BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020966
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/293 (60%), Positives = 215/293 (73%), Gaps = 1/293 (0%)
Query: 28 LSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATF 87
LS FYAT CPN + + AV ++ R AS+LRL FHDCFV GCD SVLLDDT+ F
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 88 TGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVPL 147
TGEK AGPN NS RGFEVID IK+++E+ C VSCADILAVAARD V LGG +W V L
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 148 GRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRN 207
GRRD+ TAS S+ANS +P P +L+ LIS F+ KG T +++ LSG H IG A+C AFR
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 208 RIYNDTNIDPAFATTRRTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNRRGLLHSDQE 266
RIYN++NIDP +A + + CP+ GGD NL+P D TPN+FDN+YY NL N++GLLHSDQ+
Sbjct: 182 RIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQQ 241
Query: 267 LFNGGSQDATVRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRNCRVVN 319
LFNG S D+ V YS N A+F DF AM+KMGN+SPLTGT+G+IR NCR N
Sbjct: 242 LFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 300 bits (768), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 154/303 (50%), Positives = 198/303 (65%), Gaps = 10/303 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+ TFY+ +CPN I R + +A+ R AS++RL FHDCFVNGCD S+LLDDT +
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
EKNAGPN NSARGF V+D IKT LE AC VSC+D+LA+A+ V+L GGP+WTV
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFR 206
LGRRD+ TA+ + ANS IP P SL+ + F+A GL D+ LSG H G ARC F
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFN 181
Query: 207 NRIYNDT---NIDPAFATTRRTT----CPATGGDPNLAPLD-QTPNRFDNSYYQNLVNRR 258
NR++N + N DP +T +T CP G + LD TP+ FDN+Y+ NL +
Sbjct: 182 NRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSND 241
Query: 259 GLLHSDQELFN--GGSQDATVRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRNCR 316
GLL SDQELF+ G S A V +++N F + FA +M+ MGNISPLTG+NGEIR +C+
Sbjct: 242 GLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCK 301
Query: 317 VVN 319
VN
Sbjct: 302 KVN 304
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 280 bits (716), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 152/305 (49%), Positives = 189/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL FHDCFVNGCD S+LLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +PGP +L L F GL + D+ LSGGH G +C
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 315 CRVVN 319
CRVVN
Sbjct: 302 CRVVN 306
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/305 (49%), Positives = 189/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL FHDCFVNGCD S+LLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ LSGGH G +C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 315 CRVVN 319
CRVVN
Sbjct: 302 CRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/305 (49%), Positives = 189/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL FHDCFVNGCD S+LLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ LSGGH G +C
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L +D +TP FDN YY NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQ 241
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 315 CRVVN 319
CRVVN
Sbjct: 302 CRVVN 306
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/305 (49%), Positives = 188/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL FHDCFVNGCD S+LLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ LSGGH G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 315 CRVVN 319
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/305 (49%), Positives = 189/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL FHDCFVNGCD S+LLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ LSGGH+ G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 315 CRVVN 319
CRVVN
Sbjct: 301 CRVVN 305
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/302 (48%), Positives = 191/302 (63%), Gaps = 10/302 (3%)
Query: 28 LSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATF 87
L+ TFYA +CPN + R + +A R AS++RL FHDCFV GCD S+LLD++ +
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 88 TGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVPL 147
EKNAGPN NSARGF V+D IKT LE AC VSC D+LA+A++ V+L GGP+WTV L
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 148 GRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRN 207
GRRD TA+Q+ ANS IP P+ L+ + S F+A GL D+ LSG H G A C F N
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 208 RIYN---DTNIDP----AFATTRRTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNRRG 259
R++N N DP +T + CP G LD TP+ FDN+Y+ NL + G
