Query 020973
Match_columns 319
No_of_seqs 134 out of 218
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:54:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y39_A Nickel and cobalt resis 96.5 0.023 7.7E-07 47.5 10.5 91 188-290 18-111 (118)
2 3itf_A Periplasmic adaptor pro 95.5 0.14 4.6E-06 43.9 10.9 92 187-291 42-134 (145)
3 3o39_A Periplasmic protein rel 92.7 0.28 9.7E-06 40.0 6.8 85 188-285 15-100 (108)
4 3oeo_A Spheroplast protein Y; 91.9 0.13 4.4E-06 43.4 3.9 91 188-291 31-122 (138)
5 3lay_A Zinc resistance-associa 80.0 14 0.00049 32.2 10.3 78 189-274 66-143 (175)
6 1fm2_A Glutaryl 7-aminocephalo 44.2 92 0.0031 26.8 8.2 96 59-178 48-145 (169)
7 3v22_V Ribosome modulation fac 23.9 9.7 0.00033 28.3 -1.3 17 158-174 37-53 (61)
8 2vs0_A Virulence factor ESXA; 23.3 1.7E+02 0.0059 21.0 5.7 65 50-127 20-84 (97)
9 1t07_A Hypothetical UPF0269 pr 22.8 1.1E+02 0.0036 24.5 4.5 42 85-127 35-76 (94)
10 2jrm_A Ribosome modulation fac 22.7 11 0.00036 28.4 -1.3 17 152-170 33-49 (65)
No 1
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=96.51 E-value=0.023 Score=47.51 Aligned_cols=91 Identities=9% Similarity=0.077 Sum_probs=66.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020973 188 SKSESSDAERLLSQVMHEIRIEEAIIDEEMAEIQATCVLHLPFASLNKKRLYGSALGFIQKEFKKIERVIIKAQQLRLKA 267 (319)
Q Consensus 188 ~L~LTeqQl~~I~~Lq~st~qaEdaLsq~ma~lQqslA~d~~~~~~~~~~~g~~A~~~a~~kl~~Le~~l~qAD~LR~~T 267 (319)
.|.||++|...|+.+...-.....+|..+|...-.-|+ .... .++.+|.. +..++..... ..-.|+..|
T Consensus 18 ~L~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La-~ai~---~~~~~~p~----V~aaid~~h~---~mG~LQkeT 86 (118)
T 2y39_A 18 AVPLDANEREILELKEDAFAQRRREIETRLRAANGKLA-DAIA---KNPAWSPE----VEAATQEVER---AAGDLQRAT 86 (118)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HCCSCCHH----HHHHHHHHHH---HHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---hccccCHH----HHHHHHHHHH---HHHHHHHHH
Confidence 67899999999999999999999999999988888887 4331 11223332 3333333333 444588899
Q ss_pred ---HHHHHHhhCCHHHHHHHHHHHHH
Q 020973 268 ---LELVVKKVLSPTDAAKFFVAFER 290 (319)
Q Consensus 268 ---L~~lv~~ILTp~QAA~fLlA~~e 290 (319)
+-.|. .||||-|++.|=-.+.+
T Consensus 87 i~HvfeMR-~VLtPeQ~~~fd~~vv~ 111 (118)
T 2y39_A 87 LVHVFEMR-AGLKPEHRPAYDRVLID 111 (118)
T ss_dssp HHHHHHHH-HHSCGGGHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 67777 99999999999765544
No 2
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=95.47 E-value=0.14 Score=43.89 Aligned_cols=92 Identities=13% Similarity=0.182 Sum_probs=62.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccccccccccchhhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 020973 187 SSKSESSDAERLLSQVMHEIRIEEAIID-EEMAEIQATCVLHLPFASLNKKRLYGSALGFIQKEFKKIERVIIKAQQLRL 265 (319)
Q Consensus 187 ~~L~LTeqQl~~I~~Lq~st~qaEdaLs-q~ma~lQqslA~d~~~~~~~~~~~g~~A~~~a~~kl~~Le~~l~qAD~LR~ 265 (319)
..|.||++|...|..|....+.+...++ ..+..++.-+..+ ++-. +.+.+.++.+...-.+.--.|.
