Query 020965
Match_columns 319
No_of_seqs 223 out of 533
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02097 yccV hemimethylated 100.0 2.3E-35 4.9E-40 242.8 7.8 98 206-307 2-101 (101)
2 PF08755 YccV-like: Hemimethyl 100.0 6E-36 1.3E-40 244.2 2.5 97 206-307 2-100 (100)
3 PRK14129 heat shock protein Hs 99.9 1.7E-25 3.7E-30 184.5 7.5 88 206-298 4-93 (105)
4 COG3785 Uncharacterized conser 99.9 5.8E-24 1.2E-28 176.1 4.2 99 205-308 12-112 (116)
5 COG3880 Modulator of heat shoc 98.2 1.8E-06 3.9E-11 77.6 4.5 44 148-191 128-171 (176)
6 KOG4408 Putative Mg2+ and Co2+ 98.1 4.6E-06 9.9E-11 82.1 5.1 111 204-314 63-233 (386)
7 PF02151 UVR: UvrB/uvrC motif; 97.9 1.7E-05 3.8E-10 54.1 4.4 34 157-190 3-36 (36)
8 COG0556 UvrB Helicase subunit 96.3 0.009 1.9E-07 62.7 6.5 86 107-192 572-660 (663)
9 TIGR00631 uvrb excinuclease AB 94.6 0.044 9.5E-07 58.3 5.0 93 96-188 557-655 (655)
10 PRK05298 excinuclease ABC subu 94.5 0.16 3.4E-06 53.9 8.6 40 153-192 610-649 (652)
11 PRK00558 uvrC excinuclease ABC 93.7 0.099 2.1E-06 55.2 5.4 36 157-192 203-238 (598)
12 PRK12306 uvrC excinuclease ABC 93.1 0.14 3E-06 53.4 5.2 35 158-192 194-228 (519)
13 PRK07883 hypothetical protein; 93.0 0.14 3.1E-06 53.5 5.1 35 158-192 408-442 (557)
14 PRK14666 uvrC excinuclease ABC 92.7 0.16 3.4E-06 54.8 5.1 35 158-192 203-237 (694)
15 PRK14671 uvrC excinuclease ABC 92.7 0.17 3.6E-06 53.8 5.2 35 158-192 217-251 (621)
16 TIGR00194 uvrC excinuclease AB 92.5 0.2 4.3E-06 52.8 5.5 73 158-230 196-271 (574)
17 PRK14667 uvrC excinuclease ABC 92.5 0.17 3.6E-06 53.4 4.9 35 158-192 201-235 (567)
18 PRK14669 uvrC excinuclease ABC 92.2 0.22 4.8E-06 53.0 5.4 35 158-192 205-239 (624)
19 KOG4825 Component of synaptic 92.2 0.5 1.1E-05 49.2 7.7 73 101-193 172-244 (666)
20 PRK14672 uvrC excinuclease ABC 91.9 0.23 5.1E-06 53.5 5.1 35 158-192 207-241 (691)
21 PRK14670 uvrC excinuclease ABC 90.6 0.37 7.9E-06 50.9 5.1 35 158-192 179-213 (574)
22 PF02151 UVR: UvrB/uvrC motif; 89.8 0.77 1.7E-05 31.2 4.4 33 102-134 4-36 (36)
23 PRK14668 uvrC excinuclease ABC 89.0 0.43 9.3E-06 50.4 4.1 35 158-192 201-235 (577)
24 COG0322 UvrC Nuclease subunit 87.2 0.85 1.8E-05 48.4 4.9 73 158-230 204-279 (581)
25 PF00804 Syntaxin: Syntaxin; 74.9 36 0.00078 26.2 9.6 67 116-191 4-72 (103)
26 PF04420 CHD5: CHD5-like prote 72.3 11 0.00023 33.5 6.0 45 150-194 41-85 (161)
27 PRK00409 recombination and DNA 67.9 1.3E+02 0.0029 33.1 14.3 23 207-229 636-658 (782)
28 PF02559 CarD_CdnL_TRCF: CarD- 66.8 5.8 0.00013 31.7 2.9 55 207-282 1-55 (98)
29 KOG0412 Golgi transport comple 66.3 23 0.00049 38.9 7.9 62 120-191 99-163 (773)
30 TIGR01069 mutS2 MutS2 family p 64.3 1.6E+02 0.0035 32.5 14.0 21 209-229 626-646 (771)
31 PF00855 PWWP: PWWP domain; I 62.4 27 0.00058 26.7 5.7 56 208-282 1-59 (86)
32 smart00293 PWWP domain with co 58.8 30 0.00064 25.8 5.3 59 208-281 1-62 (63)
33 PF09465 LBR_tudor: Lamin-B re 56.8 32 0.0007 26.1 5.1 29 204-232 2-34 (55)
34 PRK11020 hypothetical protein; 56.2 32 0.0007 29.8 5.6 45 148-192 4-48 (118)
35 COG3880 Modulator of heat shoc 55.3 20 0.00043 33.0 4.5 33 102-134 138-170 (176)
36 PF10475 DUF2450: Protein of u 52.3 95 0.002 29.7 8.8 80 103-187 70-156 (291)
37 PRK11546 zraP zinc resistance 52.2 82 0.0018 28.1 7.7 22 112-133 43-64 (143)
38 PF15290 Syntaphilin: Golgi-lo 49.9 65 0.0014 32.0 7.3 56 121-192 70-134 (305)
39 PF03961 DUF342: Protein of un 49.5 1.1E+02 0.0023 31.2 9.2 63 122-192 344-406 (451)
40 KOG0412 Golgi transport comple 43.2 74 0.0016 35.2 7.1 75 107-183 135-209 (773)
41 cd05162 PWWP The PWWP domain, 41.1 71 0.0015 24.8 5.1 60 208-283 1-63 (87)
42 PF08317 Spc7: Spc7 kinetochor 40.8 1.9E+02 0.0041 28.3 9.1 25 119-143 177-201 (325)
43 PF11365 DUF3166: Protein of u 38.1 43 0.00093 28.0 3.6 44 160-213 5-48 (96)
44 PRK00558 uvrC excinuclease ABC 37.8 48 0.001 35.4 4.8 40 101-140 203-242 (598)
45 PRK09841 cryptic autophosphory 37.2 5.8E+02 0.013 27.7 13.3 52 94-145 247-300 (726)
46 PRK07883 hypothetical protein; 36.0 62 0.0013 34.2 5.2 37 101-137 407-443 (557)
47 TIGR00002 S16 ribosomal protei 35.7 26 0.00056 28.1 1.9 13 250-262 10-22 (78)
48 PF14235 DUF4337: Domain of un 35.0 2.6E+02 0.0055 25.0 8.2 35 101-135 26-60 (157)
49 cd05835 Dnmt3b_related The PWW 34.4 71 0.0015 25.4 4.2 57 208-283 1-60 (87)
50 CHL00005 rps16 ribosomal prote 33.9 29 0.00062 28.2 1.9 13 250-262 11-23 (82)
51 PF02211 NHase_beta: Nitrile h 33.3 73 0.0016 30.1 4.7 56 202-263 129-197 (222)
52 PF15591 Imm17: Immunity prote 33.3 34 0.00073 27.5 2.1 44 216-281 21-64 (74)
53 smart00787 Spc7 Spc7 kinetocho 33.2 4.2E+02 0.0091 26.2 10.1 22 119-140 172-193 (312)
54 cd05840 SPBC215_ISWI_like The 33.0 93 0.002 25.3 4.7 63 208-283 1-66 (93)
55 PF09340 NuA4: Histone acetylt 32.7 71 0.0015 25.5 3.9 14 221-234 39-52 (80)
56 PF07798 DUF1640: Protein of u 31.7 3.7E+02 0.0081 23.9 10.0 55 114-169 46-100 (177)
57 PF01486 K-box: K-box region; 31.5 2.6E+02 0.0055 22.5 7.1 69 123-191 16-84 (100)
58 PF06637 PV-1: PV-1 protein (P 31.4 2.1E+02 0.0046 29.7 7.9 26 119-144 285-314 (442)
59 PF00886 Ribosomal_S16: Riboso 31.3 24 0.00051 26.9 0.9 13 250-262 4-16 (62)
60 PF06133 DUF964: Protein of un 31.2 2.6E+02 0.0056 22.3 7.0 73 118-192 3-75 (108)
61 cd05834 HDGF_related The PWWP 31.0 1.2E+02 0.0025 24.2 4.9 55 207-283 2-59 (83)
62 PRK00040 rpsP 30S ribosomal pr 30.9 37 0.0008 27.1 2.0 13 250-262 11-23 (75)
63 PRK14525 rpsP 30S ribosomal pr 30.2 35 0.00076 28.1 1.8 13 250-262 12-24 (88)
64 cd05837 MSH6_like The PWWP dom 30.0 1E+02 0.0022 25.6 4.6 65 207-283 2-69 (110)
65 KOG3419 Mitochondrial/chloropl 29.9 34 0.00073 29.4 1.7 13 250-262 12-24 (112)
66 KOG4253 Tryptophan-rich basic 26.9 1.9E+02 0.0041 26.6 6.0 40 156-195 51-90 (175)
67 PRK05298 excinuclease ABC subu 26.6 1E+02 0.0022 33.1 5.0 35 101-135 614-648 (652)
68 PRK00260 cysS cysteinyl-tRNA s 25.9 2.7E+02 0.0058 28.6 7.7 31 154-187 417-447 (463)
69 PF03938 OmpH: Outer membrane 25.7 4.1E+02 0.0089 22.4 13.7 88 102-193 30-120 (158)
70 PF11855 DUF3375: Protein of u 25.7 2.9E+02 0.0064 28.6 8.0 71 113-191 138-208 (478)
71 PRK14524 rpsP 30S ribosomal pr 25.2 52 0.0011 27.4 2.0 13 250-262 11-23 (94)
72 KOG0994 Extracellular matrix g 25.1 2.5E+02 0.0054 33.4 7.7 25 120-144 1420-1444(1758)
73 PF13234 rRNA_proc-arch: rRNA- 25.0 4.7E+02 0.01 24.4 8.7 58 173-233 41-101 (268)
74 PRK13676 hypothetical protein; 24.9 3.9E+02 0.0085 21.9 7.4 73 117-191 5-77 (114)
75 KOG2124 Glycosylphosphatidylin 24.9 3.1E+02 0.0068 31.1 8.3 72 115-187 341-416 (883)
76 PF14197 Cep57_CLD_2: Centroso 23.6 3.3E+02 0.0071 21.2 6.1 20 173-192 45-64 (69)
77 PF12510 Smoothelin: Smootheli 23.5 2.1E+02 0.0045 21.8 4.7 39 149-190 15-53 (54)
78 PRK14522 rpsP 30S ribosomal pr 23.1 55 0.0012 28.3 1.8 14 249-262 11-24 (116)
79 PRK14523 rpsP 30S ribosomal pr 23.1 57 0.0012 29.0 2.0 14 249-262 10-23 (137)
80 PRK14520 rpsP 30S ribosomal pr 23.0 56 0.0012 29.6 1.9 13 250-262 12-24 (155)
81 PF04568 IATP: Mitochondrial A 22.9 1.8E+02 0.0039 24.4 4.8 27 157-191 73-99 (100)
82 PF04508 Pox_A_type_inc: Viral 22.7 89 0.0019 19.9 2.2 15 178-192 4-18 (23)
83 TIGR02894 DNA_bind_RsfA transc 22.5 5.6E+02 0.012 23.5 8.1 45 42-103 48-92 (161)
84 KOG0545 Aryl-hydrocarbon recep 22.5 5E+02 0.011 26.0 8.3 52 133-193 263-314 (329)
85 PF04380 BMFP: Membrane fusoge 22.4 3.9E+02 0.0085 21.0 9.3 17 176-192 58-74 (79)
86 PF12761 End3: Actin cytoskele 22.4 6.1E+02 0.013 23.8 8.6 70 123-192 100-177 (195)
87 PRK14668 uvrC excinuclease ABC 22.3 1.4E+02 0.003 32.0 5.0 38 101-138 200-237 (577)
88 PRK14667 uvrC excinuclease ABC 22.2 1E+02 0.0022 32.9 4.0 40 101-140 200-239 (567)
89 COG0228 RpsP Ribosomal protein 21.9 62 0.0013 26.8 1.8 13 250-262 11-23 (87)
90 cd05836 N_Pac_NP60 The PWWP do 21.4 2E+02 0.0044 22.9 4.7 58 208-283 1-61 (86)
91 PTZ00475 RESA-like protein; Pr 21.2 6.7E+02 0.015 24.9 9.0 79 93-187 16-96 (282)
92 PRK09458 pspB phage shock prot 20.8 1.4E+02 0.0031 24.0 3.6 20 173-192 47-66 (75)
93 PRK10865 protein disaggregatio 20.8 7.2E+02 0.016 27.8 10.2 26 155-180 476-501 (857)
94 PF01237 Oxysterol_BP: Oxyster 20.4 1.6E+02 0.0035 28.8 4.7 33 108-140 289-321 (354)
No 1
>TIGR02097 yccV hemimethylated DNA binding domain. This model describes the small protein from E. coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein. The model also describes a domain in longer eukaryotic proteins.
