Your job contains 1 sequence.
>020974
MEKKVMDLCEAAKRAAVAAVWKEGVVEEARCIDALDQIKNSSITYQLLVSTQVIRHLLPM
LKHPSQKIQKLAYDLISSWRDMCWDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSG
NVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESA
MYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQL
WNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISYQHSSILDDYNLTRHVTC
LNCNQYWVSTNLSFGVLPI
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 020974
(319 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 375 1.3e-34 1
TAIR|locus:2124097 - symbol:AT4G18720 species:3702 "Arabi... 221 1.4e-22 2
TAIR|locus:2052351 - symbol:AT2G42730 species:3702 "Arabi... 252 1.5e-22 2
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 236 7.2e-20 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 225 1.1e-18 1
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 224 1.4e-18 1
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 223 1.7e-18 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 223 1.7e-18 1
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 221 2.8e-18 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 218 1.1e-17 1
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 216 3.7e-17 1
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 209 5.3e-17 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 212 3.3e-16 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 201 4.0e-16 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 204 4.1e-15 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 198 2.8e-14 1
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 197 3.9e-14 1
TAIR|locus:504954948 - symbol:AT5G42325 species:3702 "Ara... 166 1.1e-13 2
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 185 1.5e-12 1
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 184 2.0e-12 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 184 2.0e-12 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 184 2.2e-12 1
UNIPROTKB|F1NBF9 - symbol:TCEA2 "Uncharacterized protein"... 184 2.6e-12 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 180 3.5e-12 1
UNIPROTKB|Q5JRI7 - symbol:TCEA2 "Transcription elongation... 174 5.9e-12 1
POMBASE|SPAC20H4.03c - symbol:tfs1 "transcription elongat... 179 7.9e-12 1
WB|WBGene00012000 - symbol:T24H10.1 species:6239 "Caenorh... 179 1.0e-11 1
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 161 1.5e-11 2
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 160 2.0e-11 2
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 157 6.1e-11 2
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 157 7.8e-11 2
CGD|CAL0002729 - symbol:orf19.4537 species:5476 "Candida ... 170 1.2e-10 1
FB|FBgn0030663 - symbol:CG8117 species:7227 "Drosophila m... 151 2.3e-10 1
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 150 4.4e-10 2
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 150 4.4e-10 2
UNIPROTKB|I3LFG3 - symbol:SPOCD1 "Uncharacterized protein... 156 6.3e-10 1
ASPGD|ASPL0000075205 - symbol:AN4861 species:162425 "Emer... 144 5.0e-09 2
SGD|S000003011 - symbol:DST1 "General transcription elong... 155 8.0e-09 1
UNIPROTKB|E7ER40 - symbol:PHF3 "PHD finger protein 3" spe... 162 8.6e-09 1
UNIPROTKB|E7EVH3 - symbol:PHF3 "PHD finger protein 3" spe... 162 1.1e-08 1
GENEDB_PFALCIPARUM|PF07_0057 - symbol:PF07_0057 "transcri... 130 1.4e-08 2
UNIPROTKB|Q8IBV2 - symbol:PF07_0057 "Transcription elonga... 130 1.4e-08 2
UNIPROTKB|Q92576 - symbol:PHF3 "PHD finger protein 3" spe... 162 2.4e-08 1
UNIPROTKB|E2R727 - symbol:PHF3 "Uncharacterized protein" ... 161 3.2e-08 1
UNIPROTKB|H0YF46 - symbol:SPOCD1 "SPOC domain-containing ... 147 3.5e-08 1
UNIPROTKB|G5E5M1 - symbol:PHF3 "Uncharacterized protein" ... 159 5.3e-08 1
RGD|1304925 - symbol:Phf3 "PHD finger protein 3" species:... 156 1.1e-07 1
UNIPROTKB|E2R336 - symbol:SPOCD1 "Uncharacterized protein... 151 1.2e-07 1
