QSARLVNAERWYSKLEAL 64 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC---c---chhhhhHHHHHHHHHHHH
Confidence 345677888999999999999999999998877520 1 123467778888777643
No 241
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=33.29 E-value=74 Score=24.97 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=26.3
Q ss_pred CcEEEEe--eCCChhHHHHHHHHH-------HCCCCeEEEEcCCCChhhh---hhcCCccccEEEECC
Q 020964 86 KEVVLYQ--YEACPFCNKVKAFLD-------YYDIPYKVVEVNPINKKEI---KWSEYKKVPILMVDG 141 (319)
Q Consensus 86 ~~~~Ly~--~~~sp~~~~vr~~L~-------~~gl~~~~~~~~~~~~~~~---~~~~~~~vP~L~~~g 141 (319)
+.++|+- ..+||.|+.-.-.|. ..|+. ++-|........ ........|++.|.+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~--vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~ 89 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVE--LVAVGPESPEKLEAFDKGKFLPFPVYADPD 89 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeE--EEEEeCCCHHHHHHHHHhcCCCCeEEECCc
Confidence 3444443 468999986433332 24554 444443332222 122334578777743
No 242
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=33.00 E-value=65 Score=23.32 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=30.2
Q ss_pred CcEEEEeeCCChhHHHHHHHHHH-----CCC-CeEEEEcCCCChhhhh-hcCCccccEEEE
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDY-----YDI-PYKVVEVNPINKKEIK-WSEYKKVPILMV 139 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~-----~gl-~~~~~~~~~~~~~~~~-~~~~~~vP~L~~ 139 (319)
.-+++|+.++|+.|+.....+.. .+- .+....++-.....+. .-+-..+|.+..
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKF 75 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEE
Confidence 34778888999999976554432 221 1333333432233332 335677997754
No 243
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=32.19 E-value=53 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=17.1
Q ss_pred EEEEeeCCChhHHHHHHHHHHC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY 109 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~ 109 (319)
+.+|.-..||+|....-.|...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4577778899999887777654
No 244
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=32.08 E-value=60 Score=22.17 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=20.7
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCCeEEEEcC
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~ 119 (319)
++||.+..-.-+..++-.|++.||++.+....
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 46788777778889999999999999998655
No 245
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=32.04 E-value=2.3e+02 Score=27.93 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=29.2
Q ss_pred EEEEeeCCChhHHHHHHHHHHC-------CCCeEEEEcCCCChhhh-hhcCCccccEEEE
Q 020964 88 VVLYQYEACPFCNKVKAFLDYY-------DIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~-------gl~~~~~~~~~~~~~~~-~~~~~~~vP~L~~ 139 (319)
++.|+-++||+|+...-.+++. ++.+..+.++....... ....-..+|++..
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 5557778999999765444322 24445555553322222 1234557887775
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.16 E-value=1.5e+02 Score=27.28 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=51.4
Q ss_pred cEEEEeeCCChhHHHHHHHHH----HCCCCeEEEEcCCCChhhhh-hcCCccccEEEE--CCeEee------chHHHHHH
Q 020964 87 EVVLYQYEACPFCNKVKAFLD----YYDIPYKVVEVNPINKKEIK-WSEYKKVPILMV--DGEQLV------DSSAIIDQ 153 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~----~~gl~~~~~~~~~~~~~~~~-~~~~~~vP~L~~--~g~~l~------eS~~I~~y 153 (319)
-+++|+.++|+-|...--.|+ +.+=.|.+..||....+.+. .-+-..+|+++. +|.++- .-..|-++
T Consensus 46 VlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ 125 (304)
T COG3118 46 VLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQF 125 (304)
T ss_pred eEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHH
Confidence 477788899999987766665 34556777777766655554 457788997774 886652 23578888
Q ss_pred HHhHcCC
Q 020964 154 LDQKLTP 160 (319)
Q Consensus 154 L~~~~~~ 160 (319)
|++..+.