Probab=100.00 E-value=2.3e-35 Score=242.78 Aligned_cols=98 Identities=37% Similarity=0.588 Sum_probs=90.1
Q ss_pred cccccCceEEEeecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCCCC
Q 020965 206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQPD 285 (319)
Q Consensus 206 vkFrVGQVVrHRryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~p~ 285 (319)
++|+|||+||||+|||+|||+||||+|.++++|+.+|+++.++. ++|||||||+++++.. +.++||||+||+++.++
T Consensus 2 ~kf~IGqvvrHr~~~yrGVI~gwDp~~~~~eeW~~~~~~~~~p~-~~qPfYhvLv~~~~~~-~~~aYVaE~nL~~~~~~- 78 (101)
T TIGR02097 2 AKFRIGQVVRHKLFGYRGVVIDVDPEYSNTEEWLDAIPVEIRPL-RDQPFYHVLAEDDEGL-PYVAYVAEQNLLYDDSD- 78 (101)
T ss_pred ceecCCCEEEecccCCCEEEEeEChhccCChHHHHhhhcccCcc-cCCCceEEEEeCCCCc-ceeEEeehhhcccCCCC-
Confidence 68999999999999999999999999999999999999887665 9999999999986533 28899999999998875
Q ss_pred CccccCCCcc--ccccCCCcccCc
Q 020965 286 MLEISSQSSS--CERSTTGLDMKF 307 (319)
Q Consensus 286 ~~~I~HP~I~--Fe~fdG~rYvP~ 307 (319)
++|.||+++ |+.|++++|.|+
T Consensus 79 -~~i~hP~~~~~F~~~~~~~y~~~ 101 (101)
T TIGR02097 79 -EPIEHPQVDELFDGFDEGLQKPR 101 (101)
T ss_pred -CCCCCCCHHHHHhhhccCcccCC
Confidence 899999999 999999999996
No 2
>PF08755 YccV-like: Hemimethylated DNA-binding protein YccV like; InterPro: IPR011722 This entry describes the small protein from Escherichia coli YccV and its homologs in other Proteobacteria. YccV is now described as a hemimethylated DNA binding protein []. The model entry describes a domain in longer eukaryotic proteins.; PDB: 1VBV_A.
Probab=100.00 E-value=6e-36 Score=244.16 Aligned_cols=97 Identities=39% Similarity=0.621 Sum_probs=50.3
Q ss_pred cccccCceEEEeecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCCCC
Q 020965 206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQPD 285 (319)
Q Consensus 206 vkFrVGQVVrHRryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~p~ 285 (319)
++|+|||||+||+|||+|||+|||+.|.++++|+.+++.+.++. ++||||+||+|+++. +..+||||+||++...
T Consensus 2 ~~f~vGqvv~Hr~~~y~GVIvgwD~~~~~~~~W~~~~~~~~~~~-~~qPfY~vLv~~~~~--~~~~YVaEenL~~~~~-- 76 (100)
T PF08755_consen 2 VKFRVGQVVRHRRYGYRGVIVGWDPECQAPEEWIEQMGVDNLPR-RNQPFYHVLVDDRDS--PPVRYVAEENLEPDST-- 76 (100)
T ss_dssp -SS-TT-EEEETTT--EEEEEEEE-------------------------EEEEEEE-SS----EEEEEEGGGEEE-----
T ss_pred cccccCCEEEEeeeCccEEEECcccccCCCchHHHhcccccccc-CCCCcEEEEEecCCc--cceEEecccccccCCC--
Confidence 68999999999999999999999999999999999999887766 999999999998754 3569999999988766
Q ss_pred CccccCCCcc--ccccCCCcccCc
Q 020965 286 MLEISSQSSS--CERSTTGLDMKF 307 (319)
Q Consensus 286 ~~~I~HP~I~--Fe~fdG~rYvP~ 307 (319)
.++|.||+|+ |++|||++|+||
T Consensus 77 ~~~i~hp~i~~yF~~fd~~~y~p~ 100 (100)
T PF08755_consen 77 PEPINHPEIGRYFKRFDGGRYVPN 100 (100)
T ss_dssp S--TT-HHHHHHHHHHTT------
T ss_pred CCCcCChHHHHHHHhhCCCcCccC
Confidence 4899999999 999999999997
No 3
>PRK14129 heat shock protein HspQ; Provisional
Probab=99.92 E-value=1.7e-25 Score=184.51 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=76.6
Q ss_pred cccccCceEEEeecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCCCC
Q 020965 206 FAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQPD 285 (319)
Q Consensus 206 vkFrVGQVVrHRryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~p~ 285 (319)
-||.|||+||||+|||||||++.||+|+.+++|+..+..+ .+.++|||||||+++.+ +...++||||.||+++++
T Consensus 4 akF~IGQ~VrHrl~~yrGVV~DVDP~fs~~e~w~~~ia~~--~p~kdqPwYHvl~en~~-~~~v~tYVaE~nL~~d~s-- 78 (105)
T PRK14129 4 SKFGIGQQVRHSLLGYLGVVVDIDPEYSLEEPSPDELAVN--DELRAAPWYHVVMEDDD-GQPVHTYLAEAQLSSELQ-- 78 (105)
T ss_pred ccccCCcEEEEeecCCCeEEEeeCCCcCCCchhHHhhccC--CCccCCCceEEEEEcCC-CceEEEEeeecccCCCCC--
Confidence 3799999999999999999999999999999999998754 46789999999997643 333459999999999987
Q ss_pred CccccCCCcc--ccc
Q 020965 286 MLEISSQSSS--CER 298 (319)
Q Consensus 286 ~~~I~HP~I~--Fe~ 298 (319)
.+||.||.++ |+.
T Consensus 79 ~epi~hP~l~elf~~ 93 (105)
T PRK14129 79 DEHPEQPSMDELAES 93 (105)
T ss_pred CCCCCCCCHHHHHHH
Confidence 5999999999 754
No 4
>COG3785 Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=5.8e-24 Score=176.11 Aligned_cols=99 Identities=26% Similarity=0.464 Sum_probs=89.8
Q ss_pred ccccccCceEEEeecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCCC
Q 020965 205 RFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQP 284 (319)
Q Consensus 205 ~vkFrVGQVVrHRryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~p 284 (319)
.-||.|||+|||++|+|+|||++.||++...++|...+.++ .++.++|||||+|+++.+ .+.++||+|.||..+.+
T Consensus 12 ~aKF~IGQvVRHrlfpfrGVV~DvDPeyanteew~~~ip~~-~rp~rdqPfYHllaEnde--~~yvaYvsEqnL~~d~s- 87 (116)
T COG3785 12 AAKFGIGQVVRHRLFPFRGVVFDVDPEYANTEEWPDEIPVN-IRPLRDQPFYHLLAENDE--TEYVAYVSEQNLVSDLS- 87 (116)
T ss_pred HhhcchhhhhhhhhcccceEEEecCcccccCccChhhcccc-ccccccCCceeeeeecCC--ccceeeehhhhcccccc-
Confidence 35799999999999999999999999999999999999765 367899999999998754 67999999999999876
Q ss_pred CCccccCCCcc--ccccCCCcccCch
Q 020965 285 DMLEISSQSSS--CERSTTGLDMKFP 308 (319)
Q Consensus 285 ~~~~I~HP~I~--Fe~fdG~rYvP~p 308 (319)
.+|+.||.++ |.+++.|.|-|..
