Query 020972
Match_columns 319
No_of_seqs 244 out of 1216
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:36:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1794 N-Acetylglucosamine ki 100.0 4.7E-40 1E-44 291.0 27.0 277 20-313 1-283 (336)
2 COG2971 Predicted N-acetylgluc 100.0 2.3E-39 5E-44 291.6 30.1 268 20-316 3-271 (301)
3 PF01869 BcrAD_BadFG: BadF/Bad 100.0 5.7E-33 1.2E-37 254.3 27.3 237 25-310 1-237 (271)
4 COG1940 NagC Transcriptional r 100.0 1.4E-33 3.1E-38 263.4 21.8 252 18-316 2-271 (314)
5 TIGR00744 ROK_glcA_fam ROK fam 100.0 2.2E-33 4.8E-38 262.4 21.1 245 25-316 1-274 (318)
6 PRK13310 N-acetyl-D-glucosamin 100.0 8.1E-33 1.7E-37 257.2 21.5 245 23-316 1-267 (303)
7 PRK09557 fructokinase; Reviewe 100.0 3.2E-32 7E-37 252.9 19.2 245 23-316 1-266 (301)
8 PRK05082 N-acetylmannosamine k 100.0 1E-30 2.3E-35 241.6 21.0 236 24-316 3-255 (291)
9 PRK09698 D-allose kinase; Prov 100.0 1.9E-30 4.2E-35 241.0 20.1 240 19-316 1-259 (302)
10 PRK13311 N-acetyl-D-glucosamin 100.0 1.5E-30 3.2E-35 236.5 18.1 224 23-279 1-246 (256)
11 PRK00292 glk glucokinase; Prov 100.0 6.9E-29 1.5E-33 232.2 13.8 238 22-312 2-274 (316)
12 PRK12408 glucokinase; Provisio 100.0 4.5E-27 9.7E-32 221.5 20.7 240 22-313 16-293 (336)
13 PRK14101 bifunctional glucokin 99.9 1.1E-24 2.3E-29 221.5 19.2 243 22-312 18-289 (638)
14 TIGR00749 glk glucokinase, pro 99.9 1.9E-24 4.1E-29 202.2 18.6 244 25-311 1-279 (316)
15 PF00480 ROK: ROK family; Int 99.9 3.5E-22 7.7E-27 171.5 6.4 138 26-192 1-155 (179)
16 TIGR02707 butyr_kinase butyrat 99.8 7.4E-18 1.6E-22 159.1 21.3 250 24-317 2-316 (351)
17 PTZ00288 glucokinase 1; Provis 99.7 9.7E-17 2.1E-21 153.6 18.4 261 21-311 25-342 (405)
18 PRK03011 butyrate kinase; Prov 99.7 7.9E-15 1.7E-19 138.8 20.2 238 23-316 3-317 (358)
19 PF02685 Glucokinase: Glucokin 99.5 2.5E-12 5.3E-17 120.0 17.8 242 25-308 1-270 (316)
20 smart00732 YqgFc Likely ribonu 99.3 1.5E-11 3.3E-16 95.1 8.4 92 23-138 2-97 (99)
21 COG0837 Glk Glucokinase [Carbo 99.2 1.1E-08 2.4E-13 92.6 24.1 242 19-303 3-269 (320)
22 PRK13318 pantothenate kinase; 98.8 3.4E-08 7.4E-13 89.9 12.2 126 24-169 2-147 (258)
23 PRK00976 hypothetical protein; 98.7 6.5E-06 1.4E-10 76.5 22.2 53 240-307 225-277 (326)
24 PLN02914 hexokinase 98.7 3.4E-05 7.4E-10 75.9 27.5 136 16-161 89-259 (490)
25 TIGR00241 CoA_E_activ CoA-subs 98.6 1.3E-05 2.7E-10 72.6 19.9 206 23-303 1-214 (248)
26 PLN02405 hexokinase 98.5 6.9E-05 1.5E-09 74.0 24.0 136 16-161 89-259 (497)
27 PRK13321 pantothenate kinase; 98.5 4.7E-06 1E-10 75.8 14.9 119 23-163 1-140 (256)
28 PTZ00107 hexokinase; Provision 98.5 0.00018 3.9E-09 70.6 26.4 139 16-164 68-254 (464)
29 PLN02596 hexokinase-like 98.4 0.00038 8.2E-09 68.6 26.8 137 16-161 90-259 (490)
30 PLN02362 hexokinase 98.4 0.00049 1.1E-08 68.2 27.3 138 16-164 89-261 (509)
31 TIGR01312 XylB D-xylulose kina 98.4 3.5E-07 7.6E-12 90.3 4.8 101 25-136 1-124 (481)
32 PRK00047 glpK glycerol kinase; 98.3 3.7E-06 8E-11 83.7 9.9 77 19-104 2-84 (498)
33 PF00370 FGGY_N: FGGY family o 98.2 7.9E-06 1.7E-10 73.6 10.0 74 23-105 1-80 (245)
34 PRK10939 autoinducer-2 (AI-2) 98.1 1.2E-05 2.7E-10 80.4 10.3 76 20-104 1-84 (520)
35 PRK04123 ribulokinase; Provisi 98.1 1.5E-05 3.3E-10 80.2 9.7 76 20-104 1-89 (548)
36 TIGR01311 glycerol_kin glycero 98.1 1.7E-05 3.7E-10 78.8 9.8 74 22-104 1-80 (493)
37 COG1070 XylB Sugar (pentulose 98.0 2.2E-05 4.7E-10 78.3 9.7 76 20-104 2-84 (502)
38 TIGR01315 5C_CHO_kinase FGGY-f 98.0 2.5E-05 5.4E-10 78.5 9.3 72 23-103 1-78 (541)
39 PTZ00294 glycerol kinase-like 97.9 5.1E-05 1.1E-09 75.6 10.0 73 23-104 3-83 (504)
40 PRK15080 ethanolamine utilizat 97.9 0.015 3.3E-07 53.2 25.1 136 20-171 22-160 (267)
41 TIGR01234 L-ribulokinase L-rib 97.9 5.7E-05 1.2E-09 75.9 9.2 72 23-103 2-91 (536)
42 TIGR01314 gntK_FGGY gluconate 97.9 6.9E-05 1.5E-09 74.7 9.6 72 23-104 1-78 (505)
43 COG1069 AraB Ribulose kinase [ 97.8 4.3E-05 9.3E-10 74.7 7.4 76 20-103 1-82 (544)
44 PLN02295 glycerol kinase 97.8 7.2E-05 1.6E-09 74.7 9.3 72 23-103 1-82 (512)
45 COG5026 Hexokinase [Carbohydra 97.8 0.00071 1.5E-08 64.7 14.8 136 18-163 71-237 (466)
46 COG3426 Butyrate kinase [Energ 97.8 0.0054 1.2E-07 55.7 19.5 248 20-317 1-319 (358)
47 TIGR02529 EutJ ethanolamine ut 97.8 0.014 3.1E-07 52.4 22.4 128 26-170 1-132 (239)
48 PRK10331 L-fuculokinase; Provi 97.7 0.00015 3.4E-09 71.6 9.9 72 22-104 2-81 (470)
49 PRK13317 pantothenate kinase; 97.7 0.0069 1.5E-07 55.7 19.0 114 22-173 2-122 (277)
50 PRK15027 xylulokinase; Provisi 97.7 0.00017 3.7E-09 71.5 9.1 69 23-102 1-75 (484)
51 TIGR03192 benz_CoA_bzdQ benzoy 97.7 0.019 4E-07 53.0 21.6 65 23-106 33-97 (293)
52 TIGR02628 fuculo_kin_coli L-fu 97.6 0.00033 7.1E-09 69.2 9.6 71 23-104 2-80 (465)
53 PF00349 Hexokinase_1: Hexokin 97.5 0.001 2.2E-08 58.5 11.0 117 16-141 57-202 (206)
54 COG0554 GlpK Glycerol kinase [ 97.5 0.00029 6.2E-09 68.2 7.8 72 21-101 4-81 (499)
55 TIGR03286 methan_mark_15 putat 97.4 0.071 1.5E-06 51.3 22.4 65 22-106 144-208 (404)
56 COG1924 Activator of 2-hydroxy 97.4 0.097 2.1E-06 49.6 22.4 66 22-107 135-200 (396)
57 PF00871 Acetate_kinase: Aceto 97.4 0.084 1.8E-06 50.9 22.8 142 146-316 199-343 (388)
58 PF05378 Hydant_A_N: Hydantoin 97.4 0.00049 1.1E-08 59.0 6.7 63 25-102 2-64 (176)
59 PLN02669 xylulokinase 97.3 0.00099 2.1E-08 67.3 8.9 73 19-101 5-96 (556)
60 TIGR00329 gcp_kae1 metallohydr 97.3 0.16 3.4E-06 47.4 25.0 130 25-166 1-145 (305)
61 TIGR02261 benz_CoA_red_D benzo 97.2 0.1 2.2E-06 47.5 20.3 68 23-107 2-72 (262)
62 TIGR00555 panK_eukar pantothen 97.0 0.15 3.3E-06 46.9 19.1 117 24-173 2-127 (279)
63 KOG1369 Hexokinase [Carbohydra 96.9 0.024 5.2E-07 55.5 13.5 132 21-162 85-247 (474)
64 PRK09605 bifunctional UGMP fam 96.7 0.81 1.8E-05 46.0 25.6 105 23-138 2-113 (535)
65 PRK13320 pantothenate kinase; 96.7 0.098 2.1E-06 47.2 15.4 117 23-169 3-137 (244)
66 KOG2517 Ribulose kinase and re 96.6 0.011 2.5E-07 58.2 9.1 77 21-105 5-88 (516)
67 PRK09604 UGMP family protein; 96.4 0.85 1.8E-05 43.1 24.2 102 23-135 2-113 (332)
68 TIGR02259 benz_CoA_red_A benzo 96.3 0.01 2.2E-07 56.7 6.9 32 22-62 2-33 (432)
69 TIGR03722 arch_KAE1 universal 96.0 1.5 3.2E-05 41.3 25.0 104 25-139 1-111 (322)
70 PRK13324 pantothenate kinase; 95.9 0.52 1.1E-05 42.9 15.8 125 24-168 2-146 (258)
71 PRK13326 pantothenate kinase; 95.7 0.67 1.5E-05 42.3 15.7 120 22-168 6-148 (262)
72 TIGR00671 baf pantothenate kin 95.6 0.83 1.8E-05 41.2 15.7 117 25-168 2-138 (243)
73 PRK14878 UGMP family protein; 95.6 2 4.4E-05 40.3 24.9 100 25-136 1-107 (323)
74 PRK13331 pantothenate kinase; 95.5 1.1 2.4E-05 40.6 16.0 121 16-168 1-135 (251)
75 PRK12440 acetate kinase; Revie 95.4 0.33 7.2E-06 46.7 12.9 139 147-317 202-344 (397)
76 TIGR00016 ackA acetate kinase. 95.2 0.49 1.1E-05 45.7 13.4 141 147-317 207-351 (404)
77 PLN02666 5-oxoprolinase 95.0 0.093 2E-06 57.7 8.8 55 21-85 8-62 (1275)
78 smart00842 FtsA Cell division 95.0 0.18 3.8E-06 43.4 9.0 73 24-106 1-78 (187)
79 PRK12379 propionate/acetate ki 94.7 0.58 1.3E-05 45.1 12.3 140 147-317 198-341 (396)
80 PF14574 DUF4445: Domain of un 94.7 0.12 2.5E-06 50.2 7.7 68 23-100 2-89 (412)
81 PRK07157 acetate kinase; Provi 94.6 0.95 2.1E-05 43.7 13.6 142 146-317 199-344 (400)
82 PRK09472 ftsA cell division pr 94.5 0.31 6.7E-06 47.6 10.4 74 22-105 8-86 (420)
83 COG1521 Pantothenate kinase ty 94.4 1.1 2.3E-05 40.6 12.8 122 24-169 2-144 (251)
84 PRK00180 acetate kinase A/prop 94.4 1 2.2E-05 43.7 13.3 141 147-317 203-347 (402)
85 KOG2707 Predicted metalloprote 94.2 5 0.00011 37.9 20.6 126 3-140 13-149 (405)
86 PF06277 EutA: Ethanolamine ut 94.2 1.1 2.5E-05 43.9 13.1 99 23-123 4-112 (473)
87 PRK13322 pantothenate kinase; 94.2 1.5 3.3E-05 39.6 13.3 116 24-168 2-138 (246)
88 TIGR02627 rhamnulo_kin rhamnul 94.0 0.049 1.1E-06 53.6 3.6 67 25-104 1-77 (454)
89 PRK12397 propionate kinase; Re 93.8 1 2.3E-05 43.4 12.1 64 240-317 282-345 (404)
90 COG0145 HyuA N-methylhydantoin 93.8 0.21 4.6E-06 51.4 7.9 49 22-82 2-50 (674)
91 COG1548 Predicted transcriptio 93.8 0.28 6.1E-06 44.2 7.6 87 21-131 2-94 (330)
92 PRK00109 Holliday junction res 93.8 0.75 1.6E-05 37.7 9.7 93 23-139 5-103 (138)
93 TIGR03123 one_C_unchar_1 proba 93.5 0.42 9.1E-06 44.8 8.7 125 25-170 1-152 (318)
94 TIGR01174 ftsA cell division p 93.0 0.63 1.4E-05 44.5 9.4 72 24-105 2-78 (371)
95 PF03652 UPF0081: Uncharacteri 91.4 0.96 2.1E-05 37.0 7.2 90 23-136 2-98 (135)
96 TIGR03706 exo_poly_only exopol 91.3 6.2 0.00013 36.6 13.5 136 24-169 2-148 (300)
97 PRK10854 exopolyphosphatase; P 91.2 6.8 0.00015 39.3 14.6 136 19-168 8-159 (513)
98 PF03630 Fumble: Fumble ; Int 91.1 7.5 0.00016 36.9 13.9 43 253-310 262-304 (341)
99 PTZ00340 O-sialoglycoprotein e 91.1 14 0.00031 35.0 26.1 107 23-140 2-116 (345)
100 PRK07058 acetate kinase; Provi 90.9 4.5 9.7E-05 39.1 12.2 137 146-317 201-342 (396)
101 TIGR03725 bact_YeaZ universal 90.8 7.9 0.00017 33.7 12.9 96 24-139 1-99 (202)
102 smart00268 ACTIN Actin. ACTIN 90.8 4.3 9.2E-05 38.6 12.2 93 74-170 74-167 (373)
103 PF14639 YqgF: Holliday-juncti 90.7 2.9 6.2E-05 34.9 9.5 98 23-140 6-113 (150)
104 COG0816 Predicted endonuclease 90.2 2.3 4.9E-05 35.1 8.4 90 22-135 2-98 (141)
105 COG0849 ftsA Cell division ATP 89.9 2.5 5.4E-05 41.2 9.8 73 23-105 7-84 (418)
106 COG0282 ackA Acetate kinase [E 89.6 1.6 3.6E-05 41.6 8.0 140 146-316 200-342 (396)
107 TIGR00250 RNAse_H_YqgF RNAse H 89.3 3 6.4E-05 33.8 8.4 91 25-139 1-97 (130)
108 cd00012 ACTIN Actin; An ubiqui 88.8 8.7 0.00019 36.5 12.7 91 76-170 76-167 (371)
109 PTZ00186 heat shock 70 kDa pre 88.8 32 0.00069 35.7 17.4 67 94-162 159-228 (657)
110 PF14450 FtsA: Cell division p 88.6 0.66 1.4E-05 36.9 4.1 93 24-132 1-98 (120)
111 PRK10719 eutA reactivating fac 88.2 7.6 0.00017 38.3 11.7 145 23-171 7-171 (475)
112 COG4820 EutJ Ethanolamine util 88.1 3.3 7.1E-05 36.3 8.1 130 21-170 28-164 (277)
113 TIGR03723 bact_gcp putative gl 87.8 24 0.00052 33.0 24.7 102 24-138 1-114 (314)
114 PRK11031 guanosine pentaphosph 87.2 25 0.00055 35.1 15.2 137 21-169 5-155 (496)
115 PF03309 Pan_kinase: Type III 87.2 19 0.00042 31.3 13.4 18 24-41 1-18 (206)
116 PF13941 MutL: MutL protein 86.9 2.8 6E-05 41.4 7.9 57 24-90 2-58 (457)
117 PF07318 DUF1464: Protein of u 86.6 30 0.00064 32.8 15.5 41 26-76 1-41 (343)
118 PF06723 MreB_Mbl: MreB/Mbl pr 85.1 16 0.00035 34.4 11.9 71 97-169 95-168 (326)
119 PRK13929 rod-share determining 84.5 36 0.00078 32.0 14.6 72 97-170 100-174 (335)
120 PF00814 Peptidase_M22: Glycop 84.4 32 0.0007 31.3 15.6 67 71-140 27-96 (268)
121 PLN02920 pantothenate kinase 1 84.0 43 0.00092 32.4 18.6 45 253-312 272-316 (398)
122 COG1214 Inactive homolog of me 83.5 23 0.00049 31.4 11.6 100 23-140 2-104 (220)
123 COG5146 PanK Pantothenate kina 83.1 16 0.00035 32.8 10.2 47 126-174 120-173 (342)
124 COG0533 QRI7 Metal-dependent p 83.0 43 0.00094 31.7 25.3 120 23-154 2-134 (342)
125 TIGR01175 pilM type IV pilus a 82.7 5.5 0.00012 37.4 7.9 73 22-105 3-78 (348)
126 COG4972 PilM Tfp pilus assembl 82.2 3 6.4E-05 39.1 5.5 71 23-105 11-85 (354)
127 PTZ00452 actin; Provisional 80.8 49 0.0011 31.7 13.7 90 76-170 81-172 (375)
128 PLN02902 pantothenate kinase 80.2 88 0.0019 33.5 19.1 43 252-309 320-362 (876)
129 PTZ00466 actin-like protein; P 78.5 58 0.0013 31.3 13.4 90 76-170 88-178 (380)
130 COG0443 DnaK Molecular chapero 76.5 95 0.002 31.8 15.1 86 68-157 95-183 (579)
131 COG0248 GppA Exopolyphosphatas 76.4 21 0.00045 35.7 9.8 128 22-160 3-143 (492)
132 COG2183 Tex Transcriptional ac 71.6 25 0.00054 36.8 9.2 101 18-139 325-428 (780)
133 PRK00039 ruvC Holliday junctio 70.8 31 0.00067 29.1 8.3 56 23-89 3-61 (164)
134 PRK13328 pantothenate kinase; 69.8 48 0.001 30.0 9.9 18 24-41 3-20 (255)
135 PRK13411 molecular chaperone D 68.7 1.5E+02 0.0032 30.8 14.3 85 69-158 109-198 (653)
136 PF02075 RuvC: Crossover junct 68.5 16 0.00035 30.2 6.0 55 24-89 1-58 (149)
137 PTZ00004 actin-2; Provisional 68.5 99 0.0022 29.5 12.3 69 98-170 104-173 (378)
138 PF04312 DUF460: Protein of un 68.3 27 0.00059 28.6 7.0 30 21-60 31-60 (138)
139 PF11104 PilM_2: Type IV pilus 66.2 14 0.0003 34.8 5.8 68 26-105 1-72 (340)
140 TIGR00904 mreB cell shape dete 65.8 1.2E+02 0.0025 28.4 15.9 65 97-163 100-167 (333)
141 COG3894 Uncharacterized metal- 63.6 17 0.00037 36.1 5.9 31 21-59 163-193 (614)
142 PRK00290 dnaK molecular chaper 63.6 1.8E+02 0.004 29.9 14.7 63 94-158 132-197 (627)
143 PF01548 DEDD_Tnp_IS110: Trans 62.3 19 0.0004 29.1 5.2 29 24-61 1-29 (144)
144 cd00529 RuvC_resolvase Hollida 61.7 42 0.00091 27.8 7.3 55 24-89 2-59 (154)
145 PRK01433 hscA chaperone protei 61.2 2E+02 0.0043 29.5 14.2 87 69-160 117-207 (595)
146 PRK05183 hscA chaperone protei 61.0 2E+02 0.0044 29.5 14.2 63 94-158 148-213 (616)
147 PF00022 Actin: Actin; InterP 60.1 1.2E+02 0.0025 28.8 11.1 92 75-170 74-166 (393)
148 PLN03184 chloroplast Hsp70; Pr 59.6 2.3E+02 0.0049 29.6 15.0 63 94-158 171-236 (673)
149 CHL00094 dnaK heat shock prote 59.6 2.2E+02 0.0047 29.4 15.2 68 94-163 134-204 (621)
150 TIGR00228 ruvC crossover junct 58.9 37 0.0008 28.5 6.4 54 24-89 1-57 (156)
151 KOG2531 Sugar (pentulose and h 57.3 80 0.0017 31.2 9.1 100 22-135 9-144 (545)
152 PRK13928 rod shape-determining 56.3 1.7E+02 0.0037 27.2 15.9 72 97-170 97-171 (336)
153 COG4020 Uncharacterized protei 54.6 55 0.0012 29.8 7.0 49 241-303 231-279 (332)
154 PTZ00280 Actin-related protein 52.0 1.4E+02 0.003 28.9 10.2 71 98-170 105-184 (414)
155 COG3734 DgoK 2-keto-3-deoxy-ga 51.5 27 0.00059 32.2 4.7 31 22-61 5-35 (306)
156 TIGR01175 pilM type IV pilus a 50.6 1.7E+02 0.0037 27.2 10.4 28 24-61 190-217 (348)
157 PRK05082 N-acetylmannosamine k 50.1 11 0.00025 34.4 2.2 39 154-192 134-173 (291)
158 PRK13329 pantothenate kinase; 50.0 1.8E+02 0.0038 26.3 9.8 17 24-40 3-19 (249)
159 PRK13325 bifunctional biotin-- 47.7 96 0.0021 31.8 8.6 20 22-41 338-357 (592)
160 KOG1385 Nucleoside phosphatase 46.8 1.1E+02 0.0023 30.0 8.0 67 21-88 66-134 (453)
161 PF01968 Hydantoinase_A: Hydan 44.8 20 0.00044 33.1 3.0 18 23-40 78-95 (290)
162 PTZ00281 actin; Provisional 44.4 2.9E+02 0.0063 26.3 12.6 90 76-170 82-173 (376)
163 TIGR01319 glmL_fam conserved h 43.5 79 0.0017 31.3 6.8 51 27-89 1-52 (463)
164 COG4126 Hydantoin racemase [Am 42.5 43 0.00094 29.7 4.4 48 69-129 154-201 (230)
165 PRK15080 ethanolamine utilizat 41.3 1.3E+02 0.0027 27.3 7.6 26 24-59 137-162 (267)
166 COG4972 PilM Tfp pilus assembl 38.8 2.5E+02 0.0054 26.7 9.0 95 24-136 195-323 (354)
167 TIGR03123 one_C_unchar_1 proba 37.5 37 0.0008 31.9 3.5 19 22-40 128-146 (318)
168 PF07736 CM_1: Chorismate muta 37.1 84 0.0018 25.0 4.9 37 68-104 13-49 (118)
169 TIGR00143 hypF [NiFe] hydrogen 37.1 1.5E+02 0.0033 31.2 8.2 20 294-315 660-679 (711)
170 KOG2708 Predicted metalloprote 36.4 3.3E+02 0.0071 24.6 10.8 121 23-156 3-134 (336)
171 PF02541 Ppx-GppA: Ppx/GppA ph 35.6 2.6E+02 0.0057 25.3 8.9 94 71-170 34-136 (285)
172 TIGR01129 secD protein-export 34.9 1.2E+02 0.0026 29.4 6.7 73 25-110 1-79 (397)
173 PF11104 PilM_2: Type IV pilus 31.7 2.3E+02 0.0051 26.5 8.0 30 22-61 180-209 (340)
174 PTZ00297 pantothenate kinase; 30.7 8.9E+02 0.019 28.0 19.1 19 23-41 1040-1058(1452)
175 PRK09698 D-allose kinase; Prov 30.5 17 0.00037 33.4 0.1 32 161-192 149-181 (302)
176 TIGR01796 CM_mono_aroH monofun 30.3 1E+02 0.0022 24.5 4.3 36 68-103 13-48 (117)
177 cd02185 AroH Chorismate mutase 30.0 1E+02 0.0022 24.5 4.3 36 68-103 13-48 (117)
178 PRK13410 molecular chaperone D 29.8 46 0.001 34.6 3.0 20 21-40 1-20 (668)
179 PRK09557 fructokinase; Reviewe 29.4 8.2 0.00018 35.5 -2.3 26 154-179 135-160 (301)
180 PRK13310 N-acetyl-D-glucosamin 28.6 14 0.0003 34.1 -1.0 27 154-180 135-161 (303)
181 COG0817 RuvC Holliday junction 28.5 1.5E+02 0.0032 25.0 5.2 54 25-89 1-57 (160)
182 PF01890 CbiG_C: Cobalamin syn 28.4 1.1E+02 0.0024 24.2 4.4 75 75-157 15-89 (121)
183 PF05035 DGOK: 2-keto-3-deoxy- 27.0 37 0.00081 31.4 1.6 49 28-86 1-49 (287)
184 TIGR01865 cas_Csn1 CRISPR-asso 26.4 1.3E+02 0.0029 32.0 5.8 20 22-41 1-20 (805)
185 PF10941 DUF2620: Protein of u 26.2 2.4E+02 0.0053 22.3 5.8 55 101-159 4-58 (117)
186 COG0145 HyuA N-methylhydantoin 26.1 68 0.0015 33.4 3.5 18 24-41 280-297 (674)
187 PRK13930 rod shape-determining 26.0 5.2E+02 0.011 23.8 11.3 74 95-170 100-176 (335)
188 TIGR02529 EutJ ethanolamine ut 25.9 3.8E+02 0.0083 23.7 8.0 26 24-59 110-135 (239)
189 PF06793 UPF0262: Uncharacteri 25.4 4E+02 0.0087 22.3 7.4 101 11-134 40-143 (158)
190 PF06406 StbA: StbA protein; 24.9 1.2E+02 0.0026 28.2 4.7 20 22-41 164-183 (318)
191 COG1940 NagC Transcriptional r 24.4 13 0.00028 34.4 -1.9 39 154-192 145-183 (314)
192 PF13993 YccJ: YccJ-like prote 24.4 62 0.0013 22.6 1.9 26 240-265 18-43 (69)
193 PF12645 HTH_16: Helix-turn-he 24.3 76 0.0016 22.3 2.5 24 244-267 3-27 (65)
194 cd04256 AAK_P5CS_ProBA AAK_P5C 24.0 2.6E+02 0.0057 25.7 6.7 70 77-152 105-200 (284)
195 PHA02535 P terminase ATPase su 23.6 6.9E+02 0.015 25.7 9.9 94 21-139 402-500 (581)
196 PRK11678 putative chaperone; P 22.9 59 0.0013 32.1 2.3 63 94-158 148-221 (450)
197 PF03727 Hexokinase_2: Hexokin 22.8 1.6E+02 0.0034 26.4 4.8 55 253-314 152-206 (243)
198 PRK02853 hypothetical protein; 22.4 4.7E+02 0.01 21.9 8.0 92 21-135 53-147 (161)
No 1
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-40 Score=291.01 Aligned_cols=277 Identities=29% Similarity=0.417 Sum_probs=251.8
Q ss_pred CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc-cceE
Q 020972 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAV 98 (319)
Q Consensus 20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~-i~~I 98 (319)
|+.+|.|||.|.|.++++++|. +++++.+....++|....+.+.+.++|.+.|+++..+++.++.. +.++
T Consensus 1 ~~~~y~GvEGgaT~s~~Vivd~---------~~~~~~~a~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~l 71 (336)
T KOG1794|consen 1 LKDFYGGVEGGATCSRLVIVDE---------DGTILGRAVGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSL 71 (336)
T ss_pred CCceeEeecCCcceeEEEEECC---------CCCEeeEeeccccccccCCchHHHHHHHHHHHHHHhhcCCCccCcccee
Confidence 4579999999999999999999 99999999988888877788899999999999999999998876 8999
Q ss_pred EEeecCCCCchhHHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCc
Q 020972 99 CLAVSGVNHPTDQQRILNWLRDIFPGNV-RLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177 (319)
Q Consensus 99 gig~pG~~~~~~~~~l~~~L~~~~~~~~-pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl 177 (319)
|++++|.+++..+..|.+++++.||... .++|.||+..+++++..|..+++++++|||+.|..++.||+.-++|+||||
T Consensus 72 gL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVLiaGTgs~crl~~~DGs~~~~ggwg~~ 151 (336)
T KOG1794|consen 72 GLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVLIAGTGSNCRLVNPDGSEKGAGGWGHM 151 (336)
T ss_pred eeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEEEecCCceeEEECCCCCccCCCCCCCc
Confidence 9999999999999999999999998523 499999999988877777889999999999999999999999999999999
Q ss_pred cCCcCChHHHHHHHHHHHHHHhcCCCCC----chhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHHHHHcCCH
Q 020972 178 LGDWGSGYGIAAQALTAVIRAYDGRGPD----TMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDE 253 (319)
Q Consensus 178 ~gd~Gsa~~iG~~~~~~~~~~~dg~~~~----~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~ 253 (319)
+||+||||||++++++.+++..||..+. ..+.+.+.+++++.+...++.+.|+++++.++|.+++.+.+.+++|||
T Consensus 152 iGd~GSaywia~~Avq~vfda~dg~e~~~~~i~~v~~tif~~~~l~d~l~ml~~~Ys~f~k~riA~f~~kla~~ae~Gd~ 231 (336)
T KOG1794|consen 152 IGDGGSAYWIARQAVQMVFDAEDGFENMMDKIKDVKQTIFKHFNLRDRLQMLEHLYSDFDKHRIALFTEKLAEHAEIGDP 231 (336)
T ss_pred cCCCcchhhhhhhhhhheeehhcCcccccchHHHHHHHHHHHcCCCCHHHHHHHHHhcchHHHHHHHHHHHHhhhhccCH
Confidence 9999999999999999999888988765 667788999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHH
Q 020972 254 VANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLK 313 (319)
Q Consensus 254 ~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~ 313 (319)
++.+||++|+..||+.+.+++..+.|.+-.+ ...+||+.|||| +|||+|-..
T Consensus 232 ~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g-------~~l~Iv~vG~V~-~Sw~~l~~G 283 (336)
T KOG1794|consen 232 LSAEIFRNAGETLGRHVVAVLPQLPPTLKKG-------KTLPIVCVGGVF-DSWDLLQEG 283 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhccc-------CcceEEEEcchh-hHHHHHHHH
Confidence 9999999999999999999999999854210 156899999999 999987544
No 2
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-39 Score=291.64 Aligned_cols=268 Identities=30% Similarity=0.427 Sum_probs=227.5
Q ss_pred CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (319)
Q Consensus 20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig 99 (319)
|+.|+||||.|||||++++.|. +|+++.+.+.+|.|....+.+..+.+|.++|.+++.+++.++++|..+.
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~---------~g~vlg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~ 73 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADE---------DGNVLGRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIV 73 (301)
T ss_pred CccEEEEEccCCcceEEEEEcC---------CCcEEEEeccCCceecccchHHHHHHHHHHHHHHHHhcCCCHHHhCcee
Confidence 3469999999999999999998 9999999999999998666699999999999999999999999888887
Q ss_pred EeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCccC
Q 020972 100 LAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILG 179 (319)
Q Consensus 100 ig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~g 179 (319)
.|+.+.....+.. ...++..++..-.+.|+||+..|+.++. +.++++++++|||+++++. .+|+..|.|||||++|
T Consensus 74 agla~ag~~~~~~--~~~~~~~l~~a~~v~v~~Dg~iAl~ga~-~~~~Gii~i~GTGSi~~~~-~gg~~~r~GG~Gf~Ig 149 (301)
T COG2971 74 AGLALAGANVEEA--REELERLLPFAGKVDVENDGLIALRGAL-GDDDGIIVIAGTGSIGYGR-KGGRRERVGGWGFPIG 149 (301)
T ss_pred eeeeccCcchhHH--HHHHHHhcCccceEEEecChHHHHhhcc-CCCCCEEEEecCCeEEEEE-eCCeeEEecCcCcccc
Confidence 7777776543221 1122333443138999999999998764 4579999999999999987 7899999999999999
Q ss_pred CcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCC-ChHHHhchhHHHHHHHHcCCHHHHHH
Q 020972 180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP-SWARIAALVPVVVSCAEAGDEVANKI 258 (319)
Q Consensus 180 d~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~a~~~~~v~~~A~~GD~~A~~i 258 (319)
|+||++|||+.++++.++.+||+.+.++|.+.++.+|+. +.++++++.|+.. ....++++++.|+++|++||+.|++|
T Consensus 150 DegSga~ig~~~L~~~lra~DG~~~~t~L~d~v~~~f~~-d~edlv~~~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~I 228 (301)
T COG2971 150 DEGSGAWIGREALQEALRAFDGRREATPLTDAVMAEFNL-DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRI 228 (301)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHhCC-CHHHHHHHHHhcCCchHHHHHhhHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999996 8999999998643 44568999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972 259 LQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE 316 (319)
Q Consensus 259 l~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~ 316 (319)
+++++.++...+..+. .++. +.++.+-||++ ++.+.|+..+++
T Consensus 229 l~~aa~~i~~~~~~l~-~~~g-------------~~~l~l~GG~~-~~~~~~~~~~~~ 271 (301)
T COG2971 229 LKEAAAYIATLLEALS-IFNG-------------SEKLSLLGGLA-PSYPYYLSLFRR 271 (301)
T ss_pred HHHHHHHHHHHHHHHh-cccC-------------CceEEEecccc-ccchhhHHHHHH
Confidence 9999988888877765 3332 46899999999 676666665554
No 3
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=100.00 E-value=5.7e-33 Score=254.31 Aligned_cols=237 Identities=40% Similarity=0.562 Sum_probs=199.3
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG 104 (319)
||||+|||||+++++|. +|+++.+.+..+.|+...+.+.++++|.+++++++++.+.+..++..+++|++|
T Consensus 1 lGIDgGgTkt~~vl~d~---------~g~il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG 71 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE---------NGNILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAAG 71 (271)
T ss_dssp EEEEECSSEEEEEEEET---------TSEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEEE
T ss_pred CEEeeChheeeeEEEeC---------CCCEEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEee
Confidence 79999999999999999 999999998888887656788999999999999999999988889999999999
Q ss_pred CCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCCh
Q 020972 105 VNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSG 184 (319)
Q Consensus 105 ~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa 184 (319)
+..+.....+...+.. .++.+.||+..++++... +++++++.|||+.++++..+|+..|.|+|||++||+||+
T Consensus 72 ~~~~~~~~~~~~~~~~-----~~v~~~~Da~~al~~~~~--~~giv~I~GTGS~~~~~~~~g~~~r~gG~G~~~gD~GSg 144 (271)
T PF01869_consen 72 YGRAGDEQEFQEEIVR-----SEVIVVNDAAIALYGATA--EDGIVVIAGTGSIAYGRDRDGRVIRFGGWGHCLGDEGSG 144 (271)
T ss_dssp EEETTTTTHHHHHHHH-----HEEEEEEHHHHHHHHHST--SSEEEEEESSSEEEEEEETTSEEEEEEESCTTTTTTTSH
T ss_pred ecCcccccchhhcceE-----EEEEEEHHHHHHhCCCCC--CcEEEEEcCCCceEEEEEcCCcEEEeCCCCCCcCCCCcH
Confidence 8765443334333321 279999999988876554 689999999999999887799999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHHHHHcCCHHHHHHHHHHHH
Q 020972 185 YGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVE 264 (319)
Q Consensus 185 ~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~ 264 (319)
+|||+++++..++..|++.+.+. + .....+.+++.+++.+++++++||+.|.+|++++++
T Consensus 145 ~~ig~~~L~~~~~~~d~~~~~~~--------~------------~~~~~~~~~A~fa~~v~~~a~~gd~~a~~Il~~a~~ 204 (271)
T PF01869_consen 145 YWIGRRALRAVLRELDGRAEPTP--------Y------------AKPASNARIAVFAPTVFEAAQQGDEVARDILAEAAD 204 (271)
T ss_dssp HHHHHHHHHHHHHHHTTSSTTSH--------H------------HHTT-HHHHHCTHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhcCccccCc--------c------------cCCCChhheehhhHHHHHHHHcCCchHHHHHHHHHH
Confidence 99999999999999988776553 0 001234578889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHH
Q 020972 265 ELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVV 310 (319)
Q Consensus 265 ~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~ 310 (319)
+|++.+..++..+++ .+.++++.||++ +++.++
T Consensus 205 ~la~~i~~~~~~~~~------------~~~~v~l~GGv~-~~~~~~ 237 (271)
T PF01869_consen 205 ELAELIKAVLKRLGP------------EKEPVVLSGGVF-KNSPLV 237 (271)
T ss_dssp HHHHHHHHHHHTCTC------------CCCSEEEESGGG-GCHHHH
T ss_pred HHHHHHHHHHHhcCC------------CCCeEEEECCcc-CchHHH
Confidence 999999999998887 223599999999 776543
No 4
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=263.45 Aligned_cols=252 Identities=18% Similarity=0.158 Sum_probs=190.3
Q ss_pred cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972 18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (319)
Q Consensus 18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (319)
+|++.+++|||+|+|+++++++|. +|+++.+.+.++... ...+.+++.|.+.+++++.+.. ...++.+
T Consensus 2 ~~~~~~~lgidIggt~i~~~l~d~---------~g~~l~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~-~~~~~iG 69 (314)
T COG1940 2 NPEAMTVLGIDIGGTKIKVALVDL---------DGEILLRERIPTPTP--DPEEAILEAILALVAELLKQAQ-GRVAIIG 69 (314)
T ss_pred CccCcEEEEEEecCCEEEEEEECC---------CCcEEEEEEEecCCC--CchhHHHHHHHHHHHHHHHhcC-CcCceEE
Confidence 466789999999999999999999 999998888755432 2446889999999999998775 3345666
Q ss_pred EEEeecCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeE
Q 020972 98 VCLAVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAY 160 (319)
Q Consensus 98 Igig~pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~ 160 (319)
||++.||.++... ..+|++.|++.++ +||+|+||+|+++++|. ++.++++|+++|||+|+
T Consensus 70 Igi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~- 146 (314)
T COG1940 70 IGIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLG--LPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGIGG- 146 (314)
T ss_pred EEeccceeccCCcEEeecCCCCccccccHHHHHHHHHC--CCEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccceeE-
Confidence 6666666655421 2579999999998 99999999999999974 24578999999999955
Q ss_pred eEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhch
Q 020972 161 GFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (319)
Q Consensus 161 gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 240 (319)
|++.||+++| |..|.++|+||+.++ .++. |.|+...|++.+. +...+.++.+...........
T Consensus 147 giv~~g~l~~--------G~~g~age~Gh~~v~-----~~g~-c~cG~~GclE~~a---s~~al~~~~~~~~~~~~~~~~ 209 (314)
T COG1940 147 GIIVNGKLLR--------GANGNAGEIGHMVVD-----PDGE-CGCGRRGCLETYA---SGRAILRRAAEALESEAGELT 209 (314)
T ss_pred EEEECCEEee--------cCCCccccccceEEC-----CCCc-cCCCCCCchHHhc---cHHHHHHHHHhhccccccCcC
Confidence 8999999999 666666666666553 2333 4555555555554 334454442111000000023
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEc-chhhhcHHHHHHHHhh
Q 020972 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMEN-ILFLLSWLVVFLKLIE 316 (319)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~G-g~~~~~~~~~~~~~~~ 316 (319)
.+.+++++++||+.|.+++++++++|+.++++++++||| +.||++| |+. ...+.+++.+.+
T Consensus 210 ~~~i~~~a~~gd~~a~~~~~~~~~~la~~ianl~~~~~P--------------~~IvigG~g~~-~~~~~~~~~l~~ 271 (314)
T COG1940 210 AKDIFELAAAGDPLAKEVIERAADYLARGLANLINLLDP--------------EVIVIGGGGVS-ALGDLLLPRLRK 271 (314)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CeEEEECcccc-cchhHHHHHHHH
Confidence 688999999999999999999999999999999999998 4789998 666 788888888765
No 5
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=100.00 E-value=2.2e-33 Score=262.44 Aligned_cols=245 Identities=16% Similarity=0.116 Sum_probs=191.9
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG 104 (319)
||||+|+|+++++++|. +|+++.+.+.+. . .+++++++.+.+.+++++++.+....++.+|||++||
T Consensus 1 lgidig~t~~~~~l~d~---------~g~i~~~~~~~~-~---~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG 67 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDE---------EGNILSKWKVPT-D---TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPG 67 (318)
T ss_pred CEEEeCCCEEEEEEECC---------CCCEEEEEEeCC-C---CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccc
Confidence 68999999999999999 999998877643 2 3678899999999999999887776789999999999
Q ss_pred CCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecCCc
Q 020972 105 VNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTEDGR 167 (319)
Q Consensus 105 ~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~dG~ 167 (319)
+++++. ..+|++.|+++|+ +||+++||++++++++. .+.++++|+++|||++ +|++.||+
T Consensus 68 ~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGiG-~giv~~G~ 144 (318)
T TIGR00744 68 PVNRQRGTVYFAVNLDWKQEPLKEKVEARVG--LPVVVENDANAAALGEYKKGAGKGARDVICITLGTGLG-GGIIINGE 144 (318)
T ss_pred cccCCCCEEEecCCCCCCCCCHHHHHHHHHC--CCEEEechHHHHHHHHHHhcccCCCCcEEEEEeCCccE-EEEEECCE
Confidence 987532 3579999999998 99999999999999874 3567999999999995 57999999
Q ss_pred EEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcC-CCCCchhHHHHHHHcCCCChhhHHHHhc---cCCCh-HH------
Q 020972 168 DARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG-RGPDTMLTSNILSTLELSSPDELIGWTY---VDPSW-AR------ 236 (319)
Q Consensus 168 ~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg-~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~-~~------ 236 (319)
+++ |++|+++|+||..+. .++ ..|.|+-..|++... +...+.+... ..... ..