ZFIN|ZDB-GENE-090313-207 - symbol:phf3 "PHD finger protei... 155 1.2e-07 1
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 146 1.2e-07 1
UNIPROTKB|Q6ZMY3 - symbol:SPOCD1 "SPOC domain-containing ... 153 1.4e-07 1
UNIPROTKB|E1BVY1 - symbol:PHF3 "Uncharacterized protein" ... 155 1.5e-07 1
UNIPROTKB|E9PPM7 - symbol:SPOCD1 "SPOC domain-containing ... 147 2.8e-07 1
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 140 4.7e-07 1
UNIPROTKB|F1SV96 - symbol:SPOCD1 "Uncharacterized protein... 147 6.2e-07 1
UNIPROTKB|F1MG39 - symbol:F1MG39 "Uncharacterized protein... 145 1.0e-06 1
DICTYBASE|DDB_G0278241 - symbol:tcea1 "RNA polymerase II ... 104 1.6e-06 2
UNIPROTKB|I3L6H4 - symbol:I3L6H4 "Uncharacterized protein... 115 2.2e-06 1
UNIPROTKB|E1BCR2 - symbol:DIDO1 "Uncharacterized protein"... 144 2.8e-06 1
UNIPROTKB|F1NFF0 - symbol:Gga.41084 "Uncharacterized prot... 144 2.8e-06 1
UNIPROTKB|F1NGH5 - symbol:Gga.41084 "Uncharacterized prot... 144 2.9e-06 1
ZFIN|ZDB-GENE-030131-6117 - symbol:dido1 "death inducer-o... 143 4.6e-06 1
TAIR|locus:2179419 - symbol:AT5G25520 species:3702 "Arabi... 137 6.7e-06 1
TAIR|locus:2050311 - symbol:AT2G25640 species:3702 "Arabi... 131 2.2e-05 1
TAIR|locus:2144211 - symbol:AT5G11430 species:3702 "Arabi... 117 3.0e-05 2
MGI|MGI:1344352 - symbol:Dido1 "death inducer-obliterator... 133 4.7e-05 1
UNIPROTKB|F1PLS2 - symbol:DIDO1 "Uncharacterized protein"... 130 6.6e-05 1
RGD|1560989 - symbol:Spocd1 "SPOC domain containing 1" sp... 124 0.00013 1
UNIPROTKB|F1LWI4 - symbol:F1LWI4 "Uncharacterized protein... 112 0.00018 1
UNIPROTKB|E1BRR3 - symbol:TCEANC "Uncharacterized protein... 87 0.00020 2
UNIPROTKB|Q9BTC0 - symbol:DIDO1 "Death-inducer obliterato... 127 0.00022 1
UNIPROTKB|F1SRI2 - symbol:TCEANC "Uncharacterized protein... 82 0.00033 2
FB|FBgn0082831 - symbol:pps "protein partner of snf" spec... 122 0.00069 1
UNIPROTKB|F1M109 - symbol:F1M109 "Uncharacterized protein... 112 0.00084 1
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 88/227 (38%), Positives = 134/227 (59%)
Query: 86 VEDVEYVAVTK---KAKLVENVKVEEVTNGEERRH-DSGNVPKKSISCMIKCNDSFREIV 141
V D++ TK + + V++ KV + + + N P K ++ M+KCND R+ +
Sbjct: 156 VPDIKVTNGTKIDYRGQAVKDEKVSKDNQSSMKAPAKAANAPPK-LTAMLKCNDPVRDKI 214
Query: 142 REKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLF 201
RE L +AL +V+ EA D + V A DP++VA+ VES M+EK RS G K KYR ++F
Sbjct: 215 RELLVEALCRVAGEA-DDYERESVNASDPLRVAVSVESLMFEKLGRSTGAQKLKYRSIMF 273
Query: 202 NISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGL 261
N+ D N D RR+VL G + PE +I +SA++MASDK + N+ + K+ AL GL
Sbjct: 274 NLRDSNNPDLRRRVLTGEISPEKLITLSAEDMASDKRKQENNQI-KEKALFDCER---GL 329
Query: 262 SRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+ K +D ++CGRCG K +Y Q + D +T +VTC+NC+ +W
Sbjct: 330 AAKAS-TDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHW 375
Score = 137 (53.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 41/129 (31%), Positives = 61/129 (47%)
Query: 1 MEKKVMDLCEXXXXXXXXXXWKEGVV----EEARCIDALDQIKNSSITYQLLVSTQVIRH 56
ME ++DL E +GV E ++CIDAL Q+K +TY LV+TQV +
Sbjct: 1 MESDLIDLFEGAKKAADAAAL-DGVTSSGPEVSQCIDALKQLKKFPVTYDTLVATQVGKK 59
Query: 57 LLPMLKHPSQKIQKLAYDLISSWRDMCWDVEDVEYVAVTKKAKLVENVKVEEVTNGEERR 116
L + KHP + I+ +A DL+ W+ + +E A KK + K +V N +
Sbjct: 60 LRSLAKHPVEDIKSVATDLLEIWKKVV-----IEETAKAKKTEGTNGCKEAKV-NKMDVE 113
Query: 117 HDSGNVPKK 125
S P K
Sbjct: 114 KPSNPAPVK 122
>TAIR|locus:2124097 [details] [associations]
symbol:AT4G18720 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF07500 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00509 SMART:SM00510 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 EMBL:AL161549 GO:GO:0008270
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 EMBL:AL035526
UniGene:At.22875 HOGENOM:HOG000195015 KO:K03145 IPI:IPI00529744
PIR:T04864 RefSeq:NP_193607.1 ProteinModelPortal:Q9SN41 SMR:Q9SN41
EnsemblPlants:AT4G18720.1 GeneID:827606 KEGG:ath:AT4G18720