T Consensus 88 -dep~~~Pqidelf~~~~~g~~~pk~ 112 (116)
T COG3785 88 -DEPPRHPQIDELFDKIRKGLQAPKL 112 (116)
T ss_pred -CCCCCCCCHHHHHHhhhcccccccc
Confidence 5899999999 9999999999965
No 5
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=98.18 E-value=1.8e-06 Score=77.62 Aligned_cols=44 Identities=34% Similarity=0.429 Sum_probs=39.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 148 ~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
....+..+++|..|+..|+++|+.||||+||.+||+|+.|+++.
T Consensus 128 ~~~~i~~~~~I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k~ 171 (176)
T COG3880 128 IGRKINPKRKIIALKEALQDLIEREEFEEAAVIRDQIRALKAKN 171 (176)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34457889999999999999999999999999999999998764
No 6
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=98.06 E-value=4.6e-06 Score=82.08 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=77.3
Q ss_pred cccccccCceEEEeecceeEEEE-cccCccC-----------------CChhhHHHhhhh-------------ccCCCCC
Q 020965 204 ARFAFRLGQKVNHKIFGYRAVIC-GMDPVCC-----------------ESSSWMEIAQVE-------------KLQQGPS 252 (319)
Q Consensus 204 ~~vkFrVGQVVrHRryGYrGVIv-GWD~~c~-----------------a~eeW~~~~~v~-------------~l~~g~~ 252 (319)
..-+|.-||.|+|+.|||+|||+ .|+..-. +.++=..+.... +.-+|..
T Consensus 63 ~~~~~etgqsF~h~~f~yvgvv~~~w~arlk~wd~ln~~~~~aal~ega~e~dl~a~e~s~~~kLp~~~r~~yrev~Gq~ 142 (386)
T KOG4408|consen 63 KTQKYETGQSFLHDTFGYVGVVLFPWAARLKDWDDLNKYLEPAALKEGAREPDLDAVEASIGCKLPDDYRCSYREVKGQT 142 (386)
T ss_pred cCCcccccceeeeeecccceEEEEechHhhhhhhhcccccccchhhccCcccchhhhhhcccccCCCccccchhhcCCeE
Confidence 34589999999999999999987 7776321 111100111000 2237888
Q ss_pred CCceEEEEeecCCCC--------------------------CceeeEeCCCccccCCCCCccccCCCcc-c--cccCCCc
Q 020965 253 QPFYQVLVDVHADPN--------------------------ILVAYVAEENLLASDQPDMLEISSQSSS-C--ERSTTGL 303 (319)
Q Consensus 253 QPFY~VLVd~~d~~~--------------------------~~~~YVAEENLe~~~~p~~~~I~HP~I~-F--e~fdG~r 303 (319)
+.||.||.+.+|+++ +...||+++.|.+.++.+..+++|..++ | .-.++.-
T Consensus 143 l~~yqvLi~~~d~sH~~~ev~~e~~t~~~nf~~r~~L~y~ipgld~v~hedilpyts~e~~~g~heLf~~~pdl~r~~~~ 222 (386)
T KOG4408|consen 143 LTFYQVLIDMRDCSHIRSEVQTEAVTFLGNFDSRQGLKYAIPGLDYVSHEDILPYTSSEAVPGQHELFDQFPDLARDPAA 222 (386)
T ss_pred EeehheeeecccCccccchhhhhhhhhhcCcccccchheecccceeEeeccccccccccccccchhhhhhhhhhhcCccc
Confidence 999999999887643 3679999999999999999999997777 6 4445555
Q ss_pred ccCchHHHHhh
Q 020965 304 DMKFPQIQKMR 314 (319)
Q Consensus 304 YvP~p~~~~~~ 314 (319)
-.|+-..++|+
T Consensus 223 ~~~f~~q~tl~ 233 (386)
T KOG4408|consen 223 IPPFVIQDTLT 233 (386)
T ss_pred CCchhhhHHHH
Confidence 55555555554
No 7
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=97.91 E-value=1.7e-05 Score=54.08 Aligned_cols=34 Identities=35% Similarity=0.556 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHh
Q 020965 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (319)
Q Consensus 157 qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~ 190 (319)
.|..|+..|..|++.++||+||.|||+|..|+++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 5678999999999999999999999999999764
No 8
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.009 Score=62.68 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=57.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHH-HHHHH--HHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHH
Q 020965 107 TRVQCALNMEEYDIAQQLRNKLTEV-EEEIS--RQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQ 183 (319)
Q Consensus 107 t~~q~~l~~~~y~~a~~~r~~~~~v-~~e~~--~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~ 183 (319)
-.+|.+-|.++==+-|-|.+++.++ ..+.. ..+.......++....+.+..|.+|+.+|++|-.+-+||+||.|||+
T Consensus 572 R~iQ~~yN~~hgItP~ti~K~i~d~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~ 651 (663)
T COG0556 572 REIQMAYNEEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKASKMSKKELEKLIKKLEKEMKEAAKNLEFEEAARLRDE 651 (663)
T ss_pred HHHHHHHHHhcCCCchhhhhhhhHhhhhhhhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3566666766665666677777664 22111 11110001023344567778899999999999999999999999999
Q ss_pred HHHHHHhHH
Q 020965 184 ICKLEAESL 192 (319)
Q Consensus 184 Ir~LE~~~~ 192 (319)
|.+|+++..
T Consensus 652 i~~L~~~~~ 660 (663)
T COG0556 652 IKELKEELL 660 (663)
T ss_pred HHHHHHHhc
Confidence 999987653
No 9
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.61 E-value=0.044 Score=58.31 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHH-H-HHHHHH-Hhh-cCC-cch-hHHHHHHHHHHHHHHHHHhh
Q 020965 96 ILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEE-E-ISRQLE-AKR-GLS-SKS-EAQDKALSIIRLRADLQKAI 169 (319)
Q Consensus 96 i~~f~~q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~-e-~~~~~~-~k~-~~s-~~~-ea~d~a~qLl~Lk~~Lq~AI 169 (319)
+...+-..+....+|.+.|.+...+=+-|.+++..+-. . ...... .+. ... .+. ...+....|..|+.+|++|.
T Consensus 557 ~~~ai~~~~~~~~iq~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~M~~aa 636 (655)
T TIGR00631 557 MQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELKEKEDAAKKKKKGEDLSDLSKKELKKLIKQLEKEMKQAA 636 (655)
T ss_pred HHHHHHHHHhHHHHHhhhhhhcCCCCcccCcchHHHhhhhhhcccchhhccccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 44444555567778999999888888888888777422 1 100000 000 000 111 22345556778999999999
Q ss_pred chhhhhHHhHHHHHHHHHH
Q 020965 170 DSENYALAADLRDQICKLE 188 (319)
Q Consensus 170 e~EeyE~AA~LRD~Ir~LE 188 (319)
++.+||+||++||+|+.|+
T Consensus 637 ~~l~FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 637 RNLEFEEAARLRDEILELK 655 (655)
T ss_pred HccCHHHHHHHHHHHHhcC
Confidence 9999999999999999873
No 10
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=94.45 E-value=0.16 Score=53.94 Aligned_cols=40 Identities=30% Similarity=0.378 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 153 d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
.....+..|+.+|++|.+..+||+||.+||+|+.|+..+.
T Consensus 610 ~~~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~~ 649 (652)
T PRK05298 610 ELEKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEELL 649 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677899999999999999999999999999987553
No 11
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=93.75 E-value=0.099 Score=55.18 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 157 qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
-+..|+.+|+.|.++.+||+||.+||+|+.|++-.+
T Consensus 203 ~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~~ 238 (598)
T PRK00558 203 VLKELEEKMEEASENLEFERAARYRDQIQALRRVQE 238 (598)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999986654
No 12
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=93.07 E-value=0.14 Score=53.38 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
+..|+.+|+.|-+..+||+||.+||.|+.|+.-.+
T Consensus 194 ~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~~~~ 228 (519)
T PRK12306 194 IEKLEEEMAEKAKNQQFERALVIRDEINAIENLQE 228 (519)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 44688899999999999999999999999975443
No 13
>PRK07883 hypothetical protein; Validated
Probab=92.96 E-value=0.14 Score=53.49 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
+.+|+.+|+.|-++.+||+||++||+|+.|+.-.+
T Consensus 408 ~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~~ 442 (557)
T PRK07883 408 LAALRARIDRLAAAERFEEAARLRDRLAALLRALA 442 (557)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999975444
No 14
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=92.72 E-value=0.16 Score=54.78 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
+..|+.+|++|-++.+||+||++||.|+.|+.-.+
T Consensus 203 ~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~~~~ 237 (694)
T PRK14666 203 VDALRTEMEAASEALEFERAAVLRDQIRAVERTVE 237 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999976554
No 15
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=92.67 E-value=0.17 Score=53.80 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
+.+|+.+|+.|-++.+||+||++||.|+.|+.-.+
T Consensus 217 ~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~~~~ 251 (621)
T PRK14671 217 IRSLTEEMQRAAAELKFEEAAELKDQIESLKRYAE 251 (621)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999975443
No 16
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=92.52 E-value=0.2 Score=52.82 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHHHHhHHHhhhhcccc---ccccCceEEEeecceeEEEEcccC
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARF---AFRLGQKVNHKIFGYRAVICGMDP 230 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~aasa~~l~~rn~~v---kFrVGQVVrHRryGYrGVIvGWD~ 230 (319)
+.+|+.+|+.|-++.+||+||.+||.|+.|+.-.+..........+..+ ...-|..+.+-.+=-.|.|+|...