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNG 243
Query: 260 LLHSDQELFN--GGSQDATVRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRNCRV 317
LL SDQELF+ G + A V +++N F + FA +M+ MGNISPLTG++GEIR +C+
Sbjct: 244 LLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKK 303
Query: 318 VN 319
N
Sbjct: 304 TN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 278 bits (710), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/305 (49%), Positives = 188/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL FHDCFVNGCD S+LLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ LSGGH G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 315 CRVVN 319
CRVVN
Sbjct: 301 CRVVN 305
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 278 bits (710), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/305 (49%), Positives = 188/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL FHDCFVNGCD S+LLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ LSGGH G +C
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 315 CRVVN 319
CRVVN
Sbjct: 302 CRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 278 bits (710), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 151/305 (49%), Positives = 188/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL FHDCFVNGCD S+LLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ LSGGH G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 315 CRVVN 319
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 278 bits (710), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 151/305 (49%), Positives = 188/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL FHDCFVNGCD S+LLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ LSGGH G +C
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 315 CRVVN 319
CRVVN
Sbjct: 302 CRVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 276 bits (705), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/305 (49%), Positives = 187/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL FHDCFVNGCD S+LLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ L GGH G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 315 CRVVN 319
CRVVN
Sbjct: 301 CRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/305 (49%), Positives = 187/305 (61%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASILRL F DCFVNGCD S+LLD+T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ LSGGH G +C
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 315 CRVVN 319
CRVVN
Sbjct: 302 CRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 186/305 (60%), Gaps = 12/305 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY SCPN I RD + + PR AASIL L F DCFVNGCD S+LLD+T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
F EK+A N NSARGF VID +K +E+AC TVSCAD+L +AA+ V L GGP+W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLT-AQDMTVLSGGHAIGFARCAAF 205
LGRRD+ A AN+ +P P +L L F GL + D+ LSGGH G +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 206 RNRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNR 257
+R+YN +N DP TT R CP G L D +TP FDN YY NL +
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 258 RGLLHSDQELFNGGSQDAT---VRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRN 314
+GL+ SDQELF+ + T VR ++ + +F F AM +MGNI+PLTGT G+IR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 315 CRVVN 319
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 272 bits (695), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/306 (48%), Positives = 194/306 (63%), Gaps = 20/306 (6%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QLSP YA SCPN +I R ++ A+ + R AAS++RL FHDCFVNGCD S+LLD +
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS 60
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
EK A PN NSARGFEVID IK +E AC VSCADIL +AARD V L GGP W V
Sbjct: 61 ---EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFR 206
LGR+D A+Q++AN+ +P P L +I+ F A L D+ LSG H G A+CA F
Sbjct: 118 LGRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFS 176
Query: 207 NRIYN-------DTNIDPAFATTRRTTCPATGGDPNL-APLDQ-TPNRFDNSYYQNLVNR 257
NR++N D ++ + + +T CP GG+ N+ APLD+ T + FDN+Y++NL+
Sbjct: 177 NRLFNFTGAGNPDATLETSLLSNLQTVCP-LGGNSNITAPLDRSTTDTFDNNYFKNLLEG 235
Query: 258 RGLLHSDQELFNG----GSQDATVRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRR 313
+GLL SDQ LF+ + V YS + + F RDF AM++MGNIS G +GE+R
Sbjct: 236 KGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEVRT 293
Query: 314 NCRVVN 319
NCRV+N
Sbjct: 294 NCRVIN 299
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 260 bits (664), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 149/303 (49%), Positives = 186/303 (61%), Gaps = 10/303 (3%)