T Consensus 42 ~~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ad---------~fDe---aa~ral~~~~~~~~~e~~v~r~ 109 (145)
T 3itf_A 42 DGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAE---------NFDE---NAVRAQAEKMANEQIARQVEMA 109 (145)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCS---------SCCH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHccC---------CCCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677999999999999988887655442 2334444333211 1111 2355566666666666677889
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHH
Q 020973 266 KALELVVKKVLSPTDAAKFFVAFERI 291 (319)
Q Consensus 266 ~TL~~lv~~ILTp~QAA~fLlA~~e~ 291 (319)
++-.+|. .||||-|-+.|---..+-
T Consensus 110 k~~~qiy-~vLTPEQk~ql~e~~~~r 134 (145)
T 3itf_A 110 KVRNQMY-RLLTPEQQAVLNEKHQQR 134 (145)
T ss_dssp HHHHHHH-TTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hhCCHHHHHHHHHHHHHH
Confidence 9999999 999999999987654443
No 3
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=92.70 E-value=0.28 Score=39.97 Aligned_cols=85 Identities=11% Similarity=0.127 Sum_probs=52.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccccccccccchhhhhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 020973 188 SKSESSDAERLLSQVMHEIRIEEAIID-EEMAEIQATCVLHLPFASLNKKRLYGSALGFIQKEFKKIERVIIKAQQLRLK 266 (319)
Q Consensus 188 ~L~LTeqQl~~I~~Lq~st~qaEdaLs-q~ma~lQqslA~d~~~~~~~~~~~g~~A~~~a~~kl~~Le~~l~qAD~LR~~ 266 (319)
.|.||++|...|-.|....+..-+..+ .....++.-+. .. .+ -.. .|.+-++.+...-.+.--.|.+
T Consensus 15 ~L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~Li~-ad---~F-----DEa---aar~l~~~~~~~~~e~~v~~~r 82 (108)
T 3o39_A 15 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIA-SD---TF-----DKA---KAEAQIAKMEEQRKANMLAHME 82 (108)
T ss_dssp CSCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHHHS-SS---SC-----CHH---HHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhc-cC---CC-----CHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 466999999999999887765532221 22344443333 11 11 111 2444444444444444456778
Q ss_pred HHHHHHHhhCCHHHHHHHH
Q 020973 267 ALELVVKKVLSPTDAAKFF 285 (319)
Q Consensus 267 TL~~lv~~ILTp~QAA~fL 285 (319)
+-++|. .||||-|-+.|-
T Consensus 83 ~~~qmy-~lLTPEQk~q~~ 100 (108)
T 3o39_A 83 TQNKIY-NILTPEQKKQFN 100 (108)
T ss_dssp HHHHHH-TTSCHHHHHHHH
T ss_pred HHHHHH-HhCCHHHHHHHH
Confidence 899999 999999998874
No 4
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=91.89 E-value=0.13 Score=43.36 Aligned_cols=91 Identities=12% Similarity=0.124 Sum_probs=57.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccccccchhhhhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 020973 188 SKSESSDAERLLSQVMHEIRIEEA-IIDEEMAEIQATCVLHLPFASLNKKRLYGSALGFIQKEFKKIERVIIKAQQLRLK 266 (319)
Q Consensus 188 ~L~LTeqQl~~I~~Lq~st~qaEd-aLsq~ma~lQqslA~d~~~~~~~~~~~g~~A~~~a~~kl~~Le~~l~qAD~LR~~ 266 (319)
.|.||++|...|..|....+..-. .+-...+.++.-+..+. + - .+.+.+.++.+...-.+.--.|.+
T Consensus 31 ~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li~a~~----f-----D---eaav~al~~~~~~~~~e~~~~~~~ 98 (138)
T 3oeo_A 31 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIITSDT----F-----D---KVKAEAQIAKMEEQRKANMLAHME 98 (138)
