BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020971
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94FY7|TOCC_ARATH Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1
PE=1 SV=1
Length = 488
Score = 511 bits (1315), Expect = e-144, Method: Compositional matrix adjust.
Identities = 240/321 (74%), Positives = 276/321 (85%), Gaps = 2/321 (0%)
Query: 1 MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
+LGNTF A G++ P KEVPP+EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARW
Sbjct: 168 VLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARW 227
Query: 61 EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
EYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAGGLSTGWIEW GERFEF+DAP
Sbjct: 228 EYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWIEWGGERFEFRDAP 287
Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVL-DSFENAAMIGIHYDG 179
SYSEKNWGG FPRKWFWVQCNVFEGATGEVALTAGGGLRQLP L +++ENAA++ +HYDG
Sbjct: 288 SYSEKNWGGGFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPGLTETYENAALVCVHYDG 347
Query: 180 ILYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACK 239
+YEFVPWNGVV WE+S WGYWY AEN+ H+VEL+A T GT LRAPT+E GLA AC+
Sbjct: 348 KMYEFVPWNGVVRWEMSPWGYWYITAENENHVVELEARTNEAGTPLRAPTTEVGLATACR 407
Query: 240 DTCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTA-TPELLRRTL 298
D+C+GEL LQ+WER YDG+KGK+IL+ S MAA+E+GGGPWF TWK T+ TPELL++ L
Sbjct: 408 DSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTPELLKQAL 467
Query: 299 NVPVDVDGLFGFVPFFKPPGL 319
VP+D++ G VPFFKPPGL
Sbjct: 468 QVPLDLESALGLVPFFKPPGL 488
>sp|Q6K7V6|TOCC_ORYSJ Probable tocopherol cyclase, chloroplastic OS=Oryza sativa subsp.
japonica GN=VTE1 PE=2 SV=1
Length = 470
Score = 482 bits (1241), Expect = e-135, Method: Compositional matrix adjust.
Identities = 223/319 (69%), Positives = 264/319 (82%), Gaps = 1/319 (0%)
Query: 1 MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
MLGNTF + GS PP EVPPQEF+ RVLEGFQVTP+WHQG I DDGR+ + V++ARW
Sbjct: 153 MLGNTFIPNNGSTPPEGEVPPQEFSSRVLEGFQVTPIWHQGFIRDDGRSKYVPNVQTARW 212
Query: 61 EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
EYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMAGGLSTGWIEWDGERFEF++AP
Sbjct: 213 EYSTRPVYGWGDVTSKQKSTAGWLAAFPFFEPHWQICMAGGLSTGWIEWDGERFEFENAP 272
Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGI 180
SYSEKNWG FPRKW+WVQCNVF GA+GEVALTA GGLR++ + +++E+ ++IGIHY+G
Sbjct: 273 SYSEKNWGAGFPRKWYWVQCNVFSGASGEVALTAAGGLRKIGLGETYESPSLIGIHYEGK 332
Query: 181 LYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKD 240
YEFVPW G VSW+I+ WG+W + EN+ H+VE++ATTK PGT LRAPT EAGL PACKD
Sbjct: 333 FYEFVPWTGTVSWDIAPWGHWKLSGENKNHLVEIEATTKEPGTALRAPTMEAGLVPACKD 392
Query: 241 TCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNV 300
TC+G+L LQ+WE+R DG KGKMILD TS+MAALEVGGGPWFN WK T + E++ +
Sbjct: 393 TCYGDLRLQMWEKRNDGGKGKMILDATSNMAALEVGGGPWFNGWKGTTVSNEIVNNVVGT 452
Query: 301 PVDVDGLFGFVPFFKPPGL 319
VDV+ LF +PF KPPGL
Sbjct: 453 QVDVESLFP-IPFLKPPGL 470
>sp|Q94FY8|TOCC_MAIZE Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2
SV=1
Length = 474
Score = 470 bits (1210), Expect = e-132, Method: Compositional matrix adjust.