T Consensus 126 ld~~~~~ 132 (304)
T COG3118 126 LDKVLPA 132 (304)
T ss_pred HHHhcCh
Confidence 8887653
No 247
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=30.48 E-value=2.1e+02 Score=20.63 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=28.3
Q ss_pred cEEEEeeCCChhHHHHHHHHHH----CCCCeEEEEcCCCChhhh-hhcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFLDY----YDIPYKVVEVNPINKKEI-KWSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L~~----~gl~~~~~~~~~~~~~~~-~~~~~~~vP~L~~ 139 (319)
-+.+|+.++|+.|+...-.+.+ ..-.+....++......+ +.-+-..+|.+..
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEE
Confidence 3566777899999977544432 211233333333333333 2224466897764
No 248
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=29.34 E-value=56 Score=25.19 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=21.0
Q ss_pred ccEEE-ECCeEeechHHHHHHHHhHc
Q 020964 134 VPILM-VDGEQLVDSSAIIDQLDQKL 158 (319)
Q Consensus 134 vP~L~-~~g~~l~eS~~I~~yL~~~~ 158 (319)
+|.+. .+|+++++|..|.++..+++
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H 27 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRH 27 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcch
Confidence 46555 49999999999999998876
No 249
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=28.37 E-value=86 Score=25.98 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=26.3
Q ss_pred cEEEEeeCCChhHHHHH----HHHHHC-CCCeEEEEcCCCC
Q 020964 87 EVVLYQYEACPFCNKVK----AFLDYY-DIPYKVVEVNPIN 122 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr----~~L~~~-gl~~~~~~~~~~~ 122 (319)
.|++|.-..||||.... .++.+. ++.++.+.+....
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 37888889999998554 444455 8888888887544
No 250
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=27.95 E-value=69 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=17.4
Q ss_pred CcEEEEeeCCChhHHHHHHHHHH
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDY 108 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~ 108 (319)
-.|+.|.-..||+|++..-.+..
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHH
Confidence 45777777899999988665543
No 251
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.29 E-value=1.3e+02 Score=26.52 Aligned_cols=59 Identities=27% Similarity=0.438 Sum_probs=32.1
Q ss_pred CcEEEEeeCCChhHHHHHHHHH----HCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechHHHHHHHHhHcC
Q 020964 86 KEVVLYQYEACPFCNKVKAFLD----YYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLT 159 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~----~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 159 (319)
-.|.+|+-..||||..-+-.|+ +.+-.+ .+++. +.|+...|.+.-.| .++.+||.++|+
T Consensus 6 i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~-~v~i~--------w~pf~l~p~~~~~g------~~~~~~l~~k~g 68 (225)
T COG2761 6 IEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV-RVEIR--------WRPFELDPDLPPEG------LDRKEYLAQKYG 68 (225)
T ss_pred EEEEEEeCCcCchhhcCHHHHHHHHHhcCcce-eEEEE--------ecccccCCCCCccc------ccHHHHHHHHhC
Confidence 3577777789999985544444 444333 22222 13455555444332 355566666665
No 252
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=26.80 E-value=2.8e+02 Score=25.00 Aligned_cols=53 Identities=21% Similarity=0.451 Sum_probs=30.0
Q ss_pred cEEEEeeCCChhHHHHHHHH----HHCCCCeEEEEcCCCC----------hhhhhhcCCccccEEEE
Q 020964 87 EVVLYQYEACPFCNKVKAFL----DYYDIPYKVVEVNPIN----------KKEIKWSEYKKVPILMV 139 (319)
Q Consensus 87 ~~~Ly~~~~sp~~~~vr~~L----~~~gl~~~~~~~~~~~----------~~~~~~~~~~~vP~L~~ 139 (319)
-++.|.-.+||+|+...-.| ++.|+.+..+.++... .+..+.-+-..+|.++.
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL 235 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence 35556667899999664444 3456666556665321 11122235567887764
No 253
>PTZ00062 glutaredoxin; Provisional
Probab=26.62 E-value=4.2e+02 Score=22.87 Aligned_cols=65 Identities=8% Similarity=0.080 Sum_probs=41.5
Q ss_pred EEEEeeCCChhHHHHHHHHHHCCCC---eEEEEcCCCChhhhhhcCCccccEEEE--CCeEe-----echHHHHHHHHhH
Q 020964 88 VVLYQYEACPFCNKVKAFLDYYDIP---YKVVEVNPINKKEIKWSEYKKVPILMV--DGEQL-----VDSSAIIDQLDQK 157 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~vP~L~~--~g~~l-----~eS~~I~~yL~~~ 157 (319)
+..|..+|||-|+.+.-.|.++--. +....|+.. ..-..||+++. +|+.+ .+...+..++.+.
