Query 020965
Match_columns 319
No_of_seqs 223 out of 533
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 10:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020965.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020965hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vbv_A Hypothetical protein B0 100.0 5.3E-35 1.8E-39 240.5 4.5 99 205-308 3-103 (105)
2 1e52_A Excinuclease ABC subuni 97.6 6.3E-05 2.2E-09 56.7 4.8 38 154-191 22-59 (63)
3 2d7d_A Uvrabc system protein B 95.3 0.0087 3E-07 61.3 3.4 38 153-190 623-660 (661)
4 1c4o_A DNA nucleotide excision 94.2 0.0084 2.9E-07 61.4 0.0 39 153-191 608-646 (664)
5 3he5_B Synzip2; heterodimeric 83.2 4.1 0.00014 28.8 6.4 29 155-191 19-47 (52)
6 1e52_A Excinuclease ABC subuni 80.4 1.6 5.6E-05 32.5 3.7 33 102-134 26-58 (63)
7 3pxg_A Negative regulator of g 80.0 5.5 0.00019 38.7 8.4 46 148-193 393-438 (468)
8 3ghg_A Fibrinogen alpha chain; 68.5 14 0.00049 37.7 8.2 18 118-135 109-126 (562)
9 3lay_A Zinc resistance-associa 62.7 33 0.0011 29.9 8.5 63 111-192 66-130 (175)
10 2pih_A Protein YMCA; regulate 55.5 27 0.00092 29.4 6.5 26 103-128 10-36 (151)
11 2lf0_A Uncharacterized protein 45.4 36 0.0012 28.5 5.5 45 148-192 9-53 (123)
12 4a4z_A Antiviral helicase SKI2 43.8 36 0.0012 36.5 6.7 72 155-229 553-633 (997)
13 1pjr_A PCRA; DNA repair, DNA r 38.2 6.7 0.00023 40.2 0.0 24 206-230 671-694 (724)
14 3r8n_P 30S ribosomal protein S 37.5 17 0.00057 28.4 2.2 13 250-262 11-23 (82)
15 3mlq_E Transcription-repair co 37.3 12 0.00041 28.0 1.3 55 207-282 2-56 (71)
16 4a4f_A SurviVal of motor neuro 36.9 67 0.0023 23.0 5.3 55 203-282 4-62 (64)
17 1s94_A S-syntaxin; three helix 32.9 1.8E+02 0.0062 24.3 8.2 68 117-192 41-109 (180)
18 2oeq_A Protein of unknown func 31.0 1.2E+02 0.0043 24.0 6.5 53 115-168 6-58 (122)
19 3pys_P 30S ribosomal protein S 29.6 15 0.00052 28.7 0.8 13 250-262 11-23 (83)
20 3hht_B NitrIle hydratase beta 28.9 1.2E+02 0.0039 27.7 6.6 55 203-263 137-204 (229)
21 1ed7_A Chitinase A1, (CHBD-CHI 28.0 11 0.00039 25.7 -0.2 29 204-232 4-37 (45)
22 1ez3_A Syntaxin-1A; three heli 27.8 2.1E+02 0.0073 22.1 7.7 67 117-192 10-78 (127)
23 1khc_A DNA cytosine-5 methyltr 26.5 1.6E+02 0.0054 24.7 6.6 60 204-282 8-70 (147)
24 3sja_C Golgi to ER traffic pro 25.4 1.8E+02 0.0063 21.7 6.0 41 153-193 10-50 (65)
25 3fx7_A Putative uncharacterize 25.3 2.6E+02 0.0088 22.3 9.8 72 119-191 13-86 (94)
26 3vlc_E Golgi to ER traffic pro 24.1 1.2E+02 0.0043 24.1 5.2 45 148-192 29-73 (94)
27 3bn0_A 30S ribosomal protein S 22.9 25 0.00087 29.0 0.9 13 250-262 12-24 (112)
28 3qyh_B CO-type nitrIle hydrata 22.8 53 0.0018 29.7 3.1 55 203-263 126-193 (219)
29 2k48_A Nucleoprotein; viral pr 22.5 3.2E+02 0.011 22.3 8.0 20 176-195 83-102 (107)
30 1g6u_A Domain swapped dimer; d 21.7 1.4E+02 0.0048 20.7 4.4 32 160-192 4-37 (48)
31 2l8d_A Lamin-B receptor; DNA b 21.3 71 0.0024 24.1 3.0 53 203-281 5-61 (66)
32 2zzd_A Thiocyanate hydrolase s 21.3 74 0.0025 26.7 3.5 55 203-263 32-99 (126)
33 3sjb_C Golgi to ER traffic pro 21.1 1.3E+02 0.0043 24.1 4.6 41 152-192 26-66 (93)
34 2d7d_A Uvrabc system protein B 21.1 49 0.0017 33.7 2.8 31 102-132 628-658 (661)
35 3pxi_A Negative regulator of g 20.7 1.1E+02 0.0036 31.3 5.2 42 151-192 396-437 (758)