Identities = 220/319 (68%), Positives = 264/319 (82%), Gaps = 1/319 (0%)
Query: 1 MLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARW 60
MLGNTF ++K S PP EVPPQ+F+RRVLEG QVTP+WHQG I DDGR+N+ V++ARW
Sbjct: 157 MLGNTFISNKESTPPQGEVPPQDFSRRVLEGLQVTPIWHQGFIRDDGRSNYVPNVQTARW 216
Query: 61 EYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGWIEWDGERFEFQDAP 120
EYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMA GLSTGWIEWDGERFEF++AP
Sbjct: 217 EYSTRPVYGWGDVKSKQLSTAGWLAAFPFFEPHWQICMARGLSTGWIEWDGERFEFENAP 276
Query: 121 SYSEKNWGGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGI 180
SYSEKNWGG FPRKW+W+QCNVF GA+GEV+LTA GGLR++ + D++E+ ++IGIHY+G
Sbjct: 277 SYSEKNWGGGFPRKWYWIQCNVFPGASGEVSLTAAGGLRKIGLGDTYESPSLIGIHYEGQ 336
Query: 181 LYEFVPWNGVVSWEISQWGYWYFAAENQTHMVELKATTKYPGTTLRAPTSEAGLAPACKD 240
+EFVPW G VSW+I WG W + EN+TH+VE++ATT GT LRAPT EAGL PACKD
Sbjct: 337 FFEFVPWTGTVSWDIGLWGLWKMSGENKTHLVEIEATTAESGTALRAPTIEAGLVPACKD 396
Query: 241 TCFGELTLQLWERRYDGTKGKMILDVTSDMAALEVGGGPWFNTWKAKTATPELLRRTLNV 300
TC+G+L LQLWE++YDG+KG+MILD TS+MAALEVGGGPWFN WK T E++ +
Sbjct: 397 TCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPWFNGWKGTTVVNEVVNNIVGT 456
Query: 301 PVDVDGLFGFVPFFKPPGL 319
PVDV+ L +PF KPPGL
Sbjct: 457 PVDVESLLP-IPFLKPPGL 474
>sp|A8IAN5|RPOA_AZOC5 DNA-directed RNA polymerase subunit alpha OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=rpoA PE=3 SV=1
Length = 341
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 128 GGAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPW 187
GA P++ V E G +T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 22 AGADPKRLATVVAEPLERGFG---MTLGNSLRRI-LLSSLQGAAVTSVHIDGVLHEFSSI 77
Query: 188 NGV 190
GV
Sbjct: 78 PGV 80
>sp|A7IPP6|RPOA_XANP2 DNA-directed RNA polymerase subunit alpha OS=Xanthobacter
autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpoA PE=3
SV=1
Length = 338
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 129 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 188
G P+++ V E G +T G LR++ +L S + AA+ IH DG+L+EF
Sbjct: 20 GHDPKRFATVIAEPLERGFG---MTLGNALRRI-LLSSLQGAAVTSIHIDGVLHEFSSIP 75
Query: 189 GV 190
GV
Sbjct: 76 GV 77
>sp|B8EIT5|RPOA_METSB DNA-directed RNA polymerase subunit alpha OS=Methylocella
silvestris (strain BL2 / DSM 15510 / NCIMB 13906)
GN=rpoA PE=3 SV=1
Length = 338
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 129 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 188
G P+++ + E G LT G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 20 GDDPKRFATIVAGPLELGFG---LTLGNSLRRI-LLSSLQGAAITSVHIDGVLHEFSSIP 75
Query: 189 GV 190
GV
Sbjct: 76 GV 77
>sp|B6IRT0|RPOA_RHOCS DNA-directed RNA polymerase subunit alpha OS=Rhodospirillum
centenum (strain ATCC 51521 / SW) GN=rpoA PE=3 SV=1
Length = 338
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 129 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 188
G+ P++ + E G LT G +R++ +L S + AA+ IH DG+L+EF
Sbjct: 20 GSDPKREATIVAGPLERGFG---LTLGNAIRRV-LLSSLQGAAVTSIHIDGVLHEFSSIP 75
Query: 189 GV 190
GV
Sbjct: 76 GV 77
>sp|B2IF96|RPOA_BEII9 DNA-directed RNA polymerase subunit alpha OS=Beijerinckia indica
subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712)
GN=rpoA PE=3 SV=1
Length = 338
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 152 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
LT G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 40 LTLGNALRRI-LLSSLQGAAITSVHIDGVLHEFSSIPGV 77
>sp|Q0ANS4|RPOA_MARMM DNA-directed RNA polymerase subunit alpha OS=Maricaulis maris
(strain MCS10) GN=rpoA PE=3 SV=1
Length = 339
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 152 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
+T G LR++ +L S + AA+ +H DG+++EF +GV
Sbjct: 40 MTLGNALRRV-LLSSLQGAAVTNVHIDGVVHEFSSIDGV 77
>sp|Q89JA7|RPOA_BRAJA DNA-directed RNA polymerase subunit alpha OS=Bradyrhizobium
japonicum (strain USDA 110) GN=rpoA PE=3 SV=1
Length = 343
