BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020972
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54PM7|NAGK_DICDI N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk
PE=3 SV=2
Length = 319
Score = 181 bits (458), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 157/287 (54%), Gaps = 29/287 (10%)
Query: 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE-- 78
+E+ +G+DGG T T + + LAR + CSN++SVGED A+ I
Sbjct: 3 KEIFIGIDGGGTKTSTVAVDSNGQE---------LARHTSPCSNYHSVGEDLAKAAINEG 53
Query: 79 -----KVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHND 133
+ + + + + V ++CL +SGV+ D+ + +W+ ++ ++ +HND
Sbjct: 54 IKYVIRKVKETITDDDNKEVTVGSICLGMSGVDREKDKLLVKSWVTELLGESINYSIHND 113
Query: 134 ALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALT 193
A+ AL+SGT GKL G V+I GTG I+ GF +G R+ G GP+LGD+GSGY I L
Sbjct: 114 AIVALSSGTQGKLFGVVIICGTGCISLGFNREGVSGRSGGWGPLLGDYGSGYQIGYDILR 173
Query: 194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP---SWARIAALVPVVVSCAEA 250
V++A D GP T LT +L L+L+ ++LI W Y DP SW + A L P+ A+
Sbjct: 174 HVLKAKDQVGPKTSLTQVLLEKLQLTKEEDLISWAY-DPKTQSWQKFAQLSPLAFEQAQL 232
Query: 251 GDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLL 297
GDE++N IL D+ L + +V+++L L E EK PL+
Sbjct: 233 GDEISNLILVDAANALYDLINSVIKKLGLDKE---------EKFPLV 270
>sp|Q3SZM9|NAGK_BOVIN N-acetyl-D-glucosamine kinase OS=Bos taurus GN=NAGK PE=2 SV=1
Length = 344
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 111/252 (44%), Gaps = 18/252 (7%)
Query: 29 GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
GGT S V + L + +LA A +NH +G D E I +++ A K+
Sbjct: 11 GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKA 60
Query: 89 GSNR-SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY-VHNDALAALASGTMGKL 146
G + +R + L++SG + + ++ LRD FP Y + DA ++A+ T
Sbjct: 61 GVDPLVPLRGLGLSLSGGDQEDAVRMLMEELRDRFPYLSESYLITTDAAGSIATATPDG- 119
Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG--RGP 204
G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V + D P
Sbjct: 120 -GVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAP 178
Query: 205 DTMLTSNILSTLELSSPDEL--IGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDS 262
+ PD L + Y D +R A V A+ GD ++ I + +
Sbjct: 179 HDIGYVKQAMFNYFQVPDRLGILTHLYRDFDKSRFAGFCRKVAEGAQQGDPLSRCIFRKA 238
Query: 263 VEELALSVKAVV 274
E L V AV+
Sbjct: 239 GEMLGRHVVAVL 250
>sp|Q9UJ70|NAGK_HUMAN N-acetyl-D-glucosamine kinase OS=Homo sapiens GN=NAGK PE=1 SV=4
Length = 344
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 8/230 (3%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SAVRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R++ L++SG + +
Sbjct: 26 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 85
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARA 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+ DG ++
Sbjct: 86 ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 143
Query: 172 AGAGPILGDWGSGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGW 227
G G ++GD GS Y IA QA+ V + D P + PD L +
Sbjct: 144 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTH 203
Query: 228 TYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRL 277
Y D R A + A+ GD ++ I + + E L + AV+ +
Sbjct: 204 LYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEI 253
>sp|P81799|NAGK_RAT N-acetyl-D-glucosamine kinase OS=Rattus norvegicus GN=Nagk PE=1
SV=4
Length = 343
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 18/252 (7%)
Query: 29 GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
GGT S V + L + +LA A +NH +G E I +++ A K+
Sbjct: 11 GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTGTCVERINEMVDRAKRKA 60
Query: 89 GSNR-SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALASGTMGKL 146
G + +R++ L++SG + ++ LRD FP + ++ DA ++A+ T
Sbjct: 61 GVDPLVPLRSLGLSLSGGEQEDAVRLLMEELRDRFPYLSESYFITTDAAGSIATATPDG- 119
Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDT 206
G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V + D
Sbjct: 120 -GIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAP 178
Query: 207 MLTSNILSTL--ELSSPDEL--IGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDS 262
++ + PD L + Y D ++ A + A+ GD ++ I + +
Sbjct: 179 HDIGHVKQAMFNYFQVPDRLGILTHLYRDFDKSKFAGFCQKIAEGAQQGDPLSRFIFRKA 238
