BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020973
         (319 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q93ZE2|TGA7_ARATH Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1
          Length = 368

 Score = 37.0 bits (84), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 90  KYSHWRQEQKTRAVSLEKQLNSR---WELEELIKEQLNRFNTHYNHSSIPTYLKDVASFL 146
           +YSHW QEQ  R   L   L S     EL+ L++  LN +   +   S      DV   +
Sbjct: 158 EYSHWLQEQSRRVSELRTALQSHISDIELKMLVESCLNHYANLFQMKSDAAK-ADVFYLI 216

Query: 147 MPRWTPPHELAALYWIGDWRPSAILDL 173
              W    E     WIG +RPS +L++
Sbjct: 217 SGMWRTSTE-RFFQWIGGFRPSELLNV 242


>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1
          Length = 384

 Score = 36.6 bits (83), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 88/206 (42%), Gaps = 23/206 (11%)

Query: 90  KYSHWRQEQKTRAVSLEKQLNSR---WELEELIKEQLNRFNTHYNHSSIPTYLKDVASFL 146
           +Y+HW +EQ  R   +   L +     EL+ L+   LN +   +   +      DV   +
Sbjct: 173 EYTHWLEEQNRRVSEIRTALQAHIGDIELKMLVDSCLNHYANLFRMKADAAK-ADVFFLM 231

Query: 147 MPRWTPPHELAALYWIGDWRPSAILDLARGLVRSPSSIS----SSSKSESSDAERLLSQV 202
              W    E     WIG +RPS +L++    V   +        + +  S  AE  LSQ 
Sbjct: 232 SGMWRTSTE-RFFQWIGGFRPSELLNVVMPYVEPLTDQQLLEVRNLQQSSQQAEEALSQG 290

Query: 203 MHEIRIEEAIIDEEMAEIQATCVLHLPFASLNKKRLYGSALGFIQKEFKKIERVIIKAQQ 262
           +   ++++ ++  E   IQ   V      S+N    +G+ +    +  + +E  + +A  
Sbjct: 291 LD--KLQQGLV--ESIAIQIKVV-----ESVN----HGAPMASAMENLQALESFVNQADH 337

Query: 263 LRLKALELVVKKVLSPTDAAKFFVAF 288
           LR + L+  + K+L+   AA+  +A 
Sbjct: 338 LRQQTLQ-QMSKILTTRQAARGLLAL 362


>sp|P14232|TGA1A_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana
           tabacum GN=TGA1A PE=1 SV=1
          Length = 359

 Score = 35.4 bits (80), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 99/241 (41%), Gaps = 42/241 (17%)

Query: 69  VQCTTIHKSESSKRGEDISREKYSHWRQEQKTRAVSLEKQLNSR---WELEELIKEQLNR 125
           V  + +  S ++  G  +   +Y HW +EQ  +   L   L+S+    EL  ++   LN 
Sbjct: 128 VDASQLSYSGTASSGTAVFDMEYGHWVEEQTRQTNDLRIALHSQIGEAELRIIVDGYLNH 187

Query: 126 FNTHYNHSSIPTYLKDVASFLMPRWTPPHELAALYWIGDWRPSAILD--------LARGL 177
           +   +   +      DV   +   W    E     WIG +RPS +L         L    
Sbjct: 188 YFDLFRMKATAAK-ADVLYIMSGMWKTSAE-RFFMWIGGFRPSELLKVLTPHLELLTEQQ 245

Query: 178 VRSPSSISSSSKSESSDAERLLSQVM---HEIRIEEAIIDEEMAEIQATCVLHLPFASLN 234
           +R   +++ S +     AE  LSQ M   H+I + EA+    + E   T    LP     
Sbjct: 246 LREVCNLTQSCQQ----AEDALSQGMVKLHQI-LAEAVAAGRLGEGNYT----LP----- 291