36 3bbn_P Ribosomal protein S16; 20.1 21 0.00072 28.2 -0.1 13 250-262 11-23 (88)
No 1
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=100.00 E-value=5.3e-35 Score=240.45 Aligned_cols=99 Identities=23% Similarity=0.319 Sum_probs=68.3
Q ss_pred ccccccCceEEEeecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccCCC
Q 020965 205 RFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASDQP 284 (319)
Q Consensus 205 ~vkFrVGQVVrHRryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~~p 284 (319)
.++|+|||||+||+|||+|||+||||.|+++++|+..++.+ .++++|||||||++++| +...++||||+||++++++
T Consensus 3 ~~kf~IGqvvrHr~~gyrGVI~d~Dp~~~~~eew~~~~~~~--~~~~~QPfYhVL~e~~~-~~~~~~YVaEenL~~~~s~ 79 (105)
T 1vbv_A 3 ASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVN--DELRAAPWYHVVMEDDN-GLPVHTYLAEAQLSSELQD 79 (105)
T ss_dssp CCSSCTTCEEEETTTCCEEEEEEEECC--------------------CCCEEEEEEECSS-CCEEEEEEEGGGEEECCCS
T ss_pred cceecCCCEEEecccCCCEEEEeECcccCCCHHHHHhcccc--CccCCCCceEEEEeCCC-CceeeeEEcHHhccccCCC
Confidence 57899999999999999999999999999999999999766 46899999999999764 3334599999999999874
Q ss_pred CCccccCCCcc--ccccCCCcccCch
Q 020965 285 DMLEISSQSSS--CERSTTGLDMKFP 308 (319)
Q Consensus 285 ~~~~I~HP~I~--Fe~fdG~rYvP~p 308 (319)
.+|.||+++ |+.|++++|+||-
T Consensus 80 --~~i~HP~i~~~F~~f~~~~y~p~~ 103 (105)
T 1vbv_A 80 --EHPEQPSMDELAQTIRKQLQAPRL 103 (105)
T ss_dssp --CCTTCHHHHHHHHHHTTC------
T ss_pred --CCcCCCCHHHHhHhhcCCcccccc
Confidence 899999999 9999999999973
No 2
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=97.61 E-value=6.3e-05 Score=56.67 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 154 ~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
....|..|+.+|++|.+..+||+||.+||+|+.|+.++
T Consensus 22 ~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~l 59 (63)
T 1e52_A 22 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999998764
No 3
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.29 E-value=0.0087 Score=61.29 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHh
Q 020965 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (319)
Q Consensus 153 d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~ 190 (319)
+....|.+|+.+|++|.++++||+||+|||+|++|+++
T Consensus 623 ~~~~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 623 ERQKVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 45667888999999999999999999999999999754
No 4
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.18 E-value=0.0084 Score=61.43 Aligned_cols=39 Identities=33% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 153 d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
+....|.+|+.+|++|.++++||+||.|||+|++|++++
T Consensus 608 ~~~~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~ 646 (664)
T 1c4o_A 608 DLRERIAELELAMWQAAEALDFERAARLRDEIRALEARL 646 (664)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 345668889999999999999999999999999998775
No 5
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=83.22 E-value=4.1 Score=28.82 Aligned_cols=29 Identities=45% Similarity=0.644 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 155 a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
-.||++..+.|.+.| |-|||+|..||.+.