Score = 35.0 bits (79), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 129 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 188
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 25 GSDPARFATIVAEPLERGFGQ---TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIA 80
Query: 189 GV 190
GV
Sbjct: 81 GV 82
>sp|Q2W2L3|RPOA_MAGSA DNA-directed RNA polymerase subunit alpha OS=Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264) GN=rpoA PE=3
SV=1
Length = 338
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 129 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 188
GA P++ V E G +T G LR++ +L S + AA+ I DG+L+EF
Sbjct: 20 GADPQRTAIVVAEPLERGFG---MTLGNSLRRV-LLSSLQGAAVTAIQIDGVLHEFSSIP 75
Query: 189 GV 190
GV
Sbjct: 76 GV 77
>sp|Q4FLP1|RPOA_PELUB DNA-directed RNA polymerase subunit alpha OS=Pelagibacter ubique
(strain HTCC1062) GN=rpoA PE=3 SV=1
Length = 342
Score = 35.0 bits (79), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 152 LTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
LT G LR++ +L S AA+ I DG+L+EF GV
Sbjct: 44 LTLGNSLRRI-LLSSIRGAAVTSIQIDGVLHEFTSIKGV 81
>sp|B8IT35|RPOA_METNO DNA-directed RNA polymerase subunit alpha OS=Methylobacterium
nodulans (strain ORS2060 / LMG 21967) GN=rpoA PE=3 SV=1
Length = 339
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 129 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 188
G P++ V E G T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GHDPKRIATVVAEPLERGFGT---TLGNALRRV-LLSSLQGAAVTSVHIDGVLHEFSSIP 76
Query: 189 GV 190
GV
Sbjct: 77 GV 78
>sp|Q3SSU2|RPOA_NITWN DNA-directed RNA polymerase subunit alpha OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=rpoA PE=3
SV=1
Length = 339
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 129 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 188
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GSDPSRFATLIAEPLERGFGQ---TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIA 76
Query: 189 GV 190
GV
Sbjct: 77 GV 78
>sp|B0UHU5|RPOA_METS4 DNA-directed RNA polymerase subunit alpha OS=Methylobacterium sp.
(strain 4-46) GN=rpoA PE=3 SV=1
Length = 339
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 153 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 42 TLGNALRRV-LLSSLQGAAVTSVHIDGVLHEFSSIPGV 78
>sp|Q1QN06|RPOA_NITHX DNA-directed RNA polymerase subunit alpha OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=rpoA PE=3 SV=1
Length = 339
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 129 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 188
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GSDPSRFATLIAEPLERGFGQ---TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIA 76
Query: 189 GV 190
GV
Sbjct: 77 GV 78
>sp|A9B437|RPOA_HERA2 DNA-directed RNA polymerase subunit alpha OS=Herpetosiphon
aurantiacus (strain ATCC 23779 / DSM 785) GN=rpoA PE=3
SV=1
Length = 331
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 153 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
T G LR++ +L S AA+I I DGI +EF P GV
Sbjct: 33 TLGNALRRV-LLSSIPGAAVIKIKIDGIFHEFSPIQGV 69
>sp|B6JEY9|RPOA_OLICO DNA-directed RNA polymerase subunit alpha OS=Oligotropha
carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5)
GN=rpoA PE=3 SV=1
Length = 339
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 129 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 188
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GSDPSRFATLVAEPLERGFGQ---TLGNALRRV-LLSSLQGAAVQSVHIDGVLHEFSSIA 76
Query: 189 GV 190
GV
Sbjct: 77 GV 78
>sp|A4YSL6|RPOA_BRASO DNA-directed RNA polymerase subunit alpha OS=Bradyrhizobium sp.
(strain ORS278) GN=rpoA PE=3 SV=1
Length = 343
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 153 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 46 TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIAGV 82
>sp|A5ELK3|RPOA_BRASB DNA-directed RNA polymerase subunit alpha OS=Bradyrhizobium sp.