T Consensus 196 ~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~~~Q~v~~~~~~d~Dvi~~~~~~~~~~v~v~~vR~G~l~~~~~ 271 (574)
T TIGR00194 196 IKELEQKMEKASENLEFEEAARIRDQIAAVRELNEKQHVSLTDLIDLDIIAVAFDGNVAAIQVFFIRQGKLIGRDQ 271 (574)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCeeecCCCCCceEEEEEEcCCcEEEEEEEEECCEEeccee
Confidence 4468889999999999999999999999997544321111001112222 223344444433333488888864
No 17
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=92.50 E-value=0.17 Score=53.39 Aligned_cols=35 Identities=26% Similarity=0.223 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
+..|+.+|+.|-++.+||+||++||.|+.|+.-.+
T Consensus 201 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~~~ 235 (567)
T PRK14667 201 LPELYDKIEEYSQKLMFEKAAVIRDQILALENLIK 235 (567)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999976544
No 18
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=92.23 E-value=0.22 Score=53.04 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
+..|+.+|+.|-++.+||+||++||.|+.|+.-.+
T Consensus 205 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~~~ 239 (624)
T PRK14669 205 ARSLRARMEAAALEMQFELAAKYRDLITTVEELEE 239 (624)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 44688999999999999999999999999976544
No 19
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=92.22 E-value=0.5 Score=49.16 Aligned_cols=73 Identities=27% Similarity=0.380 Sum_probs=57.9
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHH
Q 020965 101 FQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADL 180 (319)
Q Consensus 101 ~q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~L 180 (319)
.+-.++.++|.|+-.|+|+.|+-+...+.... |. -.+|.++..+.-.||++|+|..|..+
T Consensus 172 iIgaidenKqeAVakEdfdlAKkaklAiaDLk---------Ks-----------geeleelEndKgcAVadEDfdlAkdk 231 (666)
T KOG4825|consen 172 IIGAIDENKQEAVAKEDFDLAKKAKLAIADLK---------KS-----------GEELEELENDKGCAVADEDFDLAKDK 231 (666)
T ss_pred HHHHHHhhHHHHHhhhhhhHHHHHHHHHHHHH---------HH-----------HHHHHHHhhcccccccchhhhHHHHH
Confidence 35578899999999999999987766655532 11 12456778888899999999999999
Q ss_pred HHHHHHHHHhHHH
Q 020965 181 RDQICKLEAESLA 193 (319)
Q Consensus 181 RD~Ir~LE~~~~a 193 (319)
.|+|..|..++.+
T Consensus 232 kdeiealRaeila 244 (666)
T KOG4825|consen 232 KDEIEALRAEILA 244 (666)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877764
No 20
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=91.88 E-value=0.23 Score=53.45 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
+..|+.+|+.|-+..+||+||++||.|+.|+.-.+
T Consensus 207 l~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~~~~ 241 (691)
T PRK14672 207 VARLEKRMKRAVRQEAFEAAARIRDDIQAIRCITH 241 (691)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999986544
No 21
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=90.63 E-value=0.37 Score=50.94 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
+..|+.+|..|-++.+||+||++||.|+.|+.-.+
T Consensus 179 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~~~~ 213 (574)
T PRK14670 179 LSQIEIKMKEAIQKEDFEAAIKLKETKRSLIEISQ 213 (574)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence 44688999999999999999999999999976554
No 22
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=89.77 E-value=0.77 Score=31.21 Aligned_cols=33 Identities=18% Similarity=0.460 Sum_probs=28.6
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 020965 102 QLDLATRVQCALNMEEYDIAQQLRNKLTEVEEE 134 (319)
Q Consensus 102 q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e 134 (319)
+.+|...+..|...++|+-|..||+++..++++
T Consensus 4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 4 IKELEEKMEEAVENEDFEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence 467889999999999999999999999998753
No 23
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=89.02 E-value=0.43 Score=50.39 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
+..|+.+|++|-++.+||+||++||.|+.|+.-.+
T Consensus 201 ~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~~~~ 235 (577)
T PRK14668 201 ADPLRREMEAAAQAQEFERAANLRDRLEAVEAFHG 235 (577)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999976544
No 24
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=87.18 E-value=0.85 Score=48.39 Aligned_cols=73 Identities=21% Similarity=0.191 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHHHH-hHHH--hhhhccccccccCceEEEeecceeEEEEcccC
Q 020965 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA-SATA--LAFENARFAFRLGQKVNHKIFGYRAVICGMDP 230 (319)
Q Consensus 158 Ll~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~aa-sa~~--l~~rn~~vkFrVGQVVrHRryGYrGVIvGWD~ 230 (319)
+..|+.+|++|-+..+||+||.+||.|..|+.=.+.. .... ....--...+.-|....|..+-..|-++|=+.
T Consensus 204 ~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l~~~q~v~~~~~~~~Dv~a~~~~~~~~~v~vf~~R~Gkllg~~~ 279 (581)
T COG0322 204 LQELEEKMEEASENLDFERAARLRDQIKALEKLQEKQAVSLFKLQDLDVIAGAVDGGEACVQVFFVRGGKLLGRRA 279 (581)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccccccCCccchhhheeeecCCeEEEEEEEeecchhcCCcc
Confidence 4578889999999999999999999999996543311 1110 11111223444455556665555577777554
No 25
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=74.95 E-value=36 Score=26.18 Aligned_cols=67 Identities=13% Similarity=0.305 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 116 EEYDIAQQLRNKLTEVEEEISRQLE--AKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 116 ~~y~~a~~~r~~~~~v~~e~~~~~~--~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
+=|+.++.|+..+..|...+.+.+. .+..+++..+ .+...+|..|-.+....+ ..++..|+.|++..
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d-~~~~~el~~l~~~i~~~~--------~~~~~~lk~l~~~~ 72 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQD-SELKRELDELTDEIKQLF--------QKIKKRLKQLSKDN 72 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH-HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-hhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Confidence 3478889999999999888766555 3334333322 345555555555555444 78888888887664
No 26
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=72.26 E-value=11 Score=33.47 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHHHH
Q 020965 150 EAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA 194 (319)
Q Consensus 150 ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~aa 194 (319)
+......|+.+++.++...=..++|.+.|+++-++.+|+++++..
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKL 85 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566788889999988888899999999999999999888743
No 27
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.89 E-value=1.3e+02 Score=33.12 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=21.6
Q ss_pred ccccCceEEEeecceeEEEEccc
Q 020965 207 AFRLGQKVNHKIFGYRAVICGMD 229 (319)
Q Consensus 207 kFrVGQVVrHRryGYrGVIvGWD 229 (319)
.+++|+.|+.+.+|-.|.|+..+
T Consensus 636 ~~~~Gd~V~v~~~~~~g~v~~i~ 658 (782)
T PRK00409 636 ELKVGDEVKYLSLGQKGEVLSIP 658 (782)
T ss_pred CCCCCCEEEEccCCceEEEEEEc
Confidence 49999999999999999999986
No 28
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=66.81 E-value=5.8 Score=31.70 Aligned_cols=55 Identities=24% Similarity=0.327 Sum_probs=36.2
Q ss_pred ccccCceEEEeecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccC
Q 020965 207 AFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASD 282 (319)
Q Consensus 207 kFrVGQVVrHRryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~ 282 (319)
.|++|+.|.|..+| .|+|.|.....-. +..+.||.+-.... ...|||-+++....
T Consensus 1 mf~~GD~VVh~~~G-v~~i~~i~~~~~~---------------~~~~~yy~L~~~~~-----~~i~vPv~~~~~i~ 55 (98)
T PF02559_consen 1 MFKIGDYVVHPNHG-VGRIEGIEEIEFG---------------GEKQEYYVLEYADD-----DTIYVPVDNADKIG 55 (98)
T ss_dssp T--TTSEEEETTTE-EEEEEEEEEEECT---------------TEEEEEEEEEECCC-----EEEEEECCCGGGEE
T ss_pred CCCCCCEEEECCCc-eEEEEEEEEEeeC---------------CeeEEEEEEEECCC-----CEEEEEcCChhhcc
Confidence 48999999999988 4778887653321 22356666555442 38999999976653
No 29
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.27 E-value=23 Score=38.94 Aligned_cols=62 Identities=19% Similarity=0.317 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHH---HHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 120 IAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRA---DLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 120 ~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~---~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
.|..|-+|+.+|+.|..| .++.+-.+.++..|+. ..+.|++.|+||+||..-.++..|-++.
T Consensus 99 lAe~Vs~kVr~lDla~~R----------v~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~ 163 (773)
T KOG0412|consen 99 LAETVSGKVRALDLAQNR----------VNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQAL 163 (773)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence 456666666666554433 2344555555666665 7889999999999999998888884433
No 30
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.30 E-value=1.6e+02 Score=32.48 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=20.1
Q ss_pred ccCceEEEeecceeEEEEccc
Q 020965 209 RLGQKVNHKIFGYRAVICGMD 229 (319)
Q Consensus 209 rVGQVVrHRryGYrGVIvGWD 229 (319)
+||+.|+-+.+|-.|.|+..+
T Consensus 626 ~~Gd~V~v~~~~~~g~v~~i~ 646 (771)
T TIGR01069 626 KIGDKVRIRYFGQKGKIVQIL 646 (771)
T ss_pred CCCCEEEEccCCceEEEEEEc
Confidence 999999999999999999986
No 31
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=62.37 E-value=27 Score=26.66 Aligned_cols=56 Identities=25% Similarity=0.218 Sum_probs=39.9
Q ss_pred cccCceEEEeeccee---EEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccC
Q 020965 208 FRLGQKVNHKIFGYR---AVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASD 282 (319)
Q Consensus 208 FrVGQVVrHRryGYr---GVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~ 282 (319)
|.+|++|--|.-||. |+|+.-+.... ..+....|+|..=+. ...+.|...+|.+..
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~---------------~~~~~~~~~V~Ffg~----~~~~wv~~~~i~~f~ 59 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSK---------------KKRKDGHVLVRFFGD----NDYAWVKPSNIKPFS 59 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTS---------------CSSSSTEEEEEETTT----TEEEEEEGGGEEECC
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccc---------------cCCCCCEEEEEecCC----CCEEEECHHHhhChh
Confidence 789999999999985 99998873222 123456677776432 267999999998775
No 32
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=58.76 E-value=30 Score=25.81 Aligned_cols=59 Identities=19% Similarity=0.231 Sum_probs=40.3
Q ss_pred cccCceEEEeeccee---EEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCcccc
Q 020965 208 FRLGQKVNHKIFGYR---AVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLAS 281 (319)
Q Consensus 208 FrVGQVVrHRryGYr---GVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~ 281 (319)
|++|++|-=|..||. |.|++.+..-.. + ....+....|+|..=+. ...++|..++|.+.
