BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020971
         (319 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HJ1|A Chain A, Crystal Structure Of A 3d Domain-Swapped Dimer Of Protein
           Hi0395 From Haemophilus Influenzae
 pdb|2HJ1|B Chain B, Crystal Structure Of A 3d Domain-Swapped Dimer Of Protein
           Hi0395 From Haemophilus Influenzae
          Length = 97

 Score = 31.2 bits (69), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 130 AFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGI 175
           AFP +++     V EG T + A+T  G L Q P +D   N   IGI
Sbjct: 20  AFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNK--IGI 63


>pdb|3SHS|A Chain A, Three N-Terminal Domains Of The Bacteriophage Rb49 Highly
           Immunogenic Outer Capsid Protein (Hoc)
          Length = 304

 Score = 27.7 bits (60), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 45/112 (40%), Gaps = 31/112 (27%)

Query: 202 YFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKDTCFGELTLQLWERRYDGTKGK 261
           +F   +QT  VEL AT K+ G          G  PA             +E  Y  +KG+
Sbjct: 101 HFYVSSQTD-VELHATVKFSG----------GKTPADN-----------YELHYSWSKGE 138

Query: 262 MILDVTSDMAALEV----GGGPWFNTW-----KAKTATPELLRRTLNVPVDV 304
            ++D T D+   E      G      W      A +A+ +++  T+NV  DV
Sbjct: 139 DVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDV 190


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.467 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,397,689
Number of Sequences: 62578
Number of extensions: 521741
Number of successful extensions: 919
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 6
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)