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------~~V~~vPtfv~~~~g~~i~r~~G~~~~~~~~~~~~~ 93 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------DANNEYGVFEFYQNSQLINSLEGCNTSTLVSFIRGW 93 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------cCcccceEEEEEECCEEEeeeeCCCHHHHHHHHHHH
Confidence 4445578899999888887765322 333344422 45567897775 77654 2556777888776
Q ss_pred cC
Q 020964 158 LT 159 (319)
Q Consensus 158 ~~ 159 (319)
+.
T Consensus 94 ~~ 95 (204)
T PTZ00062 94 AQ 95 (204)
T ss_pred cC
Confidence 65
No 254
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=25.25 E-value=1.1e+02 Score=25.42 Aligned_cols=58 Identities=19% Similarity=0.435 Sum_probs=33.5
Q ss_pred EEEeeCCChhHHHHH-H------HHHHCCCCeEEEEcCCCChhhhh---------hcCCccccEEEE---CCeEeec
Q 020964 89 VLYQYEACPFCNKVK-A------FLDYYDIPYKVVEVNPINKKEIK---------WSEYKKVPILMV---DGEQLVD 146 (319)
Q Consensus 89 ~Ly~~~~sp~~~~vr-~------~L~~~gl~~~~~~~~~~~~~~~~---------~~~~~~vP~L~~---~g~~l~e 146 (319)
.-.++.+|.||.... . ..+.++-.|.-+.+|..+.+++. +++.+..|.-+. +|++++.
T Consensus 42 l~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~ 118 (163)
T PF03190_consen 42 LSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFG 118 (163)
T ss_dssp EEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEE
T ss_pred EEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeee
Confidence 336678999998663 2 34455667888888887776532 347888886654 8888875
No 255
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.05 E-value=6.5e+02 Score=24.22 Aligned_cols=94 Identities=9% Similarity=-0.031 Sum_probs=52.8
Q ss_pred CCcEEEEee-CCChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechHHHHHHHHhHcCCCCC
Q 020964 85 PKEVVLYQY-EACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSSAIIDQLDQKLTPKRK 163 (319)
Q Consensus 85 ~~~~~Ly~~-~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~ 163 (319)
+..+-|.+. ....-.+.++-+|++.|+++..+...-..-.+++..+...+=++.-. . ....+.+||+++|+-+-.
T Consensus 172 ~~~VNiiG~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~eei~~~~~A~lniv~~~-~---~~~~~a~~Le~~fGiP~~ 247 (421)
T cd01976 172 PYDVNIIGDYNIGGDAWASRILLEEMGLRVVAQWSGDGTLNEMENAHKAKLNLIHCY-R---SMNYIARMMEEKYGIPWM 247 (421)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEECc-H---HHHHHHHHHHHHhCCcEE
Confidence 356777653 22335567899999999999855433223334555555544433311 0 013589999999986543
Q ss_pred CCCCCChHHHHHHHHHHHh
Q 020964 164 ADSPSGDDEEKKWRGWVDN 182 (319)
Q Consensus 164 ~~~~~~~~~~~~~~~~id~ 182 (319)
...|-.-.....|+.-+..