Query: 235 KKRLYGSALGFIQKEFKKIERVIIKAQQLRLKALELVVKKVLSPTDAAKFFVA----FER 290
                   +G   ++ + + R + +A  LR + L+  + ++L+   AA+  +A    FER
Sbjct: 292 -------QMGPAIEKLEDLVRFVNQADHLRQETLQ-QMSRILNTCQAAQGLLALGEYFER 343

Query: 291 I 291
           +
Sbjct: 344 L 344


>sp|Q0TQ38|DPO4_CLOP1 DNA polymerase IV OS=Clostridium perfringens (strain ATCC 13124 /
           NCTC 8237 / Type A) GN=dinB PE=3 SV=1
          Length = 359

 Score = 33.1 bits (74), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 49/83 (59%), Gaps = 14/83 (16%)

Query: 47  TQREDAGEIDNIVERVENIVERVQCTTIHKSES----SKRGEDIS-REKYSHWRQEQKTR 101
           T RED  +ID ++E +E I ERV       SES    +K+G+ ++ + K++ ++    TR
Sbjct: 251 TLREDIEDIDEMIEILERIAERV-------SESLCLLNKKGKTVTLKVKFNDFK--HITR 301

Query: 102 AVSLEKQLNSRWELEELIKEQLN 124
           +++LE  L  + E+ E +K+ ++
Sbjct: 302 SITLEHFLKEQKEIMECVKDLIS 324


>sp|O27041|VATI_METTH V-type ATP synthase subunit I OS=Methanothermobacter
           thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
           10044 / NBRC 100330 / Delta H) GN=atpI PE=3 SV=1
          Length = 658

 Score = 32.7 bits (73), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 21  LAKKKGNFLSSDLEGQEKDERRVRTGTQREDAGEIDNIVERVENIVERVQCTTIHK---- 76
           LA      + SD EG+ K ER +   T ++ A  I +++ R+E   ER + + +      
Sbjct: 193 LADITDELVISDREGENKAERILIIVTLKKHADSIASVLRRME--FERFEISELQGRPSE 250

Query: 77  --SESSKRGEDISREKYSHWRQEQKTRAVSLEKQLNSRWELEELI-KEQL 123
             S S  R E+ISRE     R+E     +S  + +N+ WE E L+ +EQL
Sbjct: 251 IISSSKTRLEEISRE-----RKE----IISKLRDINAEWEDELLVLREQL 291


>sp|B2V9F3|PROA_SULSY Gamma-glutamyl phosphate reductase OS=Sulfurihydrogenibium sp.
           (strain YO3AOP1) GN=proA PE=3 SV=1
          Length = 446

 Score = 31.6 bits (70), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 23/166 (13%)

Query: 56  DNIVERVENIVERVQ-CTTIHKSESSKRGEDISREKYSHWRQEQKTRAVSLEKQLNSRWE 114
           +NI ++ +N V ++   TT  K+++  R  ++  E+ S   +E K      EK+  S+  
Sbjct: 8   ENIAKKAKNTVRKLSSLTTKTKNDALLRTAELLLERKSQIIEENKKDLELAEKKGYSKAL 67

Query: 115 LEELIKEQLNRFNTHYNHSSIPTYLKDVASFLMP------RWTPPH---------ELAAL 159
           L+ L  +   R N       +   LKDVA+   P       WT P+          L  +
Sbjct: 68  LDRLALDD-KRIN------QMVQVLKDVAALPDPVGEIINMWTRPNGLKVGQMRVPLGVI 120

Query: 160 YWIGDWRPSAILDLARGLVRSPSSISSSSKSESSDAERLLSQVMHE 205
             I + RP+  ++ A   ++S +++     SE+ ++ R+L  ++ +
Sbjct: 121 LIIYEARPNVTIEAASLCMKSSNAVILKGGSETINSNRILVDIIKQ 166


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,772,354
Number of Sequences: 539616
Number of extensions: 4226813
Number of successful extensions: 17065
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 16981
Number of HSP's gapped (non-prelim): 179
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)