Query: 27 QLSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTAT 86
QL+PTFY +CPN I + A PR AS++RL FHDCFV GCDGSVLL++T T
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 87 FTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVP 146
E++A PN NS RG +V++ IKT +E +C TVSCADILA+AA L GGP W VP
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFR 206
LGRRD+ TA+++ AN +P P +L L + FA +GL D+ LSGGH G ARC+ F
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFI 180
Query: 207 NRIYNDTNI---DPAFATTR----RTTCPATGGDPNLAPLD-QTPNRFDNSYYQNLVNRR 258
NR+YN +N DP TT R CP NL LD TP++FDN YY NL+
Sbjct: 181 NRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLN 240
Query: 259 GLLHSDQELFN--GGSQDATVRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRNCR 316
GLL SDQELF+ G V +S+N +F +F +M+KMGNI LTG GEIR C
Sbjct: 241 GLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCN 300
Query: 317 VVN 319
VN
Sbjct: 301 FVN 303
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 146/298 (48%), Positives = 176/298 (59%), Gaps = 10/298 (3%)
Query: 32 FYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTGEK 91
FY TSCP + + + + A A ++R+ FHDCFV GCD SVLLD TA T EK
Sbjct: 6 FYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEK 65
Query: 92 NAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVPLGRRD 151
+A PN S RGFEVI A K+ +EAAC TVSCADILA AARD L G T+ VP GRRD
Sbjct: 66 DAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRD 125
Query: 152 ARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYN 211
+ S AN+QIP P + LI+ FA K LTA +M LSG H+IG A C++F NR+YN
Sbjct: 126 GTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYN 185
Query: 212 -------DTNIDPAFATTRRTTCPA--TGGDPNLAPLD-QTPNRFDNSYYQNLVNRRGLL 261
D + P++A R TCPA T P LD TP+ DN YY + GLL
Sbjct: 186 FNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQLTLGLL 245
Query: 262 HSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRNCRVVN 319
SDQ L + A V+ + N ++A FA AMVKMG I LTGT GEIR NC VVN
Sbjct: 246 TSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 237 bits (604), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 136/299 (45%), Positives = 181/299 (60%), Gaps = 9/299 (3%)
Query: 28 LSPTFYATSCPNFQRIARDEMTKAVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATF 87
LS FY +CP + I R+ + +AV + AA +LRL FHDCFV GCD SVLLD +AT
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 88 TGEKNAGPN---RNSARGFEVIDAIKTRLEAACN-ATVSCADILAVAARDGVALLGGPTW 143
GE+ A PN R SA F+ ++ I+ RLE C A VSC+DILA+AARD V + GGP +
Sbjct: 69 PGEQQAPPNLTLRPSA--FKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDY 126
Query: 144 TVPLGRRDART-ASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARC 202
VPLGRRD+R+ AS S +PGPSS++ +L+++ GL A D+ +SGGH IG A C
Sbjct: 127 RVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHC 186
Query: 203 AAFRNRIYN--DTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRGL 260
++F +R++ D I P F + + TCPA G D +TPN FDN YY +LVNR GL
Sbjct: 187 SSFEDRLFPRPDPTISPTFLSRLKRTCPAKGTDRRTVLDVRTPNVFDNKYYIDLVNREGL 246
Query: 261 LHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKMGNISPLTGTNGEIRRNCRVVN 319
SDQ+LF V ++ + F F ++ KMG + T GE+RRNC V N
Sbjct: 247 FVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSVRN 305
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 103/257 (40%), Gaps = 40/257 (15%)
Query: 62 ILRLFFHDCFV-----------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIK 110
++RL +HD G +GS+ F E G N ++ IK
Sbjct: 28 MVRLGWHDAGTYNKNIEEWPQRGGANGSL------RFDVELKHGANAGLVNALNLLKPIK 81
Query: 111 TRLEAACNATVSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIP--GPS 168
+ + V+ AD+ +A+ + GGP + GR D Q ++P GP
Sbjct: 82 DKY-----SGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPP 136
Query: 169 SSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCP 228
S L +F GL +++ LSG H +G R+R P T+
Sbjct: 137 SPAQHLRDVFYRMGLNDKEIVALSGAHTLG-------RSRPDRSGWGKPETKYTKDGPG- 188
Query: 229 ATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG----LLHSDQELFNGGSQDATVRGYSTNP 284
A GG A +FDNSY++++ RR +L +D LF S Y+ +P
Sbjct: 189 APGGQSWTAQW----LKFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADP 244
Query: 285 ASFARDFAAAMVKMGNI 301
+F +D+A A K+ N+
Sbjct: 245 EAFFKDYAEAHAKLSNL 261
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 107/286 (37%), Gaps = 62/286 (21%)
Query: 33 YATSCPNFQRIARDEMTK--AVNRQPRNAASILRLFFHDCFVNGCDGSVLLDDTATFTG- 89
Y T P++Q+ K + + A ILRL +H G+ D+ T TG
Sbjct: 4 YPTVSPDYQKAIEKAKRKLRGFIAEKKCAPLILRLAWHSA------GTF---DSKTKTGG 54
Query: 90 ---------EKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGG 140