TAIR:At4g18720 eggNOG:KOG1105 InParanoid:Q9SN41 PhylomeDB:Q9SN41
ProtClustDB:CLSN2685449 ArrayExpress:Q9SN41 Genevestigator:Q9SN41
Uniprot:Q9SN41
Length = 266
Score = 221 (82.9 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 53/127 (41%), Positives = 71/127 (55%)
Query: 111 NGEERRHDSGNVPKK--SISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKAC 168
+G E+ D+ K + + M K DS R+ VRE L +L+KV+ E D V AC
Sbjct: 89 SGREKSRDNREAAVKIPTHATMKKTGDSKRDKVREILQTSLAKVASEVVDTEMKTRVTAC 148
Query: 169 DPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINM 228
DP VA+ VE+AM+E G K KYR +LFN+ D N D RRKVLLG + E ++ M
Sbjct: 149 DPWVVAVSVETAMFENLGCFMGPQKAKYRSILFNMGDSNNPDLRRKVLLGEISGERLVKM 208
Query: 229 SAKEMAS 235
+EM S
Sbjct: 209 EKEEMGS 215
Score = 55 (24.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 19/82 (23%), Positives = 37/82 (45%)
Query: 1 MEKK-VMDLCEXXXXXXXXXXWKEGVVEEARCIDALDQIKNS--SITYQLLVSTQVIRHL 57
M+K+ M+L E E E +R +DA++++K + S+ ++ T + + L
Sbjct: 1 MQKREFMELFEAALRAAKSVKGDENSPEVSRFVDAMNRLKEAPKSLVCDVVCKTSMGQGL 60
Query: 58 LPMLKHPSQKIQKLAYDLISSW 79
+ H + KI+ L W
Sbjct: 61 EFFIDHKNPKIRSEGRILRDLW 82
>TAIR|locus:2052351 [details] [associations]
symbol:AT2G42730 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001810 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF00646 Pfam:PF07500
PROSITE:PS50181 PROSITE:PS51319 PROSITE:PS51321 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 SUPFAM:SSF81383 InterPro:IPR006566
SMART:SM00579 Gene3D:1.10.472.30 SUPFAM:SSF46942 InterPro:IPR027191
PANTHER:PTHR32555 InterPro:IPR013101 Pfam:PF07723 IPI:IPI00519130
RefSeq:NP_181801.1 UniGene:At.36975 ProteinModelPortal:F4IP72
SMR:F4IP72 PRIDE:F4IP72 EnsemblPlants:AT2G42730.1 GeneID:818873
KEGG:ath:AT2G42730 Uniprot:F4IP72
Length = 737
Score = 252 (93.8 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 59/130 (45%), Positives = 76/130 (58%)
Query: 111 NGEERRHDSGNVPK-KSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACD 169
+G E+ HD K + S M K DS R+ VRE L +L KV+ E D V ACD
Sbjct: 579 SGREKSHDRETQVKIPTHSTMKKTGDSKRDKVREILQTSLVKVASEIVDTEMKTRVTACD 638
Query: 170 PIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMS 229
P VA+ VESAM+EK G +K KYR +LFN+ D N D RRKVL+G + E ++ M
Sbjct: 639 PSVVAVSVESAMFEKLGCFMGPHKAKYRSILFNMGDSNNPDLRRKVLIGEINGERLVTME 698
Query: 230 AKEMASDKIQ 239
+EM S+KIQ
Sbjct: 699 RQEMGSEKIQ 708
Score = 44 (20.5 bits), Expect = 1.5e-22, Sum P(2) = 1.5e-22
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 22 KEGVVEEARCIDALDQIKNSSI 43
+E VVEE RC+D + + S+
Sbjct: 193 EELVVEERRCVDWTCSVSSPSL 214
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 79/288 (27%), Positives = 136/288 (47%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQ-KIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++KN +T +LL ST++ + + K + ++ LA LI SW+ + D +
Sbjct: 29 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDDEVTSLAKSLIKSWKKLL-DEPAAD 87
Query: 91 YVAVTKKAKLVENVKVEEVTNGEERRHDSG-NVPKKSISCMIKCND---SF------REI 140
+ KK + V T+ E R S N KS S + N +F +
Sbjct: 88 KNSEEKKKERTTPVVSPSETSPEPREESSSSNSSSKSESVDVTPNTLIATFPRAPGTSDS 147
Query: 141 VREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLL 200
VR K + LS D +TI CD ++ +E ++ ++ ++ YK + R +
Sbjct: 148 VRIKCREMLSNALQTGDDYITIG--SDCD--ELGAQIEECIFLEFKNTDMKYKNRVRSRI 203
Query: 201 FNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVG 260
N+ D +N + RR VL G+V P+ I M+A+EMASD+++ +L K+ A+ + G
Sbjct: 204 SNLKDAKNPNLRRNVLCGNVSPDRIAKMTAEEMASDELKEMRKNLTKE-AIRDHQVATSG 262
Query: 261 LSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
++ +D++ CG+C K +Y Q + D +T V C C W
Sbjct: 263 GTQ----TDLFTCGKCKKKKCTYTQVQTRSADEPMTTFVFCNECGNRW 306
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 75/290 (25%), Positives = 137/290 (47%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVE 87
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ +
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPS 81
