Query 020973
Match_columns 319
No_of_seqs 134 out of 218
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 10:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020973.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020973hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xs8a_ d.279.1.1 (A:) Hypothe 30.5 27 0.0019 25.8 4.2 43 84-127 32-74 (91)
2 d1t07a_ d.279.1.1 (A:) Hypothe 25.0 44 0.0032 24.1 4.5 43 84-127 34-76 (81)
3 d1olma1 a.5.3.1 (A:1-75) Super 24.5 25 0.0019 24.0 3.0 20 187-206 3-23 (75)
4 d1uuja_ a.221.1.1 (A:) Lissenc 19.6 39 0.0028 24.1 3.1 19 275-293 1-19 (76)
5 d2p90a1 c.56.8.1 (A:6-274) Hyp 16.5 66 0.0048 26.6 4.5 29 105-133 240-268 (269)
6 d1b33n_ d.30.1.1 (N:) Allophyc 16.1 33 0.0024 23.8 1.9 14 90-103 32-45 (67)
7 d1r7ha_ c.47.1.1 (A:) Glutared 14.0 27 0.002 23.2 1.0 14 161-174 60-73 (74)
8 d1cyxa_ b.6.1.2 (A:) Quinol ox 13.9 34 0.0025 27.1 1.8 30 71-100 87-116 (158)
9 d1a0pa2 d.163.1.1 (A:111-292) 13.3 18 0.0013 27.0 -0.3 21 158-178 30-50 (182)
10 d1h75a_ c.47.1.1 (A:) Glutared 13.0 22 0.0016 23.9 0.3 12 161-172 60-71 (76)
No 1
>d1xs8a_ d.279.1.1 (A:) Hypothetical protein YggX {Salmonella typhimurium [TaxId: 90371]}
Probab=30.53 E-value=27 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.400 Sum_probs=35.8
Q ss_pred hhhhHHHHHHHHHHHhhhHHHHHHhcccchHHHHHHHHHHHHHH
Q 020973 84 EDISREKYSHWRQEQKTRAVSLEKQLNSRWELEELIKEQLNRFN 127 (319)
Q Consensus 84 e~ls~~~Y~~W~eeq~r~l~eLr~Al~sd~eL~~LV~~~l~Hy~ 127 (319)
+++|.+....|++.|.-.|+|.|=-+ .|.+-|..++..|..|.
T Consensus 32 ~~vSk~AW~~Wl~~QtmLINE~rL~l-~d~~~R~~L~~qm~~Fl 74 (91)
T d1xs8a_ 32 NEISKDAWAQWQHKQTMLINEKKLNM-MNAEHRKLLEQEMVSFL 74 (91)
T ss_dssp TTCBHHHHHHHHHHHHHHHHHHCCCT-TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHhhcccccCCC-CCHHHHHHHHHHHHHHh
Confidence 46789999999999999999987554 36777888888888886
No 2
>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.98 E-value=44 Score=24.10 Aligned_cols=43 Identities=14% Similarity=0.398 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHhhhHHHHHHhcccchHHHHHHHHHHHHHH
Q 020973 84 EDISREKYSHWRQEQKTRAVSLEKQLNSRWELEELIKEQLNRFN 127 (319)
Q Consensus 84 e~ls~~~Y~~W~eeq~r~l~eLr~Al~sd~eL~~LV~~~l~Hy~ 127 (319)
+.+|.+....|++.|...|+|.|=-+ .|++-|..++.-|..|.
T Consensus 34 ~~vSk~AW~~Wl~~QtmLINE~rL~l-~~~~~R~~L~~qM~~Fl 76 (81)
T d1t07a_ 34 NNVSRKAWDEWQKHQTMLINERRLNM-MNAEDRKFLQQEMDKFL 76 (81)
T ss_dssp HHCBHHHHHHHHHHHHHHHHHHTCCT-TSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHhhcccccCCC-CCHHHHHHHHHHHHHHh
Confidence 46788999999999999999987554 36666777777766653
No 3
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.54 E-value=25 Score=23.98 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=17.1
Q ss_pred CCCC-CcHHHHHHHHHHHHHH
Q 020973 187 SSKS-ESSDAERLLSQVMHEI 206 (319)
Q Consensus 187 ~~L~-LTeqQl~~I~~Lq~st 206 (319)
|.++ ||+.|...|.+|+..+
T Consensus 3 g~~gelt~~q~~~l~elr~~l 23 (75)
T d1olma1 3 GRVGDLSPRQKEALAKFRENV 23 (75)
T ss_dssp SBTTBCCHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 5889 9999999999998654
No 4
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.58 E-value=39 Score=24.09 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=17.0
Q ss_pred hCCHHHHHHHHHHHHHHHH
Q 020973 275 VLSPTDAAKFFVAFERIQN 293 (319)
Q Consensus 275 ILTp~QAA~fLlA~~e~~~ 293 (319)
|||++|+.+-=-|+.+|..