E G N +++ IK + VS AD +A V + GG
Sbjct: 55 PFGTIKHQAELAHGANNGLDIAVRLLEPIKEQF-----PIVSYADFYQLAGVVAVEITGG 109
Query: 141 PTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA-AKGLTAQDMTVLSGGHAIGF 199
P GR D + ++P + L +F A GL+ QD+ LSGGH IG
Sbjct: 110 PEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIG- 165
Query: 200 ARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLV--NR 257
AA + R +G + P P FDNSY+ L+ +
Sbjct: 166 ---AAHKER---------------------SGFE---GPWTSNPLIFDNSYFTELLTGEK 198
Query: 258 RGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKMGNI 301
GLL SD+ L V Y+ + F D+A A +K+ +
Sbjct: 199 DGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG AA + R +G + P
Sbjct: 159 AMGLTDQDIVALSGGHTIG----AAHKER---------------------SGFE---GPW 190
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 191 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 250
Query: 296 VKMGNI 301
K+ +
Sbjct: 251 QKLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG AA + R +G + P
Sbjct: 159 AMGLTDQDIVALSGGHTIG----AAHKER---------------------SGFE---GPW 190
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 191 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 250
Query: 296 VKMGNI 301
K+ +
Sbjct: 251 QKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG AA + R +G + P
Sbjct: 159 AMGLTDQDIVALSGGHTIG----AAHKER---------------------SGFE---GPW 190
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 191 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 250
Query: 296 VKMGNI 301
K+ +
Sbjct: 251 QKLSEL 256
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG AA + R +G + P
Sbjct: 159 AMGLTDQDIVALSGGHTIG----AAHKER---------------------SGFE---GPW 190
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 191 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 250
Query: 296 VKMGNI 301
K+ +
Sbjct: 251 QKLSEL 256
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG AA + R +G + P
Sbjct: 159 AMGLTDQDIVALSGGHTIG----AAHKER---------------------SGFE---GPW 190
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 191 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 250
Query: 296 VKMGNI 301
K+ +
Sbjct: 251 QKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG AA + R +G + P
Sbjct: 147 AMGLTDQDIVALSGGHTIG----AAHKER---------------------SGFE---GPW 178
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 179 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 238
Query: 296 VKMGNI 301
K+ +
Sbjct: 239 QKLSEL 244
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG AA + R +G + P
Sbjct: 159 AMGLTDQDIVALSGGHTIG----AAHKER---------------------SGFE---GPW 190
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 191 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 250
Query: 296 VKMGNI 301
K+ +
Sbjct: 251 QKLSEL 256
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG AA + R +G + P
Sbjct: 147 AMGLTDQDIVALSGGHTIG----AAHKER---------------------SGFE---GPW 178
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 179 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 238
Query: 296 VKMGNI 301
K+ +
Sbjct: 239 QKLSEL 244
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG AA + R +G + P
Sbjct: 147 AMGLTDQDIVALSGGHTIG----AAHKER---------------------SGFE---GPW 178
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 179 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 238
Query: 296 VKMGNI 301
K+ +
Sbjct: 239 QKLSEL 244
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 75/186 (40%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 146
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG AA + R +G + P
Sbjct: 147 AMGLTDQDIVALSGGHTIG----AAHKER---------------------SGFE---GPW 178
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 179 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 238
Query: 296 VKMGNI 301
K+ +
Sbjct: 239 QKLSEL 244
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 106/295 (35%), Gaps = 81/295 (27%)
Query: 42 RIARDEMTKAVNRQPRNAASILRLFFH-----DCFVNGCDGSVLLDDTATFTGEKNAGPN 96
R R ++ ++ + S++RL +H DCF +K+ PN
Sbjct: 10 RALRADIEDMISEKLELGPSLIRLAWHEAASYDCF------------------KKDGSPN 51
Query: 97 RNSAR--------GFEVIDAIKTRLEAACNA--TVSCADILAVAARDGVALLGGPTWTVP 146
S R G + +D + LE +S AD+ +AA + +GGPT
Sbjct: 52 SASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFC 111
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFR 206
GR DA+ S + ++P S + + + +F G Q+ L G H G
Sbjct: 112 WGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG-------- 163
Query: 207 NRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRGLLH---- 262
+T+I+ F+ P N FDNS++ L++ +L+
Sbjct: 164 -----ETHIE--FSGYH-------------GPWTHDKNGFDNSFFTQLLDEDWVLNPKVE 203
