BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>020971
MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW
EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP
SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGI
LYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKD
TCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNV
PVDVDGLFGFVPFFKPPGL

High Scoring Gene Products

Symbol, full name Information P value
VTE1
VITAMIN E DEFICIENT 1
protein from Arabidopsis thaliana 5.5e-141
VTE1
Probable tocopherol cyclase, chloroplastic
protein from Oryza sativa Japonica Group 1.6e-132

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  020971
        (319 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2125657 - symbol:VTE1 "VITAMIN E DEFICIENT 1" ...  1379  5.5e-141  1
UNIPROTKB|Q6K7V6 - symbol:VTE1 "Probable tocopherol cycla...  1299  1.6e-132  1


>TAIR|locus:2125657 [details] [associations]
            symbol:VTE1 "VITAMIN E DEFICIENT 1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast"
            evidence=ISM;ISS;IDA] [GO:0009706 "chloroplast inner membrane"
            evidence=TAS] [GO:0009976 "tocopherol cyclase activity"
            evidence=IMP;IDA] [GO:0010189 "vitamin E biosynthetic process"
            evidence=IDA] [GO:0006979 "response to oxidative stress"
            evidence=IEP] [GO:0009644 "response to high light intensity"
            evidence=IEP] [GO:0006631 "fatty acid metabolic process"
            evidence=IGI] [GO:0015994 "chlorophyll metabolic process"
            evidence=IGI] [GO:0016122 "xanthophyll metabolic process"
            evidence=IMP] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009266
            "response to temperature stimulus" evidence=IMP] [GO:0009915
            "phloem sucrose loading" evidence=IMP] [GO:0031347 "regulation of
            defense response" evidence=IMP] [GO:0009534 "chloroplast thylakoid"
            evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0010264 "myo-inositol hexakisphosphate biosynthetic process"
            evidence=RCA] InterPro:IPR025893 Pfam:PF14249 UniPathway:UPA00160
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006979 GO:GO:0006631
            GO:GO:0009706 GO:GO:0009644 EMBL:AL022537 GO:GO:0009534
            GO:GO:0010287 GO:GO:0009266 EMBL:AL161582 GO:GO:0009915
            GO:GO:0031347 GO:GO:0010189 GO:GO:0015994 EMBL:AF302188
            IPI:IPI00540321 RefSeq:NP_567906.1 UniGene:At.22259 STRING:Q94FY7
            PaxDb:Q94FY7 PRIDE:Q94FY7 EnsemblPlants:AT4G32770.1 GeneID:829413
            KEGG:ath:AT4G32770 TAIR:At4g32770 eggNOG:NOG05806
            HOGENOM:HOG000005813 InParanoid:Q94FY7 KO:K09834 OMA:PHSGYHW
            PhylomeDB:Q94FY7 ProtClustDB:PLN02818 Genevestigator:Q94FY7
            GermOnline:AT4G32770 GO:GO:0009976 GO:GO:0016122 Uniprot:Q94FY7
        Length = 488

 Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
 Identities = 240/321 (74%), Positives = 276/321 (85%)

Query:     1 MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
             +LGNTF A  G++ P KEVPP+EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARW
Sbjct:   168 VLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARW 227

Query:    61 EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
             EYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAP
Sbjct:   228 EYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAP 287

Query:   121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
             SYSEKNWGG FPRKWFWVQCNVFEGATGEVALTAGGGLRQLP L +++ENAA++ +HYDG
Sbjct:   288 SYSEKNWGGGFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDG 347

Query:   180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
              +YEFVPWNGVV WE+S WGYWY  AEN+ H+VEL+A T   GT LRAPT+E GLA AC+
Sbjct:   348 KMYEFVPWNGVVRWEMSPWGYWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACR 407

Query:   240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTL 298
             D+C+GEL LQ+WER YDG+KGK+IL+  S MAA+E+GGGPWF TWK  T+ TPELL++ L
Sbjct:   408 DSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQAL 467

Query:   299 NVPVDVDGLFGFVPFFKPPGL 319
              VP+D++   G VPFFKPPGL
Sbjct:   468 QVPLDLESALGLVPFFKPPGL 488


>UNIPROTKB|Q6K7V6 [details] [associations]
            symbol:VTE1 "Probable tocopherol cyclase, chloroplastic"
            species:39947 "Oryza sativa Japonica Group" [GO:0006979 "response
            to oxidative stress" evidence=IMP] [GO:0009651 "response to salt
            stress" evidence=IMP] InterPro:IPR025893 Pfam:PF14249
            UniPathway:UPA00160 GO:GO:0006979 GO:GO:0009651 GO:GO:0006631
            GO:GO:0009644 GO:GO:0010287 EMBL:AP008208 EMBL:CM000139
            GO:GO:0009266 GO:GO:0009915 GO:GO:0031347 GO:GO:0010189
            GO:GO:0015994 eggNOG:NOG05806 HOGENOM:HOG000005813 KO:K09834
            OMA:PHSGYHW ProtClustDB:PLN02818 GO:GO:0009976 GO:GO:0016122
            EMBL:AP004770 EMBL:AP005536 EMBL:AK072052 RefSeq:NP_001046545.1
            UniGene:Os.18701 STRING:Q6K7V6 PRIDE:Q6K7V6
            EnsemblPlants:LOC_Os02g17650.1 GeneID:4329007 KEGG:osa:4329007
            Gramene:Q6K7V6 Uniprot:Q6K7V6
        Length = 470

 Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
 Identities = 223/319 (69%), Positives = 264/319 (82%)

Query:     1 MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
             MLGNTF  + GS PP  EVPPQEF+ RVLEGFQVTP+WHQG I DDGR+ +   V++ARW
Sbjct:   153 MLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARW 212

Query:    61 EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
             EYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMAGGLSTGWIEWDGERFEF++AP
Sbjct:   213 EYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAP 272

Query:   121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGI 180
             SYSEKNWG  FPRKW+WVQCNVF GA+GEVALTA GGLR++ + +++E+ ++IGIHY+G 
Sbjct:   273 SYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGK 332

Query:   181 LYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKD 240
              YEFVPW G VSW+I+ WG+W  + EN+ H+VE++ATTK PGT LRAPT EAGL PACKD
Sbjct:   333 FYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKD 392

Query:   241 TCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNV 300
             TC+G+L LQ+WE+R DG KGKMILD TS+MAALEVGGGPWFN WK  T + E++   +  
Sbjct:   393 TCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGT 452

Query:   301 PVDVDGLFGFVPFFKPPGL 319
              VDV+ LF  +PF KPPGL
Sbjct:   453 QVDVESLFP-IPFLKPPGL 470


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.467    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      319       319   0.00084  116 3  12 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  207 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.60u 0.20s 16.80t   Elapsed:  00:00:00
  Total cpu time:  16.60u 0.20s 16.80t   Elapsed:  00:00:00
  Start:  Mon May 20 17:14:20 2013   End:  Mon May 20 17:14:20 2013

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