Query: 88 DVEYVAVTKKAKLV--EN---VKVEEVTNGE-ERRHDSGNVPKKSISCMIKC---NDSFR 138
+ + KK + +N + E ++G R D N +S + +DS R
Sbjct: 82 TEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVR 141
Query: 139 EIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRC 198
RE L AL + D D + I D ++ +E A+Y++ ++ YK + R
Sbjct: 142 LKCREMLAAAL-RTGD---DYIAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVRS 193
Query: 199 LLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFP 258
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 194 RISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMAK 252
Query: 259 VGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 253 TGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 74/287 (25%), Positives = 135/287 (47%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVE 87
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ + D
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL-DGP 80
Query: 88 DVEYVAVTKK---AKLVENVKV--EEVTNGE-ERRHDSGNVPKKSISCMIKCNDSFREIV 141
+ + KK A +N EE ++G R D N +S + S + V
Sbjct: 81 STDKDSEEKKKDTAITSQNSPEAREESSSGHGSSRKDEPNARDTYVSSFPRA-PSTSDSV 139
Query: 142 REKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLF 201
R K + L+ D + I D ++ +E A+Y++ ++ YK + R +
Sbjct: 140 RLKCREMLAAALRTGEDYIAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS 195
Query: 202 NISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGL 261
N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ + G
Sbjct: 196 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMAKTGG 254
Query: 262 SRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 255 TQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 297
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 77/291 (26%), Positives = 138/291 (47%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVE 87
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ + D
Sbjct: 1 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL-DGP 59
Query: 88 DVEYVAVTKK---AKLVEN---VKVEEVTNGE-ERRHDSGNVPKKSISCMIKC---NDSF 137
+ + KK A +N + E ++G R D N +S + +DS
Sbjct: 60 STDKDSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFPRAPSTSDSV 119
Query: 138 REIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYR 197
R RE L AL + D D + I D ++ +E A+Y++ ++ YK + R
Sbjct: 120 RLKCREMLAAAL-RTGD---DYIAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVR 171
Query: 198 CLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIF 257
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 172 SRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMA 230
Query: 258 PVGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 231 KTGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 277
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 77/291 (26%), Positives = 138/291 (47%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVE 87
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ + D
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL-DGP 80
Query: 88 DVEYVAVTKK---AKLVEN---VKVEEVTNGE-ERRHDSGNVPKKSISCMIKC---NDSF 137
+ + KK A +N + E ++G R D N +S + +DS
Sbjct: 81 STDKDSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFPRAPSTSDSV 140
Query: 138 REIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYR 197
R RE L AL + D D + I D ++ +E A+Y++ ++ YK + R
Sbjct: 141 RLKCREMLAAAL-RTGD---DYIAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVR 192
Query: 198 CLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIF 257
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 193 SRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMA 251
Query: 258 PVGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 252 KTGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 78/291 (26%), Positives = 137/291 (47%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVE 87
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ + D
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL-DGP 80