Query: 263 ----------------SDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKMGNI 301
SD L S V Y+ + F +DFA A K+ +
Sbjct: 204 QMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 73/186 (39%), Gaps = 36/186 (19%)
Query: 121 VSCADILAVAARDGVALLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA- 179
+S AD +A V + GGP GR D + ++P + L +F
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDK---PEPPPEGRLPDATKGSDHLRDVFGK 158
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
A GLT QD+ LSGGH IG A A+G + P
Sbjct: 159 AMGLTDQDIVALSGGHTIGAAHKE-------------------------ASGFE---GPW 190
Query: 240 DQTPNRFDNSYYQNLV--NRRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAM 295
P FDNSY+ L+ + GLL SD+ L + V Y+ + +F D+A A
Sbjct: 191 TSNPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAH 250
Query: 296 VKMGNI 301
K+ +
Sbjct: 251 QKLSEL 256
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 105/295 (35%), Gaps = 81/295 (27%)
Query: 42 RIARDEMTKAVNRQPRNAASILRLFFH-----DCFVNGCDGSVLLDDTATFTGEKNAGPN 96
R R ++ ++ + S++RL +H DCF +K+ PN
Sbjct: 9 RALRADIEDMISEKLELGPSLIRLAWHEAASYDCF------------------KKDGSPN 50
Query: 97 RNSAR--------GFEVIDAIKTRLEAACNA--TVSCADILAVAARDGVALLGGPTWTVP 146
S R G + +D + LE +S AD+ +AA + +GGPT
Sbjct: 51 SASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFC 110
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFR 206
GR DA+ S + ++P S + + + +F G Q+ L G H G
Sbjct: 111 WGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG-------- 162
Query: 207 NRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRGLLH---- 262
+ +I+ F+ P N FDNS++ L++ +L+
Sbjct: 163 -----ECHIE--FSGYH-------------GPWTHDKNGFDNSFFTQLLDEDWVLNPKVE 202
Query: 263 ----------------SDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKMGNI 301
SD L S V Y+ + F +DFA A K+ +
Sbjct: 203 QMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 257
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 105/295 (35%), Gaps = 81/295 (27%)
Query: 42 RIARDEMTKAVNRQPRNAASILRLFFH-----DCFVNGCDGSVLLDDTATFTGEKNAGPN 96
R R ++ ++ + S++RL +H DCF +K+ PN
Sbjct: 10 RALRADIEDMISEKLELGPSLIRLAWHEAASYDCF------------------KKDGSPN 51
Query: 97 RNSAR--------GFEVIDAIKTRLEAACNA--TVSCADILAVAARDGVALLGGPTWTVP 146
S R G + +D + LE +S AD+ +AA + +GGPT
Sbjct: 52 SASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFC 111
Query: 147 LGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFR 206
GR DA+ S + ++P S + + + +F G Q+ L G H G
Sbjct: 112 WGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCG-------- 163
Query: 207 NRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRGLLH---- 262
+ +I+ F+ P N FDNS++ L++ +L+
Sbjct: 164 -----ECHIE--FSGYH-------------GPWTHDKNGFDNSFFTQLLDEDWVLNPKVE 203
Query: 263 ----------------SDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKMGNI 301
SD L S V Y+ + F +DFA A K+ +
Sbjct: 204 QMQLMDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 79/234 (33%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G H +G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P D T N FDNS+Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWDATNNVFDNSFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +PGP S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPGPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPEVFDSQFF 198
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +PGP S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPGPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPEVFDSQFF 198
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +PGP S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPGPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------GVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPEVFDSQFF 198
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 78/234 (33%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G H +G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P PN FDNS+Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWTANPNVFDNSFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPQDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPGVFDSQFF 198
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVYLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPGVFDSQFF 198
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------GVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPEVFDSQFF 198
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPEVFDSQFF 198
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPGVFDSQFF 198
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAA------------AKVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPGVFDSQFF 198
