BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020972
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E2N|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
Apo Form
pdb|2E2N|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
Apo Form
pdb|2E2O|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Glucose
pdb|2E2P|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Adp
pdb|2E2P|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Adp
pdb|2E2Q|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Xylose, Mg2+, And Adp
pdb|2E2Q|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Xylose, Mg2+, And Adp
Length = 299
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 126/284 (44%), Gaps = 27/284 (9%)
Query: 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMA 82
+I+G+D G T T + + ++G N+++VG A E I++ +
Sbjct: 3 IIVGVDAGGTKTKAVAYDCEG---------NFIGEGSSGPGNYHNVGLTRAIENIKEAVK 53
Query: 83 DALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT 142
A + V + V+G++ D + I P ++ + +D + AL + T
Sbjct: 54 IAA------KGEADVVGMGVAGLDSKFDWENFTPLASLIAP---KVIIQHDGVIALFAET 104
Query: 143 MGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTAVIRAYDGR 202
+G+ G V+IAGTG++ G+ +L D GS Y + +AL V++ DG
Sbjct: 105 LGE-PGVVVIAGTGSVVEGYN-GKEFLRVGGRGWLLSDDGSAYWVGRKALRKVLKMMDGL 162
Query: 203 GPDTMLTSNILSTLELSSPDELIGWTYVDPSWAR-IAALVPVVVSCAEAGDEVANKILQD 261
T+L + +L T+ + DEL+ W+Y +A++ V A GD VA IL+
Sbjct: 163 ENKTILYNKVLKTINVKDLDELVMWSYTSSCQIDLVASIAKAVDEAANEGDTVAMDILKQ 222
Query: 262 SVEELA-----LSVKAVVQRLSLSGEGVTYTKILKEKVPLLMEN 300
E LA L+ K ++ L G G+ + I + L +E
Sbjct: 223 GAELLASQAVYLARKIGTNKVYLKG-GMFRSNIYHKFFTLYLEK 265
>pdb|2CH5|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
pdb|2CH5|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With N-Acetylglucosamine
Length = 347
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 8/227 (3%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SAVRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R++ L++SG + +
Sbjct: 29 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 88
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+
Sbjct: 89 ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 146
Query: 172 XXXXPILGDWGSGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGW 227
++GD GS Y IA QA+ V + D P + PD L +
Sbjct: 147 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTH 206
Query: 228 TYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVV 274
Y D R A + A+ GD ++ I + + E L + AV+
Sbjct: 207 LYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVL 253
>pdb|2CH6|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|B Chain B, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|C Chain C, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
pdb|2CH6|D Chain D, Crystal Structure Of Human N-Acetylglucosamine Kinase In
Complex With Adp And Glucose
Length = 344
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 97/227 (42%), Gaps = 8/227 (3%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SAVRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R++ L++SG + +
Sbjct: 26 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 85
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+
Sbjct: 86 ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 143
Query: 172 XXXXPILGDWGSGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGW 227
++GD GS Y IA QA+ V + D P + PD L +
Sbjct: 144 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTH 203
Query: 228 TYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVV 274
Y D R A + A+ GD ++ I + + E L + AV+
Sbjct: 204 LYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVL 250
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152
+ + A + V G+N+ D+Q+ ++WL+++ D + L G G LI
Sbjct: 74 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAAE-TFLI 132
Query: 153 AGTGTIAY 160
G G I Y
Sbjct: 133 DGNGIIRY 140
>pdb|1Z5Y|E Chain E, Crystal Structure Of The Disulfide-linked Complex Between
The N-terminal Domain Of The Electron Transfer Catalyst
Dsbd And The Cytochrome C Biogenesis Protein Ccmg
Length = 149
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152
+ + A + V G+N+ D+Q+ ++WL+++ D + L G G LI
Sbjct: 49 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE-TFLI 107
Query: 153 AGTGTIAY 160
G G I Y
Sbjct: 108 DGNGIIRY 115
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152
+ + A + V G+N+ D+Q+ ++WL+++ D + L G G LI
Sbjct: 74 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE-TFLI 132
Query: 153 AGTGTIAY 160
G G I Y
Sbjct: 133 DGNGIIRY 140
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAALASGTMGKLHGCVL 151
+ + A + V G+N+ D+Q+ ++WL+++ P + L+ D + L G G L
Sbjct: 91 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLF-DGDGMLGLDLGVYGAPE-TFL 148
Query: 152 IAGTGTIAY 160
I G G I Y
Sbjct: 149 IDGNGIIRY 157
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152
+ + A + V G+N+ D+Q+ ++WL+++ D + L G G LI
Sbjct: 35 NQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE-TFLI 93
Query: 153 AGTGTIAY 160
G G I Y
Sbjct: 94 DGNGIIRY 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,184,102
Number of Sequences: 62578
Number of extensions: 350518
Number of successful extensions: 842
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 15
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)