T Consensus 19 nlqlerdeqnlekii--------anlrdeiarlenev 47 (52)
T 3he5_B 19 NLQLERDEQNLEKII--------ANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhHHHHH--------HHHHHHHHHHHHHH
Confidence 346667777777877 89999999998764
No 6
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=80.40 E-value=1.6 Score=32.53 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 020965 102 QLDLATRVQCALNMEEYDIAQQLRNKLTEVEEE 134 (319)
Q Consensus 102 q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~~e 134 (319)
+.+|.++.+.|....+|+-|..+|++|..++..
T Consensus 26 i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 26 IHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999998765
No 7
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=80.05 E-value=5.5 Score=38.66 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=39.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHHH
Q 020965 148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (319)
Q Consensus 148 ~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~a 193 (319)
..+-.+...+|.++..+...++..++|++|+.|++++.+|+++++.
T Consensus 393 p~~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~ 438 (468)
T 3pxg_A 393 PPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVED 438 (468)
T ss_dssp CSSTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677888999999999999999999999999999988864
No 8
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=68.49 E-value=14 Score=37.74 Aligned_cols=18 Identities=11% Similarity=0.481 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020965 118 YDIAQQLRNKLTEVEEEI 135 (319)
Q Consensus 118 y~~a~~~r~~~~~v~~e~ 135 (319)
++++.+||.+++.++.+|
T Consensus 109 nE~S~ELRRrIqyLKekV 126 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKV 126 (562)
T ss_dssp HHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566666666666555
No 9
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=62.72 E-value=33 Score=29.94 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=40.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhh--HHhHHHHHHHHHH
Q 020965 111 CALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYA--LAADLRDQICKLE 188 (319)
Q Consensus 111 ~~l~~~~y~~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE--~AA~LRD~Ir~LE 188 (319)
..|..||-...+.|+++...-..+ ...+|...+.+|+..+..+.|. ++..+.++|.+|.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~-------------------Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr 126 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSA-------------------LRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLG 126 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 457788887778887776662222 2235667778888888877775 4455667777776
Q ss_pred HhHH
Q 020965 189 AESL 192 (319)
Q Consensus 189 ~~~~ 192 (319)
.++.
T Consensus 127 ~qL~ 130 (175)
T 3lay_A 127 QKLD 130 (175)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 10
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=55.50 E-value=27 Score=29.35 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=10.4
Q ss_pred HHHhHHHHHhhh-hhhHHHHHHHHHHH
Q 020965 103 LDLATRVQCALN-MEEYDIAQQLRNKL 128 (319)
Q Consensus 103 ~d~~t~~q~~l~-~~~y~~a~~~r~~~ 128 (319)
.|.+..|-.+|. .++|..-++..+++
T Consensus 10 ~d~A~eL~~aI~eseeyk~yk~A~~~i 36 (151)
T 2pih_A 10 VQQARNLAKMISETEEVDFFKRAEAQI 36 (151)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 344444444443 23343333333333
No 11
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=45.40 E-value=36 Score=28.50 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 148 ~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
|.|-.....+|..++.+|..|+...+-+.-+++.++|.+|+.++.