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPEVFDSQFF 198
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPQVFDSQFF 198
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVSLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPGVFDSQFF 198
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEPFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPGVFDSQFF 198
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G H +G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N FDNS+Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWTANNNVFDNSFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVN------- 256
+T +G + P N F N +Y NL+N
Sbjct: 176 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 212
Query: 257 ----------RRGLLH--SDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+ G +H +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMHLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N YY NL+N
Sbjct: 176 --------------------KTHLKNSGYE---GPWGAANNVFTNEYYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKNSGYE---GPFGAANNVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 176 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4FEF|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 48/197 (24%)
Query: 63 LRLFFHDCFV-------NGCDGSVLLDDTATFTGEKNAGPNRNSARGFEVIDAIKTRLEA 115
LRL FHD G DGS++ DT NAG + E++ A K +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGID-------EIVSAQKPFV-- 92
Query: 116 ACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATL 174
+S D + A GV+ GG LGR DA AS + +P S+ ++
Sbjct: 93 -AKHNISAGDFIQFAGAVGVSNCPGGVRIPFFLGRPDAVAAS---PDHLVPEGFDSVDSI 148
Query: 175 ISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDP 234
++ G + ++ L H+I A +DP+ T
Sbjct: 149 LARMGDAGFSPVEVVWLLASHSIAAAD------------KVDPSIPGT------------ 184
Query: 235 NLAPLDQTPNRFDNSYY 251
P D TP FD+ ++
Sbjct: 185 ---PFDSTPEVFDSQFF 198
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 176 --------------------KTELKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 127
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 128 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 181
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 182 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 218
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 219 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 176 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 63 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 117
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 118 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 171
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 172 --------------------KTHLKRSGYE---GPFGAANNVFTNEFYLNLLNEDWKLEK 208
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 209 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 262
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 176 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 176 --------------------KTHLKNSGYE---GPYGAANNVFTNEFYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 176 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 74/234 (31%), Gaps = 55/234 (23%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
T GG N N F N +Y NL+N
Sbjct: 176 -----------------KTHLKNSGYEGGGAN--------NVFTNEFYLNLLNEDWKLEK 210
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 211 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 74/234 (31%), Gaps = 55/234 (23%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 122
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 123 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 176
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
T GG N N F N +Y NL+N
Sbjct: 177 -----------------KTHLKNSGYEGGGAN--------NVFTNEFYLNLLNEDWKLEK 211
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 212 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNENWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKRSGYE---GPWGAANNVFTNEFYLNLLNENWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 74/234 (31%), Gaps = 55/234 (23%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 127
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 128 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 181
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
T GG N N F N +Y NL+N
Sbjct: 182 -----------------KTHLKNSGYEGGGAN--------NVFTNEFYLNLLNEDWKLEK 216
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 217 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKRSGYE---GPWGAANNVFTNEFYLNLLNENWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRGLLH- 262