T ss_dssp CSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHHHTCSS----C-----C---HHHHHHHHGGGSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----C-----C---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999887765422 11122234443333111 1 1 113445555555556666667889
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHH
Q 020973 267 ALELVVKKVLSPTDAAKFFVAFERI 291 (319)
Q Consensus 267 TL~~lv~~ILTp~QAA~fLlA~~e~ 291 (319)
+..+|. .||||-|-+.|---+.+-
T Consensus 99 ~~~~~~-~vLTPEQr~q~~~~~~kr 122 (138)
T 3oeo_A 99 TQNKIY-NILTPEQKKQFNANFEKR 122 (138)
T ss_dssp HHHHHH-TTSCHHHHHHHHHHTC--
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHH
Confidence 999999 999999999987665553
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=80.00 E-value=14 Score=32.21 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020973 189 KSESSDAERLLSQVMHEIRIEEAIIDEEMAEIQATCVLHLPFASLNKKRLYGSALGFIQKEFKKIERVIIKAQQLRLKAL 268 (319)
Q Consensus 189 L~LTeqQl~~I~~Lq~st~qaEdaLsq~ma~lQqslA~d~~~~~~~~~~~g~~A~~~a~~kl~~Le~~l~qAD~LR~~TL 268 (319)
+.||++|...+..|+++.+..-.+|.+.|...++.+. .+..++-. -. +.+.+..+.+..+=.+-...|.+.-
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~-aL~~a~~~----De---akI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYN-ALLTASSP----DT---AKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTSSSC----CH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCC----CH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6699999999999999999999999888887777776 44322111 11 1233444444444455556777777
Q ss_pred HHHHHh
Q 020973 269 ELVVKK 274 (319)
Q Consensus 269 ~~lv~~ 274 (319)
.+|.|+
T Consensus 138 ~em~Ke 143 (175)
T 3lay_A 138 VAMAQA 143 (175)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777643
No 6
>1fm2_A Glutaryl 7-aminocephalosporanic acid acylase; cephalosporin acylase, antibiotics, penicillin acylase, N- terminal hydrolase; 2.00A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB: 1ghd_A 3jtq_A 3jtr_A 2adv_A 2ae3_A 2ae5_A 2ae4_A 1or0_A 1jw0_A 1jvz_A 1gk1_A 1gk0_A
Probab=44.22 E-value=92 Score=26.80 Aligned_cols=96 Identities=8% Similarity=-0.042 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhhccccCCccccchhhhHHHHHHHHHHHhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHhccCcccc
Q 020973 59 VERVENIVERVQCTTIHKSESSKRGEDISREKYSHWRQEQKTRAVSLEKQLNSRWELEELIKEQLNRFNTHYNHSSIPTY 138 (319)
Q Consensus 59 ~~~~~~~~~~~q~~~~~~~~~~~~ge~ls~~~Y~~W~eeq~r~l~eLr~Al~sd~eL~~LV~~~l~Hy~e~y~~~Ks~aA 138 (319)
-.|+-|||-..-.++-..++.+++. .+..|+|-+++.-...--..+ .++ +.+.+.+++....-++.+... .
T Consensus 48 qDRl~qm~~~Rr~a~G~lae~~G~~-~l~~D~~~R~l~~~~~a~~~~-~~l--~~~~r~~l~aYa~GVNayl~~-~---- 118 (169)
T 1fm2_A 48 RSHGDNILRLYGEARGKGAEYWGPD-YEQTTVWLLTNGVPERAQQWY-AQQ--SPDFRANLDAFAAGINAYAQQ-N---- 118 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHCGG-GHHHHHHHHHTTHHHHHHHHH-HTS--CHHHHHHHHHHHHHHHHHHHH-C----
T ss_pred HHHHHHHHHHHHHHhhhhHHHhCHh-HhHHHHHHHHcCcHHHHHHHH-HhC--CHHHHHHHHHHHHHHHHHHHh-C----
Confidence 3688899877766666566677766 677888888865543222222 222 567778888888888864432 1
Q ss_pred ccccccccCCCCCChhhhhhhhh--hcCCchhHHHHHHhhhc
Q 020973 139 LKDVASFLMPRWTPPHELAALYW--IGDWRPSAILDLARGLV 178 (319)