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~-------~----~~~~~~~~~~~V~Ffg~----~~~awv~~~~l~p~ 62 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDN-------I----RKRKRFENLYPVLFFGD----KDTAWISSSKLFPL 62 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChh-------H----hhccCCCCEEEEEEeCC----CCEEEECccceeeC
Confidence 789999999999984 999887753211 0 01233455688886432 24599999999875
No 33
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=56.77 E-value=32 Score=26.14 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=21.2
Q ss_pred cccccccCceEEEeecc----eeEEEEcccCcc
Q 020965 204 ARFAFRLGQKVNHKIFG----YRAVICGMDPVC 232 (319)
Q Consensus 204 ~~vkFrVGQVVrHRryG----YrGVIvGWD~~c 232 (319)
++.+|.+|.+|.-|+=| |.|.|++.|+.-
T Consensus 2 p~~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~ 34 (55)
T PF09465_consen 2 PSRKFAIGEVVMVRWPGSSLYYEGKVLSYDSKS 34 (55)
T ss_dssp SSSSS-SS-EEEEE-TTTS-EEEEEEEEEETTT
T ss_pred CcccccCCCEEEEECCCCCcEEEEEEEEecccC
Confidence 46899999999987665 689999988754
No 34
>PRK11020 hypothetical protein; Provisional
Probab=56.24 E-value=32 Score=29.78 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 148 ~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
|.|-......|..++.+|..|+...+-+.-+++.++|.+|+.++.
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~ 48 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIA 48 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 455566677888899999999999999999999999999987765
No 35
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=55.35 E-value=20 Score=32.98 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=29.3
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 020965 102 QLDLATRVQCALNMEEYDIAQQLRNKLTEVEEE 134 (319)
Q Consensus 102 q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e 134 (319)
+..|..-||-++..|+|+-|..||+.+-..+++
T Consensus 138 I~~L~e~Lq~~i~~EefEeAA~iRDqIr~Lk~k 170 (176)
T COG3880 138 IIALKEALQDLIEREEFEEAAVIRDQIRALKAK 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468899999999999999999999999887644
No 36
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=52.25 E-value=95 Score=29.70 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=49.7
Q ss_pred HHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHhhcC-CcchhHHHHHHHHHHHHHHHHHhhchhhhh
Q 020965 103 LDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISR------QLEAKRGL-SSKSEAQDKALSIIRLRADLQKAIDSENYA 175 (319)
Q Consensus 103 ~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e~~~------~~~~k~~~-s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE 175 (319)
.++...++.|+ .+.+.+|++|..+.+++.+ ...+|+.. ..--+.+..-..+.+....++..++..+|.
T Consensus 70 ~el~~~l~~a~-----~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~ 144 (291)
T PF10475_consen 70 QELQDELEEAL-----VICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYP 144 (291)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 34555555554 4567889999988777533 11122221 122233444455566677999999999999
Q ss_pred HHhHHHHHHHHH
Q 020965 176 LAADLRDQICKL 187 (319)
Q Consensus 176 ~AA~LRD~Ir~L 187 (319)
.|..+-.+.+.+
T Consensus 145 ~Al~li~~~~~~ 156 (291)
T PF10475_consen 145 GALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHH
Confidence 888777766655
No 37
>PRK11546 zraP zinc resistance protein; Provisional
Probab=52.20 E-value=82 Score=28.08 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=15.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH
Q 020965 112 ALNMEEYDIAQQLRNKLTEVEE 133 (319)
Q Consensus 112 ~l~~~~y~~a~~~r~~~~~v~~ 133 (319)
.|..|+..+.|.|+++.+.-..
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~ 64 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTS 64 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888888777433
No 38
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=49.91 E-value=65 Score=31.97 Aligned_cols=56 Identities=27% Similarity=0.407 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHh----hchhhhhHHh-----HHHHHHHHHHHhH
Q 020965 121 AQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKA----IDSENYALAA-----DLRDQICKLEAES 191 (319)
Q Consensus 121 a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~A----Ie~EeyE~AA-----~LRD~Ir~LE~~~ 191 (319)
-.+||.||.+-++.+ .|.-.+|.+||.+|... |++|=....| +-|.+|+.|.+=+
T Consensus 70 iRHLkakLkes~~~l----------------~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvi 133 (305)
T PF15290_consen 70 IRHLKAKLKESENRL----------------HDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVI 133 (305)
T ss_pred HHHHHHHHHHHHHHH----------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888766444 23444666777766654 4333333333 3478888887766
Q ss_pred H
Q 020965 192 L 192 (319)
Q Consensus 192 ~ 192 (319)
+
T Consensus 134 e 134 (305)
T PF15290_consen 134 E 134 (305)
T ss_pred H
Confidence 5
No 39
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.53 E-value=1.1e+02 Score=31.18 Aligned_cols=63 Identities=13% Similarity=0.321 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 122 QQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 122 ~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
+++.+++.++++.+.+....+.......+.......+.+.+.+|.+.+ ..|.+++..|+.+++
T Consensus 344 ~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--------~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 344 EELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEEL--------KELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 344555556655554444433333333344444444444444444444 666667776666555
No 40
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.23 E-value=74 Score=35.19 Aligned_cols=75 Identities=19% Similarity=0.245 Sum_probs=51.6
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHH
Q 020965 107 TRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQ 183 (319)
Q Consensus 107 t~~q~~l~~~~y~~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~ 183 (319)
.+++.||-.|+|+.|...-.+.-...+.++..+.+|..-.+... .+-...|...+++|...+ .+.|-+|++=+|.
T Consensus 135 ~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i-~~~~~~L~~a~e~L~~l~-~~~f~eA~r~~D~ 209 (773)
T KOG0412|consen 135 EGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEI-SDPYETLKEAKERLSKLF-KERFTEAVRKQDL 209 (773)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhh-hhHHHHHHHHHHHHHHHH-HHHHHHHHhcccH
Confidence 36889999999999988888888888888888886665333323 445555555666665554 4566666555553
No 41
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=41.14 E-value=71 Score=24.82 Aligned_cols=60 Identities=25% Similarity=0.224 Sum_probs=41.5
Q ss_pred cccCceEEEeecce---eEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCC
Q 020965 208 FRLGQKVNHKIFGY---RAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQ 283 (319)
Q Consensus 208 FrVGQVVrHRryGY---rGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~ 283 (319)
|++|++|-=|.-|| .|+|++.+..-.. + ........|+|..=+. ...++|...+|.+.+.
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~-------~-----~~~~~~~~~~V~Ffg~----~~~~wv~~~~l~pf~~ 63 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKK-------A-----KKKAKEGKVLVLFFGD----KTFAWVGAERLKPFTE 63 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchh-------h-----hccCCCCEEEEEEeCC----CcEEEeCccceeeccc
Confidence 78999998888887 4888887654211 0 1123345788886432 3679999999988874
No 42
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.84 E-value=1.9e+02 Score=28.26 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 020965 119 DIAQQLRNKLTEVEEEISRQLEAKR 143 (319)
Q Consensus 119 ~~a~~~r~~~~~v~~e~~~~~~~k~ 143 (319)
.+...++++..++++|+...+....
T Consensus 177 ~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 177 ELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777766665433
No 43
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=38.15 E-value=43 Score=28.03 Aligned_cols=44 Identities=30% Similarity=0.327 Sum_probs=31.3
Q ss_pred HHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHHHHhHHHhhhhccccccccCce
Q 020965 160 RLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQK 213 (319)
Q Consensus 160 ~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~aasa~~l~~rn~~vkFrVGQV 213 (319)
.||.+||-+- |+|+.||-.|.+||.+.+. +...-..++|.-|..
T Consensus 5 eLR~qLqFvE-----EEa~LlRRkl~ele~eN~~-----l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 5 ELRRQLQFVE-----EEAELLRRKLSELEDENKQ-----LTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCCC
Confidence 6788888875 6899999999999877662 222344566666654
No 44
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=37.84 E-value=48 Score=35.39 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=36.0
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020965 101 FQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLE 140 (319)
Q Consensus 101 ~q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e~~~~~~ 140 (319)
.+.+|..+.+.|....+||-|+.+|++|..+++-..+|..
T Consensus 203 ~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~~~q~v 242 (598)
T PRK00558 203 VLKELEEKMEEASENLEFERAARYRDQIQALRRVQEKQKV 242 (598)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHhcCee
Confidence 6778999999999999999999999999999877766665
No 45
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=37.16 E-value=5.8e+02 Score=27.74 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=37.9
Q ss_pred chhHHHHHHHHHhHHHHHhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHhhcC
Q 020965 94 EDILFFFFQLDLATRVQCALNMEEYDIA--QQLRNKLTEVEEEISRQLEAKRGL 145 (319)
Q Consensus 94 edi~~f~~q~d~~t~~q~~l~~~~y~~a--~~~r~~~~~v~~e~~~~~~~k~~~ 145 (319)
..+..=|....+..+.+.|.+.-+|.-- ..+++++..+|+++..-|..+...
T Consensus 247 N~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~ 300 (726)
T PRK09841 247 NSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV 300 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455556667888888888888888543 478888888998887777765543
No 46
>PRK07883 hypothetical protein; Validated
Probab=36.00 E-value=62 Score=34.21 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=32.3
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 020965 101 FQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISR 137 (319)
Q Consensus 101 ~q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e~~~ 137 (319)
+...|..+.|.|....+||-|..+|++|..++.-..+
T Consensus 407 ~~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~~~~ 443 (557)
T PRK07883 407 VLAALRARIDRLAAAERFEEAARLRDRLAALLRALAR 443 (557)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999998754433
No 47
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=35.71 E-value=26 Score=28.10 Aligned_cols=13 Identities=31% Similarity=0.743 Sum_probs=10.3
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+++|||+|.|-+
T Consensus 10 ~k~~PfYrIVv~d 22 (78)
T TIGR00002 10 RKKRPFYRIVVAD 22 (78)
T ss_pred CCCCCeEEEEEEe
Confidence 4679999999754
No 48
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=35.03 E-value=2.6e+02 Score=25.01 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=25.7
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 020965 101 FQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEI 135 (319)
Q Consensus 101 ~q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e~ 135 (319)
++.|-.-..-.|.|.=.|=.|+-+|.-++|...+.
T Consensus 26 ~~nea~~~q~~AsdqWa~YQAKsiK~~l~e~~~~~ 60 (157)
T PF14235_consen 26 YKNEAVIAQAEASDQWAYYQAKSIKQHLAELAADL 60 (157)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455566788888889999999999876553
No 49
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=34.41 E-value=71 Score=25.44 Aligned_cols=57 Identities=18% Similarity=0.113 Sum_probs=40.3
Q ss_pred cccCceEEEeecce---eEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCC
Q 020965 208 FRLGQKVNHKIFGY---RAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQ 283 (319)
Q Consensus 208 FrVGQVVrHRryGY---rGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~ 283 (319)
|.||++|-=|.-|| .|.|+.++..... ....+.|+|-.=+. ...++|..++|.+...