+T +G + P N F N +Y NL+N L
Sbjct: 181 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 217
Query: 263 --SDQELFNGGS------------QD----ATVRGYSTNPASFARDFAAAMVKM 298
++ E ++ S QD + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 176 --------------------KTHLKRSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKNSGYE---GPQGAANNVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL- 184
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+ + GG N N F N +Y NL+N
Sbjct: 185 -------------------KNSGYEGPGGAAN--------NVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 69 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 123
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 124 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 177
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 178 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 214
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 215 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 127
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 128 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 181
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRGLLH- 262
+T +G + P N F N +Y NL+N L
Sbjct: 182 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 218
Query: 263 --SDQELFNGGS------------QD----ATVRGYSTNPASFARDFAAAMVKM 298
++ E ++ S QD + V+ Y+ + F +DF+ A K+
Sbjct: 219 NDANNEQWDSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 69 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 123
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 124 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 177
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 178 --------------------KTHLKRSGYE---GPFGAANNVFTNEFYLNLLNEDWKLEK 214
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 215 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFSKAFEKL 268
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 127
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 128 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 181
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRGLLH- 262
+T +G + P N F N +Y NL+N L
Sbjct: 182 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 218
Query: 263 --SDQELFNGGS------------QD----ATVRGYSTNPASFARDFAAAMVKM 298
++ E ++ S QD + V+ Y+ + F +DF+ A K+
Sbjct: 219 NDANNEQWDSKSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKRSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 126
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 127 PWRAGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 181 --------------------KTHLKNSGYE---GPWGCANNVFTNEFYLNLLNEDWKLEK 217
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 218 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL- 182
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+ + GG N N F N +Y NL+N
Sbjct: 183 -------------------KNSGYEGPGGAAN--------NVFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 122
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 123 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL- 180
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+ + GG N N F N +Y NL+N
Sbjct: 181 -------------------KNSGYEGPGGAAN--------NVFTNEFYLNLLNEDWKLEK 213
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 214 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 176 --------------------KTHLKNSGYE---GPQGAANNVFTNEFYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL- 182
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+ + GG N N F N +Y NL+N
Sbjct: 183 -------------------KNSGYEGPGGAAN--------NVFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL- 179
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+ + GG N N F N +Y NL+N
Sbjct: 180 -------------------KNSGYEGPGGAAN--------NVFTNEFYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRGLLH- 262
+T +G + P N F N +Y NL+N L
Sbjct: 179 --------------------KTHLKRSGYE---GPWGAANNVFTNEFYLNLLNEDWKLEK 215
Query: 263 --SDQELFNGGS------------QD----ATVRGYSTNPASFARDFAAAMVKM 298
++ E ++ S QD + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTXYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 79/234 (33%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL- 182
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRGLLH- 262
+ + GG N N F N +Y NL+N L
Sbjct: 183 -------------------KNSGYEGPGGAAN--------NVFTNEFYLNLLNEDWKLEK 215
Query: 263 --SDQELFNGGS------------QD----ATVRGYSTNPASFARDFAAAMVKM 298
++ E ++ S QD + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRAGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N +Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNCFTNEFYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 121