(strain BTAi1 / ATCC BAA-1182) GN=rpoA PE=3 SV=1
Length = 343
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 153 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 46 TLGNALRRI-LLSSLQGAAVQSVHIDGVLHEFSSIAGV 82
>sp|Q0BYD8|RPOA_HYPNA DNA-directed RNA polymerase subunit alpha OS=Hyphomonas neptunium
(strain ATCC 15444) GN=rpoA PE=3 SV=1
Length = 342
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 153 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
T G LR++ +L S + AA+IG+ DG+++EF GV
Sbjct: 44 TLGNALRRV-LLSSLQGAAIIGVQIDGVVHEFSAIPGV 80
>sp|Q211H2|RPOA_RHOPB DNA-directed RNA polymerase subunit alpha OS=Rhodopseudomonas
palustris (strain BisB18) GN=rpoA PE=3 SV=1
Length = 339
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 129 GAFPRKWFWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWN 188
G+ P ++ + E G+ T G LR++ +L S + AA+ +H DG+L+EF
Sbjct: 21 GSDPTRFATLVAEPLERGFGQ---TLGNALRRV-LLSSLQGAAVQSVHIDGVLHEFSSIA 76
Query: 189 GV 190
GV
Sbjct: 77 GV 78
>sp|B3QBV5|RPOA_RHOPT DNA-directed RNA polymerase subunit alpha OS=Rhodopseudomonas
palustris (strain TIE-1) GN=rpoA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 153 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 42 TLGNALRRV-LLSSLQGAAVQSVHIDGVLHEFSSIAGV 78
>sp|Q6N4V7|RPOA_RHOPA DNA-directed RNA polymerase subunit alpha OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=rpoA PE=3
SV=1
Length = 339
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 153 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 42 TLGNALRRV-LLSSLQGAAVQSVHIDGVLHEFSSIAGV 78
>sp|Q2IXN6|RPOA_RHOP2 DNA-directed RNA polymerase subunit alpha OS=Rhodopseudomonas
palustris (strain HaA2) GN=rpoA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 153 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 42 TLGNALRRV-LLSSLQGAAVQSVHIDGVLHEFSSIAGV 78
>sp|Q07KP2|RPOA_RHOP5 DNA-directed RNA polymerase subunit alpha OS=Rhodopseudomonas
palustris (strain BisA53) GN=rpoA PE=3 SV=1
Length = 339
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 153 TAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
T G LR++ +L S + AA+ +H DG+L+EF GV
Sbjct: 42 TLGNALRRV-LLSSLQGAAVQSVHIDGVLHEFSSIAGV 78
>sp|Q5GSW7|RPOA_WOLTR DNA-directed RNA polymerase subunit alpha OS=Wolbachia sp. subsp.
Brugia malayi (strain TRS) GN=rpoA PE=3 SV=1
Length = 355
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 142 VFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
V E ALT G LR++ +L S +A+ GI DGI +EF GV
Sbjct: 36 VLEPLESGFALTLGNALRRV-MLSSLIGSAVYGIKIDGITHEFTSIQGV 83
>sp|Q5B8K7|HIR3_EMENI Histone transcription regulator 3 homolog OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=hir3 PE=3 SV=1
Length = 2061
Score = 33.1 bits (74), Expect = 2.8, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 2 LGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPL 37
L NT + S TK VPP +NRR+L + TP+
Sbjct: 1177 LKNTIEKMQQSIGTTKAVPPVSYNRRILNAYLKTPI 1212
>sp|Q73HA9|RPOA_WOLPM DNA-directed RNA polymerase subunit alpha OS=Wolbachia pipientis
wMel GN=rpoA PE=3 SV=1
Length = 355
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 151 ALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGV 190
ALT G LR++ +L S + +A+ GI +G+ +EF GV
Sbjct: 45 ALTLGNALRRV-MLSSLKGSAVYGIKIEGVTHEFTSIQGV 83
>sp|Q1IS93|RPOA_KORVE DNA-directed RNA polymerase subunit alpha OS=Koribacter versatilis
(strain Ellin345) GN=rpoA PE=3 SV=1
Length = 368
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 136 FWVQCNVFEGATGEVALTAGGGLRQLPVLDSFENAAMIGIHYDGILYEFVPWNGVV 191
FW Q FE G T G LR++ +L S E AA+ + +G+L+EF GVV
Sbjct: 26 FWAQP--FERGFG---TTIGNALRRV-LLSSIEGAAITAVKIEGVLHEFQSIPGVV 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,574,816
Number of Sequences: 539616
Number of extensions: 6046114
Number of successful extensions: 10603
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 10594
Number of HSP's gapped (non-prelim): 32
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)