T Consensus 145 ~~~--------G~~g~agEiGh~~v~-----~~g~~~C~cG~~gclE~~~---s~~al~~~~~~~~~~~~~~~~~~~~~~ 208 (318)
T TIGR00744 145 IRH--------GHNGVGAEIGHIRMV-----PDGRLLCNCGKQGCIETYA---SATGLVRYAKRANAKPERAEVLLALGD 208 (318)
T ss_pred Eee--------cCCCCCcccCceEeC-----CCCCcccCCCCcchHHHHh---CHHHHHHHHHHHhccccccchhhcccc
Confidence 998 777778888876552 344 445555555555544 3334433221 10000 00
Q ss_pred -HhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHh
Q 020972 237 -IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLI 315 (319)
Q Consensus 237 -~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~ 315 (319)
.....+.+++++++||+.|.+++++++++|+.+++++++.||| +.|||+|+++ ...+.|++.+.
T Consensus 209 ~~~~~~~~i~~~~~~gD~~a~~i~~~~~~~L~~~i~~~~~~~dP--------------~~IvlgG~~~-~~~~~~~~~i~ 273 (318)
T TIGR00744 209 GDGISAKHVFVAARQGDPVAVDSYREVARWAGAGLADLASLFNP--------------SAIVLGGGLS-DAGDLLLDPIR 273 (318)
T ss_pred cCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEECChhh-hCcHHHHHHHH
Confidence 0123678999999999999999999999999999999999998 4799999988 67788888776
Q ss_pred h
Q 020972 316 E 316 (319)
Q Consensus 316 ~ 316 (319)
+
T Consensus 274 ~ 274 (318)
T TIGR00744 274 K 274 (318)
T ss_pred H
Confidence 5
No 6
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=100.00 E-value=8.1e-33 Score=257.17 Aligned_cols=245 Identities=16% Similarity=0.083 Sum_probs=183.1
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
+++|||+|+|+++++++|. +|+++.+.+.+.. . .+++++++.+.+.++++..+.+ .+.+|||++
T Consensus 1 ~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~~igia~ 64 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNE---------KLELQWEERVPTP-R--DSYDAFLDAVCELVAEADQRFG----CKGSVGIGI 64 (303)
T ss_pred CeEEEEeCCCcEEEEEECC---------CCcEEEEEEecCC-C--cCHHHHHHHHHHHHHHHHhhcC----CcceEEEeC
Confidence 4799999999999999999 9999988876542 2 4688888999888888765432 345899999
Q ss_pred cCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecC
Q 020972 103 SGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTED 165 (319)
Q Consensus 103 pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~d 165 (319)
||+++++. +++|+++|+++|+ +||+++||+|+++++|. ++.++++|+++|||+| +|++.|
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pV~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGiG-~giv~~ 141 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLG--RDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVG-GGLVFN 141 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHC--CCeEEeccHhHHHHHHhhhccccCCCcEEEEEecCceE-EEEEEC
Confidence 99987532 2589999999997 99999999999999873 2467999999999995 589999
Q ss_pred CcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcC-----CCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhch
Q 020972 166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG-----RGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (319)
Q Consensus 166 G~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg-----~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 240 (319)
|++++ |..|.++|+||..+........+ ..|.|+-..|++...+ ...+.+.+..... .. ..
T Consensus 142 G~l~~--------G~~g~aGEiGH~~v~~~~~~~~g~~~~~~~C~CG~~gclE~~~S---~~al~~~~~~~~~-~~--~~ 207 (303)
T PRK13310 142 GKPIS--------GRSYITGEFGHMRLPVDALTLLGWDAPLRRCGCGQKGCIENYLS---GRGFEWLYQHYYG-EP--LQ 207 (303)
T ss_pred CEEee--------CCCCccccccceeecccccccccccCCCccCCCCCcchHHHhhc---HHHHHHHHHHhcc-CC--CC
Confidence 99998 67777777777655311000001 2445554555555543 3334332211000 00 13
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE 316 (319)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~ 316 (319)
.+.+++++++||+.|.+++++++++||.++++++++||| +.|||+|++. . .+.|++.+.|
T Consensus 208 ~~~l~~~~~~gd~~a~~~~~~~~~~la~~l~n~~~~ldP--------------~~IvlgG~~~-~-~~~~~~~l~~ 267 (303)
T PRK13310 208 APEIIALYYQGDEQAVAHVERYLDLLAICLGNILTIVDP--------------HLVVLGGGLS-N-FDAIYEQLPK 267 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CEEEECCccc-C-hHHHHHHHHH
Confidence 577999999999999999999999999999999999998 4789988887 5 5777777665
No 7
>PRK09557 fructokinase; Reviewed
Probab=100.00 E-value=3.2e-32 Score=252.93 Aligned_cols=245 Identities=18% Similarity=0.098 Sum_probs=182.4
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
|+||||+|+|+++++++|. +|+++.+.+.++. . .+++++++.+.+.++++..+.+ ++.+|||++
T Consensus 1 ~~lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~gIgi~~ 64 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDD---------AGEELFRKRLPTP-R--DDYQQTIEAIATLVDMAEQATG----QRGTVGVGI 64 (301)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCC-C--CCHHHHHHHHHHHHHHHHhhcC----CceEEEecC
Confidence 5899999999999999999 9999988876542 2 3678888888888888765432 467999999
Q ss_pred cCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecC
Q 020972 103 SGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTED 165 (319)
Q Consensus 103 pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~d 165 (319)
||+++++. ..+|++.|+++|+ .||.++||+++++++|. ++.++++|+++|||+| +|++.|
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGiG-~giv~~ 141 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLN--REVRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGCG-AGVAIN 141 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHC--CCEEEccchhHHHHHHHHhcccCCCCcEEEEEEccceE-EEEEEC
Confidence 99987431 3589999999997 89999999999999873 2457899999999995 579999
Q ss_pred CcEEeeCCCCCccCCcCChHHHHHHHHHHHHH-Hh---cCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchh
Q 020972 166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIR-AY---DGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALV 241 (319)
Q Consensus 166 G~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~-~~---dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 241 (319)
|++++ |..|.++|+||..+..... .. ++..|.|+...|++... +...+.+.+..... .. ...
T Consensus 142 G~l~~--------G~~g~aGEiGH~~v~~~~~~~~~~~~g~~c~cG~~GclE~~~---S~~al~~~~~~~~~-~~--~~~ 207 (301)
T PRK09557 142 GRVHI--------GGNGIAGEWGHNPLPWMDEDELRYRNEVPCYCGKQGCIETFI---SGTGFATDYRRLSG-KA--LKG 207 (301)
T ss_pred CEEEe--------cCCCCCcccCceecccccccccccCCCCcCCCCCCCEEeEEE---cHHHHHHHHHHhcc-CC--CCH
Confidence 99998 6666777777765521000 00 34445555444444443 33344443221000 00 125
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972 242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE 316 (319)
Q Consensus 242 ~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~ 316 (319)
+.+++++++||+.|.+++++++++||.+++++++.||| +.|||+|+++ +. +.+++.+.+
T Consensus 208 ~~l~~~~~~gd~~a~~~l~~~~~~La~~l~~l~~~ldP--------------~~IvlgG~~~-~~-~~~~~~l~~ 266 (301)
T PRK09557 208 SEIIRLVEEGDPVAELAFRRYEDRLAKSLAHVINILDP--------------DVIVLGGGMS-NV-DRLYPTLPA 266 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEcCccc-ch-HHHHHHHHH
Confidence 77999999999999999999999999999999999998 4799999988 44 566665543
No 8
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.97 E-value=1e-30 Score=241.65 Aligned_cols=236 Identities=15% Similarity=0.060 Sum_probs=178.2
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p 103 (319)
++|||+|+|+++++++|. +|+++.+.+.+.. .. .+++.+++.+.+.++++.. ++.+|||++|
T Consensus 3 ~lgvdig~~~i~~~l~dl---------~g~i~~~~~~~~~-~~-~~~~~~~~~i~~~i~~~~~-------~~~~igi~~p 64 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGE---------DGQIRQRRQIPTP-AS-QTPEALRQALSALVSPLQA-------QADRVAVAST 64 (291)
T ss_pred EEEEEECCCEEEEEEEcC---------CCcEEEEEEecCC-CC-CCHHHHHHHHHHHHHHhhh-------cCcEEEEeCc
Confidence 799999999999999999 9999988776542 21 3577788888887776642 4678999999
Q ss_pred CCCCch-------------hHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc----CCCCCeEEEEECccceeEeEecCC
Q 020972 104 GVNHPT-------------DQQRILNWLRDIFPGNVRLYVHNDALAALASGT----MGKLHGCVLIAGTGTIAYGFTEDG 166 (319)
Q Consensus 104 G~~~~~-------------~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~----~g~~~~v~v~~GTGigg~gii~dG 166 (319)
|+++.. .+.+|++.|+++|+ +||+++||+|+++++|. .+.++++|+.+|||+| +|++.||
T Consensus 65 G~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~GiG-~giv~~G 141 (291)
T PRK05082 65 GIINDGILTALNPHNLGGLLHFPLVQTLEQLTD--LPTIALNDAQAAAWAEYQALPDDIRNMVFITVSTGVG-GGIVLNG 141 (291)
T ss_pred ccccCCeeEEecCCCCccccCCChHHHHHHHhC--CCEEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCcc-eEEEECC
Confidence 987531 13479999999997 89999999999999874 2457899999999995 4799999
Q ss_pred cEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhchhHHHHH
Q 020972 167 RDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVS 246 (319)
Q Consensus 167 ~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~v~~ 246 (319)
++++ |.+|.++|+||..++ .++..|.|+...|++... +...+.+...... . ....+.+++
T Consensus 142 ~~~~--------G~~g~AGEiGh~~v~-----~~g~~c~CG~~GclE~~~---S~~al~~~~~~~~--~--~~~~~~i~~ 201 (291)
T PRK05082 142 KLLT--------GPGGLAGHIGHTLAD-----PHGPVCGCGRRGCVEAIA---SGRAIAAAAQGWL--A--GCDAKTIFE 201 (291)
T ss_pred EEee--------CCCCccccccceEec-----CCCCCCCCCCcCchhhhc---CHHHHHHHHHHhh--c--CCCHHHHHH
Confidence 9998 666666667766542 245556665555555554 3344443221100 0 012567899
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972 247 CAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE 316 (319)
Q Consensus 247 ~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~ 316 (319)
++++||+.|.+++++++++||.++++++++||| +.|||+|++. . .+.|++.+.+
T Consensus 202 ~~~~gd~~a~~~~~~~~~~la~~l~~l~~~~dp--------------e~IvlgG~~~-~-~~~~~~~i~~ 255 (291)
T PRK05082 202 RAGQGDEQAQALINRSAQAIARLIADLKATLDC--------------QCVVLGGSVG-L-AEGYLELVQA 255 (291)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEcCccc-c-HHHHHHHHHH
Confidence 999999999999999999999999999999998 4899999876 4 4566666544
No 9
>PRK09698 D-allose kinase; Provisional
Probab=99.97 E-value=1.9e-30 Score=241.03 Aligned_cols=240 Identities=13% Similarity=0.102 Sum_probs=176.9
Q ss_pred CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (319)
Q Consensus 19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I 98 (319)
+|..|++|||+|+|+++++++|. +|+++.+.+.++... .+++. ++.+.+.+++++++.+ .++.+|
T Consensus 1 ~~~~~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~~~--~~~~~-~~~l~~~i~~~~~~~~---~~i~gi 65 (302)
T PRK09698 1 KQKNVVLGIDMGGTHIRFCLVDA---------EGEILHCEKKRTAEV--IAPDL-VSGLGEMIDEYLRRFN---ARCHGI 65 (302)
T ss_pred CCccEEEEEEcCCcEEEEEEEcC---------CCCEEEEEEeCCccc--cchHH-HHHHHHHHHHHHHHcC---CCeeEE
Confidence 46789999999999999999999 999999887754322 34454 8889999999988764 479999
Q ss_pred EEeecCCCCchh---------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc----CCCCCeEEEEECcccee
Q 020972 99 CLAVSGVNHPTD---------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT----MGKLHGCVLIAGTGTIA 159 (319)
Q Consensus 99 gig~pG~~~~~~---------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~----~g~~~~v~v~~GTGigg 159 (319)
||++||+++++. ..+|++.|+++++ +||+++||+|++++++. .+.++++|+++|||+|+
T Consensus 66 gia~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~--~pv~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGIG~ 143 (302)
T PRK09698 66 VMGFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLN--CPVFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGMGF 143 (302)
T ss_pred EEeCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhC--CCEEEcchHhHHHHHHHHhcCCCCceEEEEEecCceEE
Confidence 999999976431 2478999999997 99999999999988874 24568999999999955
Q ss_pred EeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhc
Q 020972 160 YGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAA 239 (319)
Q Consensus 160 ~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ 239 (319)
|++.||++++ |..|.++|+||..+. .++..|.|+-..|++... +...+.++....... .
T Consensus 144 -giv~~G~~~~--------G~~g~agEiGh~~v~-----~~~~~C~CG~~gclE~~~---S~~al~~~~~~~~~~----~ 202 (302)
T PRK09698 144 -AVWMNGAPWT--------GAHGVAGELGHIPLG-----DMTQHCGCGNPGCLETNC---SGMALRRWYEQQPRD----Y 202 (302)
T ss_pred -EEEECCEEee--------CCCCCccccCceEee-----CCCcccCCCCccchHhhc---CHHHHHHHHHHhcCC----C
Confidence 7999999998 666666777776542 234445555455555554 334444432211100 1
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE 316 (319)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~ 316 (319)
..+.++++ .+|+ .+++++.++|+.++++++++||| +.|||+|+++ +.++.+++.+.+
T Consensus 203 ~~~~l~~~--~~~~---~~~~~~~~~la~~l~~li~~ldP--------------~~IvlgG~~~-~~~~~~~~~l~~ 259 (302)
T PRK09698 203 PLSDLFVH--AGDH---PFIQSLLENLARAIATSINLFDP--------------DAIILGGGVM-DMPAFPRETLIA 259 (302)
T ss_pred CHHHHHHH--cCCH---HHHHHHHHHHHHHHHHHHHHhCC--------------CEEEEcCccc-cCchhHHHHHHH
Confidence 13455654 3665 47899999999999999999998 4799999988 666666665543
No 10
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.97 E-value=1.5e-30 Score=236.48 Aligned_cols=224 Identities=14% Similarity=0.035 Sum_probs=165.1
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
+++|||+|+|+++++++|. +|+++.+.+.+.. . .+++++++.+.+.++++.... ..+.+|||++
T Consensus 1 ~~lgidiggt~i~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~----~~~~gIgv~~ 64 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDE---------NLQRIWHKRVPTP-R--EDYPQLLQILRDLTEEADTYC----GVQGSVGIGI 64 (256)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCC-C--cCHHHHHHHHHHHHHHHHhhc----CCCceEEEEe
Confidence 4799999999999999999 9999988887542 2 467778888887777664322 2346999999
Q ss_pred cCCCCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecC
Q 020972 103 SGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTED 165 (319)
Q Consensus 103 pG~~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~d 165 (319)
||+++++. ..+|++.|+++|+ .||.++||+|+++++|. ++.++++|+++|||++ +|++.|
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~--~pV~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGiG-~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQ--REVRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVG-GGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHC--CCEEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCeE-EEEEEC
Confidence 99875431 3589999999997 99999999999999874 2457999999999995 589999
Q ss_pred CcEEeeCCCCCccCCcCChHHHHHHHHHHHH-----HHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhch
Q 020972 166 GRDARAAGAGPILGDWGSGYGIAAQALTAVI-----RAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (319)
Q Consensus 166 G~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~-----~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 240 (319)
|+++| |..|.++|+||..+.... ....+..|.|....+++... +...+.+....... .. ..
T Consensus 142 G~l~~--------G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c~cG~~GclE~~~---S~~ai~~~~~~~~~-~~--~~ 207 (256)
T PRK13311 142 GSIVS--------GRNHITGEFGHFRLPVDALDILGADIPRVPCGCGHRGCIENYI---SGRGFEWMYSHFYQ-HT--LP 207 (256)
T ss_pred CEEec--------CCCCCCccceeEEeccCcccccccCCCCCcCCCCCccchhhee---cHHHHHHHHHHhcc-CC--CC
Confidence 99998 666677777776441000 00013345555455555544 33444332211000 00 13
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020972 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSL 279 (319)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~ 279 (319)
.+.+++++++||+.|++++++++++||.++++++++|++
T Consensus 208 ~~~l~~~~~~gd~~a~~~~~~~~~~la~~i~nl~~~~~~ 246 (256)
T PRK13311 208 ATDIIAHYAAGEPKAVAHVERFMDVLAVCLGNLLTMLGS 246 (256)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 678999999999999999999999999999999999997
No 11
>PRK00292 glk glucokinase; Provisional
Probab=99.96 E-value=6.9e-29 Score=232.18 Aligned_cols=238 Identities=14% Similarity=0.003 Sum_probs=155.9
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHH-cCCCccccceEEE
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLK-SGSNRSAVRAVCL 100 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~Igi 100 (319)
.|+||+|+|||+++++++|.. .++++.+.+.++.. .+ .+.+.+.+++++ .+ .++.+|||
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~--------~~~~~~~~~~~~~~-----~~----~~~~~l~~~l~~~~~---~~~~gigI 61 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWA--------NGEIEQIKTYATAD-----YP----SLEDAIRAYLADEHG---VQVRSACF 61 (316)
T ss_pred ceEEEEEcCccceEEEEEecC--------CCceeeeEEEecCC-----CC----CHHHHHHHHHHhccC---CCCceEEE
Confidence 479999999999999999951 45557666654321 12 244455555554 22 26889999
Q ss_pred eecCCCCchh-------HHHHHHHHHhhCCCCce-EEEeCcHHHHHHhhcC---------C------CCCeEEEEECccc
Q 020972 101 AVSGVNHPTD-------QQRILNWLRDIFPGNVR-LYVHNDALAALASGTM---------G------KLHGCVLIAGTGT 157 (319)
Q Consensus 101 g~pG~~~~~~-------~~~l~~~L~~~~~~~~p-v~v~NDa~aa~~g~~~---------g------~~~~v~v~~GTGi 157 (319)
|+||+++... +....+.|+++|+ +| |.++||+|++++++.. + .++++|+++|||+
T Consensus 62 g~pG~vd~~~i~~~n~~w~~~~~~l~~~~~--~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 62 AIAGPVDGDEVRMTNHHWAFSIAAMKQELG--LDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred EEeCcccCCEEEecCCCcccCHHHHHHHhC--CCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 9999986421 2223588999997 85 9999999999998742 2 2679999999999
Q ss_pred eeEeEecCC---cEEeeCCCCCccCCcCChHHHH--HHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhc---
Q 020972 158 IAYGFTEDG---RDARAAGAGPILGDWGSGYGIA--AQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY--- 229 (319)
Q Consensus 158 gg~gii~dG---~~~raGg~Ghl~gd~Gsa~~iG--~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~--- 229 (319)
|+ |+++|| ....+||+||+.-+.....+.. ...+. ..++ .+++..+ +...+.+...
T Consensus 140 G~-giv~~g~~g~~g~agE~GH~~~~~~~~~~~~~~~~~c~-----~~~~-------gclE~~~---Sg~~L~~~~~~~~ 203 (316)
T PRK00292 140 GV-AGLVPVDGRWIVLPGEGGHVDFAPRSEEEAQILQYLRA-----EFGH-------VSAERVL---SGPGLVNLYRAIC 203 (316)
T ss_pred eE-EEEEecCCceEEccCCcccccCCCCChHHHHHHHHHHH-----hcCC-------ceeEeee---cHHhHHHHHHHHH
Confidence 55 788886 2233888898876433222111 00010 0011 0111111 2222222110
Q ss_pred -cCCChHHHhchhHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccc-cEEEEcchhhhc
Q 020972 230 -VDPSWARIAALVPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKV-PLLMENILFLLS 306 (319)
Q Consensus 230 -~~~~~~~~a~~~~~v~~~A~~GD-~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~-~ivl~Gg~~~~~ 306 (319)
....... ....+.|++++++|| +.|++++++++++||.+++++++.||| + .+||+||++.+.
T Consensus 204 ~~~~~~~~-~~~~~~i~~~a~~gdd~~A~~~~~~~~~~lg~~i~~l~~~~~P--------------~~~vvi~Gg~~~~~ 268 (316)
T PRK00292 204 KADGREPE-LLTPADITERALAGSCPLCRRTLSLFCVILGRVAGNLALTLGA--------------RGGVYIAGGIVPRF 268 (316)
T ss_pred hhcCCCcc-cCCHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CceEEEeCchHHhH
Confidence 0000000 013678999999998 999999999999999999999999998 3 699999998667
Q ss_pred HHHHHH
Q 020972 307 WLVVFL 312 (319)
Q Consensus 307 ~~~~~~ 312 (319)
++.+++
T Consensus 269 ~~~~~~ 274 (316)
T PRK00292 269 LEFFKA 274 (316)
T ss_pred Hhhhcc
Confidence 777766
No 12
>PRK12408 glucokinase; Provisional
Probab=99.95 E-value=4.5e-27 Score=221.54 Aligned_cols=240 Identities=18% Similarity=0.082 Sum_probs=153.3
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCC------eEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLP------VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~------il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i 95 (319)
.++|++||||||+|++++|. +++ ++...+.++... +.+.+++++++++ . .++
T Consensus 16 ~~~L~~DIGGT~i~~al~d~---------~g~~~~~~~~~~~~~~~t~~~---------~~~~~~i~~~~~~-~---~~~ 73 (336)
T PRK12408 16 ESFVAADVGGTHVRVALVCA---------SPDAAKPVELLDYRTYRCADY---------PSLAAILADFLAE-C---APV 73 (336)
T ss_pred ccEEEEEcChhhhheeEEec---------cCCccccccccceeEecCCCc---------cCHHHHHHHHHhc-C---CCc
Confidence 45899999999999999997 666 344444332111 1234445555554 1 258
Q ss_pred ceEEEeecCC-CCch-------hHHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhhc-C-------------CC-CCeEEE
Q 020972 96 RAVCLAVSGV-NHPT-------DQQRILNWLRDIFPGNV-RLYVHNDALAALASGT-M-------------GK-LHGCVL 151 (319)
Q Consensus 96 ~~Igig~pG~-~~~~-------~~~~l~~~L~~~~~~~~-pv~v~NDa~aa~~g~~-~-------------g~-~~~v~v 151 (319)
.+||||+||+ ++.. .+..+.+.|++.++ + ||.++||+|++++++. . +. .+.+++
T Consensus 74 ~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~--~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i 151 (336)
T PRK12408 74 RRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLG--LQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVL 151 (336)
T ss_pred CEEEEEecCCceECCEEEecCCCCccCHHHHHHHcC--CCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEE
Confidence 8999999998 3211 12346788999997 7 5999999999999873 2 23 578999
Q ss_pred EECccceeEeEecCCc---EEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHh
Q 020972 152 IAGTGTIAYGFTEDGR---DARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWT 228 (319)
Q Consensus 152 ~~GTGigg~gii~dG~---~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~ 228 (319)
++|||+|+ |+++||+ ...+||+||+.-+..+.-+. ... ...+++.. ..+++... +...+.+.+
T Consensus 152 ~~GTGiGg-givi~g~~g~~~~agE~GH~~~~~~~~~~~--~l~----~~~~~~~~----~~~~E~~~---Sg~gL~~~~ 217 (336)
T PRK12408 152 GPGTGLGA-ALWIPNGGRPVVLPTEAGQAALAAASELEM--QLL----QHLLRTRT----HVPIEHVL---SGPGLLNLY 217 (336)
T ss_pred ECCCcceE-EEEEcCCCceeeecCccccccCCCCCHHHH--HHH----HHHHhhCC----ceeHhhee---cHHHHHHHH
Confidence 99999965 6888876 34489999986533221110 000 00011110 01122222 222222221
Q ss_pred cc---CCChHHHhchhHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhccccccc-EEEEcchh
Q 020972 229 YV---DPSWARIAALVPVVVSCAEAG-DEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVP-LLMENILF 303 (319)
Q Consensus 229 ~~---~~~~~~~a~~~~~v~~~A~~G-D~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~-ivl~Gg~~ 303 (319)
.. ..........++.|+++++++ |+.|++++++++++||..+.++++.||| +. |||+||++
T Consensus 218 ~~~~~~~~~~~~~~~~~~v~~~a~~ggD~~A~~~~~~~~~~La~~i~nl~~~ldP--------------e~GIvIGGGIs 283 (336)
T PRK12408 218 RALCALRGATPVHASPAAITAAALAGDDALAHEALQVFCGFLGSVVGDMALAYGA--------------RGGVYLAGGIL 283 (336)
T ss_pred HHHHhhcCCCcccCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CceEEEECchh
Confidence 10 000000001367899988875 9999999999999999999999999998 47 99999998
Q ss_pred hhcHHHHHHH
Q 020972 304 LLSWLVVFLK 313 (319)
Q Consensus 304 ~~~~~~~~~~ 313 (319)
.+..+.++++
T Consensus 284 ~~~~~~l~~~ 293 (336)
T PRK12408 284 PQIADFLARS 293 (336)
T ss_pred HhHHhhhcCH
Confidence 4436666554
No 13
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.93 E-value=1.1e-24 Score=221.50 Aligned_cols=243 Identities=13% Similarity=-0.014 Sum_probs=158.7
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig 101 (319)
+++||+|+|||+++++++|. +|+++.+.+.++... +.+.+.+++++++.+. .++.+||||
T Consensus 18 ~~~L~iDIGGT~ir~al~~~---------~g~i~~~~~~~t~~~---------~~~~~~i~~~l~~~~~--~~~~~igig 77 (638)
T PRK14101 18 GPRLLADVGGTNARFALETG---------PGEITQIRVYPGADY---------PTLTDAIRKYLKDVKI--GRVNHAAIA 77 (638)
T ss_pred CCEEEEEcCchhheeeeecC---------CCcccceeEEecCCC---------CCHHHHHHHHHHhcCC--CCcceEEEE
Confidence 46999999999999999998 899888877654221 3355666677765542 358899999
Q ss_pred ecCCCCchh--------HHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhh---------c----CCCCCeEEEEECc--cc
Q 020972 102 VSGVNHPTD--------QQRILNWLRDIFPGNV-RLYVHNDALAALASG---------T----MGKLHGCVLIAGT--GT 157 (319)
Q Consensus 102 ~pG~~~~~~--------~~~l~~~L~~~~~~~~-pv~v~NDa~aa~~g~---------~----~g~~~~v~v~~GT--Gi 157 (319)
+||+++... ..++ +.|++.|+ + ||.++||+||+++++ + ++.++++++++|| |+
T Consensus 78 ~pGpVd~~~~~~~nl~w~~~~-~~l~~~~g--~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~lGtGTGl 154 (638)
T PRK14101 78 IANPVDGDQVRMTNHDWSFSI-EATRRALG--FDTLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLLGPGTGL 154 (638)
T ss_pred EecCccCCeeeecCCCcEecH-HHHHHHcC--CCeEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEEECCccc
Confidence 999987531 2355 78999997 6 589999999999983 2 2356788888755 56
Q ss_pred eeEeEe-cCCc-EEeeCCCCCccCCcCChHHHHHHH-HHHHH--HHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCC
Q 020972 158 IAYGFT-EDGR-DARAAGAGPILGDWGSGYGIAAQA-LTAVI--RAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP 232 (319)
Q Consensus 158 gg~gii-~dG~-~~raGg~Ghl~gd~Gsa~~iG~~~-~~~~~--~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 232 (319)
|+++++ .+|+ +++.+++||+.-.....-+..... +.... .+.+...+..++.+........ ....
T Consensus 155 G~a~lv~~~g~~~~~g~E~GH~~~~~~~~~e~~~~~~~~~~~g~~~~E~~~Sg~gL~~~~~~~~~~----------~~~~ 224 (638)
T PRK14101 155 GVSGLIPADDRWIALGSEGGHASFAPQDEREDLVLQYARKKYPHVSFERVCAGPGMEIIYRALAAR----------DKKR 224 (638)
T ss_pred eeeEEEecCCeeEECCCCccccCCCCCCHHHHHHHHHHHHhcCcceeeeecchhhHHHHHHHHHhh----------cCCC
Confidence 533453 7777 778999999865332211111000 00000 0011111222222211111100 0000
Q ss_pred ChHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHH
Q 020972 233 SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFL 312 (319)
Q Consensus 233 ~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~ 312 (319)
.... ..++.|++++++||+.|++++++++++||..+.++++.+|+ |+.|||+||++.+..++|..
T Consensus 225 ~~~~--~~~~~i~~~a~~gd~~A~~~~~~~~~~lg~~~~nl~~~~~~-------------p~~vvigGGIs~~~~~~l~~ 289 (638)
T PRK14101 225 VAAN--VDTAEIVERAHAGDALALEAVECFCAILGTFAGNLALTLGA-------------LGGIYIGGGVVPKLGELFTR 289 (638)
T ss_pred CcCc--CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCcEEEeCcHHHHHHHHcCh
Confidence 0001 13678999999999999999999999999999999999983 25799999998555566553
No 14
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.92 E-value=1.9e-24 Score=202.20 Aligned_cols=244 Identities=15% Similarity=0.006 Sum_probs=150.4
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCC-ccccceEEEeec
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVS 103 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~Igig~p 103 (319)
|.+|+||||++++++|. ++.++.+.+.+++ .. .+.+.+.+++++++.+.. ...+.+++||+|
T Consensus 1 l~~DIGGT~i~~glvd~---------~g~~l~~~~~~~~----~~----~~~l~~~i~~~l~~~~~~~~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEI---------APGEISQAKTYSG----LD----FPSLEAVVRVYLEEHKVELKDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEec---------CCCceeeeEEEec----CC----CCCHHHHHHHHHHhcccccCCCcCeEEEEEe
Confidence 57899999999999998 7766655432211 12 234566666666554321 123567899999
Q ss_pred CCCCch--------hHHHHHHHHHhhCCCCc-eEEEeCcHHHHHHhh--------c-----CCCCCeEEEEECccceeE-
Q 020972 104 GVNHPT--------DQQRILNWLRDIFPGNV-RLYVHNDALAALASG--------T-----MGKLHGCVLIAGTGTIAY- 160 (319)
Q Consensus 104 G~~~~~--------~~~~l~~~L~~~~~~~~-pv~v~NDa~aa~~g~--------~-----~g~~~~v~v~~GTGigg~- 160 (319)
|+++.. ...++. .|++.++ . ||.++||+||+++++ . ++.++++++++|||+|++
T Consensus 64 Gpv~~~~v~~~nl~w~~~~~-~l~~~~g--~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG~G~ 140 (316)
T TIGR00749 64 CPITGDWVAMTNHTWAFSIA-ELKQNLG--FSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTGLGV 140 (316)
T ss_pred CcccCCEEEecCCCCeeCHH-HHHHhcC--CCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCCcee
Confidence 986532 125775 8888887 6 699999999999996 2 345678888886655332
Q ss_pred eEec---CCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHH------hcCCCCCchhHHHHHHHcCCCChhhHHHHhcc
Q 020972 161 GFTE---DGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRA------YDGRGPDTMLTSNILSTLELSSPDELIGWTYV 230 (319)
Q Consensus 161 gii~---dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~------~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~ 230 (319)
++++ ||+++. +||+||+.-.....-+ ...++ .+.+ .+...+.+++.+........... . . ..
T Consensus 141 ~~vi~~~~g~l~~~agE~GH~~~~~~~~~~--~~~~~-~l~~~~~~g~~E~~~Sg~gl~~~~~~~~~~~~~-~--~--~~ 212 (316)
T TIGR00749 141 AHLIHQVDGRWVVLPGEGGHVDFAPNSELE--AIILE-YLRAKIGHVSAERVLSGPGLVNIYEALVKADPE-R--Q--FN 212 (316)
T ss_pred eEEEEcCCCCEEECCCCcccccCCCCCHHH--HHHHH-HHHHhcCCceeeeeecHHHHHHHHHHHHhhcCc-c--c--cc
Confidence 2355 899876 9999999653322111 00000 0011 11112233333332222110000 0 0 00
Q ss_pred CCChHHHhchhHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHH
Q 020972 231 DPSWARIAALVPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLV 309 (319)
Q Consensus 231 ~~~~~~~a~~~~~v~~~A~~GD-~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~ 309 (319)
.....+ ..++.|++++++|| +.|++++++++++||..+++++++|||.| -+++.||++++..+.
T Consensus 213 ~~~~~~--~~~~~I~~aa~~Gdd~~A~~~~~~~~~~lg~~i~nl~~~ldpeg-------------gv~v~GG~~~~~~~~ 277 (316)
T TIGR00749 213 KLPQEN--LKPKDISERALAGSCTDCRRALSLFCVIYGRFAGNLALNLGTRG-------------GVYIAGGIVPRFIEF 277 (316)
T ss_pred cccccc--CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------------cEEEECcHHHhHHhh
Confidence 000011 13678999999997 99999999999999999999999999933 377888887444454
Q ss_pred HH
Q 020972 310 VF 311 (319)
Q Consensus 310 ~~ 311 (319)
+.
T Consensus 278 ~~ 279 (316)
T TIGR00749 278 FK 279 (316)
T ss_pred hC
Confidence 43
No 15
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.86 E-value=3.5e-22 Score=171.50 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=114.4
Q ss_pred EEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecCC
Q 020972 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (319)
Q Consensus 26 GIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG~ 105 (319)
|||+|+|+++++++|. +|+++.+.+.+.. .+++++++.+.+.+++++.+.+.. +|||++||+
T Consensus 1 gidig~~~i~~~l~d~---------~g~ii~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~pG~ 62 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDL---------DGEIIYSESIPTP----TSPEELLDALAELIERLLADYGRS-----GIGISVPGI 62 (179)
T ss_dssp EEEEESSEEEEEEEET---------TSCEEEEEEEEHH----SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEESSE
T ss_pred CEEECCCEEEEEEECC---------CCCEEEEEEEECC----CCHHHHHHHHHHHHHHHHhhcccc-----cEEEecccc
Confidence 7999999999999999 9999999887532 478999999999999999876532 999999999
Q ss_pred CCchh------------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc-----CCCCCeEEEEECccceeEeEecCCcE
Q 020972 106 NHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTEDGRD 168 (319)
Q Consensus 106 ~~~~~------------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~-----~g~~~~v~v~~GTGigg~gii~dG~~ 168 (319)
++.+. ..+|++.|+++|+ +||.++||++++++++. .+.++++|+.+|||+ |++++.||++
T Consensus 63 v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~Gi-G~~ii~~g~i 139 (179)
T PF00480_consen 63 VDSEKGRIISSPNPGWENIPLKEELEERFG--VPVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGI-GAGIIINGKI 139 (179)
T ss_dssp EETTTTEEEECSSGTGTTCEHHHHHHHHHT--SEEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSE-EEEEEETTEE
T ss_pred CcCCCCeEEecCCCCcccCCHHHHhhcccc--eEEEEecCCCcceeehhhcCccCCcceEEEEEeecCC-Ccceeccccc
Confidence 76542 3589999999997 99999999999999874 245799999999999 5579999999
Q ss_pred EeeCCCCCccCCcCChHHHHHHHH
Q 020972 169 ARAAGAGPILGDWGSGYGIAAQAL 192 (319)
Q Consensus 169 ~raGg~Ghl~gd~Gsa~~iG~~~~ 192 (319)
++ |..+.++|+||+.+
T Consensus 140 ~~--------G~~~~aGeigh~~~ 155 (179)
T PF00480_consen 140 YR--------GSNGFAGEIGHMPV 155 (179)
T ss_dssp ET--------TTTS-TTGGGGSBS
T ss_pred cc--------CCCccccceeeeec
Confidence 98 55555566665544
No 16
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=99.80 E-value=7.4e-18 Score=159.06 Aligned_cols=250 Identities=18% Similarity=0.104 Sum_probs=158.2
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHH---HHHHHHHHHcCCCccccceEEE
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE---KVMADALLKSGSNRSAVRAVCL 100 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~---~~i~~~l~~~~~~~~~i~~Igi 100 (319)
+|.|..|+|+||++|++. +++++.+....+.... .+++.+++++. +.|.+++++.++..+++.+| .
T Consensus 2 il~in~Gsts~k~alf~~---------~~~~~~~~~~~~~~~~-~~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av-~ 70 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFED---------ERPLFEETLRHSVEEL-GRFKNVIDQFEFRKQVILQFLEEHGISISKLDAV-V 70 (351)
T ss_pred EEEEecCchhheEEEEeC---------CCceeeeeecCCHHHh-cccccHHHHHHHHHHHHHHHHHHcCCCcccccEE-E
Confidence 789999999999999998 8888777655432221 24456677777 88888888887766789888 7
Q ss_pred eecCCCCchh--------------------------HHHHHHHHHhhCCCCceEEEeCc---------HHHHHHhhc---
Q 020972 101 AVSGVNHPTD--------------------------QQRILNWLRDIFPGNVRLYVHND---------ALAALASGT--- 142 (319)
Q Consensus 101 g~pG~~~~~~--------------------------~~~l~~~L~~~~~~~~pv~v~ND---------a~aa~~g~~--- 142 (319)
+-||+++.-. ..++...+.+.++ +|.++.|+ +++.++.++
T Consensus 71 ~RgG~~~~v~Gg~~~v~~~~~~~l~~~~~~~~~hn~~~~~~~~~~~~~~--~p~~vfDt~fh~~~~~~a~~~alpe~~Rr 148 (351)
T TIGR02707 71 GRGGLLKPIPGGTYLVNEAMLEDLKSGKRGEHASNLGAIIANELADELN--IPAYIVDPVVVDEMEDVARISGLPEIERK 148 (351)
T ss_pred ECCCCCceecceeEEECHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHcC--CCEEEcCChhhhcChHHHHHhccchhhhh
Confidence 8888765311 1234444555565 89889999 776555221
Q ss_pred --------------------CCCC--CeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhc
Q 020972 143 --------------------MGKL--HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYD 200 (319)
Q Consensus 143 --------------------~g~~--~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~d 200 (319)
++.+ +++++.+|||+++ +++.||+++. |..|.++|+++...+ .
T Consensus 149 ygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig~-~ai~~Gk~vd--------gs~G~agEg~~~~tr------~ 213 (351)
T TIGR02707 149 SIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGISV-AAHRKGRVID--------VNNALDGEGPFSPER------S 213 (351)
T ss_pred hchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCcee-eeEECCEEEE--------cCCCCCCcCCcccCc------c
Confidence 2223 8999999999965 6889999987 333333332221100 0
Q ss_pred CCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHH-H-hchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020972 201 GRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWAR-I-AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLS 278 (319)
Q Consensus 201 g~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~ 278 (319)
|..+...... ....+..+..++.+.+.+...... . ....+.|++++++||+.|+.++++++++|++.++++++.|+
T Consensus 214 G~id~~~~~~--~~~~~~~s~~el~~~l~~~sGl~~~~gs~d~reI~~~a~~GD~~A~~a~d~~~~~la~~Ia~l~~~l~ 291 (351)
T TIGR02707 214 GTLPLGDLVD--LCYSGKYTKEEMKKKIVGNGGLVAYLGTNDAREVEKRIEAGDEKAKLILDAMAYQIAKEIGKMAVVLK 291 (351)
T ss_pred CCCCchhHHH--HHhcCCCCHHHHHHHHHhccCcccccCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0000000000 000000112222222221110000 0 12367899999999999999999999999999999999994
Q ss_pred ccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhhc
Q 020972 279 LSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEG 317 (319)
Q Consensus 279 ~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~~ 317 (319)
+ +|+.|||+||+. .+ +.+++++.+.
T Consensus 292 g------------~pD~IV~gGGI~-e~-~~l~~~I~~~ 316 (351)
T TIGR02707 292 G------------KVDAIVLTGGLA-YS-KYFVSEIIKR 316 (351)
T ss_pred C------------CCCEEEEcchhh-cC-HHHHHHHHHH
Confidence 3 236899999998 54 5567777653
No 17
>PTZ00288 glucokinase 1; Provisional
Probab=99.74 E-value=9.7e-17 Score=153.61 Aligned_cols=261 Identities=13% Similarity=0.027 Sum_probs=151.2
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeE-EEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVL-ARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il-~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig 99 (319)
..|++++|||||++|+++++..-. +++... ...+.+.+ ..+..+.++.+.++++++.+... .-..+...+
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~ 95 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFAREVQH-----DDSGVHIIYVRFNVT---KTDIRELLEFFDEVLQKLKKNLS-FIQRVAAGA 95 (405)
T ss_pred CCeEEEEEecCCceEEEEEeccCC-----CCCceeEEEEecccc---cccHHHHHHHHHHHHHHHHhcCc-cccCcCeEE
Confidence 358999999999999999985100 011222 22222201 13456666777777766655321 114566778
Q ss_pred EeecCCCCchhH-------H---HHHHHHHhhCCCCceEEEeCcHHHHHHhhc---------------------------
Q 020972 100 LAVSGVNHPTDQ-------Q---RILNWLRDIFPGNVRLYVHNDALAALASGT--------------------------- 142 (319)
Q Consensus 100 ig~pG~~~~~~~-------~---~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--------------------------- 142 (319)
+++||++....- . .+.+.-...|+. .++.+-||=.+.+++-.
T Consensus 96 iAvAGPV~~~~~~~~~~~~~~~~~lTNlpw~i~~~-~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~ 174 (405)
T PTZ00288 96 ISVPGPVTGGQLAGPFNNLKGIARLTDYPVELFPP-GRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEG 174 (405)
T ss_pred EEEeCceeCCEeeccccccccccccCCCCchhcCC-CeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCC
Confidence 999999743211 0 111111112663 47999999998877621
Q ss_pred ------CCCCCeEEEEECccceeEeEecCCcE-----EeeCCCCCccC--CcCChHHHHHHHHHHHHHHhc--CCCCCch
Q 020972 143 ------MGKLHGCVLIAGTGTIAYGFTEDGRD-----ARAAGAGPILG--DWGSGYGIAAQALTAVIRAYD--GRGPDTM 207 (319)
Q Consensus 143 ------~g~~~~v~v~~GTGigg~gii~dG~~-----~raGg~Ghl~g--d~Gsa~~iG~~~~~~~~~~~d--g~~~~~~ 207 (319)
.+..+.+++..|||+|+ ++++++++ ..+||.||+.- ..+..++++...++...+... ++. +.