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~---------------~~~~~~~~V~fFGs----~~~a~v~~~~l~pf~e 60 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKR---------------PPVVGMRWVTWFGS----GTFSEVSVDKLSPFSE 60 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccc---------------cCCCCeEEEEEeCC----CCEeEECHHHCcChhH
Confidence 78999999888887 4999987654321 12335577775432 3689999999988763
No 50
>CHL00005 rps16 ribosomal protein S16
Probab=33.90 E-value=29 Score=28.20 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=10.4
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+++|||+|.|-+
T Consensus 11 ~kk~P~YrIVvad 23 (82)
T CHL00005 11 RKQQAVYRIVAID 23 (82)
T ss_pred CCCCCeEEEEEEe
Confidence 4679999999754
No 51
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=33.34 E-value=73 Score=30.12 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=29.9
Q ss_pred hccccccccCceEEEe-------------ecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeec
Q 020965 202 ENARFAFRLGQKVNHK-------------IFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (319)
Q Consensus 202 rn~~vkFrVGQVVrHR-------------ryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~ 263 (319)
.....+|+||+.|+-| .-|..|+|+-....+-.++. .. .- .....||+|+|-++..
T Consensus 129 ~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~rg~~G~I~~~~g~~~~pd~---~a--~g-~~~~~~~lY~V~F~~~ 197 (222)
T PF02211_consen 129 VDAPPRFAVGDRVRVRNLPPPGHTRLPRYVRGKTGTIERVHGAFVFPDS---NA--HG-RGEAPQPLYTVRFDAR 197 (222)
T ss_dssp TSSS-SS-TT-EEEE-----SS--SS-GGGTT-EEEEEEEEEEE--HHH---HT--TT-SSTT-EEEEEEEEEHH
T ss_pred CCCCCCCCCCCEEEECCCCCCCcccccHhhCCCeeEEEEEecCCCCcch---hc--cC-CCCCCcceEEEEecch
Confidence 3456799999999853 23558999955554444332 11 11 1222689999999754
No 52
>PF15591 Imm17: Immunity protein 17
Probab=33.32 E-value=34 Score=27.50 Aligned_cols=44 Identities=27% Similarity=0.312 Sum_probs=31.5
Q ss_pred EeecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCcccc
Q 020965 216 HKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLAS 281 (319)
Q Consensus 216 HRryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~ 281 (319)
|+.+|-+|||+|....=... ==|.||+.+- ...-|..+..|.+.
T Consensus 21 ~ei~Gk~GVVlG~SeeD~~~------------------~gY~Vli~d~----e~~~~~ee~~l~~T 64 (74)
T PF15591_consen 21 AEIWGKRGVVLGISEEDGGN------------------FGYSVLIFDM----ECCWYIEEDELEAT 64 (74)
T ss_pred hhhcCceeEEEEEecCCCcE------------------EEEEEEEeee----eeEEEechHHeeec
Confidence 57899999999975422210 1189998854 37889999988765
No 53
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=33.22 E-value=4.2e+02 Score=26.20 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 020965 119 DIAQQLRNKLTEVEEEISRQLE 140 (319)
Q Consensus 119 ~~a~~~r~~~~~v~~e~~~~~~ 140 (319)
++--.++++...+.+|+...+.
T Consensus 172 ~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 172 SIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666655544444
No 54
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=32.99 E-value=93 Score=25.30 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=42.4
Q ss_pred cccCceEEEeeccee---EEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCC
Q 020965 208 FRLGQKVNHKIFGYR---AVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQ 283 (319)
Q Consensus 208 FrVGQVVrHRryGYr---GVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~ 283 (319)
|++|++|-=|.-||. |+|+..+.. +.. + -+....+...-|.|..=.. ...++|...+|.+.+.
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~---p~~----~--l~~~~~~~~~~~~V~FFg~----~~~~Wv~~~~l~pl~~ 66 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEML---PDS----V--LKGKKKKNKRTYPVMFFPD----GDYYWVPNKDLKPLTE 66 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHC---CHH----H--HhcccCCCCCeEEEEEeCC----CcEEEEChhhcccCCH
Confidence 789999999999984 999877632 111 1 0002234456788886432 2689999999988873
No 55
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=32.66 E-value=71 Score=25.50 Aligned_cols=14 Identities=29% Similarity=0.404 Sum_probs=9.5
Q ss_pred eeEEEEcccCccCC
Q 020965 221 YRAVICGMDPVCCE 234 (319)
Q Consensus 221 YrGVIvGWD~~c~a 234 (319)
|-.||.|||--...
T Consensus 39 ~GNiikGfd~y~k~ 52 (80)
T PF09340_consen 39 YGNIIKGFDGYLKS 52 (80)
T ss_pred CCCCeeChhhhhcc
Confidence 45677899886543
No 56
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=31.75 E-value=3.7e+02 Score=23.90 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=26.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhh
Q 020965 114 NMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAI 169 (319)
Q Consensus 114 ~~~~y~~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AI 169 (319)
+.+.=.....++..++++-.|+...++.... .-+.+......++..|+.+|..-|
T Consensus 46 k~d~e~~~~~~~a~~~eLr~el~~~~k~~~~-~lr~~~e~L~~eie~l~~~L~~ei 100 (177)
T PF07798_consen 46 KSDLENQEYLFKAAIAELRSELQNSRKSEFA-ELRSENEKLQREIEKLRQELREEI 100 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345566667777776666544332221 112233344444555555444444
No 57
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=31.46 E-value=2.6e+02 Score=22.53 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 123 QLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 123 ~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
.+...+..+..++..++..-+-..+.+-.-=.-.+|.+|..+|..++..-.-.+...+.++|..|+.+.
T Consensus 16 ~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke 84 (100)
T PF01486_consen 16 ELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKE 84 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333333333333332233467788889999987777777788888888885544
No 58
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=31.41 E-value=2.1e+02 Score=29.69 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHH-Hhhc
Q 020965 119 DIAQQLRNKLTEVEEE---ISRQLE-AKRG 144 (319)
Q Consensus 119 ~~a~~~r~~~~~v~~e---~~~~~~-~k~~ 144 (319)
+.|+.||.++.+|-.| +.+|.. .+.+
T Consensus 285 elar~Lr~~I~~VarENs~LqrQKle~e~~ 314 (442)
T PF06637_consen 285 ELARSLRAGIERVARENSDLQRQKLEAEQG 314 (442)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHHHH
Confidence 5799999999999444 555554 4443
No 59
>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....
Probab=31.28 E-value=24 Score=26.93 Aligned_cols=13 Identities=31% Similarity=0.743 Sum_probs=10.3
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+++|||+|.|-+
T Consensus 4 ~k~~P~YrIVv~d 16 (62)
T PF00886_consen 4 RKKRPFYRIVVAD 16 (62)
T ss_dssp STTEEEEEEEEEE
T ss_pred CCCCCeEEEEEEe
Confidence 3679999999754
No 60
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=31.17 E-value=2.6e+02 Score=22.29 Aligned_cols=73 Identities=26% Similarity=0.311 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 118 YDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 118 y~~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
|+.|.+|-+.|.+.+ |+...+.++......+++...-.+...++..++.+=....+ .+.....++..++.++.
T Consensus 3 ~~~a~eL~~~I~~s~-ey~~~~~a~~~l~~d~e~~~l~~~f~~~q~~~~~~q~~g~~-~~~e~~~~l~~~~~~l~ 75 (108)
T PF06133_consen 3 YDKANELAEAIKESE-EYKRYKAAEEALEADPEAQKLIEEFQKLQQELQNAQMYGKE-PPKEEIEELQELQEELM 75 (108)
T ss_dssp HHHHHHHHHHHHTSH-HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCH-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhhccC-CcHHHHHHHHHHHHHHH
Confidence 555666666665533 23334444433333444444444444444444433222222 22445555555544443
No 61
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=31.00 E-value=1.2e+02 Score=24.15 Aligned_cols=55 Identities=24% Similarity=0.283 Sum_probs=40.3
Q ss_pred ccccCceEEEeeccee---EEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCC
Q 020965 207 AFRLGQKVNHKIFGYR---AVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQ 283 (319)
Q Consensus 207 kFrVGQVVrHRryGYr---GVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~ 283 (319)
.|.+|++|-=|..||. |.|+..+.. .....-|+|..=+. ...++|+..+|.+.+.
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~------------------~~~~~~~~V~FfGt----~~~a~v~~~~l~pf~~ 59 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDW------------------KPPGKKYPVYFFGT----HETAFLKPEDLFPYTE 59 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEeccccc------------------CCCCCEEEEEEeCC----CCEeEECHHHceeccc
Confidence 5999999999999985 888776542 11234588876432 3579999999998874
No 62
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=30.87 E-value=37 Score=27.05 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.4
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+++|||+|.|-+
T Consensus 11 ~k~~P~YrIVv~d 23 (75)
T PRK00040 11 AKKRPFYRIVVAD 23 (75)
T ss_pred CCCCCeEEEEEEe
Confidence 4679999999754
No 63
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=30.21 E-value=35 Score=28.05 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=10.2
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+++|||+|.|-+
T Consensus 12 ~k~~P~YrIVv~d 24 (88)
T PRK14525 12 THKAPFYHVVATD 24 (88)
T ss_pred CCCCCeEEEEEee
Confidence 4679999998744
No 64
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=29.98 E-value=1e+02 Score=25.64 Aligned_cols=65 Identities=22% Similarity=0.368 Sum_probs=41.3
Q ss_pred ccccCceEEEeecce---eEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCC
Q 020965 207 AFRLGQKVNHKIFGY---RAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQ 283 (319)
Q Consensus 207 kFrVGQVVrHRryGY---rGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~ 283 (319)
.|.+|++|-=|.-|| .|+|+. ||.... ... .....+.-.-|+|..=+. .+..++|++.+|.+.+.