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~ 53 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIA 53 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 445556677888899999999999999999999999999988775
No 12
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=43.76 E-value=36 Score=36.52 Aligned_cols=72 Identities=10% Similarity=0.007 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhhch------hhhhHHhHHHHHHHHHHHhHHHHhHHHhhhhccccccccCceEEEee--cce-eEEE
Q 020965 155 ALSIIRLRADLQKAIDS------ENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKI--FGY-RAVI 225 (319)
Q Consensus 155 a~qLl~Lk~~Lq~AIe~------EeyE~AA~LRD~Ir~LE~~~~aasa~~l~~rn~~vkFrVGQVVrHRr--yGY-rGVI 225 (319)
..+|..+..++..+-.. +++++++.+|++|++++.+..... ..+......++.|.||.-+. .++ .|||
T Consensus 553 ~~~l~~l~~~~~~~~~~~c~~c~~~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~l~~gr~v~~~~~~~~~~~~~v 629 (997)
T 4a4z_A 553 EKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAYKEATVNLMQEM---VKSPSILHILKEGRLVAFRDPNDCLKLGFV 629 (997)
T ss_dssp HHHHHHHHHHHHC--------------CHHHHHHHHHHHHHHHHHHH---TTSTTHHHHTCTTEEEEEECTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhhhhccccccccHHHHHHHHHHHHHHHHHHHHHH---hcCHhHHhhCCCCCEEEEecCCCCeeEEEE
Confidence 34445555555432211 478999999999999987764322 22222334689999986543 132 5888
Q ss_pred Eccc
Q 020965 226 CGMD 229 (319)
Q Consensus 226 vGWD 229 (319)
+..+
T Consensus 630 ~~~~ 633 (997)
T 4a4z_A 630 FKVS 633 (997)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 8764
No 13
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=38.16 E-value=6.7 Score=40.16 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=0.0
Q ss_pred cccccCceEEEeecceeEEEEcccC
Q 020965 206 FAFRLGQKVNHKIFGYRAVICGMDP 230 (319)
Q Consensus 206 vkFrVGQVVrHRryGYrGVIvGWD~ 230 (319)
..|.+|+.|+|+.||. |+|++.+.
T Consensus 671 ~~~~~g~~v~h~~fg~-g~v~~~~~ 694 (724)
T 1pjr_A 671 GSWKVGDRANHRKWGI-GTVVSVRG 694 (724)
T ss_dssp -------------------------
T ss_pred cccccCCEeeccCCCC-ceEEEEec
Confidence 3599999999999996 99998764
No 14
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=37.46 E-value=17 Score=28.42 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=10.4
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+++|||+|.|-+
T Consensus 11 ~kk~PfYrIVvad 23 (82)
T 3r8n_P 11 AKKRPFYQVVVAD 23 (82)
T ss_dssp CTTSCCEEEEEEE
T ss_pred CCCCCEEEEEEee
Confidence 4679999999754
No 15
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=37.27 E-value=12 Score=28.00 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=22.5
Q ss_pred ccccCceEEEeecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccccC
Q 020965 207 AFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLASD 282 (319)
Q Consensus 207 kFrVGQVVrHRryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~~~ 282 (319)
.|++|+.|.|.-+| .|.|.|....-- .+..+-||.+-..+ ....|||-+|+....