T Consensus 175 ~~~g~~~~~~~~~Vlg~GTGLG~-alli~~~l~~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~--~~ 251 (405)
T PTZ00288 175 KPAGSVIGRGRCMVLAPGTGLGS-SLIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGID--ST 251 (405)
T ss_pred CCCcccCCCCCEEEEEeccceeE-EEEECCeecCCcccccccccceeeccCCCCccchhHHHHHHHHhhhcccccc--cc
Confidence 12345699999999966 57777774 34899999866 334445666655443322221 100 00
Q ss_pred hHHHHHHHcCCCChhhHHHH---hccCCChHHHhchhHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 020972 208 LTSNILSTLELSSPDELIGW---TYVDPSWARIAALVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEG 283 (319)
Q Consensus 208 l~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~a~~~~~v~~~A~-~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~ 283 (319)
..-+++..+ +...|... ................++++|. +||+.|.+++++++++||+.+.+++..++|
T Consensus 252 ~~vs~E~v~---SG~GL~~ly~~l~~~~~~~~~~~~~a~ia~~A~~~gD~~A~~al~~f~~~LG~~~~nlal~l~P---- 324 (405)
T PTZ00288 252 VYPIYEDIV---SGRGLEFNYAYEKRGNKPSAPLKEAAEVAKLAKYGSDVAAVKAMKRHYKYLMRLAAEISMQFLP---- 324 (405)
T ss_pred CceeEeEEe---cHHHHHHHHHHHhccCCCccCcCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----
Confidence 000011111 12222211 1100000000112466788777 589999999999999999999999999998
Q ss_pred cchhhcccccccEEEEcchhhhcHHHHH
Q 020972 284 VTYTKILKEKVPLLMENILFLLSWLVVF 311 (319)
Q Consensus 284 ~~~~~~~~~~~~ivl~Gg~~~~~~~~~~ 311 (319)
..|||+||+..+..+.+.
T Consensus 325 ----------~~VvIgGGi~~~~~~~l~ 342 (405)
T PTZ00288 325 ----------LTVVLMGDNIVYNSFFFD 342 (405)
T ss_pred ----------CEEEEECccHHhhHHHHh
Confidence 348898878756655554
No 18
>PRK03011 butyrate kinase; Provisional
Probab=99.66 E-value=7.9e-15 Score=138.80 Aligned_cols=238 Identities=17% Similarity=0.148 Sum_probs=145.8
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC-----CccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-----NHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (319)
.+|.|.-|.|+||+++++. +.. +.+....-+ +.. .=.++ .+-=.+.+.+++++.++..+++.+
T Consensus 3 ~il~inpgststk~a~~~~---------~~~-~~~~~~~h~~~~~~~~~-~~~~q-~~~r~~~i~~~l~~~g~~~~~l~a 70 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED---------EKP-IFEETLRHSAEELEKFK-TIIDQ-YEFRKQAILDFLKEHGIDLSELDA 70 (358)
T ss_pred EEEEEcCCCchheEEEEcC---------Cce-eeeeccccCHHHHhcCC-Cccch-HHHHHHHHHHHHHHcCCChhcceE
Confidence 5999999999999999985 443 443332210 000 00111 111244556677778887778888
Q ss_pred EEEeecCCCCc--hh------------------------HHHHHHHHHhhCCCCceEEEeCc------------------
Q 020972 98 VCLAVSGVNHP--TD------------------------QQRILNWLRDIFPGNVRLYVHND------------------ 133 (319)
Q Consensus 98 Igig~pG~~~~--~~------------------------~~~l~~~L~~~~~~~~pv~v~ND------------------ 133 (319)
| ++-+|..++ .. ...+...+.+.++ +|++|.|+
T Consensus 71 v-~~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~--~p~~v~D~~~~~~~~~~a~~~~lp~i 147 (358)
T PRK03011 71 V-VGRGGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELG--IPAFIVDPVVVDEMEPVARISGLPEI 147 (358)
T ss_pred E-EEcCCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--CCEEEECCcccccCCHHHHHcCCCCc
Confidence 8 788776553 10 1234555656665 89999999
Q ss_pred --------HHHHHHhh----cC----CCCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHH-------HHHH
Q 020972 134 --------ALAALASG----TM----GKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYG-------IAAQ 190 (319)
Q Consensus 134 --------a~aa~~g~----~~----g~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~-------iG~~ 190 (319)
.|..+.+. .. ...+++++.+|||+++ +++.||++++ |..|.++| +|+.
T Consensus 148 ~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGig~-gai~~Gk~id--------gs~g~agEG~~~~~R~G~l 218 (358)
T PRK03011 148 ERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGISV-GAHRKGRVID--------VNNALDGEGPFSPERAGGL 218 (358)
T ss_pred ceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCcee-eEEECCEEEe--------cCCccCCCCCcccCcccCc
Confidence 55444332 12 2348999999999955 6889999988 22222222 3332
Q ss_pred HHHHHH-HHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCCh-HHH-hchhHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 020972 191 ALTAVI-RAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW-ARI-AALVPVVVSCAEAGDEVANKILQDSVEELA 267 (319)
Q Consensus 191 ~~~~~~-~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~-a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg 267 (319)
...... .+.++.. +..++.+.+...... ... ....+.|++++++||+.|+.+++++++.|+
T Consensus 219 ~~~~~~~~~~~g~~----------------s~~~l~~~l~~~~Gl~~~~gs~d~reV~~~a~~GD~~A~~ald~~~~~la 282 (358)
T PRK03011 219 PVGDLVELCFSGKY----------------TKEELKKKLVGKGGLVAYLGTNDAREVEKRIEEGDEKAKLVYEAMAYQIA 282 (358)
T ss_pred CcHHHHHHHhcCCC----------------CHHHHHHHHHhccCcccccCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 111000 0111111 111222221111000 000 123678999999999999999999999999
Q ss_pred HHHHHHHHHh--cccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhh
Q 020972 268 LSVKAVVQRL--SLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIE 316 (319)
Q Consensus 268 ~~la~li~~l--~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~ 316 (319)
+.|.++++.| || +.|||+||+. . ++.+++.+.+
T Consensus 283 k~I~~l~~~L~gdp--------------D~IVlgGGI~-~-~~~l~~~I~~ 317 (358)
T PRK03011 283 KEIGAMAAVLKGKV--------------DAIVLTGGLA-Y-SKRLVERIKE 317 (358)
T ss_pred HHHHHHHHHhCCCC--------------CEEEEeCccc-c-CHHHHHHHHH
Confidence 9999999999 55 5899999998 5 5677777665
No 19
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=99.47 E-value=2.5e-12 Score=119.98 Aligned_cols=242 Identities=16% Similarity=0.043 Sum_probs=136.8
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCC---eEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~---il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig 101 (319)
|.-|||||++|+++++. .+. ++...+.++.+. +. +.+++++++++......++..++++
T Consensus 1 Lv~DIGGTn~Rlal~~~---------~~~~~~~~~~~~~~~~~~-----~s----~~~~l~~~l~~~~~~~~~p~~~~ia 62 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEP---------DGGPLQLIDIRRYPSADF-----PS----FEDALADYLAELDAGGPEPDSACIA 62 (316)
T ss_dssp EEEEEETTEEEEEEEEC---------TCGG-EEEEEEEEEGCCC-----CH----HHHHHHHHHHHTCHHHTCEEEEEEE
T ss_pred CeEEeCcccEEEEEEEc---------CCCCccccccEEEecCCc-----CC----HHHHHHHHHHhcccCCCccceEEEE
Confidence 56799999999999998 444 355555544333 22 3444455555432222356779999
Q ss_pred ecCCCCchh-------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhh---------------cCCCCCeEEEEECcccee
Q 020972 102 VSGVNHPTD-------QQRILNWLRDIFPGNVRLYVHNDALAALASG---------------TMGKLHGCVLIAGTGTIA 159 (319)
Q Consensus 102 ~pG~~~~~~-------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~---------------~~g~~~~v~v~~GTGigg 159 (319)
++|+++... |.--.+.|++.|+. .+|.+-||=.+.+++- .......+++-.|||.|.
T Consensus 63 vAGPV~~~~~~lTN~~W~i~~~~l~~~lg~-~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~ 141 (316)
T PF02685_consen 63 VAGPVRDGKVRLTNLPWTIDADELAQRLGI-PRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGV 141 (316)
T ss_dssp ESS-EETTCEE-SSSCCEEEHHHCHCCCT--TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEE
T ss_pred EecCccCCEEEecCCCccccHHHHHHHhCC-ceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEE
Confidence 999975421 11125667777763 4699999999877751 012345788999999977
Q ss_pred EeEecCCcE--EeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHH
Q 020972 160 YGFTEDGRD--ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237 (319)
Q Consensus 160 ~gii~dG~~--~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (319)
+.++.++.- .-..|.||+.-..-...|. ..++. ++..-++.+ .+..++-.....+.+.+........-
T Consensus 142 a~l~~~~~~~~v~~sEgGH~~fap~~~~e~--~l~~~-l~~~~~~vs-------~E~vlSG~GL~~ly~~l~~~~~~~~~ 211 (316)
T PF02685_consen 142 ALLVPDGDGYYVLPSEGGHVDFAPRTDEEA--ELLRF-LRRRYGRVS-------VERVLSGRGLENLYRFLAGERGAEPP 211 (316)
T ss_dssp EEEEEETTEEEEEEE-GGGSB---SSHHHH--HHHHH-HHHHCTS-B-------HHHCSSHHHHHHHHHHHHCCTT--S-
T ss_pred EEEEecCCceEeCCCccccccCCCCCHHHH--HHHHH-HHHhcCCce-------eEeecchhhHHHHHHHHHhccCCCCC
Confidence 766655543 3478999975443333332 11111 111212211 11111100112222222211100000
Q ss_pred hchhHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHH
Q 020972 238 AALVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWL 308 (319)
Q Consensus 238 a~~~~~v~~~A~-~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~ 308 (319)
...++.|.++|. .+|+.|++.++.+.+.||..+.+++-.+.+.|. |.|.||++.+.-+
T Consensus 212 ~~~~~~I~~~A~~~~d~~a~~al~~f~~~lg~~agdlaL~~~a~gG-------------vyiaGGI~~~~~~ 270 (316)
T PF02685_consen 212 LLSAAEISAAALEGGDPLAREALDLFARILGRVAGDLALTFLARGG-------------VYIAGGIAPRLLP 270 (316)
T ss_dssp ---HHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCE-------------EEEE-TTGGGGHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCee-------------EEEecchhhHHHH
Confidence 123677888886 578999999999999999999999998888553 9999999844433
No 20
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=99.28 E-value=1.5e-11 Score=95.11 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=69.5
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
.+||||+|+|+++++++|. +|+++...+.++. .+.+.+++.+.+.+++ . ++.+|+||+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~---------~g~~~~~~~~~~~----~~~~~~~~~l~~~i~~----~-----~~~~i~Ig~ 59 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE---------TGKLADPLEVIPR----TNKEADAARLKKLIKK----Y-----QPDLIVIGL 59 (99)
T ss_pred cEEEEccCCCeEEEEEECC---------CCCEecCEEEEEe----cCcchHHHHHHHHHHH----h-----CCCEEEEeC
Confidence 3799999999999999998 8999877665432 1334445555554443 2 467999999
Q ss_pred cCCCCch----hHHHHHHHHHhhCCCCceEEEeCcHHHHH
Q 020972 103 SGVNHPT----DQQRILNWLRDIFPGNVRLYVHNDALAAL 138 (319)
Q Consensus 103 pG~~~~~----~~~~l~~~L~~~~~~~~pv~v~NDa~aa~ 138 (319)
||+++.. ...+|++.|+++++ +||.++||+++..
T Consensus 60 pg~v~g~~~~~~~~~l~~~l~~~~~--~pv~~~nDa~st~ 97 (99)
T smart00732 60 PLNMNGTASRETEEAFAELLKERFN--LPVVLVDERLATV 97 (99)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHhhC--CcEEEEeCCcccc
Confidence 9987532 12789999999997 9999999999754
No 21
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.1e-08 Score=92.63 Aligned_cols=242 Identities=19% Similarity=0.110 Sum_probs=141.5
Q ss_pred CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (319)
Q Consensus 19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I 98 (319)
.|....|.=|||||+.|++|+... .+++.......+.++ . .+.+++++++.+.. ...+...
T Consensus 3 ~~~~p~LvgDIGGTnaRfaLv~~a--------~~~~~~~~~~~~~dy-----p----sle~av~~yl~~~~--~~~~~~a 63 (320)
T COG0837 3 AMGYPRLVGDIGGTNARFALVEIA--------PAEPLQAETYACADY-----P----SLEEAVQDYLSEHT--AVAPRSA 63 (320)
T ss_pred CCCCceEEEecCCcceEEEEeccC--------CCCccccceecccCc-----C----CHHHHHHHHHHHhh--ccCccce
Confidence 444555555999999999997752 444444433323222 2 23444555555541 2245567
Q ss_pred EEeecCCCCchh-------HHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc---------------CCCCCeEEEEECcc
Q 020972 99 CLAVSGVNHPTD-------QQRILNWLRDIFPGNVRLYVHNDALAALASGT---------------MGKLHGCVLIAGTG 156 (319)
Q Consensus 99 gig~pG~~~~~~-------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~---------------~g~~~~v~v~~GTG 156 (319)
+++++|+++..+ |.-=.+.+++.++. ..+.+-||=.+-+++.. ....+-+++--|||
T Consensus 64 ~~AiAgPv~gd~v~lTN~~W~~s~~~~r~~Lgl-~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTG 142 (320)
T COG0837 64 CFAIAGPIDGDEVRLTNHDWVFSIARMRAELGL-DHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTG 142 (320)
T ss_pred EEEEecCccCCEEeeecCcccccHHHHHHhcCC-CcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCC
Confidence 899999976432 22113445555653 46999999887666510 11235577888999
Q ss_pred ceeEeEecCCcEEe--eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCCh
Q 020972 157 TIAYGFTEDGRDAR--AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW 234 (319)
Q Consensus 157 igg~gii~dG~~~r--aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 234 (319)
.|.++++.++.-+. .||=||+--...+.-|+ ..++ .++...|+.+. ++.++-.....+.+.+......
T Consensus 143 LGVa~Lv~~~~~w~~lp~EGGHvdf~P~~~~E~--~i~~-~l~~~~GrVS~-------Er~LSG~GL~~iY~al~~~~~~ 212 (320)
T COG0837 143 LGVAGLVPNGGGWIPLPGEGGHVDFAPRSEREF--QILE-YLRARFGRVSA-------ERVLSGPGLVNLYRALCAADGR 212 (320)
T ss_pred cceEEEEecCCeeEeccCCCccccCCCCCHHHH--HHHH-HHHHhcCccch-------hhhcccccHHHHHHHHHHhhCC
Confidence 98888876655343 78888964433443332 2222 12223343321 1222212222232222210000
Q ss_pred HHHhchhHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchh
Q 020972 235 ARIAALVPVVVSCAEA-GDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILF 303 (319)
Q Consensus 235 ~~~a~~~~~v~~~A~~-GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~ 303 (319)
.........|.++|.+ +|+.|.+.++-++.+||....++.-.|..-|. +.|.||++
T Consensus 213 ~~~~~~p~~It~~al~g~d~~a~~tl~lF~~~lG~~AGdlAL~lgarGG-------------VyiaGGI~ 269 (320)
T COG0837 213 LPEDLTPAAITERALAGGDALARETLSLFCAILGRVAGDLALTLGARGG-------------VYIAGGIV 269 (320)
T ss_pred CcccCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhHHhHHHHhhccCc-------------EEEcCCch
Confidence 0000113467777777 89999999999999999999999988887554 88999988
No 22
>PRK13318 pantothenate kinase; Reviewed
Probab=98.84 E-value=3.4e-08 Score=89.90 Aligned_cols=126 Identities=18% Similarity=0.126 Sum_probs=79.5
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee-
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV- 102 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~- 102 (319)
+|+||+|+|++|++++|. ++++.+.+.++... .+++++. +.+.++++..+.+..++.+|+++.
T Consensus 2 iL~IDIGnT~iK~al~d~----------g~i~~~~~~~t~~~--~~~~~~~----~~l~~l~~~~~~~~~~i~~I~issV 65 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG----------GKLVAHWRISTDSR--RTADEYG----VWLKQLLGLSGLDPEDITGIIISSV 65 (258)
T ss_pred EEEEEECCCcEEEEEEEC----------CEEEEEEEEeCCCC--CCHHHHH----HHHHHHHHHcCCCcccCceEEEEEe
Confidence 799999999999999984 77777766644322 3455544 344555565555445788999998
Q ss_pred -cCCCCchhH--------HH-HHHHHHhhCCCCceEEEeCc--------HHHHHHhhcCCCCCeEEEEECccceeEeEe-
Q 020972 103 -SGVNHPTDQ--------QR-ILNWLRDIFPGNVRLYVHND--------ALAALASGTMGKLHGCVLIAGTGTIAYGFT- 163 (319)
Q Consensus 103 -pG~~~~~~~--------~~-l~~~L~~~~~~~~pv~v~ND--------a~aa~~g~~~g~~~~v~v~~GTGigg~gii- 163 (319)
|+..+.... .+ +....+..++ +|+.++|+ +++.+..+... ++.+++.+||++. ..++
T Consensus 66 vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--l~~~y~np~~lG~DR~a~~~aa~~~~~-~~~ivid~GTA~t-~d~v~ 141 (258)
T PRK13318 66 VPSVMHSLERMCRKYFNIEPLVVVGPGVKTG--INIKVDNPKEVGADRIVNAVAAYELYG-GPLIVVDFGTATT-FDVVS 141 (258)
T ss_pred cCchHHHHHHHHHHHhCCCCeEEECCCcCCC--CceecCChhhcchHHHHHHHHHHHHcC-CCEEEEEcCCceE-EEEEc
Confidence 554322110 01 1111122233 78999999 66555444333 3899999999995 4566
Q ss_pred cCCcEE
Q 020972 164 EDGRDA 169 (319)
Q Consensus 164 ~dG~~~ 169 (319)
.+|+..
T Consensus 142 ~~g~~~ 147 (258)
T PRK13318 142 AKGEYL 147 (258)
T ss_pred CCCcEE
Confidence 566543
No 23
>PRK00976 hypothetical protein; Provisional
Probab=98.70 E-value=6.5e-06 Score=76.51 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=48.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcH
Q 020972 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSW 307 (319)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~ 307 (319)
..+.++++|++||+.|+++++++++.|+..++++++.+|| +.|||+||++ ...
T Consensus 225 ~~~eIfeaA~~GD~~A~~aid~~~~~LA~~IAnLi~llDP--------------e~IVLGGGVS-~~~ 277 (326)
T PRK00976 225 TKEELLEAYEKGDEKAKLAIDTLALFVAMEIASLLLLNPE--------------DNVVLAGSVG-EMD 277 (326)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------CEEEEcCccc-cCc
Confidence 3678999999999999999999999999999999999998 5899999998 554
No 24
>PLN02914 hexokinase
Probab=98.67 E-value=3.4e-05 Score=75.93 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=83.6
Q ss_pred cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC---eEEE--EecC-CCCccccCHHHHHHHHHHHHHHHHHHcC
Q 020972 16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLAR--AAAG-CSNHNSVGEDAARETIEKVMADALLKSG 89 (319)
Q Consensus 16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~---il~~--~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (319)
++....+.++++|+|||+.|+.++++ .|+ +... .+.+ |......+.+++++-|++.|.+++++..
T Consensus 89 PtG~E~G~fLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~ 159 (490)
T PLN02914 89 PSGNEKGLFYALDLGGTNFRVLRVQL---------GGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEG 159 (490)
T ss_pred CCCCeeeEEEEEecCCceEEEEEEEe---------cCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhcc
Confidence 33444668999999999999999998 442 2221 1211 2122223568899999999999998764
Q ss_pred C----Cccc--cceEEEeecCCCCc-h----------------hH----HHHHHHHHhh-CCCCceEEEeCcHHHHHHhh
Q 020972 90 S----NRSA--VRAVCLAVSGVNHP-T----------------DQ----QRILNWLRDI-FPGNVRLYVHNDALAALASG 141 (319)
Q Consensus 90 ~----~~~~--i~~Igig~pG~~~~-~----------------~~----~~l~~~L~~~-~~~~~pv~v~NDa~aa~~g~ 141 (319)
. +..+ -.|+.+++|=--.. . .+ .-|.+.|+++ ++ -..+.|-||....+++.
T Consensus 160 ~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~l~-v~v~AivNDTVGTL~a~ 238 (490)
T PLN02914 160 GKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQGLD-MRVSALVNDTVGTLAGA 238 (490)
T ss_pred ccccCCccccccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCC-ceEEEEEEcCHHHHHhh
Confidence 1 1111 24455555532110 0 01 2355555443 22 13577899999887765
Q ss_pred c-CCCCCeEEEEECccceeEe
Q 020972 142 T-MGKLHGCVLIAGTGTIAYG 161 (319)
Q Consensus 142 ~-~g~~~~v~v~~GTGigg~g 161 (319)
. ...+..+-+++|||..++-
T Consensus 239 aY~~~~~~iGlIlGTGtNacY 259 (490)
T PLN02914 239 RYWDDDVMVAVILGTGTNACY 259 (490)
T ss_pred hcCCCCceEEEEEECCeeeEE
Confidence 4 4444678899999998863
No 25
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.56 E-value=1.3e-05 Score=72.60 Aligned_cols=206 Identities=18% Similarity=0.228 Sum_probs=107.9
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
|++|||+|.|++|++++| +|+++.+.+.++.. . ++.+.+.+++++++.+.++.++.+|++
T Consensus 1 ~~lGIDiGtts~K~vl~d----------~g~il~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~~i~~i~~-- 60 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME----------DGKVIGYKWLDTTP----V----IEETARAILEALKEAGIGLEPIDKIVA-- 60 (248)
T ss_pred CEEEEEcChhheEEEEEc----------CCEEEEEEEecCCC----C----HHHHHHHHHHHHHHcCCChhheeEEEE--
Confidence 589999999999999997 47888888763321 2 334456677777777776667776544
Q ss_pred cCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh--cCCCCCeEEEEEC-ccceeEeEecCCcEEeeCCCCCccC
Q 020972 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--TMGKLHGCVLIAG-TGTIAYGFTEDGRDARAAGAGPILG 179 (319)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~--~~g~~~~v~v~~G-TGigg~gii~dG~~~raGg~Ghl~g 179 (319)
.|..... .+ +. .+.. +...+-+.|+ ..+..+. ++-+| ..+ -+-.+.+|++... ..-
T Consensus 61 Tg~~~~~--v~--------~~--~~~~--~ei~~~~~g~~~~~~~~~~-vidiGgqd~-k~i~~~~g~~~~~-----~~n 119 (248)
T TIGR00241 61 TGYGRHK--VG--------FA--DKIV--TEISCHGKGANYLAPEARG-VIDIGGQDS-KVIKIDDGKVDDF-----TMN 119 (248)
T ss_pred ECCCccc--cc--------cc--CCce--EEhhHHHHHHHHHCCCCCE-EEEecCCee-EEEEECCCcEeee-----eec
Confidence 6653221 00 12 2222 2333333332 2333344 44444 444 3334446665410 001
Q ss_pred CcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHh----chh-HHHHHHHHcCCHH
Q 020972 180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA----ALV-PVVVSCAEAGDEV 254 (319)
Q Consensus 180 d~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a----~~~-~~v~~~A~~GD~~ 254 (319)
+..++ | ...+.+.+.+.+++ +.+++-........+..+. -++ ..++....+|.+
T Consensus 120 ~~ca~---G----------------tg~f~e~~a~~l~~-~~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~g~~- 178 (248)
T TIGR00241 120 DKCAA---G----------------TGRFLEVTARRLGV-SVEELGSLAEKADRKAKISSMCTVFAESELISLLAAGVK- 178 (248)
T ss_pred Ccccc---c----------------ccHHHHHHHHHcCC-CHHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHCCCC-
Confidence 11000 0 00122233334443 2222222111100111111 111 345566667764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchh
Q 020972 255 ANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILF 303 (319)
Q Consensus 255 A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~ 303 (319)
..+++....+.++..+..+++.+++ +.++++.||++
T Consensus 179 ~~di~~~~~~~va~~i~~~~~~~~~-------------~~~Vvl~GGva 214 (248)
T TIGR00241 179 KEDILAGVYESIAERVAEMLQRLKI-------------EAPIVFTGGVS 214 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-------------CCCEEEECccc
Confidence 4688888888999999988877765 12799999998
No 26
>PLN02405 hexokinase
Probab=98.48 E-value=6.9e-05 Score=73.97 Aligned_cols=136 Identities=17% Similarity=0.117 Sum_probs=85.1
Q ss_pred cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCC---CeEE----EEecCCCCccccCHHHHHHHHHHHHHHHHHHc
Q 020972 16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPL---PVLA----RAAAGCSNHNSVGEDAARETIEKVMADALLKS 88 (319)
Q Consensus 16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G---~il~----~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~ 88 (319)
++....+.++++|+|||+.|+.++.+ .| .++. ...+|. .....+.+++++-|++.+.+++++.
T Consensus 89 PtG~E~G~flAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~ip~-~~~~gt~~~LFdfIA~~i~~fl~~~ 158 (497)
T PLN02405 89 PSGDEKGLFYALDLGGTNFRVLRVLL---------GGKDGRVVKQEFEEVSIPP-HLMTGSSDALFDFIAAALAKFVATE 158 (497)
T ss_pred CCCCcceeEEEEecCCceEEEEEEEE---------cCCCCceeEEEEEEeecCh-hhccCCHHHHHHHHHHHHHHHHHhc
Confidence 44445678999999999999999998 44 2222 122222 2222467889999999999999876
Q ss_pred CCC----c--cccceEEEeecCCCCc-h----------------hHHHHHHHHHhhC---C-CCceEEEeCcHHHHHHhh
Q 020972 89 GSN----R--SAVRAVCLAVSGVNHP-T----------------DQQRILNWLRDIF---P-GNVRLYVHNDALAALASG 141 (319)
Q Consensus 89 ~~~----~--~~i~~Igig~pG~~~~-~----------------~~~~l~~~L~~~~---~-~~~pv~v~NDa~aa~~g~ 141 (319)
+.. . ..-.|+.+++|=--.. . .+.++.+.|++.+ + .-..+.|-||....+++.
T Consensus 159 ~~~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~ 238 (497)
T PLN02405 159 GEDFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGG 238 (497)
T ss_pred ccccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHh
Confidence 421 1 1224555555532110 0 0123444444332 2 113588999999887765
Q ss_pred c-CCCCCeEEEEECccceeEe
Q 020972 142 T-MGKLHGCVLIAGTGTIAYG 161 (319)
Q Consensus 142 ~-~g~~~~v~v~~GTGigg~g 161 (319)
. ...+..+-+++|||..++-
T Consensus 239 aY~~~~~~iG~IlGTGtNacY 259 (497)
T PLN02405 239 RYYNPDVVAAVILGTGTNAAY 259 (497)
T ss_pred hcCCCCceEEEEEeCCeeeEE
Confidence 4 4445678899999998863
No 27
>PRK13321 pantothenate kinase; Reviewed
Probab=98.48 E-value=4.7e-06 Score=75.82 Aligned_cols=119 Identities=17% Similarity=0.086 Sum_probs=73.9
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
++|+||+|+|+++++++|. + +++.+.+.++... .+.+++...+.+ ++++.+.+.+++.+++++.
T Consensus 1 MiL~IDIGnT~ik~gl~~~---------~-~i~~~~~~~T~~~--~~~~~~~~~l~~----l~~~~~~~~~~i~~i~vss 64 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDG---------D-RLLRSFRLPTDKS--RTSDELGILLLS----LFRHAGLDPEDIRAVVISS 64 (256)
T ss_pred CEEEEEECCCeEEEEEEEC---------C-EEEEEEEEecCCC--CCHHHHHHHHHH----HHHHcCCChhhCCeEEEEe
Confidence 3799999999999999996 4 7777666644322 355665555555 4444454455788888887
Q ss_pred cCCCCchhHHHHHHHHH-------------------hhCCCCceEEEeCc--HHHHHHhhcCCCCCeEEEEECccceeEe
Q 020972 103 SGVNHPTDQQRILNWLR-------------------DIFPGNVRLYVHND--ALAALASGTMGKLHGCVLIAGTGTIAYG 161 (319)
Q Consensus 103 pG~~~~~~~~~l~~~L~-------------------~~~~~~~pv~v~ND--a~aa~~g~~~g~~~~v~v~~GTGigg~g 161 (319)
++ +.....+...++ ..+. .|..+.+| +++.+..+....++.+++.+||=+ ..=
T Consensus 65 --Vv-p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~--~P~~lG~DR~a~~~aa~~~~~~~~~lvid~GTA~-T~d 138 (256)
T PRK13321 65 --VV-PPLNYSLESACKRYFGIKPLFVGPGIKTGLKIRYD--NPREVGADRIVNAVAARRLYPDRNLIVVDFGTAT-TFD 138 (256)
T ss_pred --ec-ccHHHHHHHHHHHHhCCCeEEECCCCCCCcccccC--ChhhccHHHHHHHHHHHHHcCCCCEEEEECCCce-EEE
Confidence 33 322222332222 2233 57788999 554443343333489999999988 443
Q ss_pred Ee
Q 020972 162 FT 163 (319)
Q Consensus 162 ii 163 (319)
++
T Consensus 139 ~v 140 (256)
T PRK13321 139 CV 140 (256)
T ss_pred EE
Confidence 44
No 28
>PTZ00107 hexokinase; Provisional
Probab=98.47 E-value=0.00018 Score=70.61 Aligned_cols=139 Identities=16% Similarity=0.154 Sum_probs=83.2
Q ss_pred cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC-eE--EEEe--cCCCCc--------cccCHHHHHHHHHHHHH
Q 020972 16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP-VL--ARAA--AGCSNH--------NSVGEDAARETIEKVMA 82 (319)
Q Consensus 16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~-il--~~~~--~~~~~~--------~~~~~~~~~~~i~~~i~ 82 (319)
++....+.+|++|+|||+.|++++.+ .|. .. .+.+ .+..-. ...+.+++++.|++.|.
T Consensus 68 PtG~E~G~fLAlDlGGTN~RV~~V~L---------~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~ 138 (464)
T PTZ00107 68 PTGKEKGVYYAIDFGGTNFRAVRVSL---------RGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIK 138 (464)
T ss_pred CCCCccceEEEEecCCceEEEEEEEe---------CCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHH
Confidence 34444678999999999999999998 443 11 1111 111000 01156789999999999
Q ss_pred HHHHHcCC--Cc--cccceEEEeecCCCCc--------------------h--hHHHHHHHHHhhC---C-CCceEEEeC
Q 020972 83 DALLKSGS--NR--SAVRAVCLAVSGVNHP--------------------T--DQQRILNWLRDIF---P-GNVRLYVHN 132 (319)
Q Consensus 83 ~~l~~~~~--~~--~~i~~Igig~pG~~~~--------------------~--~~~~l~~~L~~~~---~-~~~pv~v~N 132 (319)
+++++... .. .--.|+.+++|=--.. . .+.++.+.|++.+ + ....+.|-|
T Consensus 139 ~fl~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivN 218 (464)
T PTZ00107 139 KMMEENGDPEDLNKPVPVGFTFSFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLN 218 (464)
T ss_pred HHHHhccccccccccccceeEEeeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEE
Confidence 99987651 11 1124555555532100 0 0123444444333 2 113688999
Q ss_pred cHHHHHHhhc-CC----CCCeEEEEECccceeEeEec
Q 020972 133 DALAALASGT-MG----KLHGCVLIAGTGTIAYGFTE 164 (319)
Q Consensus 133 Da~aa~~g~~-~g----~~~~v~v~~GTGigg~gii~ 164 (319)
|+.+.+++.. .. .+..+-+++|||..++ ++.
T Consensus 219 DTVgTL~a~ay~~~~~~~~~~iGlIlGTG~Nac-Y~E 254 (464)
T PTZ00107 219 DTVGTLISCAYQKPKNTPPCQVGVIIGTGSNAC-YFE 254 (464)
T ss_pred cCHHHHHHHHhcCcCCCCCceEEEEEeccccce-eee
Confidence 9998887654 33 3457889999999886 443
No 29
>PLN02596 hexokinase-like
Probab=98.40 E-value=0.00038 Score=68.63 Aligned_cols=137 Identities=12% Similarity=0.008 Sum_probs=83.5
Q ss_pred cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC---eEEE--EecC-CCCccccCHHHHHHHHHHHHHHHHHHcC
Q 020972 16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLAR--AAAG-CSNHNSVGEDAARETIEKVMADALLKSG 89 (319)
Q Consensus 16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~---il~~--~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (319)
++....+.+|++|+|||+.|+.++++ .|+ +... ...+ +......+.+++++-|++.|.+++++.+
T Consensus 90 PtG~E~G~yLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 90 PSGDEKGLYYGLNLRGSNFLLLRARL---------GGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred CCCCcceEEEEEeeCCceEEEEEEEE---------cCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 34444678999999999999999998 443 1211 1111 1111123567899999999999997754
Q ss_pred CCc------cccceEEEeecC--------CC-------Cc-hhHHHH----HHHHHhhCCCCceEEEeCcHHHHHHhhc-
Q 020972 90 SNR------SAVRAVCLAVSG--------VN-------HP-TDQQRI----LNWLRDIFPGNVRLYVHNDALAALASGT- 142 (319)
Q Consensus 90 ~~~------~~i~~Igig~pG--------~~-------~~-~~~~~l----~~~L~~~~~~~~pv~v~NDa~aa~~g~~- 142 (319)
... ..-.|+.+++|= .. -. ..+.++ .+.++++-..-..+.|.||....+++.+
T Consensus 161 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~WKgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY 240 (490)
T PLN02596 161 GDEADTPERVKKLGFTVSYPVDQAAASSGSAIKWKSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRY 240 (490)
T ss_pred cccccCcccccccceEEeeeeeecCCCCEEEEEeccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhc
Confidence 321 122456666662 10 00 012344 4444433111136889999998887654
Q ss_pred CCCCCeEEEEECccceeEe
Q 020972 143 MGKLHGCVLIAGTGTIAYG 161 (319)
Q Consensus 143 ~g~~~~v~v~~GTGigg~g 161 (319)
...+..+-+++|||..++-
T Consensus 241 ~~~~~~iG~I~GTGtNacY 259 (490)
T PLN02596 241 YNKDTVAAVTLGMGTNAAY 259 (490)
T ss_pred CCCCeEEEEEEecccceEE
Confidence 3444567799999998863
No 30
>PLN02362 hexokinase
Probab=98.39 E-value=0.00049 Score=68.24 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=85.6
Q ss_pred cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCC---CeE----EEEecCCCCccccCHHHHHHHHHHHHHHHHHHc
Q 020972 16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPL---PVL----ARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88 (319)
Q Consensus 16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G---~il----~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~ 88 (319)
++....+.++++|+|||+.|++++++ .| .++ .+..+|. .......+++++-|++.|.+++++.
T Consensus 89 PtG~E~G~fLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~Ip~-~l~~~~~~eLFd~IA~~i~~fl~~~ 158 (509)
T PLN02362 89 PTGSEIGTYYALDLGGTNFRVLRVQL---------GGQRSSILSQDVERHPIPQ-HLMNSTSEVLFDFIASSLKQFVEKE 158 (509)
T ss_pred CCCCcceeEEEEecCCceEEEEEEEe---------cCCCcceeeceeEEEecCh-hhccCCHHHHHHHHHHHHHHHHHhc
Confidence 44445678999999999999999998 43 222 1233332 2222467889999999999999886
Q ss_pred CCCc------cccceEEEeecCCCCc-h----------------hHHHHHHHHHhhC---C-CCceEEEeCcHHHHHHhh
Q 020972 89 GSNR------SAVRAVCLAVSGVNHP-T----------------DQQRILNWLRDIF---P-GNVRLYVHNDALAALASG 141 (319)
Q Consensus 89 ~~~~------~~i~~Igig~pG~~~~-~----------------~~~~l~~~L~~~~---~-~~~pv~v~NDa~aa~~g~ 141 (319)
.... ..-.|+.+++|=--.. . .+.++.+.|++.+ + .-..+.|-||....+++.
T Consensus 159 ~~~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~ 238 (509)
T PLN02362 159 ENGSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALG 238 (509)
T ss_pred CccccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhh
Confidence 5321 1234555666542110 0 0124444444332 2 113577889999887765
Q ss_pred c-CCCCCeEEEEECccceeEeEec
Q 020972 142 T-MGKLHGCVLIAGTGTIAYGFTE 164 (319)
Q Consensus 142 ~-~g~~~~v~v~~GTGigg~gii~ 164 (319)
. ...+..+-+++|||..++ ++.
T Consensus 239 aY~~~~~~iG~IlGTGtNac-Y~E 261 (509)
T PLN02362 239 HYHDPDTVAAVIIGTGTNAC-YLE 261 (509)
T ss_pred hcCCCCceEEEEEECCccce-Eee
Confidence 4 334456789999999886 543
No 31
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=98.36 E-value=3.5e-07 Score=90.35 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=78.6
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I 98 (319)
||||+|.|++|++++|. +|+++.+.+.+... ..+.+++++++.+.+++++++++++..+.+|.+|
T Consensus 1 lgIDiGtt~ik~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gI 71 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE---------QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGI 71 (481)
T ss_pred CceeecCcceEEEEECC---------CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 68999999999999999 99999887764321 1135788999999999999999988877889999
Q ss_pred EEe--ecCCC--Cchh----------HHHH---HHHHHhhCCCCceEEEeCcHHH
Q 020972 99 CLA--VSGVN--HPTD----------QQRI---LNWLRDIFPGNVRLYVHNDALA 136 (319)
Q Consensus 99 gig--~pG~~--~~~~----------~~~l---~~~L~~~~~~~~pv~v~NDa~a 136 (319)
|++ .||++ +.+. ..+. .+.|++.++ .|++++|+++.
T Consensus 72 gvs~~~~g~v~~d~~g~~l~~~i~W~D~r~~~~~~~l~~~~~--~~~~~~~~g~~ 124 (481)
T TIGR01312 72 GISGQMHGLVLLDANGEVLRPAILWNDTRTAQECEELEAELG--DERVLEITGNL 124 (481)
T ss_pred EEecCCceeEEECCCcCCCccchhhhccchHHHHHHHHHhcC--HhHHHHHHCCC
Confidence 999 99987 5322 1122 666777775 67778888764
No 32
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.28 E-value=3.7e-06 Score=83.66 Aligned_cols=77 Identities=22% Similarity=0.212 Sum_probs=62.1
Q ss_pred CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 020972 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNR 92 (319)
Q Consensus 19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~ 92 (319)
.|..|+||||+|+|++|++++|. +|+++.+.+.+ .....+.+++.+++.+.+.+++++++++.++
T Consensus 2 ~m~~~~lgiD~GTts~Ka~l~d~---------~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~ 72 (498)
T PRK00047 2 MMKKYILALDQGTTSSRAIIFDH---------DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISP 72 (498)
T ss_pred CccCEEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCh
Confidence 45569999999999999999999 99999886532 1122245789999999999999999888777
Q ss_pred cccceEEEeecC
Q 020972 93 SAVRAVCLAVSG 104 (319)
Q Consensus 93 ~~i~~Igig~pG 104 (319)
.+|.+||++.-+
T Consensus 73 ~~I~~Igis~~~ 84 (498)
T PRK00047 73 DQIAAIGITNQR 84 (498)
T ss_pred hHeeEEEEecCc
Confidence 789888876554
No 33
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=98.23 E-value=7.9e-06 Score=73.56 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=60.5
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (319)
|+||||+|.|++|++++|. +|+++...+.+.. ...+.+++++++.+.+++++++++++..+.+|.
T Consensus 1 y~lgiDiGTts~K~~l~d~---------~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~ 71 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE---------DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIK 71 (245)
T ss_dssp EEEEEEECSSEEEEEEEET---------TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEE
T ss_pred CEEEEEEcccceEEEEEeC---------CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeE
Confidence 7999999999999999998 9999987765321 122468999999999999999999988888999
Q ss_pred eEEEeecCC
Q 020972 97 AVCLAVSGV 105 (319)
Q Consensus 97 ~Igig~pG~ 105 (319)
+|++..-+.