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 122 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 175
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N Y NL+N
Sbjct: 176 --------------------KTHLKNSGYE---GPWGAANNVFTNEKYLNLLNEDWKLEK 212
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 213 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1QR4|A Chain A, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
pdb|1QR4|B Chain B, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
Length = 186
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 24/185 (12%)
Query: 92 NAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTWTVPLGRRD 151
NAG + ++ + EV D +T L V+ D + T+ P G+++
Sbjct: 2 NAGTDLDNPKDLEVSDPTETTLSLRWRRPVAKFDRYRL------------TYVSPSGKKN 49
Query: 152 ARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYN 211
+ + + G + IS+ A KG T + G +G + +F + N
Sbjct: 50 EMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITEN 109
Query: 212 DTNIDPA-----FATTRRTTCPATGGDPNLAPLDQTPNRFD-------NSYYQNLVNRRG 259
+ + R + P TGG PN+ +D + R Y N+++ +G
Sbjct: 110 SATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKG 169
Query: 260 LLHSD 264
S+
Sbjct: 170 FEESE 174
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/234 (18%), Positives = 75/234 (32%), Gaps = 53/234 (22%)
Query: 84 TATFTGEKNAGPNRNSARGFEVIDAIKTRLEAACNATVSCADILAVAARDGVALLGGPTW 143
T F E N N GF+ ++ I +S D+ ++ V + GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKI 124
Query: 144 TVPLGRRDARTASQSAANSQIPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCA 203
GR D + N ++P + + F + +++ L G HA+G
Sbjct: 125 PWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALG----- 178
Query: 204 AFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPLDQTPNRFDNSYYQNLVNRRG---- 259
+T +G + P N F N Y NL+N
Sbjct: 179 --------------------KTHLKNSGYE---GPWGAANNVFTNEGYLNLLNEDWKLEK 215
Query: 260 ---------------LLHSDQELFNGGSQDATVRGYSTNPASFARDFAAAMVKM 298
+L +D L + V+ Y+ + F +DF+ A K+
Sbjct: 216 NDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2VG9|A Chain A, Crystal Structure Of Loop Swap Mutant Of Necallimastix
Patriciarum Xyn11a
Length = 217
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 66 FFHDCFVNGCDGSVLLDDTATFTGEKNAGPNR 97
F ++ + NG +GS+ L ATF E NA NR
Sbjct: 19 FSYEIWTNGGEGSMTLGSGATFKAEWNAAVNR 50
>pdb|1QPA|A Chain A, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
pdb|1QPA|B Chain B, Lignin Peroxidase Isozyme Lip4.65 (Pi 4.65)
Length = 345
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 32/133 (24%)
Query: 121 VSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLIS-MF 178
V+ D +A A GV+ G P LGR +A +Q+A + +P P ++ +++ M
Sbjct: 104 VTPGDFIAFAGAVGVSNCPGAPQMQFFLGRPEA---TQAAPDGLVPEPFHTIDQVLARML 160
Query: 179 AAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAP 238
A G + L H+I A ++DP + P
Sbjct: 161 DAGGFDEIETVXLLSAHSIAAAN------------DVDPTISGL---------------P 193
Query: 239 LDQTPNRFDNSYY 251
D TP +FD+ ++
Sbjct: 194 FDSTPGQFDSQFF 206
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 63/175 (36%), Gaps = 42/175 (24%)
Query: 121 VSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQIPGPSSSLATLISMFA 179
VS D + A G A GGP GR + SQ + + +P P+ S +++ A
Sbjct: 104 VSFGDFVQFAGAVGAANCAGGPRLQFLAGRSNI---SQPSPDGLVPDPTDSADKILARMA 160
Query: 180 AKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTRRTTCPATGGDPNLAPL 239
G + ++ L H+I + DT++ +P
Sbjct: 161 DIGFSPTEVVHLLASHSIA--------AQYEVDTDV-------------------AGSPF 193
Query: 240 DQTPNRFDNSYYQNLVNRRGLLHSDQELFNGGSQDATVRGYSTNPASF--ARDFA 292
D TP+ FD ++ LLH Q F G Q V S P F DFA
Sbjct: 194 DSTPSVFDTQFF-----VESLLHGTQ--FTGSGQGGEV--MSPIPGEFRLQSDFA 239
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 31/148 (20%)
Query: 105 VIDAIKTRLEAACNATVSCADILAVAARDGVA-LLGGPTWTVPLGRRDARTASQSAANSQ 163
+ D ++ N VS D++ AA G++ G P GR +SQ + S
Sbjct: 95 LTDTVEALRAVGINHGVSFGDLIQFAAAVGMSNCPGSPRLEFLTGRS---NSSQPSPPSL 151
Query: 164 IPGPSSSLATLISMFAAKGLTAQDMTVLSGGHAIGFARCAAFRNRIYNDTNIDPAFATTR 223
IPGP +++ ++ F G + ++ L H++ A + I+
Sbjct: 152 IPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSL--ASQEGLNSAIFR------------ 197
Query: 224 RTTCPATGGDPNLAPLDQTPNRFDNSYY 251
+PLD TP FD +Y
Sbjct: 198 -------------SPLDSTPQVFDTQFY 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,889,238
Number of Sequences: 62578
Number of extensions: 349477
Number of successful extensions: 880
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 735
Number of HSP's gapped (non-prelim): 142
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)