T Consensus 2 ~l~~GD~VVh~~hG-iG~~~gi~~~~v---------------~g~~~ey~~l~y~~-----~~~l~VPv~~~~~i~ 56 (71)
T 3mlq_E 2 PHMPGDYLIHPEHG-VGQYLGLETREV---------------LGVKRDYLVLRYKG-----EGKLYLPVEQLPLLK 56 (71)
T ss_dssp ---------------CEEEEEEEEEEE---------------TTEEEEEEEEEETT-----TEEEEEESSSCC---
T ss_pred cCCCCCEEEECCCe-eEEEeEEEEEEe---------------CCeeEEEEEEEECC-----CCEEEEEhhhhccee
Confidence 48999999999888 456666543211 12335566666553 258999999998764
No 16
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=36.90 E-value=67 Score=22.99 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=37.1
Q ss_pred ccccccccCceEEEeec--c--eeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCc
Q 020965 203 NARFAFRLGQKVNHKIF--G--YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENL 278 (319)
Q Consensus 203 n~~vkFrVGQVVrHRry--G--YrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENL 278 (319)
++...+++|+.+.=+.. | ||++|.+.++.- .-|.|+..+- +...-|+-.+|
T Consensus 4 ~~~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~---------------------~~~~V~fvdY----Gn~e~V~~~~L 58 (64)
T 4a4f_A 4 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEEN---------------------GTAAITFAGY----GNAEVTPLLNL 58 (64)
T ss_dssp CCSSCCCTTCEEEEECTTTSSEEEEEEEEEETTT---------------------TEEEEEETTT----TEEEEEEGGGE
T ss_pred CcCCCCCCCCEEEEEECCCCCEEEEEEEEEcCCC---------------------CEEEEEEEec----CCEEEEeHHHc
Confidence 55678999999886543 2 889998766311 1267776554 25677888888
Q ss_pred cccC
Q 020965 279 LASD 282 (319)
Q Consensus 279 e~~~ 282 (319)
.+++
T Consensus 59 rpl~ 62 (64)
T 4a4f_A 59 KPVE 62 (64)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 7764
No 17
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=32.92 E-value=1.8e+02 Score=24.28 Aligned_cols=68 Identities=10% Similarity=0.213 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 117 EYDIAQQLRNKLTEVEEEISRQLEA-KRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 117 ~y~~a~~~r~~~~~v~~e~~~~~~~-k~~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
=|+..+.|+..|..+.+-+.+.... +...++... ...++.+|...+. +---.|..++..|+.|++..+
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~-------~~~~k~~le~l~~-~i~~~a~~ik~~Lk~l~~~~~ 109 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQT-------DDQMKEELEELMT-DIKRTANKVRGKLKTIELNIE 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999987776554442 221122111 1134444444442 222366778888888876543
No 18
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=30.98 E-value=1.2e+02 Score=24.04 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHh
Q 020965 115 MEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKA 168 (319)
Q Consensus 115 ~~~y~~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea~d~a~qLl~Lk~~Lq~A 168 (319)
..=||.|.+|-+.|.+.+ |....++++.......++...-.+...++.+++..
T Consensus 6 ~~I~d~A~eL~~~I~~se-Ey~~~k~A~~~l~~D~ea~~li~~F~~~q~~~q~~ 58 (122)
T 2oeq_A 6 EPLHALARQLEQAIRASE-PFQQLKRAYEDVRRDETAYRMFANVRDIQLRLHEK 58 (122)
T ss_dssp CTTHHHHHHHHHHHHHSH-HHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777777754 33344454444344445555444555555555554
No 19
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=29.64 E-value=15 Score=28.70 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=10.2
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+++|||+|.|-+
T Consensus 11 ~kkrPfYrIVvad 23 (83)
T 3pys_P 11 SKHNPHYRIVVTD 23 (83)
T ss_dssp STTCCCCCCEEEE
T ss_pred CCCCCeEEEEEEe
Confidence 4679999998754
No 20
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=28.92 E-value=1.2e+02 Score=27.69 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=34.2
Q ss_pred ccccccccCceEEEe-------------ecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeec
Q 020965 203 NARFAFRLGQKVNHK-------------IFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (319)
Q Consensus 203 n~~vkFrVGQVVrHR-------------ryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~ 263 (319)
....+|+||+.|+=| .-|-.|+|.-....+-.++. .. .. .....||+|+|-.+..