T Consensus 248 ~~~p~Gi~~t~~~l~~ia~ 266 (421)
T cd01976 248 EYNFFGPTKIAESLRKIAA 266 (421)
T ss_pred ecccCCHHHHHHHHHHHHH
Confidence 2233333444455444443
No 256
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=23.51 E-value=1e+02 Score=24.66 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=16.8
Q ss_pred CCcEEEEeeCCChhHHHHHHHH
Q 020964 85 PKEVVLYQYEACPFCNKVKAFL 106 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L 106 (319)
+..|++|.-..||+|.+....+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHH
Confidence 3468889999999999886555
No 257
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=23.37 E-value=42 Score=26.23 Aligned_cols=60 Identities=12% Similarity=0.036 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHCCCCeEEEEcCCCChh----hhhhcCCccccEEEE---CCeEeechHHHHHHHHhH
Q 020964 98 FCNKVKAFLDYYDIPYKVVEVNPINKK----EIKWSEYKKVPILMV---DGEQLVDSSAIIDQLDQK 157 (319)
Q Consensus 98 ~~~~vr~~L~~~gl~~~~~~~~~~~~~----~~~~~~~~~vP~L~~---~g~~l~eS~~I~~yL~~~ 157 (319)
|...++.+++..|++.+.+.++....- .....=.|.+|.++| -=+..-|...|++||.++
T Consensus 24 fP~LakEl~e~~g~~I~~~r~~~~~~l~~e~~~~~~~sGy~PtViD~lrRC~T~EEALEVInylek~ 90 (128)
T PF09868_consen 24 FPALAKELEEEEGISIEGYRLDEEQVLEEEEEEPDDFSGYNPTVIDYLRRCKTDEEALEVINYLEKR 90 (128)
T ss_pred hHHHHHHHhccCCCceeeeechhhhhhhhccccCCCccCCCChHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 566788999999999887666522110 011122566786665 223444556666666665
No 258
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.87 E-value=3.5e+02 Score=20.60 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=33.0
Q ss_pred EEeeCCChhHHHHHHHHHHC-----CCCeEEEEcCCCChhh-hhhcCCccccEEEE--CCeEee
Q 020964 90 LYQYEACPFCNKVKAFLDYY-----DIPYKVVEVNPINKKE-IKWSEYKKVPILMV--DGEQLV 145 (319)
Q Consensus 90 Ly~~~~sp~~~~vr~~L~~~-----gl~~~~~~~~~~~~~~-~~~~~~~~vP~L~~--~g~~l~ 145 (319)
-|+..||+-|+.+.=.++++ ++-|..++++. ..+ ..-..-..+|+++. +|+.+.
T Consensus 27 dF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~~ 88 (106)
T KOG0907|consen 27 DFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEVD 88 (106)
T ss_pred EEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEEE
Confidence 36667899998775555443 55555566664 222 22346677898886 776543
No 259
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=22.56 E-value=2.6e+02 Score=27.51 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=38.5
Q ss_pred CcEEEEeeCCChhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECC-----eEeech
Q 020964 86 KEVVLYQYEACPFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDG-----EQLVDS 147 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g-----~~l~eS 147 (319)
.-++++..-.|...+.+..+|+...++|.+.-++ +++.+|.|.+++ ..|+|.
T Consensus 61 ~VLVFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~----------~kg~lP~LT~~~kGRy~lII~EN 117 (487)
T PF12062_consen 61 KVLVFVESQYSQLGQDIVAILESNRFKYKVEIAS----------GKGDLPVLTDNDKGRYSLIIFEN 117 (487)
T ss_pred eEEEEEeeccchhhHHHHHHHHhceeeEEEEEcc----------CCCCCCccccCCCCcEEEEEehh
Confidence 3345555557999999999999999999887654 467888888754 356663
No 260
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.28 E-value=3e+02 Score=19.73 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHHCCCCeEEEEc
Q 020964 96 CPFCNKVKAFLDYYDIPYKVVEV 118 (319)
Q Consensus 96 sp~~~~vr~~L~~~gl~~~~~~~ 118 (319)
-+|++|+...|+..|++|+..+-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~PS 37 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMPS 37 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeecC
Confidence 37999999999999999999863
No 261