Query: 88 DVEYVAVTKK---AKLVEN---VKVEEVTNGE-ERRHDSGNVPKKSISCMIKC---NDSF 137
+ KK A +N + E ++G R D N +S + +DS
Sbjct: 81 STDKDPEEKKKDTAITSQNSPEAREESSSSGNVSSRKDETNARDTYVSSFPRAPSTSDSV 140
Query: 138 REIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYR 197
R RE L AL + D D V I D ++ +E A+Y++ ++ YK + R
Sbjct: 141 RLKCREMLAAAL-RTGD---DYVAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVR 192
Query: 198 CLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIF 257
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 193 SRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMA 251
Query: 258 PVGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 252 KTGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 218 (81.8 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 74/290 (25%), Positives = 133/290 (45%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMC---- 83
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ +
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWKKLLDGPS 81
Query: 84 --WDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSISCMIKC---NDSFR 138
D E+ + E + ++ R D N +S + +DS R
Sbjct: 82 TDKDPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDETNARDTYVSSFPRAPSTSDSVR 141
Query: 139 EIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRC 198
RE L AL + D D V I D ++ +E A+Y++ ++ YK + R
Sbjct: 142 LKCREMLAAAL-RTGD---DYVAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVRS 193
Query: 199 LLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFP 258
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 194 RISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMAK 252
Query: 259 VGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 253 TGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 216 (81.1 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 77/291 (26%), Positives = 137/291 (47%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVE 87
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ + D
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL-DGP 80
Query: 88 DVEYVAVTKKAKLV---ENVKV--EEVTNGEE--RRHDSGNVPKKSISCMIKC---NDSF 137
+ + KK + +N EE ++ R D N +S + +DS
Sbjct: 81 STDKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVSSFPRAPSTSDSV 140
Query: 138 REIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYR 197
R RE L AL + D D V I D ++ +E A+Y++ ++ YK + R
Sbjct: 141 RLKCREMLAAAL-RTGD---DYVAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVR 192
Query: 198 CLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIF 257
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 193 SRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMA 251
Query: 258 PVGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 252 KTGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 66/287 (22%), Positives = 130/287 (45%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMC---- 83
A +D L ++KN +T +LL +T++ + + K + +++ LA LI SW+ +
Sbjct: 1 AGALDLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPS 60
Query: 84 --WDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSISCMIKCNDSFREIV 141
D E+ + + E + ++ R + G+ P S S + V
Sbjct: 61 TDKDSEEKKKEPASSSQNSPEAREESSSSSNSSSRKEEGSAPSNSFIPSFPRAPSTSDSV 120
Query: 142 REKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLF 201
R K + LS D + I D ++ + + ++++ ++ YK + R +
Sbjct: 121 RVKCREMLSAALRTGDDYIAI----GADEEELET-IHTPIFQELKNTDMKYKNRVRSRIA 175
Query: 202 NISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGL 261
N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ + G
Sbjct: 176 NLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKE-AIREHQMAKTGG 234
Query: 262 SRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 235 TQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 277
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 212 (79.7 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 68/290 (23%), Positives = 131/290 (45%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMC---- 83