T Consensus 72 aI~is~~~~ 80 (245)
T PF00370_consen 72 AIGISGQGH 80 (245)
T ss_dssp EEEEEE-SS
T ss_pred EEEeccccC
Confidence 988876553
No 34
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=98.14 E-value=1.2e-05 Score=80.35 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=61.4
Q ss_pred CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCC--------CCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 020972 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--------SNHNSVGEDAARETIEKVMADALLKSGSN 91 (319)
Q Consensus 20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~--------~~~~~~~~~~~~~~i~~~i~~~l~~~~~~ 91 (319)
||.|+||||+|.|++|++++|. +|+++...+.+. ....+++++++++.+.+.+++++++++.+
T Consensus 1 ~m~~~lgID~GTts~Ka~l~d~---------~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~ 71 (520)
T PRK10939 1 SMSYLMALDAGTGSIRAVIFDL---------NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIP 71 (520)
T ss_pred CCcEEEEEecCCCceEEEEECC---------CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCC
Confidence 3469999999999999999999 999998765431 12224678999999999999999888777
Q ss_pred ccccceEEEeecC
Q 020972 92 RSAVRAVCLAVSG 104 (319)
Q Consensus 92 ~~~i~~Igig~pG 104 (319)
+.+|.+|+++..+
T Consensus 72 ~~~I~aI~~s~~~ 84 (520)
T PRK10939 72 ASDIAAVSATSMR 84 (520)
T ss_pred ccceEEEEEECCc
Confidence 7789998887553
No 35
>PRK04123 ribulokinase; Provisional
Probab=98.09 E-value=1.5e-05 Score=80.24 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=61.1
Q ss_pred CCcEEEEEEcCccceeEEEEe-CccCCCCCCCCCCeEEEEecCCC------------CccccCHHHHHHHHHHHHHHHHH
Q 020972 20 GREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGCS------------NHNSVGEDAARETIEKVMADALL 86 (319)
Q Consensus 20 m~~~~lGIDiGGTk~~~~l~d-~~~~~~~~~~~G~il~~~~~~~~------------~~~~~~~~~~~~~i~~~i~~~l~ 86 (319)
|+.|+||||+|.|++|++++| . +|+++.+.+.+.. ...+++++++++.+.+.++++++
T Consensus 1 ~~~~~lgiD~GTts~Ka~l~d~~---------~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~ 71 (548)
T PRK04123 1 MMAYVIGLDFGTDSVRALLVDCA---------TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLK 71 (548)
T ss_pred CCcEEEEEecCCCceEEEEEECC---------CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999 6 8999887654322 11245788999999999999999
Q ss_pred HcCCCccccceEEEeecC
Q 020972 87 KSGSNRSAVRAVCLAVSG 104 (319)
Q Consensus 87 ~~~~~~~~i~~Igig~pG 104 (319)
+++.++.+|.+||++.-|
T Consensus 72 ~~~~~~~~I~aIgis~~~ 89 (548)
T PRK04123 72 EAGVDPAAVVGIGVDFTG 89 (548)
T ss_pred HcCCChhhEEEEEEeccc
Confidence 888777789888876543
No 36
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=98.08 E-value=1.7e-05 Score=78.80 Aligned_cols=74 Identities=22% Similarity=0.234 Sum_probs=60.6
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i 95 (319)
.|+||||+|+|++|++++|. +|+++...+.+.. ...+.+++.+++.+.+.+++++++++..+++|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~---------~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i 71 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDK---------DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDI 71 (493)
T ss_pred CeEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 37999999999999999999 9999988776321 11135788999999999999999988777789
Q ss_pred ceEEEeecC
Q 020972 96 RAVCLAVSG 104 (319)
Q Consensus 96 ~~Igig~pG 104 (319)
.+||++.-+
T Consensus 72 ~aIgis~~~ 80 (493)
T TIGR01311 72 AAIGITNQR 80 (493)
T ss_pred eEEEEecCc
Confidence 888877654
No 37
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.04 E-value=2.2e-05 Score=78.26 Aligned_cols=76 Identities=22% Similarity=0.207 Sum_probs=62.4
Q ss_pred CCcEEEEEEcCccceeEEEEeCccCCCCCCCC-CCeEEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 020972 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDP-LPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNR 92 (319)
Q Consensus 20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~-G~il~~~~~~~~~------~~~~~~~~~~~~i~~~i~~~l~~~~~~~ 92 (319)
|+.|+||||+|.|.+|++++|. + ++++...+....- ..+.+++++++.+.+++++++++..++.
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~---------~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~ 72 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDE---------DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDP 72 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeC---------CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccCh
Confidence 5679999999999999999999 7 8888877654211 1236899999999999999999988777
Q ss_pred cccceEEEeecC
Q 020972 93 SAVRAVCLAVSG 104 (319)
Q Consensus 93 ~~i~~Igig~pG 104 (319)
.+|.+|+++.-|
T Consensus 73 ~~I~aI~is~~~ 84 (502)
T COG1070 73 DAIAAIGISGQG 84 (502)
T ss_pred hhceEEEEeccc
Confidence 889888776555
No 38
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=98.00 E-value=2.5e-05 Score=78.55 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=59.0
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC--C----CCccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG--C----SNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~--~----~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (319)
++||||+|+|++|++++|. +|+++.+.+.+ . ....+++++++++.+.+.+++++++.+....+|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~ 71 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDS---------TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVK 71 (541)
T ss_pred CEEEEEecCcCEEEEEEcC---------CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 4799999999999999999 99999876532 1 1223468899999999999999998887777899
Q ss_pred eEEEeec
Q 020972 97 AVCLAVS 103 (319)
Q Consensus 97 ~Igig~p 103 (319)
+|||+.+
T Consensus 72 ~Igis~~ 78 (541)
T TIGR01315 72 GIGFDAT 78 (541)
T ss_pred EEEeccc
Confidence 9988764
No 39
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=97.93 E-value=5.1e-05 Score=75.62 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=58.7
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcc--c
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRS--A 94 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~--~ 94 (319)
|+||||+|.|++|++++|. +|+++...+.+.. ...+++++++++.+.+++++++++.+..+. +
T Consensus 3 ~~lgiDiGTts~Ka~l~d~---------~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~ 73 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE---------KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFK 73 (504)
T ss_pred EEEEEecCCCceEEEEECC---------CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCc
Confidence 8999999999999999999 9999987655321 122467889999999999999988776555 7
Q ss_pred cceEEEeecC
Q 020972 95 VRAVCLAVSG 104 (319)
Q Consensus 95 i~~Igig~pG 104 (319)
|.+||+..-+
T Consensus 74 I~aIgis~q~ 83 (504)
T PTZ00294 74 IKAIGITNQR 83 (504)
T ss_pred eEEEEeecCc
Confidence 8888877654
No 40
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=97.91 E-value=0.015 Score=53.19 Aligned_cols=136 Identities=21% Similarity=0.144 Sum_probs=88.7
Q ss_pred CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCcc---ccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVR 96 (319)
Q Consensus 20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (319)
...++++||+|.||+++++.+. +++++.....+..... -.+.+.+...|.++++.+-+..+. ++.
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~---------~~~~~~~~~~~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~---~i~ 89 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDE---------DGQPVAGALEWADVVRDGIVVDFIGAVTIVRRLKATLEEKLGR---ELT 89 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcC---------CCCEEEEEeccccccCCCEEeeHHHHHHHHHHHHHHHHHHhCC---CcC
Confidence 3679999999999999999887 6666665554322110 124566666666665554444444 366
Q ss_pred eEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEee
Q 020972 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARA 171 (319)
Q Consensus 97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~ra 171 (319)
.+.+++|...+......+.+.+++. +. .+..+.++..+++.+- +.++.+++-+|.|.--..++.+|++...
T Consensus 90 ~v~~~vp~~~~~~~~~~~~~~~~~a-Gl-~~~~ii~e~~A~a~~~--~~~~~~vvDIGggtt~i~v~~~g~~~~~ 160 (267)
T PRK15080 90 HAATAIPPGTSEGDPRAIINVVESA-GL-EVTHVLDEPTAAAAVL--GIDNGAVVDIGGGTTGISILKDGKVVYS 160 (267)
T ss_pred eEEEEeCCCCCchhHHHHHHHHHHc-CC-ceEEEechHHHHHHHh--CCCCcEEEEeCCCcEEEEEEECCeEEEE
Confidence 7778899876544445566655554 41 3555899988776642 2235688999988866667778887654
No 41
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=97.87 E-value=5.7e-05 Score=75.88 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=58.7
Q ss_pred EEEEEEcCccceeEEEEe-CccCCCCCCCCCCeEEEEecCC-----------------CCccccCHHHHHHHHHHHHHHH
Q 020972 23 VILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGC-----------------SNHNSVGEDAARETIEKVMADA 84 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d-~~~~~~~~~~~G~il~~~~~~~-----------------~~~~~~~~~~~~~~i~~~i~~~ 84 (319)
|+||||+|.|++|++++| . +|+++...+.+. ....+++++++++.+.++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~ 72 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA---------TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTV 72 (536)
T ss_pred eEEEEecCCCceEEEEEECC---------CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHH
Confidence 799999999999999999 8 899997765422 1123567899999999999999
Q ss_pred HHHcCCCccccceEEEeec
Q 020972 85 LLKSGSNRSAVRAVCLAVS 103 (319)
Q Consensus 85 l~~~~~~~~~i~~Igig~p 103 (319)
+++.+.++.+|.+|+++.-
T Consensus 73 ~~~~~~~~~~I~aI~~s~q 91 (536)
T TIGR01234 73 LAELGVDPADVVGIGVDFT 91 (536)
T ss_pred HHHcCCCHHHEEEEEEecC
Confidence 9998777678988887654
No 42
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=97.86 E-value=6.9e-05 Score=74.71 Aligned_cols=72 Identities=15% Similarity=0.216 Sum_probs=57.8
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (319)
|+||||+|+|++|++++|. +|+++.+.+.+.. ...+.+++++++.+.+.+++++++.+.. .+|.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~ 70 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE---------NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEIL 70 (505)
T ss_pred CEEEEeccccceEEEEEcC---------CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceE
Confidence 5899999999999999999 9999988776321 1223578899999999999999876654 5788
Q ss_pred eEEEeecC
Q 020972 97 AVCLAVSG 104 (319)
Q Consensus 97 ~Igig~pG 104 (319)
+||++.-+
T Consensus 71 ~Igis~~~ 78 (505)
T TIGR01314 71 FVSFSTQM 78 (505)
T ss_pred EEEEeccc
Confidence 88887654
No 43
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.84 E-value=4.3e-05 Score=74.68 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=63.9
Q ss_pred CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 020972 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (319)
Q Consensus 20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 93 (319)
|+.|+||||+|..+-|++++|.. +|+.|.+...| ..+..++++.+.++.++.+++++++++++++.
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~~--------~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~ 72 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDCQ--------TGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPA 72 (544)
T ss_pred CccEEEEEeecCCceeEEEEEcC--------CCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 56799999999999999999982 49888776544 23444578899999999999999999999999
Q ss_pred ccceEEEeec
Q 020972 94 AVRAVCLAVS 103 (319)
Q Consensus 94 ~i~~Igig~p 103 (319)
+|.+||+-..
T Consensus 73 ~V~gIGvDaT 82 (544)
T COG1069 73 DVVGIGVDAT 82 (544)
T ss_pred HeeEEEEcce
Confidence 9999988654
No 44
>PLN02295 glycerol kinase
Probab=97.84 E-value=7.2e-05 Score=74.72 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=57.3
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccc--
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA-- 94 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~-- 94 (319)
|+||||+|.|++|++++|. +|+++.+.+.+.. ...+++++++++.+.+++++++++++..+.+
T Consensus 1 ~vlgID~GTts~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~ 71 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR---------DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVD 71 (512)
T ss_pred CEEEEecCCCceEEEEECC---------CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 5899999999999999999 9999977654321 2234678999999999999999988776666
Q ss_pred --cceEEEeec
Q 020972 95 --VRAVCLAVS 103 (319)
Q Consensus 95 --i~~Igig~p 103 (319)
|.+||+..-
T Consensus 72 ~~i~aIg~s~q 82 (512)
T PLN02295 72 SGLKAIGITNQ 82 (512)
T ss_pred cceEEEEEecC
Confidence 577766543
No 45
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00071 Score=64.65 Aligned_cols=136 Identities=13% Similarity=0.027 Sum_probs=83.1
Q ss_pred cCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEe---cCCCCccccCHHHHHHHHHHHHHHHHHHcCCCc-c
Q 020972 18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA---AGCSNHNSVGEDAARETIEKVMADALLKSGSNR-S 93 (319)
Q Consensus 18 ~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~---~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~-~ 93 (319)
.+..+-+|.||.|||+.|++++.+.+ +|+.-.+.. .|..-..+..+++++..|++-+..++++..... .
T Consensus 71 g~e~g~~LaiD~GGTnlRvc~V~l~g-------~gt~~~~~sks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~~~ 143 (466)
T COG5026 71 GNESGSVLAIDLGGTNLRVCLVVLGG-------DGTFDIEQSKSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSGYG 143 (466)
T ss_pred CCCCCCEEEEecCCceEEEEEEEeCC-------CCCcccccCcccCchhhccCCChHHHHHHHHHHHHHHHHHhCchhcc
Confidence 44467899999999999999998732 344332211 111101112678888888888888887654211 1
Q ss_pred cc--ceEEEeecCCCCc-hh----------------HH----HHHHHHHhhCCCCce---EEEeCcHHHHHHhh-cCCCC
Q 020972 94 AV--RAVCLAVSGVNHP-TD----------------QQ----RILNWLRDIFPGNVR---LYVHNDALAALASG-TMGKL 146 (319)
Q Consensus 94 ~i--~~Igig~pG~~~~-~~----------------~~----~l~~~L~~~~~~~~p---v~v~NDa~aa~~g~-~~g~~ 146 (319)
+- .+..++.|=...+ .+ +. -|.+.|+++. +| +.|-||+...+++. +.+.+
T Consensus 144 ~~l~~gfTFSYP~~q~sin~g~l~rwTKgf~i~e~ig~dvv~~l~e~l~~r~---~pi~v~aviNDttgtlla~~yt~~~ 220 (466)
T COG5026 144 SKLPIGFTFSYPLNQTSINEGQLIRWTKGFDIPEVIGTDVVRLLQEALSARN---LPIRVVAVINDTTGTLLASVYTSSE 220 (466)
T ss_pred CcceeeEEEeccccccccCceeeEeecccCcchhhhhhhHHHHHHHHHHhcC---CceEEEEEecccHHHHHHHhhcCCC
Confidence 12 3444444432111 00 11 3455555543 44 67889999888865 34677
Q ss_pred CeEEEEECccceeEeEe
Q 020972 147 HGCVLIAGTGTIAYGFT 163 (319)
Q Consensus 147 ~~v~v~~GTGigg~gii 163 (319)
+.+-++.|||..++-+.
T Consensus 221 ~~iG~IfGTGtN~~y~e 237 (466)
T COG5026 221 TIIGIIFGTGTNGCYCE 237 (466)
T ss_pred CeEEEEEecCccceEEe
Confidence 89999999999886443
No 46
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=97.80 E-value=0.0054 Score=55.68 Aligned_cols=248 Identities=18% Similarity=0.143 Sum_probs=139.2
Q ss_pred CCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHH------HHHH---HHHHHHHHHHHcCC
Q 020972 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDA------ARET---IEKVMADALLKSGS 90 (319)
Q Consensus 20 m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~------~~~~---i~~~i~~~l~~~~~ 90 (319)
|+.-++-|.=|.|+|+.++++. +-.+. ..... .+.++ +.++ =.+++.+++++.+.
T Consensus 1 ~~yriltINPGststKlaVfe~---------ek~if-e~tlr------hs~eEl~~f~~i~dQ~~fR~~~i~~~i~e~g~ 64 (358)
T COG3426 1 MMYRILTINPGSTSTKLAVFED---------EKEIF-EKTLR------HSLEELEKFKRIPDQFEFRKDAILEFIDEQGY 64 (358)
T ss_pred CceeEEEecCCCccceEEEecC---------chHhh-HHHhh------cCHHHHHHHhhhhHhHhHHHHHHHHHHHHhCC
Confidence 4556899999999999999985 33332 22111 12222 2222 13566777888887
Q ss_pred CccccceEEEeecCCCCc----------hh----------------HHHHHHHHHhhCCCCceEEE------eCcHHHHH
Q 020972 91 NRSAVRAVCLAVSGVNHP----------TD----------------QQRILNWLRDIFPGNVRLYV------HNDALAAL 138 (319)
Q Consensus 91 ~~~~i~~Igig~pG~~~~----------~~----------------~~~l~~~L~~~~~~~~pv~v------~NDa~aa~ 138 (319)
+.+++.++ +|=-|...| +- +.+|...+.+.++ +|.+| |-=...|-
T Consensus 65 ~i~~~dAv-vgRGGLL~pi~gGTY~Vn~~M~~~lk~~~~G~haSnLGaiiA~~ia~~~g--vPayIVDPvvVDEm~~~Ar 141 (358)
T COG3426 65 NISKFDAV-VGRGGLLRPIPGGTYVVNEKMLKDLKNGVQGEHASNLGAIIANRIAKALG--VPAYIVDPVVVDEMEDVAR 141 (358)
T ss_pred CcCCccce-eecCccccccCCceeEeCHHHHHHHHcCCCCcchhhhhHHHHHHHhhhcC--CCeeeeCceehhhcchhhh
Confidence 76677665 344443222 10 1245666666665 55444 33222221
Q ss_pred Hh----------------------hc--CC----CCCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHH
Q 020972 139 AS----------------------GT--MG----KLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQ 190 (319)
Q Consensus 139 ~g----------------------~~--~g----~~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~ 190 (319)
+. .+ .| .-+.++..+|.|+.. +--.+|+.+-.-.- +-++| .+.
T Consensus 142 ~SG~p~i~RkSiFHALN~KAVarr~A~e~gk~yee~n~vVaHmGggiSV-~ah~~GrvIDvnna---ldgeG-Pfs---- 212 (358)
T COG3426 142 FSGIPEIERKSIFHALNQKAVARRAAKEVGKRYEEMNIVVAHMGGGISV-GAHKQGRVIDVNNA---LDGEG-PFS---- 212 (358)
T ss_pred hcCCccchhHHHHHHhhHHHHHHHHHHHhccchhhheEEEEeccCceEE-EEecCCcEEeccCC---CCCCC-CCC----
Confidence 11 00 12 236788889999855 45578988741100 00011 000
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCCh-HHH-hchhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 020972 191 ALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW-ARI-AALVPVVVSCAEAGDEVANKILQDSVEELAL 268 (319)
Q Consensus 191 ~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~-a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~ 268 (319)
....|..+...+.+.|.. +..+.+++.+.+..+... ... ...+..|.+.+++||+.|+.+++-++..+++
T Consensus 213 ------persG~lP~~dlv~lcfS--gk~t~~El~k~i~g~gG~~aylGT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaK 284 (358)
T COG3426 213 ------PERSGTLPTGDLVRLCFS--GKYTEEELLKKITGKGGLVAYLGTNDAKEVERRIEQGDEKAKLAYEAMAYQVAK 284 (358)
T ss_pred ------cccCCCCChHHHHHHHhc--CcccHHHHHHHhhcCCceEEEeccchHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 001223333333332211 112344555544322100 000 0125678888999999999999999999999
Q ss_pred HHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhhc
Q 020972 269 SVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEG 317 (319)
Q Consensus 269 ~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~~ 317 (319)
.|..+...|.= .+..|||-||+. -|+.|.+.+.++
T Consensus 285 eIG~~savL~G------------~vDaIvLTGGiA--~~~~f~~~I~~~ 319 (358)
T COG3426 285 EIGAMSAVLKG------------KVDAIVLTGGIA--YEKLFVDAIEDR 319 (358)
T ss_pred HHHhhhhhcCC------------CCCEEEEecchh--hHHHHHHHHHHH
Confidence 99999887763 467899999997 788888877654
No 47
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=97.78 E-value=0.014 Score=52.45 Aligned_cols=128 Identities=20% Similarity=0.134 Sum_probs=83.9
Q ss_pred EEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccc----cCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS----VGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (319)
Q Consensus 26 GIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~----~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig 101 (319)
|+|+|.|++|+++.+. +++.++....+.. +.. .+.+.+...+..+.+.+-...+. ++..+.++
T Consensus 1 g~dig~~~ik~v~~~~---------~~~~~~~~~~~~~-~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~---~~~~vvis 67 (239)
T TIGR02529 1 GVDLGTANIVIVVLDE---------DGQPVAGVMQFAD-VVRDGIVVDFLGAVEIVRRLKDTLEQKLGI---ELTHAATA 67 (239)
T ss_pred CCCcccceEEEEEEec---------CCCEEEEEecccc-cccCCeEEEhHHHHHHHHHHHHHHHHHhCC---CcCcEEEE
Confidence 6899999999999887 6656666654432 211 24565555555555444333332 46677899
Q ss_pred ecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEe
Q 020972 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 102 ~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~r 170 (319)
+|...+......+.+.++.. +. .++.+.|+..+++++- +..+.+++-+|.|.--..++.+|++..
T Consensus 68 VP~~~~~~~r~a~~~a~~~a-Gl-~~~~li~ep~Aaa~~~--~~~~~~vvDiGggtt~i~i~~~G~i~~ 132 (239)
T TIGR02529 68 IPPGTIEGDPKVIVNVIESA-GI-EVLHVLDEPTAAAAVL--QIKNGAVVDVGGGTTGISILKKGKVIY 132 (239)
T ss_pred ECCCCCcccHHHHHHHHHHc-CC-ceEEEeehHHHHHHHh--cCCCcEEEEeCCCcEEEEEEECCeEEE
Confidence 99976655555566666554 32 5799999999887752 233468889998875555667777654
No 48
>PRK10331 L-fuculokinase; Provisional
Probab=97.74 E-value=0.00015 Score=71.57 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=56.4
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC--------CccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNRS 93 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~--------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 93 (319)
+|+||||+|.|++|++++|. +|+++.+.+.+.. ...+++++++++.+.+.+++++++. ...
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~ 70 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR---------QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TEC 70 (470)
T ss_pred ceEEEEecCCCceEEEEEcC---------CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--Ccc
Confidence 48999999999999999999 9999988766421 1224688899999999999998765 234
Q ss_pred ccceEEEeecC
Q 020972 94 AVRAVCLAVSG 104 (319)
Q Consensus 94 ~i~~Igig~pG 104 (319)
+|.+|++..-+
T Consensus 71 ~I~~I~is~~~ 81 (470)
T PRK10331 71 HIRGITVTTFG 81 (470)
T ss_pred ceEEEEEeccc
Confidence 68888776543
No 49
>PRK13317 pantothenate kinase; Provisional
Probab=97.68 E-value=0.0069 Score=55.71 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=62.2
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig 101 (319)
.+.+|||+|+|.+|++++|. ++++..+... . ...+ .+.+++.. ..++..+ .
T Consensus 2 ~~~iGIDiGstt~K~v~~~~---------~~~~~~~~~~----~--~~~~--------~~~~~l~~----~~~~~~i--~ 52 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEE---------KKQRTFKTEY----S--AEGK--------KVIDWLIN----LQDIEKI--C 52 (277)
T ss_pred CceEEEEeCcccEEEEEEcC---------CCeEEEEeec----c--HHHH--------HHHHHhhc----cCCceEE--E
Confidence 48999999999999999998 7776654311 1 1111 22222321 1234443 3
Q ss_pred ecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh--cC-----CCCCeEEEEECccceeEeEecCCcEEeeCC
Q 020972 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--TM-----GKLHGCVLIAGTGTIAYGFTEDGRDARAAG 173 (319)
Q Consensus 102 ~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~--~~-----g~~~~v~v~~GTGigg~gii~dG~~~raGg 173 (319)
+.|.... .+.+.+ .++ .|+.=.....|...|. .. ...+++++..|||+. .-.+.+++..|.+|
T Consensus 53 ~TG~g~~----~~~~~~--~~~--~~~~~v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~s-i~~~~g~~~~r~~G 122 (277)
T PRK13317 53 LTGGKAG----YLQQLL--NYG--YPIAEFVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGTS-IHYVDGNSQRRVGG 122 (277)
T ss_pred EECcchh----hhhHHH--hcC--CCeeeeHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCceE-EEEEeCCceEEEcc
Confidence 3453321 222222 233 5652233344333332 12 557899999999984 44666666777554
No 50
>PRK15027 xylulokinase; Provisional
Probab=97.68 E-value=0.00017 Score=71.51 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=54.7
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (319)
++||||+|.|++|++++|. +|+++...+.+.. ...+++++++++.+.+++++++++. +.++|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~ 69 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE---------QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVK 69 (484)
T ss_pred CEEEEEecccceEEEEEcC---------CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--Ccccee
Confidence 5899999999999999999 9999987654321 2234678899999999999999875 345788
Q ss_pred eEEEee
Q 020972 97 AVCLAV 102 (319)
Q Consensus 97 ~Igig~ 102 (319)
+||++.
T Consensus 70 aI~is~ 75 (484)
T PRK15027 70 ALGIAG 75 (484)
T ss_pred EEEEec
Confidence 888854
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=97.67 E-value=0.019 Score=53.05 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=44.7
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
+++|||+|.|.+|++|+|. ++++.....++ .. ++. +...+++++++++.+...+++..++ .
T Consensus 33 ~~~GIDiGStt~K~Vlld~----------~~i~~~~~~~t-g~---~~~---~~a~~~l~~~l~~~g~~~~~v~~~~--~ 93 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCD----------GELYGYNSMRT-GN---NSP---DSAKNALQGIMDKIGMKLEDINYVV--G 93 (293)
T ss_pred EEEEEEeCchhEEEEEEeC----------CEEEEEEeecC-CC---CHH---HHHHHHHHHHHHHcCCcccceEEEE--E
Confidence 7999999999999999985 46766655432 21 233 2355666777788877656677654 4
Q ss_pred cCCC
Q 020972 103 SGVN 106 (319)
Q Consensus 103 pG~~ 106 (319)
.|..
T Consensus 94 TGyG 97 (293)
T TIGR03192 94 TGYG 97 (293)
T ss_pred ECcc
Confidence 6665
No 52
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=97.59 E-value=0.00033 Score=69.18 Aligned_cols=71 Identities=18% Similarity=0.207 Sum_probs=55.5
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC--------CccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~--------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (319)
++||||+|.|++|++++|. +|+++...+.+.. ...+++++++++.+.+++++++.+ ..+.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~---------~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~~ 70 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR---------QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEKH 70 (465)
T ss_pred eEEEEecCCCcEEEEEEcC---------CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChhc
Confidence 7999999999999999999 9999987665311 122468889999999999999864 34456
Q ss_pred cceEEEeecC
Q 020972 95 VRAVCLAVSG 104 (319)
Q Consensus 95 i~~Igig~pG 104 (319)
|.+|++..-|
T Consensus 71 I~aI~~s~~~ 80 (465)
T TIGR02628 71 IRGIAVTTFG 80 (465)
T ss_pred eEEEEEeccc
Confidence 8888876543
No 53
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=97.54 E-value=0.001 Score=58.48 Aligned_cols=117 Identities=14% Similarity=0.058 Sum_probs=73.1
Q ss_pred cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCC-eE--EEEecC-CCCccccCHHHHHHHHHHHHHHHHHHcCC-
Q 020972 16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLP-VL--ARAAAG-CSNHNSVGEDAARETIEKVMADALLKSGS- 90 (319)
Q Consensus 16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~-il--~~~~~~-~~~~~~~~~~~~~~~i~~~i~~~l~~~~~- 90 (319)
++....+.+|+||+|||+.|++++.+ .|. .. .+.... |........+++.+-|++.+.+++++...
T Consensus 57 P~G~E~G~~LalDlGGTnlRv~~V~L---------~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~ 127 (206)
T PF00349_consen 57 PTGNEKGDFLALDLGGTNLRVALVEL---------SGNGKVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE 127 (206)
T ss_dssp TTSTTEEEEEEEEESSSSEEEEEEEE---------ESSSEEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCceEEEEeecCcEEEEEEEEE---------cCCCCceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc
Confidence 44555678999999999999999998 444 22 112111 11111134588899999999999998765
Q ss_pred CccccceEEEeecCCCCchh-----------------------HHHHHHHHHhhCCC-CceEEEeCcHHHHHHhh
Q 020972 91 NRSAVRAVCLAVSGVNHPTD-----------------------QQRILNWLRDIFPG-NVRLYVHNDALAALASG 141 (319)
Q Consensus 91 ~~~~i~~Igig~pG~~~~~~-----------------------~~~l~~~L~~~~~~-~~pv~v~NDa~aa~~g~ 141 (319)
+..+..-+|+.++=|.+... ...|.+.|+++--. ...+.|-||+.+.+++.
T Consensus 128 ~~~~~l~lGfTFSFP~~q~~~~~g~li~wtKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~ 202 (206)
T PF00349_consen 128 SRDEKLPLGFTFSFPVEQTSLNSGTLIRWTKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAG 202 (206)
T ss_dssp STTSEEEEEEEEESSEEESSTTEEEE----TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHH
T ss_pred ccccccceEEEEEEEEEeccCCCeEEEEeeccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhh
Confidence 23345556666666643210 12456666555311 13588999999887764
No 54
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=97.52 E-value=0.00029 Score=68.16 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=61.9
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (319)
+.|++.||-|.|++|+.++|. +|+++.+.+.+ .....+.+|.++++.....+++++.++++.+.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~---------~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~ 74 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE---------DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGE 74 (499)
T ss_pred ccEEEEEecCCcceeEEEECC---------CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 469999999999999999999 99999876543 223446789999999999999999999999889
Q ss_pred cceEEEe
Q 020972 95 VRAVCLA 101 (319)
Q Consensus 95 i~~Igig 101 (319)
|.+|||.
T Consensus 75 iaaIGIT 81 (499)
T COG0554 75 IAAIGIT 81 (499)
T ss_pred eEEEEee
Confidence 9998875
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.41 E-value=0.071 Score=51.28 Aligned_cols=65 Identities=25% Similarity=0.338 Sum_probs=47.3
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig 101 (319)
++++|||+|+|.||++++|. ++++.....++. .+ .+.+.+++++++++.++..+++..++
T Consensus 144 g~~lGIDiGSTttK~Vl~dd----------~~Ii~~~~~~t~-----~~---~~~a~~~l~~~l~~~Gl~~~di~~i~-- 203 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVMED----------NEVIGTGWVPTT-----KV---IESAEEAVERALEEAGVSLEDVEAIG-- 203 (404)
T ss_pred CEEEEEEcChhheeeEEEcC----------CeEEEEEEeecc-----cH---HHHHHHHHHHHHHHcCCCccceeEEE--
Confidence 48999999999999999974 588777655331 11 34567778888888887766776654
Q ss_pred ecCCC
Q 020972 102 VSGVN 106 (319)
Q Consensus 102 ~pG~~ 106 (319)
+.|..
T Consensus 204 ~TGyG 208 (404)
T TIGR03286 204 TTGYG 208 (404)
T ss_pred eeeec
Confidence 46654
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=97.39 E-value=0.097 Score=49.58 Aligned_cols=66 Identities=24% Similarity=0.297 Sum_probs=44.7
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig 101 (319)
.++||||.|.|.||++|++. +..++..... +++. .+. ..+++++++++.+....+|.+ ++
T Consensus 135 ~~~LGID~GSTtTK~VLm~d---------~~~I~~~~~~-~t~g---~p~-----~~~~l~~~le~l~~~~~~I~~--~~ 194 (396)
T COG1924 135 MYTLGIDSGSTTTKAVLMED---------GKEILYGFYV-STKG---RPI-----AEKALKEALEELGEKLEEILG--LG 194 (396)
T ss_pred cEEEEEecCCcceeEEEEeC---------CCeEEEEEEE-cCCC---Chh-----HHHHHHHHHHHcccChheeee--ee
Confidence 48999999999999999997 5556555553 3222 222 255666777777766556765 56
Q ss_pred ecCCCC
Q 020972 102 VSGVNH 107 (319)
Q Consensus 102 ~pG~~~ 107 (319)
+.|...
T Consensus 195 ~TGYGR 200 (396)
T COG1924 195 VTGYGR 200 (396)
T ss_pred eecccH
Confidence 677653
No 57
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=97.38 E-value=0.084 Score=50.94 Aligned_cols=142 Identities=18% Similarity=0.122 Sum_probs=78.0
Q ss_pred CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972 146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (319)
Q Consensus 146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~ 225 (319)
.+.|+.-+|.|+..+ -+.+|+.+-. -.|.. ..+|-- . ....|..++..+.. +.+..+. +.+++.
T Consensus 199 ~~lIvaHLG~G~Sv~-A~~~GrsvDt-smG~t-pleGl~--m---------~tRsG~ldp~~~~~-l~~~~~~-s~~e~~ 262 (388)
T PF00871_consen 199 LNLIVAHLGSGASVC-AIKNGRSVDT-SMGFT-PLEGLM--M---------GTRSGDLDPGVLLY-LCRSGGM-SADELE 262 (388)
T ss_dssp -EEEEEEESSSEEEE-EEETTEEEEE-SBTSS-TTSSS-------------SSB--S--THHHHH-HHHHCT---HHHHH
T ss_pred cCEEEEEeCCCcEEE-EEECCEEEEe-cCCCC-CCCCCC--C---------CCCCCCCChHHHHH-HHHhcCC-CHHHHH
Confidence 478999999998665 5589997641 11110 001100 0 00111111222222 2222221 344454
Q ss_pred HHhccCCCh---HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972 226 GWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL 302 (319)
Q Consensus 226 ~~~~~~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~ 302 (319)
..++.+... ..+....+.|.+.+.+||+.|+.+++-++..+++.|..+...|+ |. -..||+.||+
T Consensus 263 ~~l~~~sGL~g~sG~s~D~r~i~~~~~~gd~~A~la~d~~~y~i~k~Ig~~~a~l~--G~----------vDaivfTGGi 330 (388)
T PF00871_consen 263 RLLNKESGLLGLSGISNDMREIEARIEEGDERAKLALDAFAYQIAKYIGAYAAVLE--GG----------VDAIVFTGGI 330 (388)
T ss_dssp HHHHHSSHHHHHHSSSS-HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHT--SS-----------SEEEEEHHH
T ss_pred HHHHhccCcEeccCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhc--cC----------CCEEEEcccc
Confidence 444432211 11112367888899999999999999999999999999999885 11 2479999999
Q ss_pred hhhcHHHHHHHHhh
Q 020972 303 FLLSWLVVFLKLIE 316 (319)
Q Consensus 303 ~~~~~~~~~~~~~~ 316 (319)
. .+-.++...+++
T Consensus 331 g-e~~~~vr~~~~~ 343 (388)
T PF00871_consen 331 G-ENSALVRERICR 343 (388)
T ss_dssp H-HHTHHHHHHHHC
T ss_pred c-cchHHHHHHHHh
Confidence 8 443444444443
No 58
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=97.37 E-value=0.00049 Score=59.04 Aligned_cols=63 Identities=25% Similarity=0.265 Sum_probs=47.7
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
||||+|||+|.++++|. +..++...+.+++. +....-|.+++++++.+.+.++++|..|-+|.
T Consensus 2 igIDvGGT~TD~v~~d~---------~~~~~~~~K~~Tt~------~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gT 64 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDE---------DTGVVATAKVPTTP------DDPAEGILEALDALLEESGIDPSDIDRVRHGT 64 (176)
T ss_pred eeEecCCCcEEEEEEeC---------CCCEEEEEEeCCCC------cCHHHHHHHHHHhhhcccCCChhhCcEEEecc
Confidence 79999999999999998 66788888876542 23344567777777777776677888777766
No 59
>PLN02669 xylulokinase
Probab=97.29 E-value=0.00099 Score=67.28 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=55.5
Q ss_pred CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC------C---ccccCHH----------HHHHHHHH
Q 020972 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------N---HNSVGED----------AARETIEK 79 (319)
Q Consensus 19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~------~---~~~~~~~----------~~~~~i~~ 79 (319)
|...|+||||+|.|++|++++|. +|+++...+.+.. . ..+.+++ .+++.+..
T Consensus 5 ~~~~~~LGiD~GT~s~Ka~l~d~---------~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~ 75 (556)
T PLN02669 5 PEDSLFLGFDSSTQSLKATVLDS---------NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDL 75 (556)
T ss_pred CCCCeEEEEecccCCeEEEEEcC---------CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHH
Confidence 45569999999999999999999 9999988766421 0 1123444 56799999
Q ss_pred HHHHHHHHcCCCccccceEEEe
Q 020972 80 VMADALLKSGSNRSAVRAVCLA 101 (319)
Q Consensus 80 ~i~~~l~~~~~~~~~i~~Igig 101 (319)
+++++. +.+.+.++|.+|+++
T Consensus 76 ~l~~l~-~~~~~~~~I~aIs~s 96 (556)
T PLN02669 76 LLQKLA-KEKFPFHKVVAISGS 96 (556)
T ss_pred HHHHHH-HcCCChhhEEEEEec
Confidence 999877 556666789888876
No 60
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=97.28 E-value=0.16 Score=47.44 Aligned_cols=130 Identities=15% Similarity=0.096 Sum_probs=81.0
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC---------CccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---------NHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~---------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i 95 (319)
|+||--...+.++++|. +++++...+.... .+ +.....-.+.|...+++++++++.++.+|
T Consensus 1 LaidTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p-~~~~~~H~~~l~~~i~~~l~~~~~~~~di 70 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDE---------EGNVLANIKISQIPLHAKYGGVVP-EEASRHHAENIPPLLERALIESNVDKSEI 70 (305)
T ss_pred CEEecCccceEEEEEEC---------CCcEEEEEEecccccccccCCcCc-chhHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 57888888889999986 5788876543210 11 12234446778889999999999999999
Q ss_pred ceEEEee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC--CCCeEEEEECccceeEeEecCC
Q 020972 96 RAVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG--KLHGCVLIAGTGTIAYGFTEDG 166 (319)
Q Consensus 96 ~~Igig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--~g--~~~~v~v~~GTGigg~gii~dG 166 (319)
..|+++. ||.... .-+....+-|...++ +|+.--|.-.+-++... .+ ..+++++.+.-|..-..+..++
T Consensus 71 d~iav~~GPG~~tglrvg~~~Ak~la~~~~--~p~~~v~hl~~ha~~a~~~s~~~~~~~l~l~vsGG~t~l~~~~~~ 145 (305)
T TIGR00329 71 DLIAYTQGPGLGGSLRVGATFARSLALSLD--KPLIGVNHLLGHIYAPRLDTNILQFPFVSLLVSGGHTQIIAVKGI 145 (305)
T ss_pred CEEEEecCCCchhhHHHHHHHHHHHHHHhC--CCEeecccHHHHHHHhhhhcCCCCCCcEEEEEcCCceEEEEEeCC
Confidence 9998875 664322 123455667777776 89887777765443322 13 3445544443265333333333
No 61
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.23 E-value=0.1 Score=47.48 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=44.2
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCC---eEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~---il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig 99 (319)
+++|||+|.|.+|++++|. +++ ++.....+ ++. .++. +...+++++++++.+....++.+++
T Consensus 2 ~~~GIDiGStttK~Vlid~---------~~~~~~~~~~~~~~-~~~--~~~~---~~~~~~l~~~~~~~g~~~~~i~~i~ 66 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV---------DGDKEECLAKRNDR-IRQ--RDPF---KLAEDAYDDLLEEAGLAAADVAYCA 66 (262)
T ss_pred eEEEEEcCcccEEEEEEec---------CCCeeEEEEEEEec-CCC--CCHH---HHHHHHHHHHHHHcCCChhheEEEE
Confidence 6899999999999999996 454 23333222 222 2332 3356677778888887666777654
Q ss_pred EeecCCCC
Q 020972 100 LAVSGVNH 107 (319)
Q Consensus 100 ig~pG~~~ 107 (319)
..|+..
T Consensus 67 --~TGYGR 72 (262)
T TIGR02261 67 --TTGEGE 72 (262)
T ss_pred --EECCch
Confidence 477643
No 62
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.98 E-value=0.15 Score=46.91 Aligned_cols=117 Identities=16% Similarity=0.127 Sum_probs=65.3
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p 103 (319)
.+|||+|||-+|++..|. ++++..... ++ ...+++++-+.+. .... +.+.. +.+.
T Consensus 2 ~iGiDiGgT~~Kiv~~~~---------~~~~~f~~~-~~-----~~~~~~~~~l~~~----~~~~----~~~~~--i~~T 56 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEP---------KGRRKFKTF-ET-----TNIDKFIEWLKNQ----IHRH----SRITT--LCAT 56 (279)
T ss_pred eEEEEeCcceEEEEEEcC---------CCcEEEEEe-ec-----ccHHHHHHHHHHH----HHhh----cCceE--EEEE
Confidence 589999999999999988 788776543 33 2344544444433 2221 12333 3444
Q ss_pred CCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhh--c------CCCCCeEEEEECccceeEeEecCC-cEEeeCC
Q 020972 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--T------MGKLHGCVLIAGTGTIAYGFTEDG-RDARAAG 173 (319)
Q Consensus 104 G~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~--~------~g~~~~v~v~~GTGigg~gii~dG-~~~raGg 173 (319)
|-. ...+.+.+...++ +++.-.....+...|. . ....+.+++.+|||+ .. +..++ +..|.||
T Consensus 57 GgG----a~k~~~~~~~~~~--v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsGv-Si-~~v~~~~~~Rv~G 127 (279)
T TIGR00555 57 GGG----AFKFAELIYESAG--IQLHKFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTGT-SI-LYVDGDNYERVGG 127 (279)
T ss_pred CCc----HHHHHHHhccccC--CcccchhHHHHHHHHHHHHhhcccCCCCCceEEEEecCCe-EE-EEEcCccEEEEcC
Confidence 432 3456666666664 4443333444433331 1 123467899999998 43 33344 5556554
No 63
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.024 Score=55.49 Aligned_cols=132 Identities=18% Similarity=0.039 Sum_probs=82.6
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCC---eEEE---EecCCCCccccCHHHHHHHHHHHHHHHHHHcCCC-cc
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLAR---AAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RS 93 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~---il~~---~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~-~~ 93 (319)
++-++++|.|||+.|+.++.+ .|. +... ...| ......+.++..+.|.+.+.+++.+.+.. ..