T Consensus 137 ~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~----~a-~g-~~~~p~~lY~V~F~~~ 204 (229)
T 3hht_B 137 SASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYGAHVFPDD----AA-HR-KGENPQYLYRVRFEAE 204 (229)
T ss_dssp SSCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEEEECCHHH----HT-TT-SCCCCEEEEEEEEEHH
T ss_pred CCCCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEecCccCccc----cc-CC-CCCCCceeEEEEecch
Confidence 345689999999842 23458999877554443322 11 11 1224599999999754
No 21
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=28.05 E-value=11 Score=25.69 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=21.4
Q ss_pred cccccccCceEEEeecceeEEEE-----cccCcc
Q 020965 204 ARFAFRLGQKVNHKIFGYRAVIC-----GMDPVC 232 (319)
Q Consensus 204 ~~vkFrVGQVVrHRryGYrGVIv-----GWD~~c 232 (319)
+...|.+|++|.|.-..|+|+.- ||+|.-
T Consensus 4 ~~~~Y~~Gd~Vty~G~~Y~c~q~hts~~~w~P~~ 37 (45)
T 1ed7_A 4 VNTAYTAGQLVTYNGKTYKCLQPHTSLAGWEPSN 37 (45)
T ss_dssp SSEEECTTCCEEETTEEECBCSCEEECTTCSSCC
T ss_pred CCceEcCCCEEEECCeEEEEEecCcCcCCcccCC
Confidence 35679999999997777776653 677744
No 22
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=27.81 E-value=2.1e+02 Score=22.15 Aligned_cols=67 Identities=10% Similarity=0.228 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCcchhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 117 EYDIAQQLRNKLTEVEEEISRQLEAKR--GLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 117 ~y~~a~~~r~~~~~v~~e~~~~~~~k~--~~s~~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
=|+-.+.|+..+..+++.+.+...... .+++..+. .++.+|...+.. -=..|-.+++.|+.|++..+
T Consensus 10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~--------~~~~~l~~l~~~-i~~~a~~ik~~Lk~l~~~~~ 78 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDE--------KTKEELEELMSD-IKKTANKVRSKLKSIEQSIE 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888766544444221 11111111 244445444422 22367889999999976654
No 23
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=26.54 E-value=1.6e+02 Score=24.69 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=42.7
Q ss_pred cccccccCceEEEeecce---eEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCccc
Q 020965 204 ARFAFRLGQKVNHKIFGY---RAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENLLA 280 (319)
Q Consensus 204 ~~vkFrVGQVVrHRryGY---rGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENLe~ 280 (319)
....|.+|++|-=|.-|| .|.|++++..... ......|+|..=+. ...++|...+|.+
T Consensus 8 ~~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~---------------~~~~~~~~V~FFG~----~~~awv~~~~L~p 68 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKR---------------QAMPGMRWVQWFGD----GKFSEISADKLVA 68 (147)
T ss_dssp SSSSCCTTCEEEEEETTTEEEEEEEECGGGTTSC---------------CCCTTEEEEEETTT----CCEEEEEGGGCEE
T ss_pred CCccCcCCCEEEEecCCcCCCCEEeccchhhhcc---------------cCCCCeEEEEEecC----CCEEEEcHHHCcc
Confidence 345799999999998887 5999987653211 01224688886432 3689999999988
Q ss_pred cC
Q 020965 281 SD 282 (319)
Q Consensus 281 ~~ 282 (319)
++
T Consensus 69 ~~ 70 (147)
T 1khc_A 69 LG 70 (147)
T ss_dssp TT
T ss_pred ch
Confidence 75
No 24
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.39 E-value=1.8e+02 Score=21.69 Aligned_cols=41 Identities=17% Similarity=0.078 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHHH
Q 020965 153 DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193 (319)
Q Consensus 153 d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~a 193 (319)
....++.+|+.++...=..++|.+=|+||-++-+|..+++.