Q Consensus 139 ~~DVf~llsp~W~tplEra~FLW--iGGfRPS~llkLL~sl~ 178 (319)
|.|- ...| +..|.|..++.+++.++
T Consensus 119 --------------~~e~-~~e~~~~~pwtp~D~l~~~~~~~ 145 (169)
T 1fm2_A 119 --------------PDDI-SPEVRQVLPVSGADVVAHAHRLM 145 (169)
T ss_dssp --------------GGGS-CGGGGGGCSCCHHHHHHHHHHHH
T ss_pred --------------cccc-CccccCCCCCCHHHHHHHHHHHH
Confidence 1122 2333 67899988887666543
No 7
>3v22_V Ribosome modulation factor; stress response, small subunit H movement, stationary phase, ribosome hibernation; 3.00A {Escherichia coli} PDB: 3v24_V
Probab=23.87 E-value=9.7 Score=28.25 Aligned_cols=17 Identities=24% Similarity=0.685 Sum_probs=12.1
Q ss_pred hhhhhcCCchhHHHHHH
Q 020973 158 ALYWIGDWRPSAILDLA 174 (319)
Q Consensus 158 ~FLWiGGfRPS~llkLL 174 (319)
.-.|+||||--.--+++
T Consensus 37 r~~Wl~GWReg~~d~~~ 53 (61)
T 3v22_V 37 RSQWLGGWREAMADRVV 53 (61)
T ss_dssp HHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhhhhhH
Confidence 47899999976544443
No 8
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=23.31 E-value=1.7e+02 Score=21.05 Aligned_cols=65 Identities=8% Similarity=0.221 Sum_probs=33.6
Q ss_pred ccccchhHHHHHHHHHHHHHhhhccccCCccccchhhhHHHHHHHHHHHhhhHHHHHHhcccchHHHHHHHHHHHHHH
Q 020973 50 EDAGEIDNIVERVENIVERVQCTTIHKSESSKRGEDISREKYSHWRQEQKTRAVSLEKQLNSRWELEELIKEQLNRFN 127 (319)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~ge~ls~~~Y~~W~eeq~r~l~eLr~Al~sd~eL~~LV~~~l~Hy~ 127 (319)
.-+++|++++.+|.+.-+.++- ..+|... .-|...|..| +..+..+..+|. ++...+...-..|.
T Consensus 20 ~~~~~l~~~l~~L~~~~~~L~~--~W~G~a~----~af~~~~~~~----~~~~~~~~~~L~---~i~~~L~~~a~~y~ 84 (97)
T 2vs0_A 20 QGSDQIRQILSDLTRAQGEIAA--NWEGQAF----SRFEEQFQQL----SPKVEKFAQLLE---EIKQQLNSTADAVQ 84 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HSCSSTT----HHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--ccCcHHH----HHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3456777777777777777662 2344333 3344444455 444555555542 23334444444444
No 9
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=22.77 E-value=1.1e+02 Score=24.48 Aligned_cols=42 Identities=14% Similarity=0.400 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHhcccchHHHHHHHHHHHHHH
Q 020973 85 DISREKYSHWRQEQKTRAVSLEKQLNSRWELEELIKEQLNRFN 127 (319)
Q Consensus 85 ~ls~~~Y~~W~eeq~r~l~eLr~Al~sd~eL~~LV~~~l~Hy~ 127 (319)
++|.+....|+..|.-.|+|-|=-+ .|++-|.++..-|..|.
T Consensus 35 ~VSkeAW~~W~~~QTMLINE~rLnm-~d~~aRk~L~~qMekFf 76 (94)
T 1t07_A 35 NVSRKAWDEWQKHQTMLINERRLNM-MNAEDRKFLQQEMDKFL 76 (94)
T ss_dssp HCBHHHHHHHHHHHHHHHHHHTCCT-TSHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHhhHhHhhhccCCC-CCHHHHHHHHHHHHHHh
Confidence 7889999999999999999965433 37788888888888776
No 10
>2jrm_A Ribosome modulation factor; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Vibrio parahaemolyticus}
Probab=22.72 E-value=11 Score=28.38 Aligned_cols=17 Identities=29% Similarity=0.794 Sum_probs=11.5
Q ss_pred ChhhhhhhhhhcCCchhHH
Q 020973 152 PPHELAALYWIGDWRPSAI 170 (319)
Q Consensus 152 tplEra~FLWiGGfRPS~l 170 (319)
++--| =.|+||||--.-
T Consensus 33 ~~~~r--~~Wl~GWRegre 49 (65)
T 2jrm_A 33 QVDAR--SYWLGGWRDARD 49 (65)
T ss_dssp SHHHH--HHHHHHHHHHHH
T ss_pred CcHHH--HHHHHHHHHHHH
Confidence 44444 489999996543
Done!