T Consensus 85 ~G~~lalDLGGTn~Rv~~v~L---------~g~~~~~~~~~~~~~ip-~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~~~ 154 (474)
T KOG1369|consen 85 KGKFLALDLGGTNFRVLLVKL---------GGGRTSVRMYNKIYAIP-EEIMQGTGEELFDFIARCLADFLDKMGLKGAS 154 (474)
T ss_pred CCCEEEEecCCCceEEEEEEe---------cCCcccceeeeeeEecC-HHHHcCchHHHHHHHHHHHHHHHHHhcccccc
Confidence 568999999999999999988 343 2221 2222 22222356788899999999998876543 12
Q ss_pred -ccceEEEeecCCCC---ch------h--------H----HHHHHHHHhhCCC-CceEEEeCcHHHHHHhh-cCCCCCeE
Q 020972 94 -AVRAVCLAVSGVNH---PT------D--------Q----QRILNWLRDIFPG-NVRLYVHNDALAALASG-TMGKLHGC 149 (319)
Q Consensus 94 -~i~~Igig~pG~~~---~~------~--------~----~~l~~~L~~~~~~-~~pv~v~NDa~aa~~g~-~~g~~~~v 149 (319)
.-.+.-+++|=--. .. . + .-|.+.|+++.-. -.-+.+-||....++++ +...++.+
T Consensus 155 ~l~lgFTFSfP~~Q~si~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~i 234 (474)
T KOG1369|consen 155 KLPLGFTFSFPCRQTSIDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEI 234 (474)
T ss_pred ccccceEEeeeeeecccccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEE
Confidence 22344555553210 00 0 1 2356666655311 12378999999776654 35567789
Q ss_pred EEEECccceeEeE
Q 020972 150 VLIAGTGTIAYGF 162 (319)
Q Consensus 150 ~v~~GTGigg~gi 162 (319)
-|++|||..++-+
T Consensus 235 gvI~GTGtNacY~ 247 (474)
T KOG1369|consen 235 GVIFGTGTNACYM 247 (474)
T ss_pred EEEECCCccceee
Confidence 9999999988633
No 64
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=96.70 E-value=0.81 Score=46.02 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=70.0
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC-CccccCHHH----HHHHHHHHHHHHHHHcCCCccccce
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGEDA----ARETIEKVMADALLKSGSNRSAVRA 97 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~-~~~~~~~~~----~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (319)
++||||--...+.+++++. +|+++...+.... .....-|+. -.+.|..+++++++++++...+|.+
T Consensus 2 ~il~iets~~~~s~a~~~~---------~~~~~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~ 72 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDS---------DGDVLFNESDPYKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDL 72 (535)
T ss_pred EEEEEEccccceEEEEEeC---------CCcEEEEEEeeccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCE
Confidence 6999999888899999986 6778766543200 000011222 3567888999999999998889999
Q ss_pred EEEee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHHHH
Q 020972 98 VCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAAL 138 (319)
Q Consensus 98 Igig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~ 138 (319)
|+++. ||.... .-+....+-|...++ +|+.-.|--.+-+
T Consensus 73 iav~~gPg~~~~l~vg~~~ak~la~~~~--~~~~~v~h~~aH~ 113 (535)
T PRK09605 73 VAFSQGPGLGPCLRVVATAARALALSLD--VPLIGVNHCVAHV 113 (535)
T ss_pred EEECCCCCcHhhHHHHHHHHHHHHHHhC--CCeecccHHHHHH
Confidence 88762 442211 224556777877787 8877776655433
No 65
>PRK13320 pantothenate kinase; Reviewed
Probab=96.70 E-value=0.098 Score=47.25 Aligned_cols=117 Identities=19% Similarity=0.163 Sum_probs=65.2
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
++|.||+|-|++++++++. ++++...+.+ .++....+ .++++..+ ++..+.++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~----------~~~~~~~~~~--------~~~~~~~l----~~~~~~~~----~i~~i~vsS 56 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEG----------DELLEVFVVS--------TEGVEESL----EKLLAKYP----AIRDAIVSS 56 (244)
T ss_pred eEEEEEeCCCcEEEEEEEC----------CEEEEEEEEc--------cHHHHHHH----HHHHHHCC----CCCEEEEEe
Confidence 6999999999999999985 5666554432 12222222 23444332 466777776
Q ss_pred cCCCCchhHHHHHHHHHhhCC-------CCceEEEeC--------cHHHHHHhhc--CCCCCeEEEEECccceeEeEe-c
Q 020972 103 SGVNHPTDQQRILNWLRDIFP-------GNVRLYVHN--------DALAALASGT--MGKLHGCVLIAGTGTIAYGFT-E 164 (319)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~~~-------~~~pv~v~N--------Da~aa~~g~~--~g~~~~v~v~~GTGigg~gii-~ 164 (319)
..+.. ...+.+.+++.++ ...++.+.. |--++++++. ...++.+++-+||-+ ..=++ .
T Consensus 57 Vvp~~---~~~~~~~~~~~~~~~~v~~~~~~gi~~~Y~~p~~lG~DR~~~~~aa~~~~~~~~~lVID~GTA~-Tid~v~~ 132 (244)
T PRK13320 57 VVPLA---EEAFSALLKLLFAVLELDSETPLPFRNDYDTPETLGADRLALCAGARYLFPGKNVLAIDAGTAI-TYDVLDS 132 (244)
T ss_pred cccch---HHHHHHHHHHhCCcEEECCCCCCCCceeccChhhcchhHHHHHHHHHHhcCCCCEEEEEcCCce-EEEEEcC
Confidence 66543 2345555555432 001222222 2224444432 223589999999998 43344 4
Q ss_pred CCcEE
Q 020972 165 DGRDA 169 (319)
Q Consensus 165 dG~~~ 169 (319)
||+..
T Consensus 133 ~g~~~ 137 (244)
T PRK13320 133 EGVYL 137 (244)
T ss_pred CCcEE
Confidence 55543
No 66
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.011 Score=58.23 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=57.1
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~------~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (319)
...++|||+|.|++|++++|.. +++.+.....+ -....+.+|.++++.+.+.|+++.++.+..+.+
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~--------~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~ 76 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK--------NGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIK 76 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC--------CCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 4689999999999999999932 78887665443 122335789999999999999999887765444
Q ss_pred cce-EEEeecCC
Q 020972 95 VRA-VCLAVSGV 105 (319)
Q Consensus 95 i~~-Igig~pG~ 105 (319)
+.+ +++|+.+-
T Consensus 77 ~~~~~~igv~~q 88 (516)
T KOG2517|consen 77 VVGATCIGVVNQ 88 (516)
T ss_pred ccccEEEEEEec
Confidence 443 56666664
No 67
>PRK09604 UGMP family protein; Validated
Probab=96.43 E-value=0.85 Score=43.07 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=68.6
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCcc--------ccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN--------SVGEDAARETIEKVMADALLKSGSNRSA 94 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (319)
++||||--...+.++++|. +++++...+....... +.....-.+.|..++++++++++.++.+
T Consensus 2 ~iLgIdTS~~~~sval~~~---------~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~d 72 (332)
T PRK09604 2 LILGIETSCDETSVAVVDD---------GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLED 72 (332)
T ss_pred eEEEEEccccceEEEEEEC---------CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 5899999777788999986 6678765442211000 0112344678899999999999999999
Q ss_pred cceEEEee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHH
Q 020972 95 VRAVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDAL 135 (319)
Q Consensus 95 i~~Igig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~ 135 (319)
|..|+++. ||.... .-.....+-|...++ +|+.--|--.
T Consensus 73 id~iavt~GPG~~tglrvg~~~Ak~La~~~~--ipl~~v~h~~ 113 (332)
T PRK09604 73 IDAIAVTAGPGLVGALLVGVSFAKALALALN--KPLIGVNHLE 113 (332)
T ss_pred CCEEEEecCCCcHHhHHHHHHHHHHHHHHhC--CCEEeecCHH
Confidence 99999886 665322 123455677777776 7866655533
No 68
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.34 E-value=0.01 Score=56.67 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=28.5
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCC
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC 62 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~ 62 (319)
.|++|||+|+|++|++|+|. +++++.+...++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~---------~g~Il~~~i~pT 33 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDD---------KGEVIGRGITNS 33 (432)
T ss_pred ceEEEEEcCchhEEEEEEcC---------CCcEEEEEecCC
Confidence 59999999999999999998 778988887765
No 69
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=95.96 E-value=1.5 Score=41.26 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=65.6
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC-CccccCH----HHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGE----DAARETIEKVMADALLKSGSNRSAVRAVC 99 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~-~~~~~~~----~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig 99 (319)
||||--...+.+++++. +++++...+.... .....-| ..-.+.|...++++++++++.+.+|..|.
T Consensus 1 Lgiets~~~~s~al~~~---------~~~i~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Ia 71 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDE---------DGEILANVSDTYVPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVA 71 (322)
T ss_pred CEEeccccceEEEEEEC---------CCeEEEEEEeecccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57887666788999986 6777764432110 0100112 23355688889999999999888999988
Q ss_pred Eee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972 100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALA 139 (319)
Q Consensus 100 ig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~ 139 (319)
++. ||.... .-+..+.+.|...++ +|+.-.|--.+-++
T Consensus 72 vt~gPg~~~~l~vg~~~ak~la~~~~--~p~~~v~h~~aHa~ 111 (322)
T TIGR03722 72 FSQGPGLGPCLRVGATAARALALKLN--KPLVGVNHCVAHIE 111 (322)
T ss_pred EecCCchHHhHHHHHHHHHHHHHHhC--CCeechhhHHHHHH
Confidence 875 553221 123455677777776 78776665544333
No 70
>PRK13324 pantothenate kinase; Reviewed
Probab=95.93 E-value=0.52 Score=42.90 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=71.8
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p 103 (319)
+|.||+|-|+|+++++|. ++++.+.+.++.... ...++. ...+..++...+....++..+.++
T Consensus 2 iL~iDiGNT~ik~gl~~~----------~~~~~~~r~~t~~~~-~t~de~----~~~l~~~~~~~~~~~~~i~~viis-- 64 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG----------DRIVSQIRYATSSVD-STSDQM----GVFLRQALRENSVDLGKIDGCGIS-- 64 (258)
T ss_pred EEEEEeCCCceEEEEEEC----------CEEEEEEEEecCccc-cchHHH----HHHHHHHHHhcCCCccCCCeEEEE--
Confidence 799999999999999985 456665555431221 244443 334444555555555567776554
Q ss_pred CCCCchhHHHHHHHHHhhCCCCceEEEeC-----------------cHHHHHHhhc--CCCCCeEEEEECccceeEeEe-
Q 020972 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHN-----------------DALAALASGT--MGKLHGCVLIAGTGTIAYGFT- 163 (319)
Q Consensus 104 G~~~~~~~~~l~~~L~~~~~~~~pv~v~N-----------------Da~aa~~g~~--~g~~~~v~v~~GTGigg~gii- 163 (319)
-++ |.-...+.+.+.+.|+. .|+++.. |--++++++. ...++.+++-+||=+ ..=++
T Consensus 65 SVv-P~l~~~l~~~~~~~~~~-~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~~~~~~iViD~GTA~-T~d~v~ 141 (258)
T PRK13324 65 SVV-PHLNYSLGSAVIKYFNI-KPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADHPNKDLLIIDLGTAT-TFDLVT 141 (258)
T ss_pred eCc-chhHHHHHHHHHHHhCC-CeEEEecCCccceeecCChhhccHHHHHHHHHHHHhcCCCCEEEEEcCCce-EEEEEc
Confidence 333 44555676666666752 3444422 2222344432 223578999999987 43333
Q ss_pred cCCcE
Q 020972 164 EDGRD 168 (319)
Q Consensus 164 ~dG~~ 168 (319)
.+|+.
T Consensus 142 ~~g~~ 146 (258)
T PRK13324 142 KDKKY 146 (258)
T ss_pred CCCeE
Confidence 45544
No 71
>PRK13326 pantothenate kinase; Reviewed
Probab=95.74 E-value=0.67 Score=42.30 Aligned_cols=120 Identities=14% Similarity=0.070 Sum_probs=68.1
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig 101 (319)
.+.|.||+|-|++++++++. ++++...+.++. .. .+.++....+.. +.+. ++..+.++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~----------~~l~~~~r~~t~-~~-~t~de~~~~l~~---------~~~~-~i~~viis 63 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKD----------NKMQIFCKLKTK-LD-LSFDELYSFLKE---------KFDF-KVNQVFVS 63 (262)
T ss_pred cEEEEEEeCCCeEEEEEEEC----------CEEEEEEEeccC-CC-CCHHHHHHHHhc---------CCCC-CCCEEEEE
Confidence 46899999999999999985 466665555432 22 355554333332 2222 46666555
Q ss_pred ecCCCCchhHHHHHHHHHhhCCCCceEEE------------e--------CcHHHHHHhhc--CCCCCeEEEEECcccee
Q 020972 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYV------------H--------NDALAALASGT--MGKLHGCVLIAGTGTIA 159 (319)
Q Consensus 102 ~pG~~~~~~~~~l~~~L~~~~~~~~pv~v------------~--------NDa~aa~~g~~--~g~~~~v~v~~GTGigg 159 (319)
.-. +.-...+.+.+++.|+. .|+++ . .|--++++|+. .+.++.+++-+||=+ .
T Consensus 64 SVv---p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~y~~~~~~LGaDR~a~~vaA~~~~~~~~~iVID~GTA~-T 138 (262)
T PRK13326 64 SVV---PVIDKVLINVIFSLYKV-KPLFIGFDLNYDLSFNPYNSNKFLLGSDVFANLVGAIEYYNINDALVVDLGTAC-T 138 (262)
T ss_pred eCc---ccHHHHHHHHHHHHhCC-CcEEEecCCccCceeecCCCCcccccHHHHHHHHHHHHhcCCCCEEEEECCCce-E
Confidence 333 43444566666665541 23332 2 23334455543 233589999999987 4
Q ss_pred EeEe-cCCcE
Q 020972 160 YGFT-EDGRD 168 (319)
Q Consensus 160 ~gii-~dG~~ 168 (319)
.=++ .+|+.
T Consensus 139 ~D~V~~~g~~ 148 (262)
T PRK13326 139 IFAVSRQDGI 148 (262)
T ss_pred EEEEcCCCcE
Confidence 4344 44443
No 72
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=95.63 E-value=0.83 Score=41.18 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=65.9
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG 104 (319)
|.||+|-|++++++++. ++++...+.++. .. .+.++....+...+ .+ ++..+.++.-
T Consensus 2 L~iDiGNT~i~~g~~~~----------~~~~~~~r~~t~-~~-~t~de~~~~l~~~~----~~------~i~~v~vsSV- 58 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG----------NKVYQFWRLATN-LM-KTYDEHSEFLKELF----GK------SLNKAFISSV- 58 (243)
T ss_pred EEEEECCCcEEEEEEEC----------CEEEEEEEecCC-Cc-cChHHHHHHHHHHH----Hh------hCCEEEEEEc-
Confidence 78999999999999985 466665565432 22 35566544444433 22 2444444432
Q ss_pred CCCchhHHHHHHHHHhhCCCCceEE------------------EeCcHHHHHHhhc-CCCCCeEEEEECccceeEeEec-
Q 020972 105 VNHPTDQQRILNWLRDIFPGNVRLY------------------VHNDALAALASGT-MGKLHGCVLIAGTGTIAYGFTE- 164 (319)
Q Consensus 105 ~~~~~~~~~l~~~L~~~~~~~~pv~------------------v~NDa~aa~~g~~-~g~~~~v~v~~GTGigg~gii~- 164 (319)
+ |.-...+.+.+++.++. .|.. +--|--++++|+. .-.++.+++-+||=+ ..=++.
T Consensus 59 -v-p~~~~~l~~~~~~~~~~-~~~~~~~~~~~gl~~~y~~p~~LG~DR~a~~~aA~~~~~~~~lViD~GTA~-Tid~v~~ 134 (243)
T TIGR00671 59 -V-PELTEAVRNMIPKIKNI-KPEIFFPLVYDGLPNLYKSPKELGIDRVANALAAIKFYGFNVVVVDAGTAL-TIDLVDQ 134 (243)
T ss_pred -c-CChHHHHHHHHHHHhCC-CcEEECCCccCCcccccCChhhccHHHHHHHHHHHHHcCCCEEEEEcCCce-EEEEEcC
Confidence 2 33344566667666641 2322 2234444555543 123489999999987 444443
Q ss_pred CCcE
Q 020972 165 DGRD 168 (319)
Q Consensus 165 dG~~ 168 (319)
+|+.
T Consensus 135 ~g~~ 138 (243)
T TIGR00671 135 EGKF 138 (243)
T ss_pred CCeE
Confidence 5544
No 73
>PRK14878 UGMP family protein; Provisional
Probab=95.61 E-value=2 Score=40.34 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=63.1
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC-CccccCH----HHHHHHHHHHHHHHHHHcCCCccccceEE
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGE----DAARETIEKVMADALLKSGSNRSAVRAVC 99 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~-~~~~~~~----~~~~~~i~~~i~~~l~~~~~~~~~i~~Ig 99 (319)
||||--...+.+++++. ++++...+.... .....-| ..-.+.|..+++++++++++++.+|.+|.
T Consensus 1 l~iets~~~~s~al~~~----------~~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Ia 70 (323)
T PRK14878 1 LGIESTAHTLGVGIVKE----------DKVLANVRDTYVPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVA 70 (323)
T ss_pred CEEecCCcccEEEEEEC----------CEEEEEEEEecccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57887777788888874 446665443110 0000111 23345688899999999999989999988
Q ss_pred Eee-cCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHH
Q 020972 100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALA 136 (319)
Q Consensus 100 ig~-pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~a 136 (319)
++. ||.... .-+....+-|...++ +|+.-.|--.+
T Consensus 71 vt~gPG~~~~lrvg~~~Ak~la~~~~--~p~~~v~h~~~ 107 (323)
T PRK14878 71 VSQGPGLGPALRVGATAARALALKYN--KPLVPVNHCIA 107 (323)
T ss_pred EecCCCcccchHHHHHHHHHHHHHhC--CCccccchHHH
Confidence 875 664321 123455667777776 78766665544
No 74
>PRK13331 pantothenate kinase; Reviewed
Probab=95.53 E-value=1.1 Score=40.64 Aligned_cols=121 Identities=12% Similarity=-0.104 Sum_probs=67.2
Q ss_pred cccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972 16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (319)
Q Consensus 16 ~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i 95 (319)
|+.+....+|.||+|-|+|++++++. .+++...+ + +.. ...+ +..++...+....++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~----------~~~~~~~r--t-~~~-~t~d---------~~~~l~~~~~~~~~i 57 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSG----------ETLVKTWD--T-PHL-DESI---------IQLLLPGQTLLIVAP 57 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEEC----------CEEEEEEE--c-CCc-chHH---------HHHHHHHcCCCcccc
Confidence 34444557999999999999999985 35555434 2 221 1222 445666666655567
Q ss_pred ceEEEeecCCCCchhHHHHHHHHHhhCCCCceE------------EEeCcHHHHHHhhc-CCCCCeEEEEECccceeEeE
Q 020972 96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRL------------YVHNDALAALASGT-MGKLHGCVLIAGTGTIAYGF 162 (319)
Q Consensus 96 ~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv------------~v~NDa~aa~~g~~-~g~~~~v~v~~GTGigg~gi 162 (319)
..+.++.--+. -...+ ++.++. .|+ .+--|--++++|+. +-..+.+++-+||=+ ..=+
T Consensus 58 ~~~iisSVVP~---~~~~~----~~~~~~-~~~~v~~~~l~~~yp~lG~DR~~~~vaA~~~~~~~~iVID~GTA~-T~D~ 128 (251)
T PRK13331 58 NPLVIASVVPQ---QTELW----QTYPNV-RLITLDDIPLNNLYPTLGIDRALALWGAGQTYGFPCLVIDAGTAL-TFTG 128 (251)
T ss_pred CEEEEEecCcc---HHHHH----HHhcCC-ceEEecCCCCccCCCCccHHHHHHHHHHHHHhCCCEEEEECCCce-EEEE
Confidence 77666543221 11112 333331 232 33344445555543 223578999999987 4434
Q ss_pred e-cCCcE
Q 020972 163 T-EDGRD 168 (319)
Q Consensus 163 i-~dG~~ 168 (319)
+ .+|+.
T Consensus 129 V~~~g~~ 135 (251)
T PRK13331 129 VDSDRTL 135 (251)
T ss_pred EcCCCcE
Confidence 3 34544
No 75
>PRK12440 acetate kinase; Reviewed
Probab=95.42 E-value=0.33 Score=46.72 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=84.8
Q ss_pred CeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (319)
Q Consensus 147 ~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~ 225 (319)
+.|+.-+|.|+.-+ -+.||+.+- .-|++-+-|=- .....|..++. +...+.+. + .+.+++.
T Consensus 202 ~~Iv~HLG~G~Si~-Ai~~GksvDtsmG~tPl~GL~--------------MgtRsG~idp~-vv~~l~~~-~-~s~~e~~ 263 (397)
T PRK12440 202 SFISVHLGNGASVC-AIKNGQSVDTSMGFTPLSGLM--------------MGTRCGDLDPG-IIEFLLKK-G-WSQEKVF 263 (397)
T ss_pred CEEEEEeCCCcEee-eeeCCEEEEcCCCCCCCCCCC--------------CCCcCCCCCHH-HHHHHHHc-C-CCHHHHH
Confidence 78999999998665 458999764 33333322100 00011111222 22223332 2 2445555
Q ss_pred HHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972 226 GWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL 302 (319)
Q Consensus 226 ~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~ 302 (319)
..++++.. -..+....+.|.+++++||+.|+-.++-++..+++.|..+...++- -.-||+.||+
T Consensus 264 ~~Ln~~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~l~g-------------vDaiVFTgGI 330 (397)
T PRK12440 264 NSLNKKSGFLGVSGLTSDARGILEAMEEGHEGATLAFEVFTYRVAKYIASYLAALDS-------------LDGIIFTGGI 330 (397)
T ss_pred HHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEEEECCcc
Confidence 55543211 0111123577878888999999999999999999999999988863 2479999999
Q ss_pred hhhcHHHHHHHHhhc
Q 020972 303 FLLSWLVVFLKLIEG 317 (319)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (319)
- .+...+...++++
T Consensus 331 G-en~~~vr~~i~~~ 344 (397)
T PRK12440 331 G-ENSLPIRREILKN 344 (397)
T ss_pred c-cCcHHHHHHHHhh
Confidence 9 5555666666654
No 76
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=95.23 E-value=0.49 Score=45.73 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=84.2
Q ss_pred CeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (319)
Q Consensus 147 ~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~ 225 (319)
+.|++-+|.|+.-+ -+.||+.+- .-|+.-+-|-. + ....|..++..+. .+.+..+ .+.+++.
T Consensus 207 ~~Iv~HLG~G~Si~-Ai~~GksvDTsmG~tpLeGl~-m-------------gtRsG~lDp~~~~-~l~~~~~-~s~~e~~ 269 (404)
T TIGR00016 207 NLIVCHLGNGASVC-AVKNGKSIDTSMGFTPLEGLM-M-------------GTRSGDIDPAIIS-YLAETLG-MSADDIE 269 (404)
T ss_pred CEEEEEeCCCceee-eeeCCEEEEeCCCCCCccCCC-C-------------CCCCCCCChHHHH-HHHHhcC-CCHHHHH
Confidence 78999999998665 458999764 21221111100 0 0011112222221 1222222 1445555
Q ss_pred HHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972 226 GWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL 302 (319)
Q Consensus 226 ~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~ 302 (319)
..++.+.. -..+....+.|.+++++||+.|+..++-++..+++.|..+...++- + -.-||+.||+
T Consensus 270 ~~Ln~~SGLlg~sG~s~D~Rel~~~~~~gd~~A~lA~~~f~yri~k~Iga~~a~L~G--~----------vDaiVFTGGI 337 (404)
T TIGR00016 270 NTLNKKSGLLGISGLSSDLRDIEDAYAEGNEQAQLAIKMYVHRIAKYIGSYIASLEG--N----------LDAIVFTGGI 337 (404)
T ss_pred HHHhhcccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--C----------CCEEEEcCcc
Confidence 55543211 0111223677878888999999999999999999999999998872 1 1379999999
Q ss_pred hhhcHHHHHHHHhhc
Q 020972 303 FLLSWLVVFLKLIEG 317 (319)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (319)
- .....+...++++
T Consensus 338 G-Ens~~vr~~i~~~ 351 (404)
T TIGR00016 338 G-ENAATVRELVLEA 351 (404)
T ss_pred c-cCCHHHHHHHHhh
Confidence 8 5556777777664
No 77
>PLN02666 5-oxoprolinase
Probab=95.02 E-value=0.093 Score=57.67 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=35.7
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHH
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL 85 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l 85 (319)
+.|.+|||+|||.|.++++|. ++.-+...+.+++.+. ...+.+++-|.+++++++
T Consensus 8 ~~~rigIDvGGTFTD~v~~~~---------~~~~~~~~K~~sttp~-d~~~gv~~Gi~~~l~~~~ 62 (1275)
T PLN02666 8 RKFRFCIDRGGTFTDVYAEVP---------GGSDFRVLKLLSVDPA-NYDDAPREGIRRILEEVT 62 (1275)
T ss_pred CCEEEEEECCcCCEeEEEEec---------CCCeEEEEEeCCCCCC-ChhHHHHHHHHHHHHHHh
Confidence 358999999999999999997 5553445555543231 222445666666655543
No 78
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.01 E-value=0.18 Score=43.44 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=49.9
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I 98 (319)
++|+|+|.|++++++.... +++ +++.....++... .=.+.+.+.+.|.++++++-+.++. ++..+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~-------~~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~~---~i~~V 70 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVD-------EDGEINVIGVGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAGV---KIDSV 70 (187)
T ss_pred CEEEEeccceEEEEEEEEc-------CCCCEEEEEEEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence 4799999999999988641 034 5555555543211 0135677888888888888777665 46678
Q ss_pred EEeecCCC
Q 020972 99 CLAVSGVN 106 (319)
Q Consensus 99 gig~pG~~ 106 (319)
.+++||..
T Consensus 71 ~v~i~g~~ 78 (187)
T smart00842 71 YVGISGRH 78 (187)
T ss_pred EEEEcCCc
Confidence 89999963
No 79
>PRK12379 propionate/acetate kinase; Provisional
Probab=94.71 E-value=0.58 Score=45.09 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=83.8
Q ss_pred CeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (319)
Q Consensus 147 ~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~ 225 (319)
+.|+.-+|.|+.-+ -+.||+.+- .=|+.-+-|-. + ....|..++..+. .+.+..+ .+.+++.
T Consensus 198 ~lIv~HLG~G~Si~-Ai~~GksvDtsmG~tPleGl~-m-------------gtRsG~ldp~~l~-~l~~~~~-~s~~el~ 260 (396)
T PRK12379 198 GLVVAHLGNGASIC-AVRNGQSVDTSMGMTPLEGLM-M-------------GTRSGDVDFGAMA-WIASQTG-QTLGDLE 260 (396)
T ss_pred CEEEEEeCCCcchh-eeeCCEEEEeCCCCCcccCCC-C-------------CCCCCCCChHHHH-HHHHhcC-CCHHHHH
Confidence 78999999998665 458999764 11111000100 0 0011112222221 1222222 2445555
Q ss_pred HHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972 226 GWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL 302 (319)
Q Consensus 226 ~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~ 302 (319)
..++.+.. -..+....+.|.+++.+||+.|+.+++-++..+++.|..+...++- -.-||+.||+
T Consensus 261 ~~Lnk~SGLlg~sG~s~D~R~v~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~L~~-------------vDaIVFTGGI 327 (396)
T PRK12379 261 RVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLHR-------------LDGIIFTGGI 327 (396)
T ss_pred HHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEEEECCcc
Confidence 55543211 0111123577888888999999999999999999999999988863 2379999999
Q ss_pred hhhcHHHHHHHHhhc
Q 020972 303 FLLSWLVVFLKLIEG 317 (319)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (319)
. .+...+...++++
T Consensus 328 G-en~~~vR~~i~~~ 341 (396)
T PRK12379 328 G-ENSSLIRRLVMEH 341 (396)
T ss_pred c-cCcHHHHHHHHhh
Confidence 9 6666777777764
No 80
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=94.69 E-value=0.12 Score=50.23 Aligned_cols=68 Identities=24% Similarity=0.236 Sum_probs=45.7
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccc---------------cC-H----HHHHHHHHHHHH
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS---------------VG-E----DAARETIEKVMA 82 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~---------------~~-~----~~~~~~i~~~i~ 82 (319)
|-++||+|.|++.+.++|+. +|+++...... |++. .+ . ..+++.|.++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~--------~G~~l~~~s~~--NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~ 71 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLE--------TGEVLATASFL--NPQRAYGADVISRISYALSPEGLEELQRLIRETINELIE 71 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETT--------T--EEEEEEEE---GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcchhheeeEEEECC--------CCCEEEeeccc--CCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 67999999999999999984 89999887753 3321 01 1 234566777777
Q ss_pred HHHHHcCCCccccceEEE
Q 020972 83 DALLKSGSNRSAVRAVCL 100 (319)
Q Consensus 83 ~~l~~~~~~~~~i~~Igi 100 (319)
+++.++++++++|..+.|
T Consensus 72 ~l~~~~gi~~~~I~~i~i 89 (412)
T PF14574_consen 72 ELLEKAGISPEDIYEIVI 89 (412)
T ss_dssp HHHHHHT--GGGEEEEEE
T ss_pred HHHHHcCCCHHHeEEEEE
Confidence 788888999889988665
No 81
>PRK07157 acetate kinase; Provisional
Probab=94.64 E-value=0.95 Score=43.69 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=82.9
Q ss_pred CCeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhH
Q 020972 146 LHGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDEL 224 (319)
Q Consensus 146 ~~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l 224 (319)
.+.|+.-+|.|+.-+ -+.||+.+- .-|+--+-|-. + ....|..++..+. .+.+..+ .+.+++
T Consensus 199 ~~~Iv~HLG~G~Si~-Ai~~GksvDtsmG~tpLeGl~-m-------------gtRsG~ldp~~~~-~l~~~~~-~s~~e~ 261 (400)
T PRK07157 199 VNFVNLHIGNGASLC-AIKNSKSIDTSMGLTPLAGVM-M-------------GTRSGDIDPSIHE-FVAKEAN-MSISEF 261 (400)
T ss_pred cCEEEEEeCCCceee-eeeCCeEEEeCCCCCCccCCC-C-------------CCCCCCCChHHHH-HHHHhcC-CCHHHH
Confidence 378999999998665 458999764 11111100100 0 0011111122111 1222222 144455
Q ss_pred HHHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcc
Q 020972 225 IGWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENI 301 (319)
Q Consensus 225 ~~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg 301 (319)
...++++.. -..+....+.|.+++.+||+.|+-.++-++..+++.|..+...++= + -.-||+.||
T Consensus 262 ~~~Ln~~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~L~G--~----------vDaiVFTgG 329 (400)
T PRK07157 262 TDLLNKKSGLLGVSGISSDLRDVIKAAESGNKRAKFALDLYAQKIVDYLANYINKIGK--K----------IDAIVFTAG 329 (400)
T ss_pred HHHHhhccCceEecCCCCcHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--C----------CCEEEECCc
Confidence 554443211 0111123577878888999999999999999999999999998871 0 147999999
Q ss_pred hhhhcHHHHHHHHhhc
Q 020972 302 LFLLSWLVVFLKLIEG 317 (319)
Q Consensus 302 ~~~~~~~~~~~~~~~~ 317 (319)
+- .+...+...++++
T Consensus 330 IG-en~~~vr~~i~~~ 344 (400)
T PRK07157 330 VG-ENSAFVRELVINK 344 (400)
T ss_pred cc-cCcHHHHHHHHhh
Confidence 99 5555666666653
No 82
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.53 E-value=0.31 Score=47.56 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=50.5
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCcc---ccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVR 96 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~~---~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (319)
..++|+|+|.||+++++..... ++ +++...+.++.... =.+.+.+.+.|.++++++-..++. ++.
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~-------~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~aI~~av~~ae~~~g~---~i~ 77 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLP-------DGMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMADC---QIS 77 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcC-------CCCEEEEEEEEccCCCccCCEEEcHHHHHHHHHHHHHHHHHHhCC---ccc
Confidence 4799999999999998776310 34 44555555432110 135678888888888887766664 567
Q ss_pred eEEEeecCC
Q 020972 97 AVCLAVSGV 105 (319)
Q Consensus 97 ~Igig~pG~ 105 (319)
.+.+++||.
T Consensus 78 ~v~v~i~g~ 86 (420)
T PRK09472 78 SVYLALSGK 86 (420)
T ss_pred EEEEEecCc
Confidence 778888886
No 83
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=94.44 E-value=1.1 Score=40.64 Aligned_cols=122 Identities=19% Similarity=0.161 Sum_probs=71.0
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p 103 (319)
.|.||+|-|++++++.+ +++.....+..+ +.. ...++.- ..+..++... ...++.++.+ +
T Consensus 2 ~L~iDiGNT~~~~a~~~----------~~~~~~~~r~~t-~~~-~~~del~----~~~~~l~~~~--~~~~~~~~~i--s 61 (251)
T COG1521 2 LLLIDIGNTRIVFALYE----------GGKVVQTWRLAT-EDL-LTEDELG----LQLHNLFDGN--SVRDIDGIVI--S 61 (251)
T ss_pred eEEEEeCCCeEEEEEec----------CCeEEEEEeecc-ccc-ccHHHHH----HHHHHHhccc--ccccccccee--e
Confidence 68999999999999987 477777777543 332 2344433 3333444332 3346666655 3
Q ss_pred CCCCchhHHHHHHHHHhhCCCCceEEE-------------------eCcHHHHHHhhc--CCCCCeEEEEECccceeEeE
Q 020972 104 GVNHPTDQQRILNWLRDIFPGNVRLYV-------------------HNDALAALASGT--MGKLHGCVLIAGTGTIAYGF 162 (319)
Q Consensus 104 G~~~~~~~~~l~~~L~~~~~~~~pv~v-------------------~NDa~aa~~g~~--~g~~~~v~v~~GTGigg~gi 162 (319)
-.+ +.-...++..+++.|+. .|.++ --|--++++++. .+ ...++|-+||-+ ..-+
T Consensus 62 svv-p~~~~~~~~~~~~~f~~-~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~-~~~vVVD~GTA~-Tid~ 137 (251)
T COG1521 62 SVV-PPLGIFLEAVLKEYFKV-KPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYHKYG-KAVVVVDFGTAT-TIDL 137 (251)
T ss_pred ccC-ccHHHHHHHHHHHHhcc-CceeeechhhccCCcccCCChhhhcHHHHHHHHHHHHHcC-CcEEEEEcCCeE-EEEE
Confidence 344 44455667777777652 34322 223334455443 23 348999999987 4445
Q ss_pred ecCCcEE
Q 020972 163 TEDGRDA 169 (319)
Q Consensus 163 i~dG~~~ 169 (319)
+.++..+
T Consensus 138 v~~~~~~ 144 (251)
T COG1521 138 VDEGGRY 144 (251)
T ss_pred EcCCCcE
Confidence 5555544
No 84
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=94.40 E-value=1 Score=43.66 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=82.6
Q ss_pred CeEEEEECccceeEeEecCCcEEe-eCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (319)
Q Consensus 147 ~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~ 225 (319)
+.|+.-+|.|+.-+ -+.||+.+- .-|+--+ +|- - .....|..++..+... .+..+ -+.+++.
T Consensus 203 ~lIvaHLG~GaSi~-Ai~~GrsvDtsmG~tpl---eGl--~---------m~tRsG~ldp~~v~~l-~~~~~-~s~~el~ 265 (402)
T PRK00180 203 NLITCHLGNGASIA-AIKNGKSVDTSMGFTPL---EGL--V---------MGTRSGDIDPAIIPYL-MEKLG-MSVDEID 265 (402)
T ss_pred CEEEEEeCCCceee-eeeCCEEEEeCCCCCcc---cCC--C---------CCCCCCCCChHHHHHH-HHhcC-CCHHHHH
Confidence 78999999999665 458999764 1111100 110 0 0001122222222221 12212 1445555
Q ss_pred HHhccCCCh---HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972 226 GWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL 302 (319)
Q Consensus 226 ~~~~~~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~ 302 (319)
..++.+... ..+....+.|.+.+.+||+.|+.+++-++..+++.|..+...|+- + -..||+.||+
T Consensus 266 ~~L~~~sGLlg~sG~s~D~Rel~~~~~~gd~~A~lA~d~f~yri~k~Iga~~a~L~g--~----------vDaiVfTGGI 333 (402)
T PRK00180 266 NLLNKKSGLLGLSGVSSDMRDIEAAAEEGDERAKLALDVFVYRLAKYIGSYAAALNG--R----------LDAIVFTAGI 333 (402)
T ss_pred HHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC--C----------CCEEEEcCcc
Confidence 555432210 111123577877778899999999999999999999999998832 1 2479999999
Q ss_pred hhhcHHHHHHHHhhc
Q 020972 303 FLLSWLVVFLKLIEG 317 (319)
Q Consensus 303 ~~~~~~~~~~~~~~~ 317 (319)
. .....+...++++
T Consensus 334 g-E~s~~lr~~I~~~ 347 (402)
T PRK00180 334 G-ENSALVREKVLEG 347 (402)
T ss_pred c-cCCHHHHHHHHhh
Confidence 8 4555666666653
No 85
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=5 Score=37.93 Aligned_cols=126 Identities=17% Similarity=0.110 Sum_probs=82.4
Q ss_pred ccccCcccccccccccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEe---------cCCCCccccCHHHH
Q 020972 3 RYRNGEIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA---------AGCSNHNSVGEDAA 73 (319)
Q Consensus 3 ~~~~~~~~~~~~~~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~---------~~~~~~~~~~~~~~ 73 (319)
.||++-+..|.=-.++.-...+|||+-.=.-|.++++|. .++++.... .+...|. .-.+.-
T Consensus 13 ~~r~~~lr~f~~~~~tr~sy~VLgIETSCDDTavaVVd~---------~~~~~~~~i~~~t~~~~~yGGI~P~-~a~~~H 82 (405)
T KOG2707|consen 13 SYRINFLRLFRCFIRTRLSYKVLGIETSCDDTAVAVVDE---------FSHVLSSEIYSRTEIHRQYGGIIPT-VAQLLH 82 (405)
T ss_pred ccchhHHHHhccchhhhhheeeeeEecccCcceeeeecc---------cccccchhhhhhhHHHHhhCCCCCh-HHHHHH
Confidence 455555555553344444433999998888899999998 777776522 1122221 122344
Q ss_pred HHHHHHHHHHHHHHcCCCccccceEEEee-cCCC-CchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972 74 RETIEKVMADALLKSGSNRSAVRAVCLAV-SGVN-HPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (319)
Q Consensus 74 ~~~i~~~i~~~l~~~~~~~~~i~~Igig~-pG~~-~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g 140 (319)
.++|..++++++++++..+.++.+|++-. ||.. .-..+..+..-|...+. .|+.=.+-..+-++.
T Consensus 83 r~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~--kPlipVHHMeAHAL~ 149 (405)
T KOG2707|consen 83 RENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQ--KPLIPVHHMEAHALS 149 (405)
T ss_pred HHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhcc--CCccchhHHHHhHHH
Confidence 67899999999999999999999988752 5543 22345666677777776 677666666665554
No 86
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=94.17 E-value=1.1 Score=43.91 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=57.4
Q ss_pred EEEEEEcCccceeEEEEeCcc---CC----CCCCC-CCCeEEEEecCCCCccccCHHHH-HHHHHHHHHHHHHHcCCCcc
Q 020972 23 VILGLDGGTTSTVCICMPVIS---MS----DSLPD-PLPVLARAAAGCSNHNSVGEDAA-RETIEKVMADALLKSGSNRS 93 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~---~~----~~~~~-~G~il~~~~~~~~~~~~~~~~~~-~~~i~~~i~~~l~~~~~~~~ 93 (319)
.-+|||||.|.|.+++-.+.. ++ +++.= +-+++.+..+-.++. .+...+ .+.+.+.|++-.+++++.++
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl--~~~~~ID~~al~~iv~~eY~~Agi~p~ 81 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPL--LSQTEIDAEALKEIVEEEYRKAGITPE 81 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCC--CCCCccCHHHHHHHHHHHHHHcCCCHH
Confidence 468999999999987765311 00 11110 122333322211111 111111 35677888888999999999
Q ss_pred ccceEEEeecCCCCc-hhHHHHHHHHHhhCC
Q 020972 94 AVRAVCLAVSGVNHP-TDQQRILNWLRDIFP 123 (319)
Q Consensus 94 ~i~~Igig~pG~~~~-~~~~~l~~~L~~~~~ 123 (319)
+|..=.|=+.|---. ++..++...|.+..+
T Consensus 82 ~I~TGAVIITGETArKeNA~~v~~~Ls~~aG 112 (473)
T PF06277_consen 82 DIDTGAVIITGETARKENAREVLHALSGFAG 112 (473)
T ss_pred HCccccEEEecchhhhhhHHHHHHHHHHhcC
Confidence 997655556775433 344678888888776
No 87
>PRK13322 pantothenate kinase; Reviewed
Probab=94.16 E-value=1.5 Score=39.60 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=63.8
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p 103 (319)
+|-||+|-|++|+++++. +++++.+.+ .. .+.++....+. .+ +..++..+.++.-
T Consensus 2 ~L~IDiGNT~iK~~l~~~---------~~~~~~~~~----~~--~t~~~~~~~l~----~~------~~~~i~~v~vsSV 56 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN---------GGQIIEHGA----HL--DSPAELLLGLA----NL------ASLAPTRCRIVSV 56 (246)
T ss_pred EEEEEeCCCcEEEEEEcC---------CCchhhhcc----cc--CCHHHHHHHHH----hC------CccCCCEEEEEeC
Confidence 799999999999999985 455544322 11 23444333321 11 1224666666543
Q ss_pred CCCCchhHHHHHHHHHhhCCCCceEEEeCcHH-------------------HHHHhhc-CCCCCeEEEEECccceeEeEe
Q 020972 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDAL-------------------AALASGT-MGKLHGCVLIAGTGTIAYGFT 163 (319)
Q Consensus 104 G~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~-------------------aa~~g~~-~g~~~~v~v~~GTGigg~gii 163 (319)
. .+.....+.+.+++.++. .|.++..+.. ++++|+. +-.++.+++-+||=+ ..=++
T Consensus 57 ~--p~~~~~~l~~~l~~~~~~-~~~~v~~~~~~~gv~~~y~~p~~LG~DR~~~~~aA~~~~~~~~lViD~GTA~-TiD~v 132 (246)
T PRK13322 57 L--SEEETARLVAILEKRLGI-PVVFAKVAAELAGVRNGYEDPEQLGIDRWLALLGAFHLAKNACLVIDCGTAV-TIDLV 132 (246)
T ss_pred C--CHHHHHHHHHHHHHHhCC-CeEEEecCCcCCCceecCCChhhccHHHHHHHHHHHHHcCCCEEEEEcCCee-EEEEE
Confidence 3 223345677888777652 3445544433 2333332 123457889999987 44344
Q ss_pred c-CCcE
Q 020972 164 E-DGRD 168 (319)
Q Consensus 164 ~-dG~~ 168 (319)
. ||+.