T Consensus 10 ~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~ 50 (65)
T 3sja_C 10 AKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINN 50 (65)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888999999999999999777763
No 25
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=25.33 E-value=2.6e+02 Score=22.26 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhH--HHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhH
Q 020965 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEA--QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (319)
Q Consensus 119 ~~a~~~r~~~~~v~~e~~~~~~~k~~~s~~~ea--~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~ 191 (319)
.-|++|..=...+.+++...+-.=...+||... ...+-.+.+|...|+..++ .--+.-+-|+..|+.||..-
T Consensus 13 ~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e-~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 13 EFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDE-AAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHH-hhHHHhHHHHHHHHHhHHHH
Confidence 456777777777777776666533333465443 4556667788888888875 55667788999999997654
No 26
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=24.11 E-value=1.2e+02 Score=24.14 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 148 KSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 148 ~~ea~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
-.+-.....++++|+.++...=..++|.+=|+||-++-+|-.+++
T Consensus 29 ~~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele 73 (94)
T 3vlc_E 29 SKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEIN 73 (94)
T ss_dssp THHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777889999999998899999999999999999977776
No 27
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=22.88 E-value=25 Score=28.96 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=10.2
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+++|||+|.|-+
T Consensus 12 ~KkrPfYrIVVaD 24 (112)
T 3bn0_A 12 RKHHPIYRIVVMD 24 (112)
T ss_dssp ETTEEEEEEEEEE
T ss_pred CCCCCeEEEEEEe
Confidence 3579999999754
No 28
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=22.83 E-value=53 Score=29.70 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=34.5
Q ss_pred ccccccccCceEEEe-------------ecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeec
Q 020965 203 NARFAFRLGQKVNHK-------------IFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (319)
Q Consensus 203 n~~vkFrVGQVVrHR-------------ryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~ 263 (319)
....+|+||+.|+=| .-|-.|+|.-....+-.++. .. .- .....||+|+|-.+..
T Consensus 126 ~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~----~a-~g-~~~~p~~lY~V~F~~~ 193 (219)
T 3qyh_B 126 GARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDT----AA-HG-KGEHPQHVYTVSFTSV 193 (219)
T ss_dssp CSCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEEEECCHHH----HT-TT-SCCCCEEEEEEEEEHH
T ss_pred CCCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEecCccCccc----cc-cC-CCCCCceeEEEEecch
Confidence 345689999999842 23458999866554444321 11 11 1235699999999754
No 29
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.52 E-value=3.2e+02 Score=22.31 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=14.4
Q ss_pred HHhHHHHHHHHHHHhHHHHh
Q 020965 176 LAADLRDQICKLEAESLAAS 195 (319)
Q Consensus 176 ~AA~LRD~Ir~LE~~~~aas 195 (319)
....|+++|..|++++..++
T Consensus 83 ~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 83 AVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44678888888888776444
No 30
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.71 E-value=1.4e+02 Score=20.66 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=20.5
Q ss_pred HHHHHHHHhhchhhh--hHHhHHHHHHHHHHHhHH
Q 020965 160 RLRADLQKAIDSENY--ALAADLRDQICKLEAESL 192 (319)
Q Consensus 160 ~Lk~~Lq~AIe~Eey--E~AA~LRD~Ir~LE~~~~ 192 (319)
.|+.+||. ...|.| |+-|.|..++..||+++.
T Consensus 4 alkselqa-lkkegfspeelaaleselqalekkla 37 (48)
T 1g6u_A 4 ALKSELQA-LKKEGFSPEELAALESELQALEKKLA 37 (48)
T ss_dssp HHHHHHHH-HHHTTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34555543 344553 466778888888888765
No 31
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=21.34 E-value=71 Score=24.10 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=37.5
Q ss_pred ccccccccCceEEEeecc----eeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeecCCCCCceeeEeCCCc
Q 020965 203 NARFAFRLGQKVNHKIFG----YRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVHADPNILVAYVAEENL 278 (319)
Q Consensus 203 n~~vkFrVGQVVrHRryG----YrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~d~~~~~~~YVAEENL 278 (319)
.+.++|.+|+.|.-|+-| |.+-|++.| . ..|-|.|+..++ ...=+.+.+|
T Consensus 5 mp~~~~~vgd~VmaRW~Gd~~yYparI~Si~---s------------------~~~~Y~V~fKdg-----T~e~L~~kDI 58 (66)
T 2l8d_A 5 MPNRKYADGEVVMGRWPGSVLYYEVQVTSYD---D------------------ASHLYTVKYKDG-----TELALKESDI 58 (66)
T ss_dssp CSSSSSCSSCEEEEECTTSSCEEEEEEEEEE---T------------------TTTEEEEEETTS-----CEEEEEGGGE
T ss_pred CCceEeecCCEEEEEcCCCccceEEEEEEec---c------------------CCceEEEEecCC-----CEEeechhcc
Confidence 457799999999999877 788888887 1 135689998653 3344555555
Q ss_pred ccc
Q 020965 279 LAS 281 (319)
Q Consensus 279 e~~ 281 (319)
.+.