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999885
No 5
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=16.52 E-value=66 Score=26.64 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=23.0
Q ss_pred HHHhcccchHHHHHHHHHHHHHHHHHhcc
Q 020973 105 LEKQLNSRWELEELIKEQLNRFNTHYNHS 133 (319)
Q Consensus 105 Lr~Al~sd~eL~~LV~~~l~Hy~e~y~~~ 133 (319)
|+..+..+.++..+|++.-.+|++.|+++
T Consensus 240 i~~l~e~~~e~~~~v~~LE~~yD~~~~~~ 268 (269)
T d2p90a1 240 LMEQTEESSEIQRVVGALEQQYDSELERY 268 (269)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCHHHHHHHHHHHHhHhhhhhcc
Confidence 44444447899999999999999988875
No 6
>d1b33n_ d.30.1.1 (N:) Allophycocyanin linker chain (domain) {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.08 E-value=33 Score=23.76 Aligned_cols=14 Identities=29% Similarity=0.582 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhHH
Q 020973 90 KYSHWRQEQKTRAV 103 (319)
Q Consensus 90 ~Y~~W~eeq~r~l~ 103 (319)
-|..|+.||.+.+.
T Consensus 32 py~nWf~EQQrI~K 45 (67)
T d1b33n_ 32 PYENWFREQQRIQK 45 (67)
T ss_dssp EHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 48999999998654
No 7
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=13.95 E-value=27 Score=23.17 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=10.6
Q ss_pred hhcCCchhHHHHHH
Q 020973 161 WIGDWRPSAILDLA 174 (319)
Q Consensus 161 WiGGfRPS~llkLL 174 (319)
+||||+|-.+=+|+
T Consensus 60 ~igGf~~d~l~~L~ 73 (74)
T d1r7ha_ 60 HWSGFRPERIKQLQ 73 (74)
T ss_dssp EEESCCHHHHHHHH
T ss_pred EEeCCCHhHHHHhh
Confidence 58999998776554
No 8
>d1cyxa_ b.6.1.2 (A:) Quinol oxidase (CyoA) {Escherichia coli [TaxId: 562]}
Probab=13.91 E-value=34 Score=27.14 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=19.8
Q ss_pred hhccccCCccccchhhhHHHHHHHHHHHhh
Q 020973 71 CTTIHKSESSKRGEDISREKYSHWRQEQKT 100 (319)
Q Consensus 71 ~~~~~~~~~~~~ge~ls~~~Y~~W~eeq~r 100 (319)
|+..|....++--...+.++|..|+++++.
T Consensus 87 CG~gH~~M~~~v~vv~~~~~f~~W~~~~~~ 116 (158)
T d1cyxa_ 87 CGPGHSGMKFKAIATPDRAAFDQWVAKAKQ 116 (158)
T ss_dssp CSTTSTTCCEEEEEESSHHHHHHHHHHHHT
T ss_pred cCcccccCceEEEEECCHHHHHHHHHHhHh
Confidence 555577775543222357799999988774
No 9
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=13.26 E-value=18 Score=27.01 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=17.0
Q ss_pred hhhhhcCCchhHHHHHHhhhc
Q 020973 158 ALYWIGDWRPSAILDLARGLV 178 (319)
Q Consensus 158 ~FLWiGGfRPS~llkLL~sl~ 178 (319)
.|+|..|+||+++..|-..-+
T Consensus 30 ~l~~~tG~R~~ei~~L~~~~i 50 (182)
T d1a0pa2 30 EVLYATGLRVSELVGLTMSDI 50 (182)
T ss_dssp HHHHHHCCCHHHHTTCBGGGE
T ss_pred HHHHHhCCccCCcccchhhhh
Confidence 367889999999998876644
No 10
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=12.99 E-value=22 Score=23.90 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=9.0
Q ss_pred hhcCCchhHHHH
Q 020973 161 WIGDWRPSAILD 172 (319)
Q Consensus 161 WiGGfRPS~llk 172 (319)
|||||||-.+=+
T Consensus 60 ~i~Gf~~d~i~~ 71 (76)
T d1h75a_ 60 SWSGFRPDMINR 71 (76)
T ss_dssp EEESCCHHHHGG
T ss_pred EEECCCHHHHHH
Confidence 579999986533
Done!