T Consensus 133 ~~~g~~ 138 (246)
T PRK13322 133 DADGQH 138 (246)
T ss_pred cCCCcE
Confidence 3 5544
No 88
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.00 E-value=0.049 Score=53.64 Aligned_cols=67 Identities=13% Similarity=0.074 Sum_probs=44.7
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCC---CCeE-EEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDP---LPVL-ARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~---G~il-~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (319)
|+||+|.|.+|++++|. + |+++ .....+.. +....+++.+++.+.+.++++... ..+
T Consensus 1 ~aiD~Gtt~~k~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~ 67 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY---------ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIA 67 (454)
T ss_pred CcEeccCCchheEEEEE---------cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCC
Confidence 58999999999999998 5 4665 33332221 112356778888888888877642 235
Q ss_pred cceEEEeecC
Q 020972 95 VRAVCLAVSG 104 (319)
Q Consensus 95 i~~Igig~pG 104 (319)
|.+||+..-|
T Consensus 68 i~~Igis~q~ 77 (454)
T TIGR02627 68 PDSIGIDTWG 77 (454)
T ss_pred ceEEEEeccc
Confidence 7777776544
No 89
>PRK12397 propionate kinase; Reviewed
Probab=93.85 E-value=1 Score=43.45 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=51.3
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHHhhc
Q 020972 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKLIEG 317 (319)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~~~~ 317 (319)
..+.|.+++.+||+.|+..++-++..+++.|..+...++- -.-||+.||+-.+++ .+...++++
T Consensus 282 D~R~l~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~lgg-------------vDaiVFTGGIGEns~-~vR~~ic~~ 345 (404)
T PRK12397 282 DYRDVEQAANTGNRQAKLALTLFAERIRATIGSYIMQMGG-------------LDALVFTGGIGENSA-RARSAVCHN 345 (404)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEEEECCchhhCCH-HHHHHHHhh
Confidence 3677878888999999999999999999999999987542 247999999995554 666666653
No 90
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.84 E-value=0.21 Score=51.45 Aligned_cols=49 Identities=16% Similarity=0.021 Sum_probs=34.6
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHH
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMA 82 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~ 82 (319)
.+.+|||+|||.|.++++|. ++.++...+..++ + ..+......+.+.+.
T Consensus 2 ~~~iGID~GGTfTDaV~~~~---------~~g~~~~~K~lTt-P--~~~~~~~~~~~~~~~ 50 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDE---------DGGVLATIKVLTT-P--DLPSGIVNAGIRLAL 50 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeC---------CCCEEEEEEccCC-C--CchhhHHHHHHHHHh
Confidence 48999999999999999998 6657777777665 4 244444444444333
No 91
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=93.82 E-value=0.28 Score=44.22 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=52.4
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igi 100 (319)
...++|+||||-+|+++..|- +-..+.....|.. ...+ ++.+.++++..+ .+...+|+
T Consensus 2 ~~kilGiDIGGAntk~a~~DG---------~~~~~d~~YlPMW----k~k~----rL~~~Lkei~~k-----~~~~~vgv 59 (330)
T COG1548 2 KMKILGIDIGGANTKIASSDG---------DNYKIDHIYLPMW----KKKD----RLEETLKEIVHK-----DNVDYVGV 59 (330)
T ss_pred CceEEEeeccCccchhhhccC---------CeeeeeEEEeccc----cchh----HHHHHHHHHhcc-----CCcceeEE
Confidence 346999999999999998553 3323344444431 1223 345555555433 24556778
Q ss_pred eecCC-CC----ch-hHHHHHHHHHhhCCCCceEEEe
Q 020972 101 AVSGV-NH----PT-DQQRILNWLRDIFPGNVRLYVH 131 (319)
Q Consensus 101 g~pG~-~~----~~-~~~~l~~~L~~~~~~~~pv~v~ 131 (319)
-+.|- .| .. +-..+.+..++.|+ +||++-
T Consensus 60 vMTaELaD~f~tk~eGVe~Ii~~v~~Af~--~pv~~v 94 (330)
T COG1548 60 VMTAELADAFKTKAEGVEDIIDTVEKAFN--CPVYVV 94 (330)
T ss_pred EeeHHHHHHhhhHHhHHHHHHHHHHHhcC--CceEEE
Confidence 77773 22 11 23467888899997 786553
No 92
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=93.80 E-value=0.75 Score=37.74 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=57.2
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
.+||+|.|--+|=+++.|. .+.+..-...-..+ +....++.|.+ ++++. ++..|-||+
T Consensus 5 ~iLalD~G~kriGvAv~d~---------~~~~a~pl~~i~~~----~~~~~~~~l~~----~i~~~-----~i~~iVvGl 62 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP---------LGGTAQPLETIKRN----NGTPDWDRLEK----LIKEW-----QPDGLVVGL 62 (138)
T ss_pred cEEEEEeCCCEEEEEEecC---------CCCEEcCEEEEEcC----CCchHHHHHHH----HHHHh-----CCCEEEEec
Confidence 4999999999999999997 55543322111111 11122344444 44433 467888999
Q ss_pred cCCCCchh------HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972 103 SGVNHPTD------QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (319)
Q Consensus 103 pG~~~~~~------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~ 139 (319)
|=-.+... -..+.+.|++.++ +||..-+.-.....
T Consensus 63 P~~~~G~~~~~~~~v~~f~~~L~~~~~--~~v~~~DEr~TT~~ 103 (138)
T PRK00109 63 PLNMDGTEGPRTERARKFANRLEGRFG--LPVVLVDERLSTVE 103 (138)
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCHHH
Confidence 86433221 2468888888886 89888877765433
No 93
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=93.53 E-value=0.42 Score=44.83 Aligned_cols=125 Identities=16% Similarity=0.120 Sum_probs=74.8
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG 104 (319)
||+||||-++|++++|. +|++....+.+. +.+ .+.+. +.+++.+++++.+. ...++|-+.|
T Consensus 1 ~G~DiGGA~~K~a~~~~---------~g~~~~v~~~~~-plW-~~~~~----L~~~l~~~~~~~~~----~~~~avtMTg 61 (318)
T TIGR03123 1 LGIDIGGANTKAAELDE---------DGRIKEVHQLYC-PLW-KGNDK----LAETLKEISQDLSS----ADNVAVTMTG 61 (318)
T ss_pred CccccccceeeeEEecC---------CCceeEEEEecC-ccc-CCchH----HHHHHHHHHHhcCc----cceEEEEeeh
Confidence 68999999999999998 788776555433 222 45544 44455555544321 2467788888
Q ss_pred C-----CCchhH-HHHHHHHHhhCCCCceE-EEeCcHHHH-------------H---Hh-h---cCCCCCeEEEEECccc
Q 020972 105 V-----NHPTDQ-QRILNWLRDIFPGNVRL-YVHNDALAA-------------L---AS-G---TMGKLHGCVLIAGTGT 157 (319)
Q Consensus 105 ~-----~~~~~~-~~l~~~L~~~~~~~~pv-~v~NDa~aa-------------~---~g-~---~~g~~~~v~v~~GTGi 157 (319)
= .++.++ ..|.+.+++.|+ .|+ ++.+|.... . .+ + ....+|.+++=+|.=+
T Consensus 62 ELaD~f~~r~~GV~~i~~~~~~~~~--~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTT 139 (318)
T TIGR03123 62 ELADCFEDKAEGVEFILAAVESAFG--SPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTT 139 (318)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHhcC--CCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccc
Confidence 3 223333 467888999997 454 445555210 0 00 0 1235788888877322
Q ss_pred eeEeEecCCcEEe
Q 020972 158 IAYGFTEDGRDAR 170 (319)
Q Consensus 158 gg~gii~dG~~~r 170 (319)
-=...+.||+...
T Consensus 140 tDi~~i~~G~p~~ 152 (318)
T TIGR03123 140 TDIIPIIDGEVAA 152 (318)
T ss_pred eeeEEecCCEeee
Confidence 2335678898754
No 94
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=93.04 E-value=0.63 Score=44.50 Aligned_cols=72 Identities=25% Similarity=0.364 Sum_probs=46.6
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I 98 (319)
++|+|+|.|++++++.... .++ +++.....+.... .=.+.+.+.+.|.++++++.+.++. ++..+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~-------~~~~~~i~~~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~~---~i~~v 71 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVL-------EDGELNIIGVGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAGC---EIRSV 71 (371)
T ss_pred EEEEEeccceEEEEEEEEc-------CCCCEEEEEEEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence 6899999999999987641 034 4455545442211 0135677777788877777666665 45567
Q ss_pred EEeecCC
Q 020972 99 CLAVSGV 105 (319)
Q Consensus 99 gig~pG~ 105 (319)
.+++||.
T Consensus 72 ~~~v~g~ 78 (371)
T TIGR01174 72 IVSISGA 78 (371)
T ss_pred EEEEccc
Confidence 7888874
No 95
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=91.39 E-value=0.96 Score=36.96 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=55.1
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeE-EEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVL-ARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il-~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig 101 (319)
.+||+|.|..+|=+++.|. .+.+- ........ +....++.|.++++ +. ++..|-||
T Consensus 2 riL~lD~G~kriGiAvsd~---------~~~~a~pl~~i~~~-----~~~~~~~~l~~li~----~~-----~i~~iVvG 58 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP---------LGIIASPLETIPRR-----NREKDIEELKKLIE----EY-----QIDGIVVG 58 (135)
T ss_dssp EEEEEEECSSEEEEEEEET---------TTSSEEEEEEEEEC-----CCCCCHHHHHHHHH----HC-----CECEEEEE
T ss_pred eEEEEEeCCCeEEEEEecC---------CCCeEeeeEEEECC-----CCchHHHHHHHHHH----Hh-----CCCEEEEe
Confidence 5899999999999999997 55432 11222111 11233344444443 32 57788899
Q ss_pred ecCCC----Cch--hHHHHHHHHHhhCCCCceEEEeCcHHH
Q 020972 102 VSGVN----HPT--DQQRILNWLRDIFPGNVRLYVHNDALA 136 (319)
Q Consensus 102 ~pG~~----~~~--~~~~l~~~L~~~~~~~~pv~v~NDa~a 136 (319)
+|=-. .+. .-..+.+.|++.+++ +||..-+.-..
T Consensus 59 lP~~~~G~~~~~~~~v~~f~~~L~~~~~~-ipV~~~DEr~T 98 (135)
T PF03652_consen 59 LPLNMDGSESEQARRVRKFAEELKKRFPG-IPVILVDERLT 98 (135)
T ss_dssp EEBBCTSSC-CCHHHHHHHHHHHHHHH-T-SEEEEEECSCS
T ss_pred CCcccCCCccHHHHHHHHHHHHHHHhcCC-CcEEEECCChh
Confidence 98432 221 235788899999832 89888776543
No 96
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=91.30 E-value=6.2 Score=36.58 Aligned_cols=136 Identities=17% Similarity=0.107 Sum_probs=80.6
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC---CCCccccC--HHHHHHHHHHHHHHHHHHcC-CCccccce
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG---CSNHNSVG--EDAARETIEKVMADALLKSG-SNRSAVRA 97 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~---~~~~~~~~--~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ 97 (319)
+-.||+|...+|..+++.... .-+++.+.+.+ .......+ .++.++++.++++++.+... ...+++
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~------~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~~i-- 73 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEG------SLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVDEV-- 73 (300)
T ss_pred eEEEEecCCeeeEEEEEecCC------cEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCeE--
Confidence 468999999999999986200 11233332221 10110111 14556666666666554432 111233
Q ss_pred EEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hh--cCCCCCeEEEEECccceeEeEecCCcEE
Q 020972 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SG--TMGKLHGCVLIAGTGTIAYGFTEDGRDA 169 (319)
Q Consensus 98 Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~---g~--~~g~~~~v~v~~GTGigg~gii~dG~~~ 169 (319)
..++.+..-+..+...+.+.+++.++ .++.|-+...=|.+ +. .....+.+++=+|.|+.-..+..++++.
T Consensus 74 ~~vaTsa~R~A~N~~~~~~~i~~~tg--i~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~ 148 (300)
T TIGR03706 74 RAVATAALRDAKNGPEFLREAEAILG--LPIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG 148 (300)
T ss_pred EEEEcHHHHcCCCHHHHHHHHHHHHC--CCeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe
Confidence 35677777666667788899998887 78888877764433 22 1233456889999999777665566653
No 97
>PRK10854 exopolyphosphatase; Provisional
Probab=91.23 E-value=6.8 Score=39.34 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=84.4
Q ss_pred CCCcEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecC---CCCccccCH--HHHHHHHHHHHHHHHHH---c
Q 020972 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAG---CSNHNSVGE--DAARETIEKVMADALLK---S 88 (319)
Q Consensus 19 ~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~---~~~~~~~~~--~~~~~~i~~~i~~~l~~---~ 88 (319)
|-+..+-.||+|..+++..+++.. ++ +++.+.+.. .......+. ++.+++..++++++.+. .
T Consensus 8 ~~~~~~A~IDIGSNSirL~I~e~~--------~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~ 79 (513)
T PRK10854 8 PRPQEFAAVDLGSNSFHMVIARVV--------DGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGF 79 (513)
T ss_pred CCCCEEEEEEeccchheEEEEEec--------CCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 434579999999999999999862 23 333322221 111111121 45566666666655443 3
Q ss_pred CCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hhc--C-CCCCeEEEEECccceeEeE
Q 020972 89 GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGF 162 (319)
Q Consensus 89 ~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~---g~~--~-g~~~~v~v~~GTGigg~gi 162 (319)
++ +++ ..++.+-+-+..+...+.+.+++.++ .+|.|-+...=|.+ |.. . ..++.+++=+|.|+--.-+
T Consensus 80 ~v--~~v--~~vATsAlReA~N~~~fl~~i~~~tG--l~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~ 153 (513)
T PRK10854 80 SP--ANV--CIVGTHTLRQALNATDFLKRAEKVIP--YPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVI 153 (513)
T ss_pred CC--CeE--EEEehHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEE
Confidence 32 234 34677777666677889999999997 89999988774433 321 1 2246889999999866655
Q ss_pred ecCCcE
Q 020972 163 TEDGRD 168 (319)
Q Consensus 163 i~dG~~ 168 (319)
..++++
T Consensus 154 ~~~~~~ 159 (513)
T PRK10854 154 GENFEP 159 (513)
T ss_pred ecCCCe
Confidence 556643
No 98
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=91.08 E-value=7.5 Score=36.89 Aligned_cols=43 Identities=5% Similarity=0.061 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHH
Q 020972 253 EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVV 310 (319)
Q Consensus 253 ~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~ 310 (319)
..|+.++.-.+..++..........+. ..||++|..+ +..+..
T Consensus 262 Dia~sll~mv~~nIg~la~l~A~~~~~--------------~~I~f~G~~~-~~~~~~ 304 (341)
T PF03630_consen 262 DIAKSLLNMVSNNIGQLAYLHAKIHGV--------------KRIVFGGSFI-RNNPIT 304 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----------------EEEEESGGG-TSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CEEEEEeccc-cCCHHH
Confidence 457777877777777777766666676 4799999988 444333
No 99
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=91.06 E-value=14 Score=35.05 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=74.3
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCc-----c-ccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH-----N-SVGEDAARETIEKVMADALLKSGSNRSAVR 96 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~-----~-~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (319)
.+||||--...+.++++|. +++++...+...... . +.-...-.++|..++++++++++....+|.
T Consensus 2 ~iLgIETScd~tsvAl~~~---------~~~il~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did 72 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTS---------DGEILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDIS 72 (345)
T ss_pred eEEEEEccchhhEEEEEEC---------CCcEEEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 5899999998999999997 777877543211000 0 011233467889999999999999888999
Q ss_pred eEEEee-cCCCC-chhHHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972 97 AVCLAV-SGVNH-PTDQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (319)
Q Consensus 97 ~Igig~-pG~~~-~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g 140 (319)
+|+++. ||... -.-+....+-|...++ +|++=.|-..+-+++
T Consensus 73 ~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~--~PligV~HlegHi~a 116 (345)
T PTZ00340 73 LICYTKGPGMGAPLSVGAVVARTLSLLWG--KPLVGVNHCVAHIEM 116 (345)
T ss_pred EEEEecCCCcHhhHHHHHHHHHHHHHHcC--CCEeecchHHHHHHH
Confidence 988763 44321 1224566777877787 899998888765554
No 100
>PRK07058 acetate kinase; Provisional
Probab=90.92 E-value=4.5 Score=39.06 Aligned_cols=137 Identities=12% Similarity=0.035 Sum_probs=77.9
Q ss_pred CCeEEEEECccceeEeEecCCcEEe-eCCCCCccC-CcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhh
Q 020972 146 LHGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILG-DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDE 223 (319)
Q Consensus 146 ~~~v~v~~GTGigg~gii~dG~~~r-aGg~Ghl~g-d~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~ 223 (319)
.+.|+.-+|.|+.-+ -+.||+.+- .-|+.-+-| .-| ...|..++..+.. +.+..+ .+.++
T Consensus 201 ~~~Iv~HLG~G~Si~-Ai~~GksvDtsmG~tpLeGL~mg---------------tRsG~ldp~~l~~-l~~~~~-~s~~e 262 (396)
T PRK07058 201 GKVVAAHLGSGASLC-ALDAGKSRDTSMGFSTLDGIPMA---------------TRCGALDPGVVLH-LLKQEG-MSLDE 262 (396)
T ss_pred CCEEEEEeCCCceee-eeeCCEEEEcCCCCCCcCCCccc---------------CCCCCCChHHHHH-HHHhcC-CCHHH
Confidence 378999999998655 558999764 222211111 000 0112222222221 222222 14445
Q ss_pred HHHHhccCCCh---HHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEc
Q 020972 224 LIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMEN 300 (319)
Q Consensus 224 l~~~~~~~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~G 300 (319)
+...++.+... ..+....+.| + +++|+.|+..++-++..+++.|..+...++- -..||+.|
T Consensus 263 l~~~Ln~~SGLlg~sG~s~D~R~l-~--~~~d~~A~lA~d~f~yri~k~IGa~~a~Lg~-------------vDaiVfTG 326 (396)
T PRK07058 263 VEDLLYHRSGLLGVSGISGDTRDL-L--ASDAPEAREALDLFALRIAGEIARLAATLGG-------------LDAVVFTA 326 (396)
T ss_pred HHHHHhcccCcEEecCCCCCHHHH-h--hcCCHhHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCEEEECC
Confidence 55554432110 1111124555 2 3469999999999999999999999988853 24799999
Q ss_pred chhhhcHHHHHHHHhhc
Q 020972 301 ILFLLSWLVVFLKLIEG 317 (319)
Q Consensus 301 g~~~~~~~~~~~~~~~~ 317 (319)
|+- .....+...++++
T Consensus 327 GIg-Ens~~vr~~i~~~ 342 (396)
T PRK07058 327 GIG-EHQPAIRAAVCER 342 (396)
T ss_pred ccc-cCcHHHHHHHHhh
Confidence 998 4555666666653
No 101
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=90.75 E-value=7.9 Score=33.67 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=66.5
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p 103 (319)
+|+||--+..+.+++.+ +++++.+.... ....-.+.|...+++++++++....++..|.++ -
T Consensus 1 iLaidTs~~~~sval~~----------~~~~~~~~~~~-------~~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~-~ 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLD----------DGEILAERSEE-------AGRNHSEILLPMIEELLAEAGLSLQDLDAIAVG-V 62 (202)
T ss_pred CEEEECCCcceEEEEEE----------CCEEEEEEeeh-------hhHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEe-c
Confidence 47899888888899887 46777665432 123334667888899999999988899888775 4
Q ss_pred CCCCchh---HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972 104 GVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (319)
Q Consensus 104 G~~~~~~---~~~l~~~L~~~~~~~~pv~v~NDa~aa~~ 139 (319)
||.+-.+ .....+-|...++ +|++-.+--.+.+.
T Consensus 63 GPGSfTGlRig~~~akgla~~~~--~p~~~vssL~~lA~ 99 (202)
T TIGR03725 63 GPGSFTGLRIGLATAKGLALALG--IPLVGVSSLEALAA 99 (202)
T ss_pred CCChHHhHHHHHHHHHHHHHHhC--CCEEecCHHHHHHh
Confidence 6655433 3445666666666 89887777665443
No 102
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=90.75 E-value=4.3 Score=38.64 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHH-cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEE
Q 020972 74 RETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (319)
Q Consensus 74 ~~~i~~~i~~~l~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~ 152 (319)
++.+...++.++.+ .+..+.+ ..+-+..|-.........+.+.|-+.++. ..+.+.++..+++++. |..++++|-
T Consensus 74 ~~~~e~i~~~~~~~~l~~~~~~-~~vll~~p~~~~~~~r~~~~e~lfE~~~~-~~v~~~~~~~~a~~~~--g~~~~lVVD 149 (373)
T smart00268 74 WDDMEKIWDYTFFNELRVEPEE-HPVLLTEPPMNPKSNREKILEIMFETFNF-PALYIAIQAVLSLYAS--GRTTGLVID 149 (373)
T ss_pred HHHHHHHHHHHHhhhcCCCCcc-CeeEEecCCCCCHHHHHHHHHHhhccCCC-CeEEEeccHHHHHHhC--CCCEEEEEe
Confidence 34445555555552 3333322 34556777766555566777777666762 3488999999988863 467899999
Q ss_pred ECccceeEeEecCCcEEe
Q 020972 153 AGTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 153 ~GTGigg~gii~dG~~~r 170 (319)
+|.+..-...+.||.+..
T Consensus 150 iG~~~t~v~pv~~G~~~~ 167 (373)
T smart00268 150 SGDGVTHVVPVVDGYVLP 167 (373)
T ss_pred cCCCcceEEEEECCEEch
Confidence 999886666678898753
No 103
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=90.69 E-value=2.9 Score=34.85 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=44.7
Q ss_pred EEEEEEcCcc----ceeEEEEeCccCCCCCCCCCCeEEEEec-CCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972 23 VILGLDGGTT----STVCICMPVISMSDSLPDPLPVLARAAA-GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (319)
Q Consensus 23 ~~lGIDiGGT----k~~~~l~d~~~~~~~~~~~G~il~~~~~-~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (319)
.++++--|.. .+.++++|. +|+++...+. .+.... ...+...+.+.+ ++.+. +..-
T Consensus 6 rVla~~~g~g~~~~~~~~v~ld~---------~G~v~d~~~~~~~~~~~-~~~~~~~~~l~~----~i~~~-----kP~v 66 (150)
T PF14639_consen 6 RVLALSWGSGDGDDAVFCVVLDE---------NGEVLDHLKLVYNERDR-ERKEEDMERLKK----FIEKH-----KPDV 66 (150)
T ss_dssp -EEEEE-TT--TTS-EEEEEE-T---------TS-EEEEEEE-S-TT-S-S-SHHHHHHHHH----HHHHH-------SE
T ss_pred EEEEEEcCCCCCCCCEEEEEECC---------CCcEEEEEEEcCCccch-HHHHHHHHHHHH----HHHHc-----CCeE
Confidence 4777777733 488999999 9999998876 221111 223344444444 44443 2334
Q ss_pred EEEeecCCCCchhHHHHHHHHHhhC-----CCCceEEEeCcHHHHHHh
Q 020972 98 VCLAVSGVNHPTDQQRILNWLRDIF-----PGNVRLYVHNDALAALAS 140 (319)
Q Consensus 98 Igig~pG~~~~~~~~~l~~~L~~~~-----~~~~pv~v~NDa~aa~~g 140 (319)
|+||-.+....+-...+++.+++.- + .+||.+.||.-+-++.
T Consensus 67 I~v~g~~~~s~~l~~~v~~~v~~~~~~~~~~-~i~V~~v~~~~A~lY~ 113 (150)
T PF14639_consen 67 IAVGGNSRESRKLYDDVRDIVEELDEDEQMP-PIPVVIVDDEVARLYS 113 (150)
T ss_dssp EEE--SSTHHHHHHHHHHHHHHHTTB-TTS--B--EEE---TTHHHHH
T ss_pred EEEcCCChhHHHHHHHHHHHHHHhhhcccCC-CceEEEECcHHHHHHh
Confidence 4453222221122345666665543 2 2788888888776664
No 104
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=90.21 E-value=2.3 Score=35.06 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=54.7
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHH-HHHHHHHHHHHHHHHHcCCCccccceEEE
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGED-AARETIEKVMADALLKSGSNRSAVRAVCL 100 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~-~~~~~i~~~i~~~l~~~~~~~~~i~~Igi 100 (319)
..+||+|.|.-+|=+++-|. .+ .+.+.. .+....+.. ..+++|.+.+++. ++..|-|
T Consensus 2 ~~ilalD~G~KrIGvA~sd~---------~~-~~A~pl---~~i~~~~~~~~~~~~l~~li~~~---------~~~~vVV 59 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDI---------LG-SLASPL---ETIKRKNGKPQDFNALLKLVKEY---------QVDTVVV 59 (141)
T ss_pred ceEEEEecCCceEEEEEecC---------CC-ccccch---hhheeccccHhhHHHHHHHHHHh---------CCCEEEE
Confidence 36999999999999999887 33 222211 111111111 2344555544432 5677889
Q ss_pred eecCCCCch------hHHHHHHHHHhhCCCCceEEEeCcHH
Q 020972 101 AVSGVNHPT------DQQRILNWLRDIFPGNVRLYVHNDAL 135 (319)
Q Consensus 101 g~pG~~~~~------~~~~l~~~L~~~~~~~~pv~v~NDa~ 135 (319)
|+|=--+.+ ....+.+.|+++|+ +||.+-..-.
T Consensus 60 GlP~~m~g~~~~~~~~~~~f~~~L~~r~~--lpv~l~DERl 98 (141)
T COG0816 60 GLPLNMDGTEGPRAELARKFAERLKKRFN--LPVVLWDERL 98 (141)
T ss_pred ecCcCCCCCcchhHHHHHHHHHHHHHhcC--CCEEEEcCcc
Confidence 988743211 13568899999997 8988776554
No 105
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=89.95 E-value=2.5 Score=41.23 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=50.9
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~~~~---~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ 97 (319)
+++|+|+|.+|+++.+..... +| +++.....++... .=.+.+.+.+.|.++++++...++. ++..
T Consensus 7 ~iv~LDIGTskV~~lVge~~~-------~g~i~iig~g~~~SrGik~G~I~di~~~~~sI~~av~~AE~mag~---~i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRP-------DGRLNIIGVGSHPSRGIKKGVIVDLDAAAQSIKKAVEAAERMAGC---EIKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcC-------CCeEEEEeeecccCcccccceEEcHHHHHHHHHHHHHHHHHhcCC---Ccce
Confidence 899999999999988876521 33 2333333322111 0136788889999999999888876 5668
Q ss_pred EEEeecCC
Q 020972 98 VCLAVSGV 105 (319)
Q Consensus 98 Igig~pG~ 105 (319)
+.++++|-
T Consensus 77 v~vs~sG~ 84 (418)
T COG0849 77 VIVSLSGN 84 (418)
T ss_pred EEEEeccc
Confidence 88999993
No 106
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=89.65 E-value=1.6 Score=41.61 Aligned_cols=140 Identities=15% Similarity=0.079 Sum_probs=84.2
Q ss_pred CCeEEEEECccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHcCCCChhhHH
Q 020972 146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (319)
Q Consensus 146 ~~~v~v~~GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~~~~~l~ 225 (319)
-+.+..-+|.|..-++ +.||+.+-. ..|+..- +|- -.| ...|- -+.++...+.+..+. +.+++.
T Consensus 200 l~~I~~HLGNGASicA-iknGkSvDT-SMGfTPL-eGl--~MG---------TRsGd-iDP~ii~~l~~~~~~-s~~~i~ 263 (396)
T COG0282 200 LNLITCHLGNGASICA-IKNGKSVDT-SMGFTPL-EGL--MMG---------TRSGD-IDPGIILYLMEQEGM-SAEEID 263 (396)
T ss_pred cCEEEEEecCchhhhh-hhCCeeecc-CCCCCcc-cce--ecc---------CCCCC-CChHHHHHHHHhcCC-CHHHHH
Confidence 3678889999875554 589987641 1222110 000 000 00111 123344445555553 555555
Q ss_pred HHhccCCC---hHHHhchhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcch
Q 020972 226 GWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENIL 302 (319)
Q Consensus 226 ~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~ 302 (319)
..++++.. -..+.+..+.+.+++.+|++ |+-.++-+...|++.+......++-. ..+|+-||+
T Consensus 264 ~~LNkkSGllGlSg~ssD~R~l~~~~~~g~~-A~lA~~~f~~Ri~kyIg~y~a~L~gl-------------DaiVFTaGI 329 (396)
T COG0282 264 TLLNKKSGLLGLSGLSSDMRDLEEAAAEGNE-AKLALDMFVYRIAKYIGSYAAALGGL-------------DALVFTAGI 329 (396)
T ss_pred HHHhhhccccccccccchHHHHHHHhccCch-HHHHHHHHHHHHHHHHHHHHHHhCCC-------------CEEEEeCcc
Confidence 55543221 11222346888899999977 99999999999999999999888742 379999999
Q ss_pred hhhcHHHHHHHHhh
Q 020972 303 FLLSWLVVFLKLIE 316 (319)
Q Consensus 303 ~~~~~~~~~~~~~~ 316 (319)
- .+...+...+++
T Consensus 330 G-ENs~~iR~~v~~ 342 (396)
T COG0282 330 G-ENSALVRELVCE 342 (396)
T ss_pred c-cCcHHHHHHHHh
Confidence 8 555566666655
No 107
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=89.31 E-value=3 Score=33.82 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=54.4
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG 104 (319)
||||.|..+|=+++.|. .+.+..-...-.. .+....++.|.+ ++++. ++..|-||+|=
T Consensus 1 laiD~G~kriGvA~~d~---------~~~~a~pl~~i~~----~~~~~~~~~l~~----~i~~~-----~~~~iVvGlP~ 58 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI---------TGWTAQGIPTIKA----QDGEPDWSRIEE----LLKEW-----TPDKIVVGLPL 58 (130)
T ss_pred CeEccCCCeEEEEEECC---------CCCEEeceEEEEe----cCCcHHHHHHHH----HHHHc-----CCCEEEEeccC
Confidence 68999999999999887 5543311110000 112233344444 44443 46678899886
Q ss_pred CCCchh------HHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972 105 VNHPTD------QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (319)
Q Consensus 105 ~~~~~~------~~~l~~~L~~~~~~~~pv~v~NDa~aa~~ 139 (319)
-.+-.. -..+.+.|++.++ .||.+-+.-.....
T Consensus 59 ~~dG~~~~~a~~v~~f~~~L~~~~~--~~v~~~DEr~TT~~ 97 (130)
T TIGR00250 59 NMDGTEGPLTERAQKFANRLEGRFG--VPVVLWDERLSTVE 97 (130)
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCHHH
Confidence 533222 2478888888886 89888877665433
No 108
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=88.83 E-value=8.7 Score=36.51 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHc-CCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEEC
Q 020972 76 TIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAG 154 (319)
Q Consensus 76 ~i~~~i~~~l~~~-~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~G 154 (319)
.+...++.++.+. ..++. -..+-+..|..........+.+.|-+.++. ..+.+.++.-+++++. |..++++|-+|
T Consensus 76 ~~e~~~~~~~~~~l~~~~~-~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~-~~v~~~~~~~~a~~~~--g~~~~lVVDiG 151 (371)
T cd00012 76 DMEKIWDHLFFNELKVNPE-EHPVLLTEPPLNPKSNREKTTEIMFETFNV-PALYVAIQAVLSLYAS--GRTTGLVVDSG 151 (371)
T ss_pred HHHHHHHHHHHHhcCCCCC-CCceEEecCCCCCHHHHHHHHHHhhccCCC-CEEEEechHHHHHHhc--CCCeEEEEECC
Confidence 3444444554432 22322 235667788877655566777777677762 3599999999988863 45789999999
Q ss_pred ccceeEeEecCCcEEe
Q 020972 155 TGTIAYGFTEDGRDAR 170 (319)
Q Consensus 155 TGigg~gii~dG~~~r 170 (319)
.+..-...+.||.+..
T Consensus 152 ~~~t~i~pv~~G~~~~ 167 (371)
T cd00012 152 DGVTHVVPVYDGYVLP 167 (371)
T ss_pred CCeeEEEEEECCEEch
Confidence 9875556678887754
No 109
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=88.78 E-value=32 Score=35.72 Aligned_cols=67 Identities=16% Similarity=-0.008 Sum_probs=40.8
Q ss_pred ccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccceeEeE
Q 020972 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGF 162 (319)
Q Consensus 94 ~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGigg~gi 162 (319)
.+..+.|.+|-.-+......+++..+. .+. ..+.+-|+..||+++-.. ..+..+++=+|-|.--..+
T Consensus 159 ~v~~aVITVPayF~~~qR~at~~Aa~~-AGl-~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSi 228 (657)
T PTZ00186 159 KVSNAVVTCPAYFNDAQRQATKDAGTI-AGL-NVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISV 228 (657)
T ss_pred ccceEEEEECCCCChHHHHHHHHHHHH-cCC-CeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEE
Confidence 466677888887665544445554433 232 347899999998885321 2245667777777644444
No 110
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=88.57 E-value=0.66 Score=36.89 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=41.5
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccC--HHHHH--HHHHHHHHHHHHHcCCC-ccccceE
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVG--EDAAR--ETIEKVMADALLKSGSN-RSAVRAV 98 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~--~~~~~--~~i~~~i~~~l~~~~~~-~~~i~~I 98 (319)
+++||+|+++|+++++.. +........+.....+.+ ...+. +.+.+.++..++++... ..++..+
T Consensus 1 i~~iDiGs~~~~~~i~~~----------~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED----------GSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEEE-SSSEEEEEEET----------TEEEEEEEES----------HHHHH--HHHHHHHT--HHHHHHH-HHHH--S
T ss_pred CEEEEcCCCcEEEEEEEe----------CCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHHHHHhCCeeeEE
Confidence 578999999999999985 333322222211000011 23333 34444444433332211 1234444
Q ss_pred EEeecCCCCchhHHHHHHHHHhhCCCCceEEEeC
Q 020972 99 CLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN 132 (319)
Q Consensus 99 gig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~N 132 (319)
.+++++ ..-..+.+.+++.++ .|+.+++
T Consensus 71 ~v~~g~----s~l~~i~~~~~~~~~--~~v~v~~ 98 (120)
T PF14450_consen 71 YVSIGG----SKLQNIEELIEKCGG--MPVRVAG 98 (120)
T ss_dssp --TTGG----GGSTTHHHHHHHHHT--S-EEE--
T ss_pred EecCch----hHHHhHHHHHHHhCC--CcEEEcc
Confidence 444422 122357888888887 7899988
No 111
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=88.18 E-value=7.6 Score=38.30 Aligned_cols=145 Identities=12% Similarity=0.146 Sum_probs=74.4
Q ss_pred EEEEEEcCccceeEEEEeCccCC-------CCCCC-CCCeEEEEecCCCCccccCHHHH-HHHHHHHHHHHHHHcCCCcc
Q 020972 23 VILGLDGGTTSTVCICMPVISMS-------DSLPD-PLPVLARAAAGCSNHNSVGEDAA-RETIEKVMADALLKSGSNRS 93 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~-------~~~~~-~G~il~~~~~~~~~~~~~~~~~~-~~~i~~~i~~~l~~~~~~~~ 93 (319)
.-+|||||.|.|.+++-.+.... +.++= +-+++.+...-.++. .+...+ .+.|.+.+++-.+++++.++
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl--~~~~~ID~~~i~~~V~~ey~~Agi~~~ 84 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPL--LKQGEIDEAAIKELIEEEYQKAGIAPE 84 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCC--CCCccccHHHHHHHHHHHHHHcCCCHH
Confidence 67999999999988765541110 01100 123333332211111 111111 35678888888999999998
Q ss_pred ccceEEEeecCCCCchhHHHHHHHHHhhCCC-CceEEEe----CcHHHHHHh----hc-CC-CCCeEEEEECccceeEeE
Q 020972 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVH----NDALAALAS----GT-MG-KLHGCVLIAGTGTIAYGF 162 (319)
Q Consensus 94 ~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~-~~pv~v~----NDa~aa~~g----~~-~g-~~~~v~v~~GTGigg~gi 162 (319)
+|..=..=+.|.... ..++.+.+++.-.. +.-|+-. =+...+.+| .. .. ..-.+++=+|.|.--..+
T Consensus 85 die~~ahIITg~~~~--~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 85 SIDSGAVIITGETAR--KENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred HccccEEEEEechhH--HHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCCCceEEEE
Confidence 886544445554332 23555555542100 0111000 011112221 11 11 223566788998877888
Q ss_pred ecCCcEEee
Q 020972 163 TEDGRDARA 171 (319)
Q Consensus 163 i~dG~~~ra 171 (319)
..+|++...
T Consensus 163 f~~G~l~~T 171 (475)
T PRK10719 163 FDAGKVIDT 171 (475)
T ss_pred EECCEEEEE
Confidence 899987653
No 112
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=88.08 E-value=3.3 Score=36.29 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=70.3
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccc----cCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS----VGEDAARETIEKVMADALLKSGSNRSAVR 96 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~----~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (319)
++..+|||+|...+-..++|. +|+.+.-... .....+ .++-+.++.+.++.+.+-++.|+. +.
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~---------d~~Pvag~~~-~advVRDGiVvdf~eaveiVrrlkd~lEk~lGi~---~t 94 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDR---------DGQPVAGCLD-WADVVRDGIVVDFFEAVEIVRRLKDTLEKQLGIR---FT 94 (277)
T ss_pred CceEEEeecccceEEEEEEcC---------CCCeEEEEeh-hhhhhccceEEehhhHHHHHHHHHHHHHHhhCeE---ee
Confidence 468999999999999999999 8998865331 111111 234444555555555555555542 21
Q ss_pred eEEEe-ecCCC--CchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEe
Q 020972 97 AVCLA-VSGVN--HPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 97 ~Igig-~pG~~--~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~r 170 (319)
-..-+ -||.. +++- ....++.. + ..|.-.=|--.|+. ...+.+|+.+|-+|.|.-|..++.+|++..
T Consensus 95 ha~taiPPGt~~~~~ri---~iNViESA-G--levl~vlDEPTAaa-~vL~l~dg~VVDiGGGTTGIsi~kkGkViy 164 (277)
T COG4820 95 HAATAIPPGTEQGDPRI---SINVIESA-G--LEVLHVLDEPTAAA-DVLQLDDGGVVDIGGGTTGISIVKKGKVIY 164 (277)
T ss_pred eccccCCCCccCCCceE---EEEeeccc-C--ceeeeecCCchhHH-HHhccCCCcEEEeCCCcceeEEEEcCcEEE
Confidence 11112 24432 1111 11223222 2 33222222222211 224567888999998877777889998764
No 113
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=87.76 E-value=24 Score=33.00 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=68.1
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC---------CccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---------NHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~---------~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (319)
+|+||--...+.+++++. +.+++...+.... .+ +.....-.+.|...+++++++++....+
T Consensus 1 iLaIdTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p-~~~~~~H~~~l~~~i~~~l~~~~~~~~~ 70 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDD---------GKGLLSNIVASQIELHARYGGVVP-ELASRAHLEAIPPLIEEALAEAGLTLSD 70 (314)
T ss_pred CEEEECcccceEEEEEEC---------CceEEEEEEeehhhhccCcCCcCc-chhHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 489999888899999986 4457765443110 01 1123445677889999999999998889
Q ss_pred cceEEEeecCCCCch---hHHHHHHHHHhhCCCCceEEEeCcHHHHH
Q 020972 95 VRAVCLAVSGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALAAL 138 (319)
Q Consensus 95 i~~Igig~pG~~~~~---~~~~l~~~L~~~~~~~~pv~v~NDa~aa~ 138 (319)
|.+|+++. ||.... -+....+-|...++ +|++-.|--.+-+
T Consensus 71 id~iav~~-GPGsftglrig~~~Ak~la~~~~--~p~~~v~h~~aha 114 (314)
T TIGR03723 71 IDAIAVTA-GPGLIGALLVGVSFAKALALALN--KPLIGVNHLEGHL 114 (314)
T ss_pred CCEEEEec-CCChHHhHHHHHHHHHHHHHHhC--CCEEecccHHHHH
Confidence 99988763 443322 23456666776776 8987777655433
No 114
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=87.24 E-value=25 Score=35.08 Aligned_cols=137 Identities=14% Similarity=0.081 Sum_probs=83.3
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCC--eEEEEecC---CCCccccCH--HHHHHHHHHHHHHHHHHcC-CCc
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP--VLARAAAG---CSNHNSVGE--DAARETIEKVMADALLKSG-SNR 92 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~--il~~~~~~---~~~~~~~~~--~~~~~~i~~~i~~~l~~~~-~~~ 92 (319)
..++-.||+|..+++..+++.. ++. ++.+.+.. .......+. ++.+++..++++.+.+... ...