T Consensus 59 kp~ 61 (66)
T 2l8d_A 59 RLQ 61 (66)
T ss_dssp ECS
T ss_pred ccc
Confidence 544
No 32
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=21.30 E-value=74 Score=26.65 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=34.5
Q ss_pred ccccccccCceEEEe-------------ecceeEEEEcccCccCCChhhHHHhhhhccCCCCCCCceEEEEeec
Q 020965 203 NARFAFRLGQKVNHK-------------IFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQVLVDVH 263 (319)
Q Consensus 203 n~~vkFrVGQVVrHR-------------ryGYrGVIvGWD~~c~a~eeW~~~~~v~~l~~g~~QPFY~VLVd~~ 263 (319)
....+|+||+.|+=| .-|..|+|.-.-..+--++. .. .- .....||+|+|-.+..
T Consensus 32 ~~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G~~v~Pd~----~A-~G-~ge~p~~lY~VrF~~~ 99 (126)
T 2zzd_A 32 AGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAED----EA-FG-NEENVEWFYSIVFAQK 99 (126)
T ss_dssp TCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEEEECCHHH----HT-TT-CCSCCEEEEEEEEEHH
T ss_pred CCCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEecccCCcch----hc-cC-CCCCcceeEEEEecch
Confidence 445689999999843 23458999865544443322 11 11 1335699999999754
No 33
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=21.13 E-value=1.3e+02 Score=24.09 Aligned_cols=41 Identities=17% Similarity=0.067 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 152 ~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
.....++.+|+.++...=..++|.+=|+||-++.+|-.+++
T Consensus 26 ~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele 66 (93)
T 3sjb_C 26 LAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEIN 66 (93)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888888888999999999999999977766
No 34
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=21.06 E-value=49 Score=33.65 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=25.0
Q ss_pred HHHHhHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 020965 102 QLDLATRVQCALNMEEYDIAQQLRNKLTEVE 132 (319)
Q Consensus 102 q~d~~t~~q~~l~~~~y~~a~~~r~~~~~v~ 132 (319)
+.+|.++++.|....+|+-|.++|++|..++
T Consensus 628 i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~ 658 (661)
T 2d7d_A 628 VEQMEHEMKEAAKALDFERAAELRDLLLELK 658 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999998865
No 35
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=20.71 E-value=1.1e+02 Score=31.27 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhhhHHhHHHHHHHHHHHhHH
Q 020965 151 AQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL 192 (319)
Q Consensus 151 a~d~a~qLl~Lk~~Lq~AIe~EeyE~AA~LRD~Ir~LE~~~~ 192 (319)
..+...++.+++.+...++..++|+.++.+++++..++++++
T Consensus 396 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 437 (758)
T 3pxi_A 396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVE 437 (758)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 345556778888899999999999999999999999977765
No 36
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.06 E-value=21 Score=28.19 Aligned_cols=13 Identities=8% Similarity=0.209 Sum_probs=10.1
Q ss_pred CCCCCceEEEEee
Q 020965 250 GPSQPFYQVLVDV 262 (319)
Q Consensus 250 g~~QPFY~VLVd~ 262 (319)
.+++|||+|.|-+
T Consensus 11 ~KkrPfYrIVvad 23 (88)
T 3bbn_P 11 RKQRAVYRIVAID 23 (88)
T ss_dssp CTTCCCCCCCCEE
T ss_pred CCCCCeEEEEEEe
Confidence 4669999999743
Done!