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=21.81 E-value=1.2e+02 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.634 Sum_probs=17.5
Q ss_pred CCcEEEEeeCCChhHHHHHHHHH
Q 020964 85 PKEVVLYQYEACPFCNKVKAFLD 107 (319)
Q Consensus 85 ~~~~~Ly~~~~sp~~~~vr~~L~ 107 (319)
+..|+.|.-..||+|.+..-.+.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~ 38 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILE 38 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHH
Confidence 44577777788999998866664
No 262
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=21.61 E-value=2.8e+02 Score=24.80 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=26.6
Q ss_pred CcEEEEeeCCChhHHH----HHHHHHHCCCCeEEEEcC
Q 020964 86 KEVVLYQYEACPFCNK----VKAFLDYYDIPYKVVEVN 119 (319)
Q Consensus 86 ~~~~Ly~~~~sp~~~~----vr~~L~~~gl~~~~~~~~ 119 (319)
--+.+|.-..||||.+ ++.+-+..|++..-+.+|
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~D 182 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVD 182 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecC
Confidence 4577777788999985 466667889998888876
No 263
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=21.14 E-value=5.3e+02 Score=24.32 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=58.4
Q ss_pred CCcEEEEeeC-CC-hhHHHHHHHHHHCCCCeEEEEcCCCChhhhhhcCCccccEEEECCeEeechH-HHHHHHHhHcCCC
Q 020964 85 PKEVVLYQYE-AC-PFCNKVKAFLDYYDIPYKVVEVNPINKKEIKWSEYKKVPILMVDGEQLVDSS-AIIDQLDQKLTPK 161 (319)
Q Consensus 85 ~~~~~Ly~~~-~s-p~~~~vr~~L~~~gl~~~~~~~~~~~~~~~~~~~~~~vP~L~~~g~~l~eS~-~I~~yL~~~~~~~ 161 (319)
++.+-|.+.. .. .-..-++-+|+..|+.+..+...-..-.+++..+...+=++.. . +.. .+.++|.++|+-+
T Consensus 144 ~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~-~----~~~~~~a~~L~e~~giP 218 (398)
T PF00148_consen 144 PRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLC-P----EGGPYAAEWLEERFGIP 218 (398)
T ss_dssp SSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESS-C----CHHHHHHHHHHHHHT-E
T ss_pred CCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEec-c----chhhHHHHHHHHHhCCC
Confidence 4578887654 33 4566778889999998777764444444566555554443322 1 123 4899999999865
Q ss_pred CCC-CCCCChHHHHHHHHHHHhhhh
Q 020964 162 RKA-DSPSGDDEEKKWRGWVDNHLV 185 (319)
Q Consensus 162 ~~~-~~~~~~~~~~~~~~~id~~l~ 185 (319)
-.. ..|-......+|+.-+.+.+.
T Consensus 219 ~~~~~~p~G~~~t~~~l~~i~~~lg 243 (398)
T PF00148_consen 219 YLYFPSPYGIEGTDAWLRAIAEALG 243 (398)
T ss_dssp EEEEC-SBSHHHHHHHHHHHHHHHT
T ss_pred eeeccccccHHHHHHHHHHHHHHhC
Confidence 432 344455666666666665544
No 264
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=20.95 E-value=1.3e+02 Score=21.72 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=25.6
Q ss_pred hhHHhhhhhhhhhhccCccccccCCcHHHHHHHHH
Q 020964 273 ADLAVFGVLRPIRYLRSGRDMVEHTRIGEWYTRME 307 (319)
Q Consensus 273 ADi~l~~~L~~l~~~~~~~~~~~~p~L~~w~~r~~ 307 (319)
-|+..|+.+.++........-.+..++..|.+++.
T Consensus 42 ~DvL~~~ll~~L~~~~r~~~k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 42 YDVLTFCLLERLSNPGRSRLKDDGTNISQWLQSLA 76 (77)
T ss_pred HHHHHHHHHHHHhcccchhcCcCCCCHHHHHHHHh
Confidence 59999999998885443222334589999999874
No 265
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=20.75 E-value=3.6e+02 Score=20.60 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=12.0
Q ss_pred EEEEeeCCChhHHHHHHHH
Q 020964 88 VVLYQYEACPFCNKVKAFL 106 (319)
Q Consensus 88 ~~Ly~~~~sp~~~~vr~~L 106 (319)
+..|...+||.|++..-.|
T Consensus 22 ll~Fwa~wC~~C~~~~p~l 40 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKL 40 (131)
T ss_pred EEEEECCCChHHHHHhHHH
Confidence 3345557899998654443
Done!