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~--------~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v 76 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREV--------AGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPP 76 (496)
T ss_pred CCEEEEEEccccceeEEEEEec--------CCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999862 232 22222111 000101121 4556666666665544331 112
Q ss_pred cccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hhc--C-CCCCeEEEEECccceeEeEecCC
Q 020972 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGFTEDG 166 (319)
Q Consensus 93 ~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~---g~~--~-g~~~~v~v~~GTGigg~gii~dG 166 (319)
+++. .++.+-+-+..+...+.+.+++.++ .+|.|-+...=|.+ |.. . ..++.+++=+|.|+--..+..++
T Consensus 77 ~~i~--~vATsAvReA~N~~~fl~~i~~~tG--l~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~ 152 (496)
T PRK11031 77 SQIR--VVATATLRLAVNADEFLAKAQEILG--CPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGA 152 (496)
T ss_pred CeEE--EEEeHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCC
Confidence 2443 4677777666677889999999997 89999988774433 321 1 22457889999998666555566
Q ss_pred cEE
Q 020972 167 RDA 169 (319)
Q Consensus 167 ~~~ 169 (319)
++.
T Consensus 153 ~~~ 155 (496)
T PRK11031 153 QAT 155 (496)
T ss_pred cee
Confidence 543
No 115
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=87.20 E-value=19 Score=31.30 Aligned_cols=18 Identities=28% Similarity=0.150 Sum_probs=15.6
Q ss_pred EEEEEcCccceeEEEEeC
Q 020972 24 ILGLDGGTTSTVCICMPV 41 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~ 41 (319)
+|.||+|-|++|+++++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~ 18 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDG 18 (206)
T ss_dssp EEEEEE-SSEEEEEEEET
T ss_pred CEEEEECCCeEEEEEEEC
Confidence 588999999999999986
No 116
>PF13941 MutL: MutL protein
Probab=86.90 E-value=2.8 Score=41.36 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=40.3
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~ 90 (319)
+|.+|+|.|.||+.++|... .+.+++.+.+.+++- . +..+..-+.++++++.++.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~------~~~~~ig~a~apTTv-~---~~Dv~~G~~~A~~~l~~~~~~ 58 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVD------GEPRLIGQAEAPTTV-E---PGDVTIGLNNALEQLEEQTPA 58 (457)
T ss_pred EEEEEeCCcceEEeEEeccC------CccEEEEEEeCCCCc-C---cccHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999211 177888998876643 1 145556667777776666543
No 117
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=86.55 E-value=30 Score=32.83 Aligned_cols=41 Identities=17% Similarity=0.040 Sum_probs=30.5
Q ss_pred EEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHH
Q 020972 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET 76 (319)
Q Consensus 26 GIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~ 76 (319)
|||-|.+++.++.+|. +|+++...+.++.... .+|..+++.
T Consensus 1 GIDpGT~s~dv~~~dd---------~g~v~~~~~ipt~~v~-~~p~~iv~~ 41 (343)
T PF07318_consen 1 GIDPGTKSFDVCGLDD---------DGKVIFYFSIPTEEVA-KNPSIIVEE 41 (343)
T ss_pred CCCCCCCcEEEEEEcc---------CCcEEEEeeccHHHhh-hCHHHHHHH
Confidence 6899999999999997 7999999888654332 455544433
No 118
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=85.11 E-value=16 Score=34.42 Aligned_cols=71 Identities=14% Similarity=0.204 Sum_probs=46.5
Q ss_pred eEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccceeEeEecCCcEE
Q 020972 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGRDA 169 (319)
Q Consensus 97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGigg~gii~dG~~~ 169 (319)
.+.+++|.-.+.-+...+.+.+.+. +. ..|++...--+|++|... .....++|-+|.|.-=.+++..|.+.
T Consensus 95 ~vvi~vP~~~T~verrA~~~a~~~a-Ga-~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv 168 (326)
T PF06723_consen 95 RVVICVPSGITEVERRALIDAARQA-GA-RKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIV 168 (326)
T ss_dssp EEEEEE-SS--HHHHHHHHHHHHHT-T--SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHc-CC-CEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEE
Confidence 4678999988877777888888764 32 689999999999998642 23345678888887556666666554
No 119
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=84.49 E-value=36 Score=31.97 Aligned_cols=72 Identities=13% Similarity=0.173 Sum_probs=48.9
Q ss_pred eEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccceeEeEecCCcEEe
Q 020972 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGigg~gii~dG~~~r 170 (319)
.+-+++|-..+......+.+.++. ++. ..+.+.|+.-+|+++... .....+++-+|.|.--..++..|.+..
T Consensus 100 ~vvitvP~~~~~~~R~~l~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~ 174 (335)
T PRK13929 100 NVVVCTPSGSTAVERRAISDAVKN-CGA-KNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVS 174 (335)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH-cCC-CeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEE
Confidence 466888987766666677776654 442 458999999999886421 234578888999886666654554443
No 120
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=84.37 E-value=32 Score=31.32 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCccccceEEEeecCCCCch---hHHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972 71 DAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (319)
Q Consensus 71 ~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG~~~~~---~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g 140 (319)
..-.+.|..+++++++++++...+|.+|+++. ||.... -+..+.+-|...++ +|++=.|--.+-++.
T Consensus 27 r~H~~~L~~~i~~~l~~~~~~~~did~iavt~-GPGsftgLrvG~~~Ak~La~~~~--~Pli~v~~l~a~a~~ 96 (268)
T PF00814_consen 27 RQHSENLPPLIEELLKEAGISLSDIDAIAVTR-GPGSFTGLRVGLSFAKGLALALN--IPLIGVSHLEAHALS 96 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGESEEEEEE-ESS-HHHHHHHHHHHHHHHHHTT----EEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-CCCcccccHHHHHHHHHHHHHhC--CCeEeeccHHHHHHh
Confidence 33467788999999999999999999988763 443332 24566777877787 899888887765443
No 121
>PLN02920 pantothenate kinase 1
Probab=84.02 E-value=43 Score=32.43 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHH
Q 020972 253 EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFL 312 (319)
Q Consensus 253 ~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~ 312 (319)
-.|+.++.-....++..........+. ..||++|... +..+...+
T Consensus 272 Dia~SLL~mVs~nIgqiA~L~A~~~~i--------------k~Ivf~G~fi-r~~~~tm~ 316 (398)
T PLN02920 272 DVARSLLRMISNNIGQISYLNALRFGL--------------KRIFFGGFFI-RGHSYTMD 316 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CEEEEEeecc-cCcHHHHH
Confidence 456667776666666665555556665 4799998866 55444443
No 122
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=83.51 E-value=23 Score=31.40 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=69.6
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEee
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~ 102 (319)
++|+||--+..+.+++++.. +++++.+...... ..--+++...+++++.+++....++.+|.++.
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~--------~~~vl~~~~~~~~-------r~hse~l~~~i~~ll~~~~~~~~dld~iav~~ 66 (220)
T COG1214 2 KILAIDTSTSALSVALYLAD--------DGKVLAEHTEKLK-------RNHAERLMPMIDELLKEAGLSLQDLDAIAVAK 66 (220)
T ss_pred cEEEEEcChhhhhhheeecC--------CCcEEEEEEEecc-------ccHHHHHHHHHHHHHHHcCCCHHHCCEEEEcc
Confidence 58999988888887777642 6888888765321 12235677888889999988888898888864
Q ss_pred cCCCCchh---HHHHHHHHHhhCCCCceEEEeCcHHHHHHh
Q 020972 103 SGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (319)
Q Consensus 103 pG~~~~~~---~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g 140 (319)
||.+-.+ +.-+.+-|.-.++ +|++--|--.+.+..
T Consensus 67 -GPGSFTGlRIG~~~AkgLA~~l~--iplvgvssL~~~A~~ 104 (220)
T COG1214 67 -GPGSFTGLRIGVAFAKGLALALN--IPLVGVSSLEALAQG 104 (220)
T ss_pred -CCCcccchhhHHHHHHHHHHHcC--CCEEEeCHHHHHHHh
Confidence 4444322 4455566766666 899888877765543
No 123
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=83.13 E-value=16 Score=32.85 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=29.1
Q ss_pred ceEEEeCcHHHHHHhhc-C--C--CCCeEEEEECccceeEeEecCCc--EEeeCCC
Q 020972 126 VRLYVHNDALAALASGT-M--G--KLHGCVLIAGTGTIAYGFTEDGR--DARAAGA 174 (319)
Q Consensus 126 ~pv~v~NDa~aa~~g~~-~--g--~~~~v~v~~GTGigg~gii~dG~--~~raGg~ 174 (319)
..|+++||+.+-.++-. . + .-+-+++.+|+|+.- +..+|. .-|.||-
T Consensus 120 ~evFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGvSi--lkvtgpsqf~RvGGs 173 (342)
T COG5146 120 AEVFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGVSI--LKVTGPSQFERVGGS 173 (342)
T ss_pred HHHeeeeccccchhhhhhhhccccccceeeEeccCCeEE--EEecCcchhcccccc
Confidence 46899999876444321 1 2 245688999999843 445664 3466664
No 124
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=43 Score=31.72 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=78.1
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCC----Ccc----ccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS----NHN----SVGEDAARETIEKVMADALLKSGSNRSA 94 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~----~~~----~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 94 (319)
.+|||+---..|-+++++. +. ++........ ... +.-...-.++|..++++++++++++.++
T Consensus 2 ~iLGIEtScDeT~vaIv~~---------~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~d 71 (342)
T COG0533 2 IILGIETSCDETGVAIVDE---------EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLED 71 (342)
T ss_pred eEEEEEcccccceeEEEec---------cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 5899998888999999986 44 5543322111 000 1112334678999999999999998889
Q ss_pred cceEEEe-ecCCCCc-hhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC-CCCeEEEEEC
Q 020972 95 VRAVCLA-VSGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-KLHGCVLIAG 154 (319)
Q Consensus 95 i~~Igig-~pG~~~~-~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--~g-~~~~v~v~~G 154 (319)
|..|++. -||..-. .-+....+.|.-.++ .|++=.|-...-+++.. .+ ..+++.+.+.
T Consensus 72 ID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~--kPli~VnH~~gHi~a~~l~~~~~~p~v~LlVS 134 (342)
T COG0533 72 IDAIAVTAGPGLGGALLVGATAAKALALALN--KPLIPVNHLEGHIEAARLETGLAFPPVALLVS 134 (342)
T ss_pred CCEEEEecCCCchhHHHHHHHHHHHHHHHhC--CCEeecchHHHHHHHHHhccCCCCCcEEEEEe
Confidence 9998874 3554321 234566777877776 89999998886555432 22 4455555543
No 125
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=82.68 E-value=5.5 Score=37.43 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=41.2
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCC--CeEEEEecCC-CCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGC-SNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G--~il~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I 98 (319)
..++|||+|.++++++.+... .+ ++......+. .+....+.-.-.+.+.+.+++++++.+. +...+
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~--------~~~~~v~~~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~---~~k~v 71 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRS--------GDRYKLEHYAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGI---NTKKA 71 (348)
T ss_pred CcEEEEEeccCeEEEEEEEec--------CCceEEEEEEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCC---CcceE
Confidence 368999999999999998741 22 3333333221 1111111111123456667777776654 34456
Q ss_pred EEeecCC
Q 020972 99 CLAVSGV 105 (319)
Q Consensus 99 gig~pG~ 105 (319)
.+++|+.
T Consensus 72 ~~alp~~ 78 (348)
T TIGR01175 72 ATAVPGS 78 (348)
T ss_pred EEEecCC
Confidence 7788884
No 126
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.20 E-value=3 Score=39.12 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=41.2
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEE--EEecCC--CCccccCHHHHHHHHHHHHHHHHHHcCCCccccceE
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA--RAAAGC--SNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~--~~~~~~--~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~I 98 (319)
..+|||||.+++|++.... .|.-.. .....+ .+....+.-.=.+.+.+.+++++.++++... .+
T Consensus 11 ~~vGIdI~~~sVKvvqLs~---------~g~~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k---~a 78 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSR---------SGNRYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSK---NA 78 (354)
T ss_pred ceeeEeeccceEEEEEEcc---------cCCceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchh---hh
Confidence 6899999999999988874 343322 222111 1221111111134566777778888877543 34
Q ss_pred EEeecCC
Q 020972 99 CLAVSGV 105 (319)
Q Consensus 99 gig~pG~ 105 (319)
..++||-
T Consensus 79 a~AVP~s 85 (354)
T COG4972 79 ATAVPGS 85 (354)
T ss_pred hhhcCcc
Confidence 4677885
No 127
>PTZ00452 actin; Provisional
Probab=80.83 E-value=49 Score=31.67 Aligned_cols=90 Identities=21% Similarity=0.303 Sum_probs=56.3
Q ss_pred HHHHHHHHHHH-HcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCce-EEEeCcHHHHHHhhcCCCCCeEEEEE
Q 020972 76 TIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVLIA 153 (319)
Q Consensus 76 ~i~~~i~~~l~-~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~p-v~v~NDa~aa~~g~~~g~~~~v~v~~ 153 (319)
.+....+.++. +..+.+++ ..+-+.-|-...+.....+.+.|=+.|+ +| +++.+++.+++++ .|..++++|-+
T Consensus 81 ~~e~iw~~~f~~~l~v~p~~-~pvlitE~~~~~~~~Re~l~eilFE~~~--vp~~~~~~~~~lslya--~g~~tglVVDi 155 (375)
T PTZ00452 81 DIEIIWHHAFYNELCMSPED-QPVFMTDAPMNSKFNRERMTQIMFETFN--TPCLYISNEAVLSLYT--SGKTIGLVVDS 155 (375)
T ss_pred HHHHHHHHHHHhhcCCCccc-CceeeecCCCCCHHHHHHHHHHHhhccC--CceEEEechHHHHHHH--CCCceeeeecC
Confidence 34444444432 23344432 2333444444444455677777777787 65 7889999999886 35578999999
Q ss_pred CccceeEeEecCCcEEe
Q 020972 154 GTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 154 GTGigg~gii~dG~~~r 170 (319)
|.+..-.--+.||..+.
T Consensus 156 G~~~t~v~PV~dG~~l~ 172 (375)
T PTZ00452 156 GEGVTHCVPVFEGHQIP 172 (375)
T ss_pred CCCcceEEEEECCEEec
Confidence 99874444557887653
No 128
>PLN02902 pantothenate kinase
Probab=80.23 E-value=88 Score=33.46 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHH
Q 020972 252 DEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLV 309 (319)
Q Consensus 252 D~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~ 309 (319)
.-.|+.++.-....++..........+. ..|+++|... +..+.
T Consensus 320 eDiarSLL~mIs~NIGqiA~L~A~~~~i--------------krIvF~G~fI-r~h~~ 362 (876)
T PLN02902 320 EDISLSLLRMISYNIGQISYLNALRFGL--------------KRIFFGGFFI-RGHAY 362 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CEEEEeccee-cCCcc
Confidence 3457777777777777766666666665 4688888887 55443
No 129
>PTZ00466 actin-like protein; Provisional
Probab=78.50 E-value=58 Score=31.25 Aligned_cols=90 Identities=22% Similarity=0.284 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCce-EEEeCcHHHHHHhhcCCCCCeEEEEEC
Q 020972 76 TIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVLIAG 154 (319)
Q Consensus 76 ~i~~~i~~~l~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~p-v~v~NDa~aa~~g~~~g~~~~v~v~~G 154 (319)
.+..+.+.++++..+++.+. .|-+.-|-.........+.+.|=+.|+ .| +++.+++.+++++. |..++++|-+|
T Consensus 88 ~~e~iw~~~f~~l~v~~~~~-pvllte~~~~~~~~re~~~e~lFE~~~--~p~~~~~~~~~lsl~a~--g~~tglVVD~G 162 (380)
T PTZ00466 88 DMENIWIHVYNSMKINSEEH-PVLLTEAPLNPQKNKEKIAEVFFETFN--VPALFISIQAILSLYSC--GKTNGTVLDCG 162 (380)
T ss_pred HHHHHHHHHHhhcccCCccC-eEEEecCccccHHHHHHHHHHHhccCC--CCeEEEecchHHHHHhc--CCceEEEEeCC
Confidence 34444444444444443322 333444433333445566777767776 55 88899999998863 55789999999
Q ss_pred ccceeEeEecCCcEEe
Q 020972 155 TGTIAYGFTEDGRDAR 170 (319)
Q Consensus 155 TGigg~gii~dG~~~r 170 (319)
-+..-.-=+.||..+.
T Consensus 163 ~~~t~v~PV~~G~~~~ 178 (380)
T PTZ00466 163 DGVCHCVSIYEGYSIT 178 (380)
T ss_pred CCceEEEEEECCEEee
Confidence 9874443467887654
No 130
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=76.48 E-value=95 Score=31.77 Aligned_cols=86 Identities=16% Similarity=0.023 Sum_probs=48.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--CC-
Q 020972 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG- 144 (319)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--~g- 144 (319)
..++++...+..-+.+-.+.. -...+..+.|++|..-+.......++.-+. .+. .++.+-|+.-||+++-. ..
T Consensus 95 ~~~eeisa~~L~~lk~~ae~~--lg~~v~~~VItVPayF~d~qR~at~~A~~i-aGl-~vlrlinEPtAAAlayg~~~~~ 170 (579)
T COG0443 95 YTPEEISAMILTKLKEDAEAY--LGEKVTDAVITVPAYFNDAQRQATKDAARI-AGL-NVLRLINEPTAAALAYGLDKGK 170 (579)
T ss_pred eCHHHHHHHHHHHHHHHHHHh--hCCCcceEEEEeCCCCCHHHHHHHHHHHHH-cCC-CeEEEecchHHHHHHhHhccCC
Confidence 345655444333333222221 124678888999998776554445444433 332 47899999999988622 21
Q ss_pred CCCeEEEEECccc
Q 020972 145 KLHGCVLIAGTGT 157 (319)
Q Consensus 145 ~~~~v~v~~GTGi 157 (319)
....+++=+|-|.
T Consensus 171 ~~~vlV~DlGGGT 183 (579)
T COG0443 171 EKTVLVYDLGGGT 183 (579)
T ss_pred CcEEEEEEcCCCC
Confidence 2344555566654
No 131
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=76.43 E-value=21 Score=35.68 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=75.4
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC-----CCCc-cccCHHHHHHHHHHHHHHHHHHcC-CCccc
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG-----CSNH-NSVGEDAARETIEKVMADALLKSG-SNRSA 94 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~-----~~~~-~~~~~~~~~~~i~~~i~~~l~~~~-~~~~~ 94 (319)
..+..||+|.-+++.++++... ..=+++.+.+.. ..+. ...+ ++.+++..++++.+.+... ...++
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~------~~~~~l~~~k~~vrLgegl~~~g~L~-~eai~R~~~aL~~f~e~~~~~~~~~ 75 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITP------GSFQVLFREKRIVRLGEGLDATGNLS-EEAIERALSALKRFAELLDGFGAEE 75 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccC------CccchhhhhhhheehhcCccccCCcC-HHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 4688999999999999999621 012223222211 0111 0112 4455665666555444322 12234
Q ss_pred cceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEe---CcHHHHHHhh--cCC-CCCeEEEEECccceeE
Q 020972 95 VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVH---NDALAALASG--TMG-KLHGCVLIAGTGTIAY 160 (319)
Q Consensus 95 i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~---NDa~aa~~g~--~~g-~~~~v~v~~GTGigg~ 160 (319)
+ ..|+++-.=+..+...+...+++.++ .|+.|- -.|....+|. ..+ ..+++++=+|-||-=.
T Consensus 76 v--~~vATsA~R~A~N~~eFl~rv~~~~G--~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl 143 (492)
T COG0248 76 V--RVVATSALRDAPNGDEFLARVEKELG--LPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTEL 143 (492)
T ss_pred E--EEehhHHHHcCCCHHHHHHHHHHHhC--CceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEE
Confidence 3 33566655455556778888888897 788873 3455566653 234 6789999999999544
No 132
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=71.60 E-value=25 Score=36.81 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=62.1
Q ss_pred cCCC-cEEEEEEcCccc-eeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972 18 SGGR-EVILGLDGGTTS-TVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (319)
Q Consensus 18 ~~m~-~~~lGIDiGGTk-~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i 95 (319)
.|+. ..++|+|=|.-. ++++++|. +|+.+....+-+..+. ...+.....|.. ++.++.+ ++
T Consensus 325 aP~~~~~~lglDPg~rtG~k~Avvd~---------tGk~l~~~~Iyp~~p~-~~~~~~~~~l~~----l~~~~~V---e~ 387 (780)
T COG2183 325 APAKPKATLGLDPGFRTGCKVAVVDD---------TGKLLDTATIYPHPPV-NQSDKAEATLKD----LIRKYKV---EL 387 (780)
T ss_pred CCCCCcceeecCCccccccEEEEEcC---------CCceeceeEEEcCCCc-cchHHHHHHHHH----HHHHhCc---eE
Confidence 3443 378999988544 89999999 9999988877554443 123444444444 4455544 45
Q ss_pred ceEEEeecCCCCchhHHHHHHHHHhh-CCCCceEEEeCcHHHHHH
Q 020972 96 RAVCLAVSGVNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAALA 139 (319)
Q Consensus 96 ~~Igig~pG~~~~~~~~~l~~~L~~~-~~~~~pv~v~NDa~aa~~ 139 (319)
.+||.|.+-.. ...-+.+.|++. ... ++..|-|++-+..+
T Consensus 388 iaIGngTaSre---te~fv~~vl~~~~~~~-~~~viVsEagAsvY 428 (780)
T COG2183 388 IAIGNGTASRE---TEKFVADVLKELPKEK-VLKVIVSEAGASVY 428 (780)
T ss_pred EEEecCCcchh---HHHHHHHHHHhccCCC-CcEEEEcccccchh
Confidence 67777665533 223344555554 222 67888899887655
No 133
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=70.79 E-value=31 Score=29.09 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=37.9
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCe---EEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPV---LARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~i---l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (319)
.+||||-|-+++=+++++. +++. +....+.+. .. .+..+-+..|.+.+.++++++.
T Consensus 3 ~iLGIDPgl~~tG~avi~~---------~~~~~~~~~~G~i~t~-~~-~~~~~Rl~~I~~~l~~~i~~~~ 61 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEV---------EGRRLSYVASGVIRTP-SD-LDLPERLKQIYDGLSELIDEYQ 61 (164)
T ss_pred EEEEEccccCceeEEEEEe---------cCCeEEEEEeeEEECC-CC-CCHHHHHHHHHHHHHHHHHHhC
Confidence 5999999999999999997 5552 333333222 11 2445556777788888887763
No 134
>PRK13328 pantothenate kinase; Reviewed
Probab=69.82 E-value=48 Score=30.03 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=17.1
Q ss_pred EEEEEcCccceeEEEEeC
Q 020972 24 ILGLDGGTTSTVCICMPV 41 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~ 41 (319)
+|-||+|-|.+|+++++.
T Consensus 3 ~LliDiGNTriKwa~~~~ 20 (255)
T PRK13328 3 ILLIDAGNSRIKWAWADA 20 (255)
T ss_pred EEEEEeCccceeEEEEcC
Confidence 899999999999999996
No 135
>PRK13411 molecular chaperone DnaK; Provisional
Probab=68.69 E-value=1.5e+02 Score=30.84 Aligned_cols=85 Identities=15% Similarity=0.027 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC----
Q 020972 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---- 143 (319)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---- 143 (319)
+++++...+..-+.+..+. .+ .++..+.|++|-.-+......+++..+.. +. ..+.+-|+..||+++-..
T Consensus 109 ~peei~a~iL~~lk~~ae~~lg---~~v~~~VITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAl~y~~~~~~ 183 (653)
T PRK13411 109 TPQEISAMILQKLKQDAEAYLG---EPVTQAVITVPAYFTDAQRQATKDAGTIA-GL-EVLRIINEPTAAALAYGLDKQD 183 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCCCcHHHHHHHHHHHHc-CC-CeEEEecchHHHHHHhcccccC
Confidence 4555555444333332222 22 35677889999987665555555554433 32 358899999998885321
Q ss_pred CCCCeEEEEECccce
Q 020972 144 GKLHGCVLIAGTGTI 158 (319)
Q Consensus 144 g~~~~v~v~~GTGig 158 (319)
.....+++=+|.|.-
T Consensus 184 ~~~~vlV~DlGgGT~ 198 (653)
T PRK13411 184 QEQLILVFDLGGGTF 198 (653)
T ss_pred CCCEEEEEEcCCCeE
Confidence 123466667777753
No 136
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=68.55 E-value=16 Score=30.18 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=34.5
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCe---EEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPV---LARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~i---l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (319)
+||||-|-+++-+++++. +++- +....+.+... .+..+-+..|.+.+.++++++.
T Consensus 1 ILGIDPgl~~tG~avi~~---------~~~~~~~i~~G~I~t~~~--~~~~~Rl~~I~~~l~~li~~~~ 58 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE---------DGGKLRLIDYGTIKTSSK--DSLPERLKEIYEELEELIEEYN 58 (149)
T ss_dssp EEEEE--SSEEEEEEEEE---------ETTEEEEEEEEEEE---S----HHHHHHHHHHHHHHHHHHH-
T ss_pred CEEECCCCCCeeEEEEEe---------eCCEEEEEEeCeEECCCC--CCHHHHHHHHHHHHHHHHHhhC
Confidence 699999999999999997 5533 34444333211 3456667778888888888764
No 137
>PTZ00004 actin-2; Provisional
Probab=68.50 E-value=99 Score=29.53 Aligned_cols=69 Identities=22% Similarity=0.295 Sum_probs=47.4
Q ss_pred EEEeecCCCCchhHHHHHHHHHhhCCCCce-EEEeCcHHHHHHhhcCCCCCeEEEEECccceeEeEecCCcEEe
Q 020972 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 98 Igig~pG~~~~~~~~~l~~~L~~~~~~~~p-v~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg~gii~dG~~~r 170 (319)
+-+.-|-...+.....+.+.|=+.|+ .| +.+.+++.+++++. |..++++|-+|.+..-.--+.||.+..
T Consensus 104 vllte~~~~~~~~r~~~~e~lFE~~~--~~~~~~~~~~~ls~ya~--g~~tglVVDiG~~~t~v~pV~dG~~l~ 173 (378)
T PTZ00004 104 VLLTEAPLNPKANREKMTQIMFETHN--VPAMYVAIQAVLSLYAS--GRTTGIVLDSGDGVSHTVPIYEGYSLP 173 (378)
T ss_pred ceeecCCCCcHHHHHHHHHHHHhhcC--CceEEeeccHHHHHHhc--CCceEEEEECCCCcEEEEEEECCEEee
Confidence 33444444444445567777777787 55 78899999988863 557899999998864444567887654
No 138
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=68.29 E-value=27 Score=28.57 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=24.8
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEec
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA 60 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~ 60 (319)
...++|||=| |.+-++++|+ +|+++...+.
T Consensus 31 ~~lIVGiDPG-~ttgiAildL---------~G~~l~l~S~ 60 (138)
T PF04312_consen 31 RYLIVGIDPG-TTTGIAILDL---------DGELLDLKSS 60 (138)
T ss_pred CCEEEEECCC-ceeEEEEEec---------CCcEEEEEee
Confidence 4689999965 5678899999 9999988764
No 139
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=66.19 E-value=14 Score=34.84 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=33.4
Q ss_pred EEEcCccceeEEEEeCccCCCCCCCCCC--eE-EEEecCC-CCccccCHHHHHHHHHHHHHHHHHHcCCCccccceEEEe
Q 020972 26 GLDGGTTSTVCICMPVISMSDSLPDPLP--VL-ARAAAGC-SNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (319)
Q Consensus 26 GIDiGGTk~~~~l~d~~~~~~~~~~~G~--il-~~~~~~~-~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig 101 (319)
|||+|.+.+|++.+.. .++ .+ .....+. .+....+.-.=.+.+.+.+++++++.+... ..+.++
T Consensus 1 GiDiG~~siK~v~l~~---------~~~~~~l~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~~---k~v~~a 68 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSK---------KGNRFQLEAFASIPLPPGAISDGEIVDPEALAEALKELLKENKIKG---KKVVLA 68 (340)
T ss_dssp EEEE-SSEEEEEEEET---------TTT--EEEEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT-------EEEEE
T ss_pred CeecCCCeEEEEEEEE---------cCCccEEEEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCCC---CeEEEE
Confidence 8999999999998886 332 22 3233321 111111110112346666777777766533 234466
Q ss_pred ecCC
Q 020972 102 VSGV 105 (319)
Q Consensus 102 ~pG~ 105 (319)
+||.
T Consensus 69 ip~~ 72 (340)
T PF11104_consen 69 IPGS 72 (340)
T ss_dssp E-GG
T ss_pred eCCC
Confidence 6774
No 140
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=65.84 E-value=1.2e+02 Score=28.35 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=43.4
Q ss_pred eEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccceeEeEe
Q 020972 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFT 163 (319)
Q Consensus 97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGigg~gii 163 (319)
.+.+++|-..+......+.+.++. ++. ..+.+.|+..+|+++... .....+++-+|.|.--..++
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~~-ag~-~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v 167 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESALS-AGA-REVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVI 167 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHH-cCC-CeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEE
Confidence 466888987665554556665544 442 458999999999886432 12457888899888655555
No 141
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=63.64 E-value=17 Score=36.09 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=26.8
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEe
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA 59 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~ 59 (319)
+.|=+++|+|.|.+++.++|+. +|+++....
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~--------sgevv~t~~ 193 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLK--------SGEVVATVI 193 (614)
T ss_pred eeeeeEEecccceeeeEEEecc--------CCcEEEeee
Confidence 4589999999999999999984 788887664
No 142
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=63.59 E-value=1.8e+02 Score=29.87 Aligned_cols=63 Identities=19% Similarity=0.071 Sum_probs=39.7
Q ss_pred ccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccce
Q 020972 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTI 158 (319)
Q Consensus 94 ~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGig 158 (319)
.+..+.|++|-.-+......+.+..+. .+. ..+.+.|+..||+++-.. ..+..+++=+|-|.-
T Consensus 132 ~v~~~VItVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~ 197 (627)
T PRK00290 132 KVTEAVITVPAYFNDAQRQATKDAGKI-AGL-EVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTF 197 (627)
T ss_pred CCceEEEEECCCCCHHHHHHHHHHHHH-cCC-ceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeE
Confidence 466778889988765555555554443 231 347899999998875321 234566677777653
No 143
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=62.28 E-value=19 Score=29.06 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=24.9
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~ 61 (319)
++|||++-.+..+++++. .|+.+...+.+
T Consensus 1 ~vGiDv~k~~~~v~v~~~---------~~~~~~~~~~~ 29 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDP---------NGEKLRRFKFE 29 (144)
T ss_pred eEEEEcccCeEEEEEEcC---------CCcEEEEEEEe
Confidence 689999999999999998 88777777764
No 144
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=61.67 E-value=42 Score=27.77 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=36.4
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCe---EEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPV---LARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~i---l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (319)
+||||-|-+++=+++++. ++.. +....+.+... .+..+-+..|.+.+.+++.+..
T Consensus 2 ILGIDPGl~~~G~av~~~---------~~~~~~~~~~g~i~t~~~--~~~~~rl~~I~~~l~~~i~~~~ 59 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQ---------EGRKLIYLASGVIRTSSD--APLPSRLKTIYDGLNEVIDQFQ 59 (154)
T ss_pred EEEEccCcCceEEEEEEe---------eCCeEEEEEeeEEECCCC--CCHHHHHHHHHHHHHHHHHHhC
Confidence 799999999999999986 3322 23333332211 2445556778888888887663
No 145
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=61.19 E-value=2e+02 Score=29.51 Aligned_cols=87 Identities=11% Similarity=-0.036 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---C
Q 020972 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---G 144 (319)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g 144 (319)
+++++...+..-+.+..+. .+ .++..+.|++|-.-+......+++..+.. +. ..+.+-|+..||+++-.. .
T Consensus 117 speei~a~iL~~lk~~ae~~lg---~~v~~aVITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAlay~~~~~~ 191 (595)
T PRK01433 117 RIPEIAAEIFIYLKNQAEEQLK---TNITKAVITVPAHFNDAARGEVMLAAKIA-GF-EVLRLIAEPTAAAYAYGLNKNQ 191 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCCCHHHHHHHHHHHHHc-CC-CEEEEecCcHHHHHHHhcccCC
Confidence 4566555544444443332 22 35677889999987765555566555433 31 357899999988885221 1
Q ss_pred CCCeEEEEECccceeE
Q 020972 145 KLHGCVLIAGTGTIAY 160 (319)
Q Consensus 145 ~~~~v~v~~GTGigg~ 160 (319)
....+++=+|-|.--.
T Consensus 192 ~~~vlV~DlGGGT~Dv 207 (595)
T PRK01433 192 KGCYLVYDLGGGTFDV 207 (595)
T ss_pred CCEEEEEECCCCcEEE
Confidence 2345667777775433
No 146
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=61.01 E-value=2e+02 Score=29.54 Aligned_cols=63 Identities=17% Similarity=0.022 Sum_probs=40.4
Q ss_pred ccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhc--C-CCCCeEEEEECccce
Q 020972 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--M-GKLHGCVLIAGTGTI 158 (319)
Q Consensus 94 ~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~--~-g~~~~v~v~~GTGig 158 (319)
.+..+.|++|-.-+......+++..+.. +. ..+.+-|+..||+++-. . ..+..+++=+|-|.-
T Consensus 148 ~v~~~VITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~ 213 (616)
T PRK05183 148 ELDGAVITVPAYFDDAQRQATKDAARLA-GL-NVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTF 213 (616)
T ss_pred CcceEEEEECCCCCHHHHHHHHHHHHHc-CC-CeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeE
Confidence 4667889999987665555666655443 42 35789999999887521 1 123456666776653
No 147
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=60.09 E-value=1.2e+02 Score=28.84 Aligned_cols=92 Identities=18% Similarity=0.196 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHH-cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEE
Q 020972 75 ETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIA 153 (319)
Q Consensus 75 ~~i~~~i~~~l~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~ 153 (319)
+.+.+.++.++.. ...++. -..+-+..|-...+.....+.+.|=+.|+. ..+.+.+++-+++++. |..++++|-+
T Consensus 74 ~~~e~i~~~~~~~~l~~~~~-~~~vll~~~~~~~~~~r~~l~e~lfE~~~~-~~v~~~~~~~~a~~~~--g~~tglVVD~ 149 (393)
T PF00022_consen 74 DALEEIWDYIFSNLLKVDPS-DHPVLLTEPPFNPRSQREKLAEILFEKFGV-PSVYFIPSPLLALYAS--GRTTGLVVDI 149 (393)
T ss_dssp HHHHHHHHHHHHTTT-SSGG-GSEEEEEESTT--HHHHHHHHHHHHHTS---SEEEEEEHHHHHHHHT--TBSSEEEEEE
T ss_pred cccccccccccccccccccc-cceeeeeccccCCchhhhhhhhhhhccccc-ceeeeeeccccccccc--cccccccccc
Confidence 3455556666654 233332 334666677665555556777777777872 3499999999888863 5578999999
Q ss_pred CccceeEeEecCCcEEe
Q 020972 154 GTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 154 GTGigg~gii~dG~~~r 170 (319)
|....-..-+.||.++.
T Consensus 150 G~~~t~v~pV~dG~~~~ 166 (393)
T PF00022_consen 150 GYSSTSVVPVVDGYVLP 166 (393)
T ss_dssp SSS-EEEEEEETTEE-G
T ss_pred ceeeeeeeeeeeccccc
Confidence 98865445568997753
No 148
>PLN03184 chloroplast Hsp70; Provisional
Probab=59.63 E-value=2.3e+02 Score=29.61 Aligned_cols=63 Identities=17% Similarity=0.041 Sum_probs=39.5
Q ss_pred ccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccce
Q 020972 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTI 158 (319)
Q Consensus 94 ~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGig 158 (319)
.+..+.|++|-.-+......+++..+.. +. ..+.+-|+..||+++-.. ..+..+++=+|-|.-
T Consensus 171 ~v~~~VITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~ 236 (673)
T PLN03184 171 KVTKAVITVPAYFNDSQRTATKDAGRIA-GL-EVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTF 236 (673)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHHC-CC-CeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeE
Confidence 4667778888876655545555554433 32 357899999998875321 223456666777653
No 149
>CHL00094 dnaK heat shock protein 70
Probab=59.59 E-value=2.2e+02 Score=29.36 Aligned_cols=68 Identities=16% Similarity=0.040 Sum_probs=41.5
Q ss_pred ccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcC---CCCCeEEEEECccceeEeEe
Q 020972 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFT 163 (319)
Q Consensus 94 ~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~---g~~~~v~v~~GTGigg~gii 163 (319)
++..+.|.+|-.-+......+.+..+. .+. ..+.+-|+..||+++-.. ..+..+++=+|.|.--..++
T Consensus 134 ~v~~~VItVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~ 204 (621)
T CHL00094 134 TVTQAVITVPAYFNDSQRQATKDAGKI-AGL-EVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSIL 204 (621)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHH-cCC-ceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEE
Confidence 456677888987665444455555443 332 357899999998885321 22346667777776444443
No 150
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=58.95 E-value=37 Score=28.46 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=37.0
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCe---EEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPV---LARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~i---l~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (319)
+||||=|-+.|=+++++. ++.- +....+.+. . .+..+-+..|.+.+.++++++.
T Consensus 1 ILGIDPGl~~tG~gvi~~---------~~~~~~~v~~G~I~t~-~--~~~~~RL~~I~~~l~~~i~~y~ 57 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQ---------VGRQLSYLGSGCIRTK-V--DDLPSRLKLIYAGVTEIITQFQ 57 (156)
T ss_pred CEeECcccccccEEEEEe---------cCCeEEEEEeeEEECC-C--CCHHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999997 4443 333333222 2 3456667778888888887764
No 151
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=57.33 E-value=80 Score=31.24 Aligned_cols=100 Identities=19% Similarity=0.269 Sum_probs=59.0
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC---------CCC---cc-----ccCHH-HHHHHHHHHHHH
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG---------CSN---HN-----SVGED-AARETIEKVMAD 83 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~---------~~~---~~-----~~~~~-~~~~~i~~~i~~ 83 (319)
..+||+|.+.-.+|++++|. +.+++....+. +.+ .. -..|- -+++.+--+++
T Consensus 9 ~~fLG~DlSTQqlKaviids---------~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~- 78 (545)
T KOG2531|consen 9 RSFLGFDLSTQQLKAVIIDS---------NLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLD- 78 (545)
T ss_pred ceeeeeecccceeEEEEEcC---------CccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHH-
Confidence 36999999999999999999 88888765442 100 00 01122 34444433333
Q ss_pred HHHHcCCCccccceEEEeecCCCCchh-----------------HHHHHHHHHhhCC-CCceEEEeCcHH
Q 020972 84 ALLKSGSNRSAVRAVCLAVSGVNHPTD-----------------QQRILNWLRDIFP-GNVRLYVHNDAL 135 (319)
Q Consensus 84 ~l~~~~~~~~~i~~Igig~pG~~~~~~-----------------~~~l~~~L~~~~~-~~~pv~v~NDa~ 135 (319)
-+.+++.+..+|. +++|....++ ...|.+.|+..|. .-.|++.|.-..
T Consensus 79 kl~~~~~d~~kV~----aiSGagQQHGsVyWs~ga~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTt 144 (545)
T KOG2531|consen 79 KLREAGFDLSKVM----AISGAGQQHGSVYWSKGAENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTT 144 (545)
T ss_pred HHHHcCCCHHHhh----hhcccccccceeeehhhhHHHHhcCChhhHHHHHHHHhhcccCCCcccccchH
Confidence 3445566555664 3455543321 2467888888763 015898886543
No 152
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=56.32 E-value=1.7e+02 Score=27.24 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=48.4
Q ss_pred eEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCC---CCCeEEEEECccceeEeEecCCcEEe
Q 020972 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g---~~~~v~v~~GTGigg~gii~dG~~~r 170 (319)
.+.+++|-..+......+...++. ++. ..+.+-|+..+|+++.... ....+++=+|.|.--..++..|.+..
T Consensus 97 ~~vitvP~~~~~~~r~~~~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~ 171 (336)
T PRK13928 97 RIMICIPTGITSVEKRAVREAAEQ-AGA-KKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVT 171 (336)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH-cCC-CceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEE
Confidence 466788887766556667776655 442 3588999999988864321 23467788898886666776776554
No 153
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.58 E-value=55 Score=29.77 Aligned_cols=49 Identities=8% Similarity=0.051 Sum_probs=34.1
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchh
Q 020972 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILF 303 (319)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~ 303 (319)
-+++.+.+.+|.. |+-.++..+..++.-++.+.-... +...++|.|.+-
T Consensus 231 rEEli~~~~k~ek-arlaldtlal~vamEIagL~~~~~-------------~~d~v~laGsvg 279 (332)
T COG4020 231 REELIQRYGKGEK-ARLALDTLALLVAMEIAGLLMVVY-------------GCDGVVLAGSVG 279 (332)
T ss_pred HHHHHHHhcCChh-hhHHHHHHHHHHHHHHhhhhceec-------------CCceEEEecccc
Confidence 3567888877666 888888877777777777653332 223588888876
No 154
>PTZ00280 Actin-related protein 3; Provisional
Probab=52.02 E-value=1.4e+02 Score=28.89 Aligned_cols=71 Identities=25% Similarity=0.337 Sum_probs=49.7
Q ss_pred EEEeecCCCCchhHHHHHHHHHhhCCCCce-EEEeCcHHHHHHhhcC--------CCCCeEEEEECccceeEeEecCCcE
Q 020972 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTM--------GKLHGCVLIAGTGTIAYGFTEDGRD 168 (319)
Q Consensus 98 Igig~pG~~~~~~~~~l~~~L~~~~~~~~p-v~v~NDa~aa~~g~~~--------g~~~~v~v~~GTGigg~gii~dG~~ 168 (319)
+-+.-|-.........+.+.|=+.|+ .| +++.+++.+++++... |..++++|-+|.+..-..-+.+|..