Query: 263 VEELALSVKAVV 274
E L V AV+
Sbjct: 239 GEMLGRHVVAVL 250
>sp|Q9QZ08|NAGK_MOUSE N-acetyl-D-glucosamine kinase OS=Mus musculus GN=Nagk PE=2 SV=3
Length = 343
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 110/255 (43%), Gaps = 18/255 (7%)
Query: 29 GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
GGT S V + L + +LA A +NH +G D E I +++ A K+
Sbjct: 11 GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTDQCVERINEMVDRAKQKA 60
Query: 89 GSNR-SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY-VHNDALAALASGTMGKL 146
G + +R++ L++SG + ++ LR FP Y + DA ++A+ T
Sbjct: 61 GVDPLVPLRSLGLSLSGGEQEDAVRLLIEELRHRFPNLSENYLITTDAAGSIATATPDG- 119
Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDT 206
G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V + D
Sbjct: 120 -GIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAP 178
Query: 207 MLTSNILSTL--ELSSPDEL--IGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDS 262
++ + PD L + Y D + A + A GD ++ I + +
Sbjct: 179 HDIGHVKQAMFDYFQVPDRLGILTHLYRDFDKCKFAGFCQKIAEGAHQGDPLSRYIFRKA 238
Query: 263 VEELALSVKAVVQRL 277
E L V AV+ +
Sbjct: 239 GEMLGRHVVAVLPEI 253
>sp|Q9KUA9|GSPK_VIBCH Glucosamine kinase GspK OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=gspK PE=1 SV=2
Length = 294
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Query: 130 VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAA 189
++ DA A +G+ G ++IAGTG+ + G+ G + D GSG +
Sbjct: 98 LNTDAYGACLGAHLGE-EGAIMIAGTGSCGI-LLKGGKQYVVGGREFPISDQGSGAVMGL 155
Query: 190 QALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGW--TYVDPSWARIAALVPVVVSC 247
+ + V+ A DG P T L +++ D ++ W T + + + + P + S
Sbjct: 156 RLIQQVLLAQDGIRPHTPLCDVVMNHFN-HDIDSIVAWSKTALPRDYGQFS---PQIFSH 211
Query: 248 AEAGDEVANKILQDSVEELALSVKAVVQR 276
A GD +A ++L+ + ++ + + A+ +
Sbjct: 212 AYCGDPLAIELLKQTAADIEMFLIALHHK 240
>sp|A5GS43|RLMH_SYNR3 Ribosomal RNA large subunit methyltransferase H OS=Synechococcus
sp. (strain RCC307) GN=rlmH PE=3 SV=1
Length = 147
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 162 FTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTL-ELSS 220
+E+GR + G +LG W A++ L VI DG P +++L +L EL+
Sbjct: 66 LSEEGRQLSSVGLAELLGGW------ASERLALVIGGADGHDPTLKQQADVLLSLSELTF 119
Query: 221 PDELIGWTYVD 231
P EL V+
Sbjct: 120 PHELARLMLVE 130
>sp|A6ZVS5|PAN1_YEAS7 Actin cytoskeleton-regulatory complex protein PAN1 OS=Saccharomyces
cerevisiae (strain YJM789) GN=PAN1 PE=3 SV=2
Length = 1460
Score = 31.6 bits (70), Expect = 7.2, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 8 EIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS 67
E W+F E G RE + L + +V P + S P PV R+++ +
Sbjct: 947 ERWEFGIGLEDGVREFLDDLKSNSNKSVTESSPFVPSS----TPTPVDDRSSSPSYSQFK 1002
Query: 68 VGEDAA---RETIEKVMADALLKSGSNRSAV 95
E+ A +E +K M + L K NR V
Sbjct: 1003 TAEERAAYLKEQAKKRMKEKLAKFDKNRRNV 1033
>sp|P32521|PAN1_YEAST Actin cytoskeleton-regulatory complex protein PAN1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PAN1 PE=1 SV=2
Length = 1480
Score = 31.6 bits (70), Expect = 7.8, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 8 EIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS 67
E W+F E G RE + L + +V P + S P PV R+++ +
Sbjct: 955 ERWEFGIGLEDGVREFLDDLKSNSNKSVTESSPFVPSS----TPTPVDDRSSSPSYSQFK 1010
Query: 68 VGEDAA---RETIEKVMADALLKSGSNRSAV 95
E+ A +E +K M + L K NR V
Sbjct: 1011 TAEERAAYLKEQAKKRMKEKLAKFDKNRRNV 1041
>sp|A3DN21|PSB1_STAMF Proteasome subunit beta 1 OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=psmB1 PE=3 SV=1
Length = 213
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225
GR+ R G IL Y +A V+ +D +GP + + S +E
Sbjct: 88 GREIRVRGLAKILSLILYSYKLAPLMTEVVVGGFDEKGPQIYVLDPVGSLIE-------- 139
Query: 226 GWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALS-VKAVVQRLSLSGEGV 284
+ + + P+ + E E I D E+LA+S ++ ++R ++SG+GV
Sbjct: 140 ------DKYVALGSGGPIALGIIE--KEYREDIDVDEAEKLAVSAIREAIERDAVSGDGV 191
Query: 285 TYTKILKE 292
+I +E
Sbjct: 192 DVLRITEE 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,962,653
Number of Sequences: 539616
Number of extensions: 5067337
Number of successful extensions: 15001
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14990
Number of HSP's gapped (non-prelim): 13
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)