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~-~~~~~~---~~~-----~~~~~~~~~~~~V~FFG~---~~~~aWv~~~~l~pf~~ 69 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCS-DPLLGT---YTK-----TKRNKRKPRQYHVQFFGD---NPERAWISEKSLKPFKG 69 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEec-ccccch---hhh-----hhhccCCCCeEEEEEcCC---CCCEEEecHHHccccCC
Confidence 599999998888887 488886 332211 110 011223345688875331 13579999999999975
No 65
>KOG3419 consensus Mitochondrial/chloroplast ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=29.86 E-value=34 Score=29.39 Aligned_cols=13 Identities=31% Similarity=0.738 Sum_probs=10.5
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+|.|||||+|-+
T Consensus 12 cknRPfY~Ivva~ 24 (112)
T KOG3419|consen 12 CKNRPFYRIVVAD 24 (112)
T ss_pred ccCCCeeEEEEee
Confidence 4679999999854
No 66
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=26.89 E-value=1.9e+02 Score=26.63 Aligned_cols=40 Identities=28% Similarity=0.314 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHHHHh
Q 020965 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAAS 195 (319)
Q Consensus 156 ~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~aas 195 (319)
.||.++|++|..-=..++|.+-|++--.|.+|.++.+..+
T Consensus 51 ~ei~dmKqelnavs~qD~fAkwaRlnRKi~kl~~ele~qs 90 (175)
T KOG4253|consen 51 AEIQDMKQELNAVSMQDNFAKWARLNRKINKLDKELETQS 90 (175)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888888788899999999999999977776443
No 67
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=26.59 E-value=1e+02 Score=33.06 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=31.4
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 020965 101 FQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEI 135 (319)
Q Consensus 101 ~q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e~ 135 (319)
.+.+|..+++.|.+..+|+-|+.+|++|..+++.+
T Consensus 614 ~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~ 648 (652)
T PRK05298 614 LIKELEKQMKEAAKNLEFEEAARLRDEIKELKEEL 648 (652)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999988653
No 68
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=25.90 E-value=2.7e+02 Score=28.63 Aligned_cols=31 Identities=26% Similarity=0.535 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHH
Q 020965 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKL 187 (319)
Q Consensus 154 ~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~L 187 (319)
...+|.+.|.+.. +.-+|++|-.|||+|.++
T Consensus 417 ~~~~li~~R~~aR---~~Kdf~~AD~IRd~L~~~ 447 (463)
T PRK00260 417 EIEALIEERQEAR---KAKDFALADAIRDELAAL 447 (463)
T ss_pred HHHHHHHHHHHHH---HccCHHHHHHHHHHHHHC
Confidence 3445555555544 457899999999998754
No 69
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=25.74 E-value=4.1e+02 Score=22.45 Aligned_cols=88 Identities=13% Similarity=0.188 Sum_probs=40.3
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHh
Q 020965 102 QLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLE---AKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178 (319)
Q Consensus 102 q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e~~~~~~---~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA 178 (319)
.-..++.++..|+... +..++++...++++..+.+ .++...|..+......+|.+...+++.....-.=+...
T Consensus 30 ~~~~~k~~~~~l~~~~----~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~ 105 (158)
T PF03938_consen 30 ESPAGKDAQAKLQEKF----KALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQQAQQQLQQ 105 (158)
T ss_dssp HHHHHHTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555543 3333444444444322222 33334555666666667777666666655333333333
Q ss_pred HHHHHHHHHHHhHHH
Q 020965 179 DLRDQICKLEAESLA 193 (319)
Q Consensus 179 ~LRD~Ir~LE~~~~a 193 (319)
.-...+..+..++..
T Consensus 106 ~~~~~~~~i~~~i~~ 120 (158)
T PF03938_consen 106 EEQELLQPIQKKINK 120 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 70
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=25.72 E-value=2.9e+02 Score=28.61 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=48.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 113 LNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 113 l~~~~y~~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
+|..-=..-..|++++.+++.|+.+.+.|.....+.....|...+|..+=.+|=. || +.++|.++.|-.++
T Consensus 138 ~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er~~~i~~la~~L~~-----DF---r~V~~~~r~l~r~l 208 (478)
T PF11855_consen 138 TDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARERARQILQLARELPA-----DF---RRVEDNFRELDRAL 208 (478)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH-----HH---HHHHHHHHHHHHHH
Confidence 3444445567889999999999988888866657777777888777765554432 33 66666666664443
No 71
>PRK14524 rpsP 30S ribosomal protein S16; Provisional
Probab=25.18 E-value=52 Score=27.37 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=10.3
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.++.|||+|.|-|
T Consensus 11 ~KkrPfYrIVvad 23 (94)
T PRK14524 11 KRKQPFYRIVVVD 23 (94)
T ss_pred CCCCCeEEEEEEe
Confidence 4679999999754
No 72
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=25.13 E-value=2.5e+02 Score=33.36 Aligned_cols=25 Identities=44% Similarity=0.466 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 020965 120 IAQQLRNKLTEVEEEISRQLEAKRG 144 (319)
Q Consensus 120 ~a~~~r~~~~~v~~e~~~~~~~k~~ 144 (319)
+.++|+.|+.|+++-+...+++|..
T Consensus 1420 ~~~~l~~~~ae~eq~~~~v~ea~~~ 1444 (1758)
T KOG0994|consen 1420 ADTQLRSKLAEAEQTLSMVREAKLS 1444 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555555444444444443
No 73
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=25.02 E-value=4.7e+02 Score=24.44 Aligned_cols=58 Identities=14% Similarity=0.007 Sum_probs=35.1
Q ss_pred hhhHHhHHHHHHHHHHHhHHHHhHHHhhhhccccccccCceEEEeecce---eEEEEcccCccC
Q 020965 173 NYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGY---RAVICGMDPVCC 233 (319)
Q Consensus 173 eyE~AA~LRD~Ir~LE~~~~aasa~~l~~rn~~vkFrVGQVVrHRryGY---rGVIvGWD~~c~ 233 (319)
+.+.=..++.++..+++++.... ..+.+.-..+..|-+|+-+.-++ -|||+..+....
T Consensus 41 ~v~~y~~l~~~l~~~~~~~~~~i---~~p~~~~~fL~~GRlV~v~~~~~~~~wgvvv~~~~~~~ 101 (268)
T PF13234_consen 41 DVEEYYDLRQELEELRKELRKII---TSPKYCLPFLQPGRLVVVRDGDRDFGWGVVVNFAKKSN 101 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH---CTCCCHHHHS-TTEEEEEEETTCEEEEEEEEEEEE---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---hCcHHHHHhCCCCCEEEEecCCCccceeEEEecccccc
Confidence 34445788888888877765322 23334344689999998763332 488998887653
No 74
>PRK13676 hypothetical protein; Provisional
Probab=24.94 E-value=3.9e+02 Score=21.92 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 117 EYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 117 ~y~~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
=||.|++|-+.|.+.+ |....+.++.......++...-.+....+.+++.+-....+ .....-+++++|..++
T Consensus 5 i~d~A~eL~~aI~~s~-ey~~~~~A~~~l~~d~~a~~li~~F~~~q~~~~~~q~~g~~-~~~e~~~~l~~l~~~i 77 (114)
T PRK13676 5 IYDLANELERALRELP-EYKALKEAKEAVKADEEAKKLFDEFRALQLEIQQKQMTGQE-ITEEEQQKAQELGQKI 77 (114)
T ss_pred HHHHHHHHHHHHHcCH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHH
Confidence 3777777777777744 33444555554444555544444444444444444322221 1233444455554443
No 75
>KOG2124 consensus Glycosylphosphatidylinositol anchor synthesis protein [Signal transduction mechanisms]
Probab=24.89 E-value=3.1e+02 Score=31.15 Aligned_cols=72 Identities=22% Similarity=0.252 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----cchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHH
Q 020965 115 MEEYDIAQQLRNKLTEVEEEISRQLEAKRGLS----SKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKL 187 (319)
Q Consensus 115 ~~~y~~a~~~r~~~~~v~~e~~~~~~~k~~~s----~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~L 187 (319)
.++|++..-.-+.++=+|+-+.+++..+.|.- .+-..++.. ++..-..+.+..|..|+|++|-++-.++.++
T Consensus 341 S~~~~~~a~~~Na~qlL~Q~~~~i~~~~~~~f~~~~~~y~~L~~~-~~~~y~~~i~~li~~~~~s~ai~~~~e~~k~ 416 (883)
T KOG2124|consen 341 SEEYKAEALHLNALQLLEQYLAKIKLHESGSFYKFLPPYKSLSMT-QIEYYLSQIDSLIKKENYSEAIELCKELMKL 416 (883)
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHhhccHHHhcccccccchH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45888888888888888999999999888874 554444443 5556666788889999999998887777655
No 76
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=23.61 E-value=3.3e+02 Score=21.22 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=14.2
Q ss_pred hhhHHhHHHHHHHHHHHhHH
Q 020965 173 NYALAADLRDQICKLEAESL 192 (319)
Q Consensus 173 eyE~AA~LRD~Ir~LE~~~~ 192 (319)
-|+....|++++..|.++++
T Consensus 45 a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 45 AYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677778888887776654
No 77
>PF12510 Smoothelin: Smoothelin cytoskeleton protein; InterPro: IPR022189 This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with PF00307 from PFAM. Smoothelin is a cytoskeletal protein specifically expressed in differentiated smooth muscle cells and has been shown to co-localize with smooth muscle alpha actin.