T Consensus 105 vllte~~~~~~~~Re~l~e~lFE~~~--~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~ 182 (414)
T PTZ00280 105 FILTEPPMNPPENREYTAEIMFETFN--VKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYV 182 (414)
T ss_pred eEEeeCCCCcHHHHHHHHHHHhhccC--CCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEE
Confidence 44555555544455667777777786 55 7899999999887521 5668999999999754445568876
Q ss_pred Ee
Q 020972 169 AR 170 (319)
Q Consensus 169 ~r 170 (319)
..
T Consensus 183 l~ 184 (414)
T PTZ00280 183 IG 184 (414)
T ss_pred cc
Confidence 54
No 155
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=51.52 E-value=27 Score=32.20 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=27.9
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~ 61 (319)
.+++.||=|.|++|+-+++. +|+++.+.+..
T Consensus 5 ~~~i~iDWGTT~~R~wL~~~---------dg~~l~~r~~~ 35 (306)
T COG3734 5 PAYIAIDWGTTNLRAWLVRG---------DGAVLAERRSE 35 (306)
T ss_pred ceEEEEecCCccEEEEEEcC---------Ccceeeeeccc
Confidence 47999999999999999999 99999988754
No 156
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=50.55 E-value=1.7e+02 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.100 Sum_probs=23.4
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~ 61 (319)
.+-||+|+..|.+.++. +|.++..+..+
T Consensus 190 ~~lvdiG~~~t~l~i~~----------~g~~~~~r~i~ 217 (348)
T TIGR01175 190 AALVDIGATSSTLNLLH----------PGRMLFTREVP 217 (348)
T ss_pred EEEEEECCCcEEEEEEE----------CCeEEEEEEee
Confidence 88999999999999987 57777766654
No 157
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=50.09 E-value=11 Score=34.39 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=26.1
Q ss_pred CccceeEeEecCCcEEeeCCCCCccCC-cCChHHHHHHHH
Q 020972 154 GTGTIAYGFTEDGRDARAAGAGPILGD-WGSGYGIAAQAL 192 (319)
Q Consensus 154 GTGigg~gii~dG~~~raGg~Ghl~gd-~Gsa~~iG~~~~ 192 (319)
|.|+.--|-+..|....+|++||+..+ .|.-+.||+..+
T Consensus 134 G~giv~~G~~~~G~~g~AGEiGh~~v~~~g~~c~CG~~Gc 173 (291)
T PRK05082 134 GGGIVLNGKLLTGPGGLAGHIGHTLADPHGPVCGCGRRGC 173 (291)
T ss_pred ceEEEECCEEeeCCCCccccccceEecCCCCCCCCCCcCc
Confidence 444444455567888889999999764 455566666544
No 158
>PRK13329 pantothenate kinase; Reviewed
Probab=49.97 E-value=1.8e+02 Score=26.28 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=16.2
Q ss_pred EEEEEcCccceeEEEEe
Q 020972 24 ILGLDGGTTSTVCICMP 40 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d 40 (319)
+|-||+|-|.+|+++++
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 78899999999999998
No 159
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=47.72 E-value=96 Score=31.83 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.9
Q ss_pred cEEEEEEcCccceeEEEEeC
Q 020972 22 EVILGLDGGTTSTVCICMPV 41 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~ 41 (319)
.++|-||+|-|.+|+++++.
T Consensus 338 ~~~LliD~GNTriKwa~~~~ 357 (592)
T PRK13325 338 ERFLLLDGGNSRLKWAWVEN 357 (592)
T ss_pred ceEEEEEcCcCceeEEEEcC
Confidence 46899999999999999985
No 160
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=46.82 E-value=1.1e+02 Score=29.99 Aligned_cols=67 Identities=10% Similarity=0.008 Sum_probs=36.7
Q ss_pred CcEEEEEEcCccceeEEEEeCccC--CCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHc
Q 020972 21 REVILGLDGGTTSTVCICMPVISM--SDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~--~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~ 88 (319)
+.|.+-||.|.|.+|+=++..+-. .++..-..+.....+ |.......+|++..+.|..+++.+.+..
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~k-PGLSsfaddp~~aA~Sl~~LLd~A~~~v 134 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVK-PGLSSFADDPEEAANSLRPLLDVAEAFV 134 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcC-CcccccCCChHHHHHhHHHHHHHHHhhC
Confidence 469999999999999888765200 000000111112222 2222222577777777777776665543
No 161
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=44.82 E-value=20 Score=33.07 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=14.6
Q ss_pred EEEEEEcCccceeEEEEe
Q 020972 23 VILGLDGGTTSTVCICMP 40 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d 40 (319)
-.|.+|+|||.|.++++.
T Consensus 78 ~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE
T ss_pred CEEEEeCCCCEEEEEEEE
Confidence 489999999999999986
No 162
>PTZ00281 actin; Provisional
Probab=44.38 E-value=2.9e+02 Score=26.33 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=55.4
Q ss_pred HHHHHHHHHH-HHcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCce-EEEeCcHHHHHHhhcCCCCCeEEEEE
Q 020972 76 TIEKVMADAL-LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVLIA 153 (319)
Q Consensus 76 ~i~~~i~~~l-~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~p-v~v~NDa~aa~~g~~~g~~~~v~v~~ 153 (319)
.+.+.++.++ +...+++.+ ..+-+.-|-...+.....+.+.|=+.|+ .| +++.+++.+++++. |..++++|-+
T Consensus 82 ~~e~l~~~~f~~~l~v~p~~-~pvllte~~~~~~~~re~l~e~lFE~~~--vp~~~~~~~~~ls~ya~--g~~tglVVDi 156 (376)
T PTZ00281 82 DMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSLYAS--GRTTGIVMDS 156 (376)
T ss_pred HHHHHHHHHHHhhccCCCcc-CeEEEecCCCCcHHHHHHHHHHHhcccC--CceeEeeccHHHHHHhc--CCceEEEEEC
Confidence 3444444443 233444433 2344544444444445667777767776 55 88999999998863 5578999999
Q ss_pred CccceeEeEecCCcEEe
Q 020972 154 GTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 154 GTGigg~gii~dG~~~r 170 (319)
|.+..-.-=+.||..+.
T Consensus 157 G~~~t~v~PV~dG~~~~ 173 (376)
T PTZ00281 157 GDGVSHTVPIYEGYALP 173 (376)
T ss_pred CCceEEEEEEEecccch
Confidence 99874333357887653
No 163
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=43.48 E-value=79 Score=31.30 Aligned_cols=51 Identities=20% Similarity=0.042 Sum_probs=31.3
Q ss_pred EEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHH-HHHHHHHHHHHcC
Q 020972 27 LDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET-IEKVMADALLKSG 89 (319)
Q Consensus 27 IDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~-i~~~i~~~l~~~~ 89 (319)
+|+|.|.|++.++|.. +++++...+..+.. ..+.+..- +.++++++.++.+
T Consensus 1 ~DiGST~Tk~~a~~~~--------~~~~~~~~~~~tpT----t~~dv~~G~~~~a~~~l~~~~~ 52 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIE--------GDAILATAHDITPI----ESDHLAGGFFNKANEKLNEDLA 52 (463)
T ss_pred CCccccceEEEEEecC--------CCcEEEEEeccCcc----chhhhhcchHHHHHHHHHHhcC
Confidence 5999999999999872 46666666543211 12344333 5566666655543
No 164
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=42.50 E-value=43 Score=29.70 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEE
Q 020972 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY 129 (319)
Q Consensus 69 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~ 129 (319)
+++.+-..+...+++.+++- ....|.+|++|..+ +.+.|++.|+ +||+
T Consensus 154 ~~~~~~~~l~~~~~~a~~ed-----gAeaIiLGCAGms~------la~~Lq~~~g--vPVI 201 (230)
T COG4126 154 PPEEAEALLVIEAAEALKED-----GAEAIILGCAGMSD------LADQLQKAFG--VPVI 201 (230)
T ss_pred ChHHHHHHHHHHHHHHhhhc-----CCCEEEEcCccHHH------HHHHHHHHhC--CCcc
Confidence 45666666777777777653 45678999999764 6888999997 8875
No 165
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=41.27 E-value=1.3e+02 Score=27.33 Aligned_cols=26 Identities=19% Similarity=-0.055 Sum_probs=20.4
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEe
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA 59 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~ 59 (319)
.+-||+||..|.+.++. +|+++....
T Consensus 137 ~~vvDIGggtt~i~v~~----------~g~~~~~~~ 162 (267)
T PRK15080 137 GAVVDIGGGTTGISILK----------DGKVVYSAD 162 (267)
T ss_pred cEEEEeCCCcEEEEEEE----------CCeEEEEec
Confidence 57899999999998886 477766544
No 166
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.84 E-value=2.5e+02 Score=26.67 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=56.5
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCcc-------------------------ccCH--------
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN-------------------------SVGE-------- 70 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~-------------------------~~~~-------- 70 (319)
++-+|||.|.+.+.++- +|+++.++..+-...+ ..++
T Consensus 195 vav~~Igat~s~l~vi~----------~gk~ly~r~~~~g~~Qlt~~i~r~~~L~~~~a~~~k~~~~~P~~y~~~vl~~f 264 (354)
T COG4972 195 VAVFDIGATSSELLVIQ----------DGKILYTREVPVGTDQLTQEIQRAYSLTEEKAEEIKRGGTLPTDYGSEVLRPF 264 (354)
T ss_pred heeeeecccceEEEEEE----------CCeeeeEeeccCcHHHHHHHHHHHhCCChhHhHHHHhCCCCCCchhHHHHHHH
Confidence 67889999999988765 6888887765421000 0111
Q ss_pred -HHHHHHHHHHHHHHHHHcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHH
Q 020972 71 -DAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALA 136 (319)
Q Consensus 71 -~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~a 136 (319)
+++.+.|.+.++-++...+ ..+|..|.++=+|..- ..|.+.++++++ .|+.+.|-...
T Consensus 265 ~~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l----~gL~~~i~qrl~--~~t~vanPf~~ 323 (354)
T COG4972 265 LGELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASL----EGLAAAIQQRLS--IPTEVANPFAY 323 (354)
T ss_pred HHHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcch----hhHHHHHHHHhC--CCeEeeCHHHH
Confidence 1222233333333333332 2357777665555432 357888999997 89999998543
No 167
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=37.45 E-value=37 Score=31.94 Aligned_cols=19 Identities=32% Similarity=0.172 Sum_probs=17.0
Q ss_pred cEEEEEEcCccceeEEEEe
Q 020972 22 EVILGLDGGTTSTVCICMP 40 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d 40 (319)
.-.|.+|+|||.+++.++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 3589999999999999986
No 168
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=37.13 E-value=84 Score=25.04 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=30.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeecC
Q 020972 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (319)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~pG 104 (319)
.+++++.+...+++++++++.++.+++|.+|-+.+.-
T Consensus 13 n~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T~ 49 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILERNELSPEDIVSIIFTVTP 49 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-T
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 4689999999999999999999999999999887755
No 169
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=37.09 E-value=1.5e+02 Score=31.18 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=13.4
Q ss_pred ccEEEEcchhhhcHHHHHHHHh
Q 020972 294 VPLLMENILFLLSWLVVFLKLI 315 (319)
Q Consensus 294 ~~ivl~Gg~~~~~~~~~~~~~~ 315 (319)
.+++++|||| .+..+...+.
T Consensus 660 ~~VvLSGGVf--qN~~L~~~L~ 679 (711)
T TIGR00143 660 HKIVISGGVF--YNRLLLERLA 679 (711)
T ss_pred CeEEEeccHH--HHHHHHHHHH
Confidence 4799999999 3444444443
No 170
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=36.37 E-value=3.3e+02 Score=24.63 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=75.2
Q ss_pred EEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEec----CCCCcc--ccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 020972 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA----GCSNHN--SVGEDAARETIEKVMADALLKSGSNRSAVR 96 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~----~~~~~~--~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~ 96 (319)
..+|++....|+-++++. ++++++-.+. ||..-. ..+...-.+.+..++++.++++++..++|.
T Consensus 3 ialG~EGSANKlGvGiv~----------~~~iLaN~R~TYitPPG~GFlP~~TA~HHr~~il~Lv~~al~ea~v~~~diD 72 (336)
T KOG2708|consen 3 IALGLEGSANKLGVGIVR----------DGKILANPRHTYITPPGEGFLPRDTARHHRAWILGLVKQALEEAGVTSDDID 72 (336)
T ss_pred eEEecccccccceeeEEe----------cceeecCccccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHcCCChhhCC
Confidence 578888888899888886 5888764322 221110 123344466788999999999999999998
Q ss_pred eEEEe-ecCCCCchhH-HHHHHHHHhhCCCCceEEEeCcHHHHHH--h-hcCCCCCeEEEEECcc
Q 020972 97 AVCLA-VSGVNHPTDQ-QRILNWLRDIFPGNVRLYVHNDALAALA--S-GTMGKLHGCVLIAGTG 156 (319)
Q Consensus 97 ~Igig-~pG~~~~~~~-~~l~~~L~~~~~~~~pv~v~NDa~aa~~--g-~~~g~~~~v~v~~GTG 156 (319)
-|+.- -||...|-.- ......|....+ .|+.-.|-.-. .+ | +--|.+|-+++.+..|
T Consensus 73 ~icyTKGPGmgaPL~~vaivaRtlsllw~--kPlv~VNHCig-HIEMGR~iTgA~nPvvLYvSGG 134 (336)
T KOG2708|consen 73 CICYTKGPGMGAPLSVVAIVARTLSLLWN--KPLVGVNHCIG-HIEMGREITGAQNPVVLYVSGG 134 (336)
T ss_pred EEEEcCCCCCCCchhhHHHHHHHHHHHhC--CCcccchhhhh-hhhhcceeccCCCCEEEEEeCC
Confidence 88753 3555544332 234556666665 78887776642 22 1 1135566665555433
No 171
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=35.56 E-value=2.6e+02 Score=25.29 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHH---HHHHcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH---hh--c
Q 020972 71 DAARETIEKVMAD---ALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SG--T 142 (319)
Q Consensus 71 ~~~~~~i~~~i~~---~l~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~---g~--~ 142 (319)
++.++++.+++++ .++..++ +++. +++.+.+=+..+...+.+.+++.++ .++.|-+...=|.+ |. .
T Consensus 34 ~e~i~r~~~~L~~f~~~~~~~~v--~~i~--~vATsA~R~A~N~~~~~~~i~~~tG--i~i~iIsgeeEa~l~~~gv~~~ 107 (285)
T PF02541_consen 34 EEAIERAIDALKRFKEILKDYGV--EKIR--AVATSALREAKNSDEFLDRIKKETG--IDIEIISGEEEARLSFLGVLSS 107 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTG--SEEE--EEEEHHHHHSTTHHHHHHHHHHHHS--S-EEEE-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC--CEEE--EEhhHHHHhCcCHHHHHHHHHHHhC--CceEEecHHHHHHHHHHHHHhh
Confidence 3455666666665 4455544 3443 4667776555566788999999997 88888877663333 32 2
Q ss_pred C-CCCCeEEEEECccceeEeEecCCcEEe
Q 020972 143 M-GKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 143 ~-g~~~~v~v~~GTGigg~gii~dG~~~r 170 (319)
. ..++++++=+|.|+--..+..++++..
T Consensus 108 l~~~~~~lviDIGGGStEl~~~~~~~~~~ 136 (285)
T PF02541_consen 108 LPPDKNGLVIDIGGGSTELILFENGKVVF 136 (285)
T ss_dssp STTTSSEEEEEEESSEEEEEEEETTEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEECCeeeE
Confidence 3 567899999999997766666777654
No 172
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=34.91 E-value=1.2e+02 Score=29.39 Aligned_cols=73 Identities=21% Similarity=0.231 Sum_probs=43.2
Q ss_pred EEEEc-CccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc-----ceE
Q 020972 25 LGLDG-GTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV-----RAV 98 (319)
Q Consensus 25 lGIDi-GGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i-----~~I 98 (319)
+|+|+ ||+.+..-+-.. +|-.+.-... ..+ .-.++.+++..+.+++=+++.|+....| ..|
T Consensus 1 lGlDl~GG~~~~~~~~~~---------~~~~~~~~~~-~~~---~~~~~~~~~~~~ii~~Rv~~~Gv~e~~i~~~G~~~I 67 (397)
T TIGR01129 1 LGLDLRGGARVLLEVDMS---------TAVVLKLSEA-EVN---AIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRI 67 (397)
T ss_pred CcccCCCCeEEEEEEcCC---------cccccccchh-ccc---cccHHHHHHHHHHHHHHHhhcCCCCcEEEEeCCceE
Confidence 58899 998887766443 3211111111 111 1124567777888887778777654444 246
Q ss_pred EEeecCCCCchh
Q 020972 99 CLAVSGVNHPTD 110 (319)
Q Consensus 99 gig~pG~~~~~~ 110 (319)
-|-+||..|++.
T Consensus 68 ~V~lPg~~d~~~ 79 (397)
T TIGR01129 68 VVELPGVTDTSR 79 (397)
T ss_pred EEECCCCCCHHH
Confidence 689999887653
No 173
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=31.66 E-value=2.3e+02 Score=26.46 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=22.4
Q ss_pred cEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecC
Q 020972 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~ 61 (319)
..++-||+|.+.|.+.++. +|+++..+..+
T Consensus 180 ~~~~lvdiG~~~t~~~i~~----------~g~~~f~R~i~ 209 (340)
T PF11104_consen 180 ETVALVDIGASSTTVIIFQ----------NGKPIFSRSIP 209 (340)
T ss_dssp -EEEEEEE-SS-EEEEEEE----------TTEEEEEEEES
T ss_pred ceEEEEEecCCeEEEEEEE----------CCEEEEEEEEe
Confidence 4689999999999999988 58887776654
No 174
>PTZ00297 pantothenate kinase; Provisional
Probab=30.75 E-value=8.9e+02 Score=27.98 Aligned_cols=19 Identities=21% Similarity=0.104 Sum_probs=16.1
Q ss_pred EEEEEEcCccceeEEEEeC
Q 020972 23 VILGLDGGTTSTVCICMPV 41 (319)
Q Consensus 23 ~~lGIDiGGTk~~~~l~d~ 41 (319)
.-++||+|||-+|.+-+..
T Consensus 1040 ~~~~~~~~~~~~~~~~~~~ 1058 (1452)
T PTZ00297 1040 VPVTIDIGGTFAKIAYVQP 1058 (1452)
T ss_pred CceEEecCceeEEEEEEeC
Confidence 4689999999999988654
No 175
>PRK09698 D-allose kinase; Provisional
Probab=30.49 E-value=17 Score=33.35 Aligned_cols=32 Identities=22% Similarity=0.149 Sum_probs=21.2
Q ss_pred eEecCCcEEeeCCCCCccC-CcCChHHHHHHHH
Q 020972 161 GFTEDGRDARAAGAGPILG-DWGSGYGIAAQAL 192 (319)
Q Consensus 161 gii~dG~~~raGg~Ghl~g-d~Gsa~~iG~~~~ 192 (319)
|-+..|....+|++||+.- ..+.-+.||+..+
T Consensus 149 G~~~~G~~g~agEiGh~~v~~~~~~C~CG~~gc 181 (302)
T PRK09698 149 GAPWTGAHGVAGELGHIPLGDMTQHCGCGNPGC 181 (302)
T ss_pred CEEeeCCCCCccccCceEeeCCCcccCCCCccc
Confidence 4445677778999999965 3455566665443
No 176
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=30.26 E-value=1e+02 Score=24.55 Aligned_cols=36 Identities=8% Similarity=0.220 Sum_probs=31.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (319)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p 103 (319)
.+.+++.+...+++++++++.++.+++|.+|-+.+.
T Consensus 13 nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T 48 (117)
T TIGR01796 13 NEAEEIGEAVAELLTELMERNELTPEDLISVIFTVT 48 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEec
Confidence 468899999999999999999999999998887664
No 177
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=30.05 E-value=1e+02 Score=24.52 Aligned_cols=36 Identities=8% Similarity=0.203 Sum_probs=31.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceEEEeec
Q 020972 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (319)
Q Consensus 68 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~Igig~p 103 (319)
.+.+++.+...+++++++++.++.+++|.+|-+.+.
T Consensus 13 nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T 48 (117)
T cd02185 13 NTAEEILEATRELLEEIIERNNIKPEDIISVIFTVT 48 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeC
Confidence 468899999999999999999999999998887663
No 178
>PRK13410 molecular chaperone DnaK; Provisional
Probab=29.79 E-value=46 Score=34.65 Aligned_cols=20 Identities=40% Similarity=0.524 Sum_probs=0.0
Q ss_pred CcEEEEEEcCccceeEEEEe
Q 020972 21 REVILGLDGGTTSTVCICMP 40 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d 40 (319)
|.+++|||+|.|++.+++++
T Consensus 1 m~~viGIDlGTt~s~va~~~ 20 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVME 20 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEE
No 179
>PRK09557 fructokinase; Reviewed
Probab=29.40 E-value=8.2 Score=35.54 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=17.8
Q ss_pred CccceeEeEecCCcEEeeCCCCCccC
Q 020972 154 GTGTIAYGFTEDGRDARAAGAGPILG 179 (319)
Q Consensus 154 GTGigg~gii~dG~~~raGg~Ghl~g 179 (319)
|.|+.--|-+..|....+|++||+..
T Consensus 135 G~giv~~G~l~~G~~g~aGEiGH~~v 160 (301)
T PRK09557 135 GAGVAINGRVHIGGNGIAGEWGHNPL 160 (301)
T ss_pred EEEEEECCEEEecCCCCCcccCceec
Confidence 34444445556788778999999865
No 180
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=28.60 E-value=14 Score=34.07 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=19.3
Q ss_pred CccceeEeEecCCcEEeeCCCCCccCC
Q 020972 154 GTGTIAYGFTEDGRDARAAGAGPILGD 180 (319)
Q Consensus 154 GTGigg~gii~dG~~~raGg~Ghl~gd 180 (319)
|.|+.--|-+..|....+|++||+.-+
T Consensus 135 G~giv~~G~l~~G~~g~aGEiGH~~v~ 161 (303)
T PRK13310 135 GGGLVFNGKPISGRSYITGEFGHMRLP 161 (303)
T ss_pred EEEEEECCEEeeCCCCccccccceeec
Confidence 445544455667887889999999754
No 181
>COG0817 RuvC Holliday junction resolvasome, endonuclease subunit [DNA replication, recombination, and repair]
Probab=28.54 E-value=1.5e+02 Score=24.98 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=36.3
Q ss_pred EEEEcCccceeEEEEeCccCCCCCCCCCCeEE---EEecCCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 020972 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLA---RAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (319)
Q Consensus 25 lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~---~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~ 89 (319)
||||=|-..+=+++++. +++-+. ...+.+... ....+-+..|.+.++++++++.
T Consensus 1 lGIDPGl~~~G~gvI~~---------~~~~l~~v~~G~I~t~~~--~~l~~RL~~l~~~l~~vl~~~~ 57 (160)
T COG0817 1 LGIDPGLRRTGYGVIEV---------EGRQLSYLASGVIRTSSD--APLAERLKQLYDGLSEVLDEYQ 57 (160)
T ss_pred CCcCCCccccceEEEEc---------cCCeEEEEeeeEEecCCC--ccHHHHHHHHHHHHHHHHHHhC
Confidence 68999999999999998 555333 222222211 3455667778888888888764
No 182
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=28.42 E-value=1.1e+02 Score=24.24 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEEC
Q 020972 75 ETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAG 154 (319)
Q Consensus 75 ~~i~~~i~~~l~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~G 154 (319)
+.|.+.+.+++++.++++..|..|+ . ++ .+...+-...+.+.++ .|+..-....+...- ....++++.=..|
T Consensus 15 ~~i~~ai~~~l~~~~~~~~~i~~ia--s--i~-~K~~E~~l~~~A~~l~--~~~~~~~~eeL~~~~-~~~~S~~v~~~~G 86 (121)
T PF01890_consen 15 EEIEEAIEQALAEAGLSPRSIAAIA--S--ID-IKADEPGLLELAEELG--IPLRFFSAEELNAVE-VPTPSEFVKKTTG 86 (121)
T ss_dssp HHHHHHHHHHHHHCT--GGGEEEEE--E--SS-SSS--HHHHHHHHHCT--SEEEEE-HHHHHCHH-CSCT-CHHHCCCS
T ss_pred HHHHHHHHHHHHHcCCChhhccEEE--e--cc-ccCCCHHHHHHHHHhC--CCeEEECHHHHhcCC-CCCCCHHHHHHcC
Confidence 4467777888888888877776643 2 22 2233344445666776 787777666654332 2333445555555
Q ss_pred ccc
Q 020972 155 TGT 157 (319)
Q Consensus 155 TGi 157 (319)
+++
T Consensus 87 v~s 89 (121)
T PF01890_consen 87 VGS 89 (121)
T ss_dssp SS-
T ss_pred Cch
Confidence 554
No 183
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=27.02 E-value=37 Score=31.40 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=27.1
Q ss_pred EcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHHHHHHHHHHHHH
Q 020972 28 DGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALL 86 (319)
Q Consensus 28 DiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~ 86 (319)
|=|.|++|+-++|. +|+++.+.+.+.- ......+.+-+.+.+++.+++.
T Consensus 1 DWGTSnlR~~l~~~---------~g~vl~~~~~~~G-i~~~~~~~f~~~l~~~~~~w~~ 49 (287)
T PF05035_consen 1 DWGTSNLRAWLMDE---------DGQVLAERSSPVG-ILNLAPDGFEAVLRELLGDWLA 49 (287)
T ss_dssp EE-SS-EEEEEE-C---------TTEEEEEEEES---CCHHCCH-HCHHHHHHCCCTT-
T ss_pred CCchhhhhhheecC---------CCcEEeeecCCcC-hhhcCcccHHHHHHHHHHHHhh
Confidence 67999999999998 9999998875321 1112223333445555555544
No 184
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=26.38 E-value=1.3e+02 Score=32.05 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=18.7
Q ss_pred cEEEEEEcCccceeEEEEeC
Q 020972 22 EVILGLDGGTTSTVCICMPV 41 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~ 41 (319)
.|+||+|+|.+++=++++|.
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~ 20 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVED 20 (805)
T ss_pred CceeEEeecccceeEEEEec
Confidence 38999999999999999997
No 185
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=26.19 E-value=2.4e+02 Score=22.34 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=35.1
Q ss_pred eecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCCCCCeEEEEECcccee
Q 020972 101 AVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIA 159 (319)
Q Consensus 101 g~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g~~~~v~v~~GTGigg 159 (319)
.+.|..+. ..+++.+++..++...+.|.||..+|.. -..|.-|..+=..-||-||
T Consensus 4 vigGql~K---~ei~~~i~~~~~~~~ev~i~sDmeAAm~-vK~G~aDYY~GACnTGgGg 58 (117)
T PF10941_consen 4 VIGGQLDK---EEIAELIEKLGPGKVEVTIKSDMEAAMA-VKSGQADYYLGACNTGGGG 58 (117)
T ss_pred EEccccCH---HHHHHHHHHHCCCcEEEEEechHHHHHH-hhcCCcCEeEeecCCCccH
Confidence 44564443 3466777777664468999999997643 2345556666566677533
No 186
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.09 E-value=68 Score=33.45 Aligned_cols=18 Identities=28% Similarity=0.121 Sum_probs=16.6
Q ss_pred EEEEEcCccceeEEEEeC
Q 020972 24 ILGLDGGTTSTVCICMPV 41 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~ 41 (319)
++++|+|||+|+++++..
T Consensus 280 ~i~~DmGGTStDva~i~~ 297 (674)
T COG0145 280 AIVFDMGGTSTDVALIID 297 (674)
T ss_pred EEEEEcCCcceeeeeeec
Confidence 999999999999998873
No 187
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=26.04 E-value=5.2e+02 Score=23.77 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=49.9
Q ss_pred cceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHHhhcCC---CCCeEEEEECccceeEeEecCCcEEe
Q 020972 95 VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTEDGRDAR 170 (319)
Q Consensus 95 i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~~g---~~~~v~v~~GTGigg~gii~dG~~~r 170 (319)
..-+-+++|-..+......+.+.++. ++. ..+.+.|..-+|+++.... ...++++-+|.|.--..++.+|.+..
T Consensus 100 ~~~vvit~P~~~~~~~r~~~~~~~e~-~g~-~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~ 176 (335)
T PRK13930 100 KPRIVICVPSGITEVERRAVREAAEH-AGA-REVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY 176 (335)
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHH-cCC-CeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe
Confidence 44567889987766555666666654 442 3588889999888864321 23468889998886666666777654
No 188
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=25.94 E-value=3.8e+02 Score=23.72 Aligned_cols=26 Identities=19% Similarity=-0.026 Sum_probs=20.5
Q ss_pred EEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEe
Q 020972 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA 59 (319)
Q Consensus 24 ~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~ 59 (319)
.+-+|+|+..+.+.++. .|+++....
T Consensus 110 ~~vvDiGggtt~i~i~~----------~G~i~~~~~ 135 (239)
T TIGR02529 110 GAVVDVGGGTTGISILK----------KGKVIYSAD 135 (239)
T ss_pred cEEEEeCCCcEEEEEEE----------CCeEEEEEe
Confidence 48999999999988876 477776554
No 189
>PF06793 UPF0262: Uncharacterised protein family (UPF0262); InterPro: IPR008321 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.39 E-value=4e+02 Score=22.25 Aligned_cols=101 Identities=14% Similarity=0.071 Sum_probs=64.2
Q ss_pred ccccccccCCCcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHH---HHHHHHHHHHHH
Q 020972 11 DFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARE---TIEKVMADALLK 87 (319)
Q Consensus 11 ~~~~~~~~~m~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~---~i~~~i~~~l~~ 87 (319)
.|.+.-..+...|.|-+-+-..++-+-+.+. ++..+.......+ +...+++ .|++..-++++.
T Consensus 40 ~F~p~g~~~~GPY~L~Lsi~d~RLvfdI~~e---------~~~~~~~~~LsL~-----PfRrvikDYf~ICeSYy~Air~ 105 (158)
T PF06793_consen 40 SFAPVGHDDAGPYRLHLSIQDNRLVFDIRDE---------DGEPLATHHLSLT-----PFRRVIKDYFMICESYYEAIRT 105 (158)
T ss_pred eeccCCCCCCCCEEEEEEEEcCEEEEEecCC---------CCCEeeEEEeccc-----cHHHHHHHHHHHHHHHHHHHhh
Confidence 3554433434568888888788887877777 7887776654322 2233333 355555555554
Q ss_pred cCCCccccceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcH
Q 020972 88 SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDA 134 (319)
Q Consensus 88 ~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa 134 (319)
+ ++.+|.+|=+|=-|+-|+. .+.|++++. -++.+|.|.
T Consensus 106 a--~p~qIEaIDMgRRGlHNEG-----a~lL~eRL~--GKi~~D~dT 143 (158)
T PF06793_consen 106 A--TPSQIEAIDMGRRGLHNEG-----AELLQERLE--GKIEVDFDT 143 (158)
T ss_pred C--CHhhhhhhhhhhhccchHH-----HHHHHHHhc--CCcccChhh
Confidence 4 5679999999888887653 345667775 367777776
No 190
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=24.92 E-value=1.2e+02 Score=28.25 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=15.5
Q ss_pred cEEEEEEcCccceeEEEEeC
Q 020972 22 EVILGLDGGTTSTVCICMPV 41 (319)
Q Consensus 22 ~~~lGIDiGGTk~~~~l~d~ 41 (319)
..++.||+||+.+.++++..
T Consensus 164 ~~~lVVDIGG~T~Dv~~v~~ 183 (318)
T PF06406_consen 164 ESVLVVDIGGRTTDVAVVRG 183 (318)
T ss_dssp SEEEEEEE-SS-EEEEEEEG
T ss_pred CcEEEEEcCCCeEEeeeecC
Confidence 46899999999999998874
No 191
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=24.38 E-value=13 Score=34.38 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=25.5
Q ss_pred CccceeEeEecCCcEEeeCCCCCccCCcCChHHHHHHHH
Q 020972 154 GTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQAL 192 (319)
Q Consensus 154 GTGigg~gii~dG~~~raGg~Ghl~gd~Gsa~~iG~~~~ 192 (319)
|.|++--|-+..|....+|++|||.-+....|.||+..+
T Consensus 145 G~giv~~g~l~~G~~g~age~Gh~~v~~~g~c~cG~~Gc 183 (314)
T COG1940 145 GGGIIVNGKLLRGANGNAGEIGHMVVDPDGECGCGRRGC 183 (314)
T ss_pred eEEEEECCEEeecCCCccccccceEECCCCccCCCCCCc
Confidence 444444445567888889999999765443356666554
No 192
>PF13993 YccJ: YccJ-like protein
Probab=24.35 E-value=62 Score=22.58 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=20.5
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHHH
Q 020972 240 LVPVVVSCAEAGDEVANKILQDSVEE 265 (319)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~ 265 (319)
+++.||+.|......|++|.++-.++
T Consensus 18 IAeAIFElA~~dE~lAekIWeeGsDe 43 (69)
T PF13993_consen 18 IAEAIFELANNDEVLAEKIWEEGSDE 43 (69)
T ss_pred HHHHHHHHhcccHHHHHHHHHccchH
Confidence 47789999987778899999876554
No 193
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=24.31 E-value=76 Score=22.30 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=15.2
Q ss_pred HHHHHHcCCHHHHHHH-HHHHHHHH
Q 020972 244 VVSCAEAGDEVANKIL-QDSVEELA 267 (319)
Q Consensus 244 v~~~A~~GD~~A~~il-~~a~~~Lg 267 (319)
++.+|.+||+.|.+-+ +..--++.
T Consensus 3 vI~~A~~GD~~A~~~IL~~y~~yI~ 27 (65)
T PF12645_consen 3 VIKAAKQGDPEAMEEILKHYEPYIS 27 (65)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 5567899999887544 43333433
No 194
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=23.98 E-value=2.6e+02 Score=25.67 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCccccceEEEeecCCCCchhHH----HHHHHHHhhCCCCceEE----------------------E
Q 020972 77 IEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQ----RILNWLRDIFPGNVRLY----------------------V 130 (319)
Q Consensus 77 i~~~i~~~l~~~~~~~~~i~~Igig~pG~~~~~~~~----~l~~~L~~~~~~~~pv~----------------------v 130 (319)
+....++++.+.++...++. +.-+=+.+++... .|...|+..+ +||. +
T Consensus 105 L~~~y~~~f~~~~~~~~q~l---lt~~d~~~~~~~~~~~~~l~~lL~~g~---iPVi~~nD~v~~~~~~~~~~~~~~~i~ 178 (284)
T cd04256 105 LMALYEAMFTQYGITVAQVL---VTKPDFYDEQTRRNLNGTLEELLRLNI---IPIINTNDAVSPPPEPDEDLQGVISIK 178 (284)
T ss_pred HHHHHHHHHHHcCCcHHHee---eeccccccHHHHHHHHHHHHHHHHCCC---EEEEeCCCccccccccccccccccccc
Confidence 45555666776676655542 3333333333322 3444444432 4555 4
Q ss_pred eCcHHHHHHhhcCCCCCeEEEE
Q 020972 131 HNDALAALASGTMGKLHGCVLI 152 (319)
Q Consensus 131 ~NDa~aa~~g~~~g~~~~v~v~ 152 (319)
+||.-++++++..+.+..++++
T Consensus 179 d~D~lAa~lA~~l~Ad~Li~lT 200 (284)
T cd04256 179 DNDSLAARLAVELKADLLILLS 200 (284)
T ss_pred ChHHHHHHHHHHcCCCEEEEEe
Confidence 6677777777666654444443
No 195
>PHA02535 P terminase ATPase subunit; Provisional
Probab=23.61 E-value=6.9e+02 Score=25.68 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=52.2
Q ss_pred CcEEEEEEcCccc--eeEEEEeCccCCCCCCCCCC---eEEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 020972 21 REVILGLDGGTTS--TVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (319)
Q Consensus 21 ~~~~lGIDiGGTk--~~~~l~d~~~~~~~~~~~G~---il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i 95 (319)
..+++|+|++.|. +.++|+.. +.. .|. ++.+..... .+.+...+. |.+++++. +|
T Consensus 402 ~~VwiG~D~sr~~D~t~lvVvap-----p~~-~g~kfrvler~~~~g-----~~f~~QA~~----I~~l~~ry-----nV 461 (581)
T PHA02535 402 REVWVGYDPAHTGDSAGLVVVAP-----PAV-PGGKFRVLERHQWRG-----LDFAEQAAE----IRKLTEKY-----NV 461 (581)
T ss_pred ceEEEeeCCCCCCCCeEEEEEec-----Ccc-cCCeEEEEEEEEEcC-----CCHHHHHHH----HHHHHHHc-----Cc
Confidence 4589999999886 44444421 000 333 333333321 355554444 44455544 45
Q ss_pred ceEEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHHHHHH
Q 020972 96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA 139 (319)
Q Consensus 96 ~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~aa~~ 139 (319)
..|||=..|+.. .+.+.+++.||...|+...+.....+.
T Consensus 462 ~~I~ID~TGiG~-----~v~e~v~~~~p~v~~i~ys~~~K~~Lv 500 (581)
T PHA02535 462 TYIGIDATGIGA-----GVYQLVKKFFPAAVAINYSPEVKTRLV 500 (581)
T ss_pred eEEEEcCCCCCH-----HHHHHHHHhcCCeeEEEeCHHHHHHHH
Confidence 667776666543 466667777763247777777775433
No 196
>PRK11678 putative chaperone; Provisional
Probab=22.92 E-value=59 Score=32.10 Aligned_cols=63 Identities=13% Similarity=-0.045 Sum_probs=36.1
Q ss_pred ccceEEEeecCCCC----chhH-H---HHHHHHHhhCCCCceEEEeCcHHHHHHhhc---CCCCCeEEEEECccce
Q 020972 94 AVRAVCLAVSGVNH----PTDQ-Q---RILNWLRDIFPGNVRLYVHNDALAALASGT---MGKLHGCVLIAGTGTI 158 (319)
Q Consensus 94 ~i~~Igig~pG~~~----~~~~-~---~l~~~L~~~~~~~~pv~v~NDa~aa~~g~~---~g~~~~v~v~~GTGig 158 (319)
.+..+.|++|-.-+ +... . .+.+..+. -+. ..+.+.|.-.+|+++-. ...+..+++=+|-|.-
T Consensus 148 ~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~-AG~-~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~ 221 (450)
T PRK11678 148 AITQAVIGRPVNFQGLGGEEANRQAEGILERAAKR-AGF-KDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTT 221 (450)
T ss_pred CCCcEEEEECCccccCCcchhHHHHHHHHHHHHHH-cCC-CEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeE
Confidence 46677899998643 1111 1 13333332 232 36889999999888521 1234566677777663
No 197
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=22.79 E-value=1.6e+02 Score=26.36 Aligned_cols=55 Identities=7% Similarity=0.193 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchhhcccccccEEEEcchhhhcHHHHHHHH
Q 020972 253 EVANKILQDSVEELALSVKAVVQRLSLSGEGVTYTKILKEKVPLLMENILFLLSWLVVFLKL 314 (319)
Q Consensus 253 ~~A~~il~~a~~~Lg~~la~li~~l~~~~~~~~~~~~~~~~~~ivl~Gg~~~~~~~~~~~~~ 314 (319)
.++..|.+++++..|.+++.+++.+.-..+ ....+..|-+-|+++ .-.+.|...+
T Consensus 152 ~I~~aV~~RAA~L~Aa~iaail~~~~~~~~------~~~~~v~VavDGSv~-~~~p~f~~~l 206 (243)
T PF03727_consen 152 RICEAVSTRAARLVAAAIAAILNKIRENKG------RPRREVTVAVDGSVY-EKYPNFRERL 206 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT------CSSEEEEEEEESHHH-HHSTTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhcccc------ccCCceEEEEeCcce-eeCHHHHHHH
Confidence 467789999999999999999998642111 112357788999998 5555554444
No 198
>PRK02853 hypothetical protein; Provisional
Probab=22.44 E-value=4.7e+02 Score=21.91 Aligned_cols=92 Identities=13% Similarity=0.026 Sum_probs=59.5
Q ss_pred CcEEEEEEcCccceeEEEEeCccCCCCCCCCCCeEEEEecCCCCccccCHHHHHH---HHHHHHHHHHHHcCCCccccce
Q 020972 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARE---TIEKVMADALLKSGSNRSAVRA 97 (319)
Q Consensus 21 ~~~~lGIDiGGTk~~~~l~d~~~~~~~~~~~G~il~~~~~~~~~~~~~~~~~~~~---~i~~~i~~~l~~~~~~~~~i~~ 97 (319)
..|.|.+-+-..++-+-+.+. +++.+.+.....+ +...+++ .|++..-++++.+ ++.+|.+
T Consensus 53 GPy~L~Lsi~~~rLvfdI~~e---------~~~~~~~~~LsL~-----PfRrvvKDYf~ICeSYy~Air~a--~p~qIEa 116 (161)
T PRK02853 53 GPYRLHLSLQENRLVFDIRRE---------DGEPVATHILSLT-----PFRRVVKDYFMICESYYQAIRTA--TPSQIEA 116 (161)
T ss_pred CCEEEEEEEecCeeEEEecCC---------CCCeeeEEEeccc-----cHHHHHHHHHHHHHHHHHHHHhC--CHhHhhh
Confidence 457777777777777777676 7777777654322 2233333 3455554555543 5679999
Q ss_pred EEEeecCCCCchhHHHHHHHHHhhCCCCceEEEeCcHH
Q 020972 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDAL 135 (319)
Q Consensus 98 Igig~pG~~~~~~~~~l~~~L~~~~~~~~pv~v~NDa~ 135 (319)
|=+|=-|+-++. .+.|++++. -++.+|.|.-
T Consensus 117 IDMgRRGiHNEg-----s~lL~eRL~--GKi~~D~dTA 147 (161)
T PRK02853 117 IDMGRRGLHNEG-----SELLQERLE--GKIEVDFDTA 147 (161)
T ss_pred hhhhccccchHH-----HHHHHHHHc--CCeeechHHH
Confidence 999988887653 345677776 3788888863
Done!