Probab=23.55 E-value=2.1e+02 Score=21.75 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHh
Q 020965 149 SEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (319)
Q Consensus 149 ~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~ 190 (319)
.+.++.-.....|+.-|..+ .+||+-..||-.|+.|.++
T Consensus 15 ~~~l~~I~De~~L~kmLe~~---~dyeeRr~IRaaiR~lr~~ 53 (54)
T PF12510_consen 15 SEELESIEDEEVLEKMLEAT---TDYEERRRIRAAIRELRKK 53 (54)
T ss_pred HHHHHHhhhHHHHHHHHHHh---ccHHHHHHHHHHHHHHHhc
Confidence 34455555566677777777 5999999999999998543
No 78
>PRK14522 rpsP 30S ribosomal protein S16; Provisional
Probab=23.09 E-value=55 Score=28.35 Aligned_cols=14 Identities=7% Similarity=0.216 Sum_probs=10.7
Q ss_pred CCCCCCceEEEEee
Q 020965 249 QGPSQPFYQVLVDV 262 (319)
Q Consensus 249 ~g~~QPFY~VLVd~ 262 (319)
..+++|||+|.|-+
T Consensus 11 G~KkrPfYrIVVaD 24 (116)
T PRK14522 11 GRRNHVVYRLVLAD 24 (116)
T ss_pred CCCCCCeEEEEEee
Confidence 34679999999754
No 79
>PRK14523 rpsP 30S ribosomal protein S16; Provisional
Probab=23.07 E-value=57 Score=28.99 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=10.7
Q ss_pred CCCCCCceEEEEee
Q 020965 249 QGPSQPFYQVLVDV 262 (319)
Q Consensus 249 ~g~~QPFY~VLVd~ 262 (319)
..+++|||+|.|-+
T Consensus 10 GrKkrPfYRIVVaD 23 (137)
T PRK14523 10 GSKKNPFYHIVVAD 23 (137)
T ss_pred CCCCCCeEEEEEEe
Confidence 34679999999754
No 80
>PRK14520 rpsP 30S ribosomal protein S16; Provisional
Probab=22.98 E-value=56 Score=29.56 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=10.3
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+++|||+|+|-+
T Consensus 12 ~kk~PfYrIVVaD 24 (155)
T PRK14520 12 KIRNPQYRIVVAD 24 (155)
T ss_pred CCCCCeEEEEEee
Confidence 4579999999754
No 81
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.93 E-value=1.8e+02 Score=24.41 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 157 qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
||..||.+|.+-| ..-++.|..||+.+
T Consensus 73 qL~~Lk~kl~~e~--------~~~~k~i~~le~~I 99 (100)
T PF04568_consen 73 QLKKLKEKLKEEI--------EHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHhc
Confidence 5666777666655 45667777776654
No 82
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=22.66 E-value=89 Score=19.93 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHhHH
Q 020965 178 ADLRDQICKLEAESL 192 (319)
Q Consensus 178 A~LRD~Ir~LE~~~~ 192 (319)
-.+|+.|+.||.++.
T Consensus 4 ~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 4 NRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHH
Confidence 368999999998876
No 83
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.52 E-value=5.6e+02 Score=23.46 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=24.3
Q ss_pred hhhhhhhhhhhhhccchhhhhhhhhhhhccccccCCCCCCCCchhhhhccccchhHHHHHHH
Q 020965 42 PCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQL 103 (319)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~edi~~f~~q~ 103 (319)
.|=|+-||.+-+-..-..--+||--+..+ .+..+=+||+.|+=++
T Consensus 48 GFRWNs~VRkqY~~~i~~AKkqRk~~~~~-----------------~~~ltl~~vI~fLq~l 92 (161)
T TIGR02894 48 GFRWNAYVRKQYEEAIELAKKQRKELKRE-----------------AGSLTLQDVISFLQNL 92 (161)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhccccC-----------------cccCCHHHHHHHHHHH
Confidence 36788888877754433222333221111 1456677888887443
No 84
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.46 E-value=5e+02 Score=25.99 Aligned_cols=52 Identities=25% Similarity=0.207 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHHH
Q 020965 133 EEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (319)
Q Consensus 133 ~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~a 193 (319)
|+...-|-+|+-.-.|+++ +.+++|+++.+.+ ...|..++.++|.||.+..+
T Consensus 263 nvKA~frRakAhaa~Wn~~--------eA~~D~~~vL~ld-pslasvVsrElr~le~r~~e 314 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEA--------EAKADLQKVLELD-PSLASVVSRELRLLENRMAE 314 (329)
T ss_pred hHHHHHHHHHHHHhhcCHH--------HHHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHH
Confidence 3445566667665556654 4555666665443 44778889999999776653
No 85
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=22.38 E-value=3.9e+02 Score=21.04 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=13.6
Q ss_pred HHhHHHHHHHHHHHhHH
Q 020965 176 LAADLRDQICKLEAESL 192 (319)
Q Consensus 176 ~AA~LRD~Ir~LE~~~~ 192 (319)
..+.+|.+|..||.++.
T Consensus 58 ~L~~~r~kl~~LEarl~ 74 (79)
T PF04380_consen 58 VLARTREKLEALEARLA 74 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55788999999988775
No 86
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.36 E-value=6.1e+02 Score=23.84 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHH-Hhh-cCCc--chhHH-HHHHHHHHHHH-HHHHhh--chhhhhHHhHHHHHHHHHHHhHH
Q 020965 123 QLRNKLTEVEEEISRQLE-AKR-GLSS--KSEAQ-DKALSIIRLRA-DLQKAI--DSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 123 ~~r~~~~~v~~e~~~~~~-~k~-~~s~--~~ea~-d~a~qLl~Lk~-~Lq~AI--e~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
.|+..|++.|+++.+... .+. ...+ +..-+ ....+|+.-|. +|...- ..-.-.....++|.|..+|++..
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~ 177 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVD 177 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 355556666655433322 222 2222 22222 22234444333 444441 11222355788999999988775
No 87
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=22.33 E-value=1.4e+02 Score=31.96 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=34.5
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 020965 101 FQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQ 138 (319)
Q Consensus 101 ~q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e~~~~ 138 (319)
+...|.++.+.|....+||.|+.+|+++..++.-..+|
T Consensus 200 ~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~~~~~q 237 (577)
T PRK14668 200 LADPLRREMEAAAQAQEFERAANLRDRLEAVEAFHGGG 237 (577)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 66789999999999999999999999999998777666
No 88
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=22.23 E-value=1e+02 Score=32.93 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=35.3
Q ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020965 101 FQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLE 140 (319)
Q Consensus 101 ~q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e~~~~~~ 140 (319)
...+|..+.+.|....+||-|+.+|+++..+++-..+|+.
T Consensus 200 l~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~~~~~q~v 239 (567)
T PRK14667 200 VLPELYDKIEEYSQKLMFEKAAVIRDQILALENLIKGQEV 239 (567)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCee
Confidence 5678999999999999999999999999998877766654
No 89
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=21.90 E-value=62 Score=26.76 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=10.1
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.++.|||+|.|.|
T Consensus 11 ~kk~P~YrIVVaD 23 (87)
T COG0228 11 SKKRPFYRIVVAD 23 (87)
T ss_pred CccCCeEEEEEec
Confidence 4569999999754
No 90
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=21.41 E-value=2e+02 Score=22.93 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=39.9
Q ss_pred cccCceEEEeeccee---EEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCC
Q 020965 208 FRLGQKVNHKIFGYR---AVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQ 283 (319)
Q Consensus 208 FrVGQVVrHRryGYr---GVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~ 283 (319)
|.+|++|-=|.-||. |.|+.... . +. ....+.+-|.|..-.. ...+.|.+.+|.+.+.
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~----------~--~~--~~~~~~~~~~V~FFG~----~~~~wv~~~~l~pF~~ 61 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPK----------D--LK--KPRGKAKCFFVFFFGS----ENHAWIKEENIKPYHE 61 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhh----------h--cc--cccCCCCeEEEEEeCC----CCEEEECHHhCeechh
Confidence 789999999888884 88886311 0 01 1112346788887653 3679999999988864
No 91
>PTZ00475 RESA-like protein; Provisional
Probab=21.24 E-value=6.7e+02 Score=24.87 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=50.6
Q ss_pred cchhHHHHHHHHHhHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhc
Q 020965 93 NEDILFFFFQLDLATRVQCALNME--EYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAID 170 (319)
Q Consensus 93 ~edi~~f~~q~d~~t~~q~~l~~~--~y~~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe 170 (319)
+|.+-.||.++..++=++.+.... -.|+ +.-++++.+...++++.||.|.. +.||..|+..|+
T Consensus 16 Se~l~~YIG~L~ma~~v~l~fe~~~~~edi-~~~~~~i~~~M~~~QkeRE~kLA--------------l~LrdrLq~YVd 80 (282)
T PTZ00475 16 SDMMYEYIENTKVPIFVKLFFGKSIFIEDI-FYYVGMIMKEMMEGQNIREEEVA--------------ELLKDRLDLYID 80 (282)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCCcchhhh-hhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHcC
Confidence 456678999999999888875322 1122 23456666666667776665543 357778888885
Q ss_pred hhhhhHHhHHHHHHHHH
Q 020965 171 SENYALAADLRDQICKL 187 (319)
Q Consensus 171 ~EeyE~AA~LRD~Ir~L 187 (319)
. +=+=.+.+..+++.|
T Consensus 81 g-~~ew~~~~e~Eak~L 96 (282)
T PTZ00475 81 N-EDEWEKLMENEISML 96 (282)
T ss_pred C-hHHHHHHHHHHHHHH
Confidence 4 222346677777777
No 92
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.79 E-value=1.4e+02 Score=23.98 Aligned_cols=20 Identities=30% Similarity=0.155 Sum_probs=17.4
Q ss_pred hhhHHhHHHHHHHHHHHhHH
Q 020965 173 NYALAADLRDQICKLEAESL 192 (319)
Q Consensus 173 eyE~AA~LRD~Ir~LE~~~~ 192 (319)
=++.|.+++++|..||.-+.
T Consensus 47 L~~~A~rm~~RI~tLE~ILD 66 (75)
T PRK09458 47 LTEKAERMRERIQALEAILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 35789999999999998776
No 93
>PRK10865 protein disaggregation chaperone; Provisional
Probab=20.77 E-value=7.2e+02 Score=27.84 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHhHH
Q 020965 155 ALSIIRLRADLQKAIDSENYALAADL 180 (319)
Q Consensus 155 a~qLl~Lk~~Lq~AIe~EeyE~AA~L 180 (319)
..++..++.++.++-...++..++.+
T Consensus 476 ~~ele~l~~kie~a~~~~~~~~~~~~ 501 (857)
T PRK10865 476 KAELEQAKIAIEQARRVGDLARMSEL 501 (857)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHh
Confidence 33444555555555444444444444
No 94
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=20.39 E-value=1.6e+02 Score=28.83 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020965 108 RVQCALNMEEYDIAQQLRNKLTEVEEEISRQLE 140 (319)
Q Consensus 108 ~~q~~l~~~~y~~a~~~r~~~~~v~~e~~~~~~ 140 (319)
-.|+||...+++.|+.-..+|.+...+..+.|+
T Consensus 289 ~d~~al~~gd~~~A~~eK~~lEe~QR~~rk~R~ 321 (354)
T PF01237_consen 289 PDQRALENGDIDKAQEEKKRLEEKQRADRKERK 321 (354)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358899999999999999999885444444443
Done!