A +D L ++KN +T +LL +T++ + + K + +++ LA LI SW+ +
Sbjct: 26 AGALDLLKELKNIPMTLELLQTTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPS 85
Query: 84 --WDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSISCMIKCNDSFREIV 141
D E+ + + E + ++ R + G+ P S S + V
Sbjct: 86 TDKDSEEKKKEPASSSQNSPEAREESSSSSNSSSRKEEGSAPSNSFIPSFPRAPSTSDSV 145
Query: 142 REKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESA---MYEKWCRSNGMYKFKYRC 198
R K + LS D + I D ++ +E A ++++ ++ YK + R
Sbjct: 146 RVKCREMLSAALRTGDDYIAI----GADEEELGSQIEEAKAPIFQELKNTDMKYKNRVRS 201
Query: 199 LLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFP 258
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 202 RIANLKDAKNPNLRKNVLCGNIPPDKFAKMTAEEMASDELKEMRKNLTKE-AIREHQMAK 260
Query: 259 VGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 261 TGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 306
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 201 (75.8 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 76/286 (26%), Positives = 129/286 (45%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++K +T LL ST+V + + K S +++ LA LI SW+ + D D +
Sbjct: 4 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL-DASDAK 62
Query: 91 YVAVTKKA---KLVENVKVEEVTNGEERRHDSGNVPKKS-ISCM----IKCNDSFREIVR 142
++A + + E + +R + VP I+ + C D+ R R
Sbjct: 63 -AREQRRAGPPPTSSSKEAPEAKDPSRKRPELPRVPSAPRITTFPPVPVTC-DAVRNKCR 120
Query: 143 EKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFN 202
E L AL D A V D C+ + I E ++ ++ YK + R + N
Sbjct: 121 EMLTAALQTDHDHMA--VGAD----CEGLSAQI--EECIFRDVGNTDMKYKNRVRSRISN 172
Query: 203 ISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLS 262
+ D +N D RR VL G + P+ I M+++EMASD+++ + K+ A+ + G +
Sbjct: 173 LKDAKNPDLRRNVLCGVITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMARTGGT 231
Query: 263 RKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+ +D++ CGRC +Y Q + D +T V C C W
Sbjct: 232 Q----TDLFTCGRCRRKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 273
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 204 (76.9 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 72/285 (25%), Positives = 128/285 (44%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
ID L ++KN ++ + L ST++ + + K S +++Q LA LI +W+ + ++ E
Sbjct: 27 IDLLQELKNMKMSLETLQSTRIGMSVNAVRKQSSDEEVQTLAKSLIKAWKKL---LDGSE 83
Query: 91 YVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSISCMIKCNDSF------REIVREK 144
KK + + G + PK + + F + VR K
Sbjct: 84 GKPEEKKGESPLQSSSSKDCPGSSDTSNKPETPKTPTTPVTPKFTMFPPAPVTTDSVRTK 143
Query: 145 LYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNIS 204
+ L D TI C+ +A +E +Y+++ ++ YK + R + N+
Sbjct: 144 CRELLVAALQTDGDHQTIGA--DCE--HMAAQIEDYIYQEFKSTDMKYKTRLRSRISNLK 199
Query: 205 DPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGH-IFPVGLSR 263
D +N D RR VL G++ PE I +M+A+EMAS +++ L K+ + H + VG +
Sbjct: 200 DQKNPDLRRNVLCGNISPERIASMTAEEMASPELKEIRKALTKES--IREHQLSKVGGTE 257
Query: 264 KIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+D++ CG+C +Y Q + D +T V C C W
Sbjct: 258 ----TDMFVCGKCKGKNCTYTQVQTRSADEPMTTFVLCNECGNRW 298
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 198 (74.8 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 74/284 (26%), Positives = 127/284 (44%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++K IT LL ST+V + + K S +++ LA LI SW+ + D D +
Sbjct: 28 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL-DASDAK 86
Query: 91 YVAVTKKAKLVENVK-VEEVTNGEERRHDSGNVPKKS-ISCM----IKCNDSFREIVREK 144
+ L + + E + +R + P I+ + C D+ R RE
Sbjct: 87 ARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTC-DAVRNKCREM 145
Query: 145 LYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNIS 204
L AL D A + D C+ + I E ++ ++ YK + R + N+
Sbjct: 146 LTAALQTDHDHVA--IGAD----CERLSAQI--EECIFRDVGNTDMKYKNRVRSRISNLK 197
Query: 205 DPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSRK 264
D +N D RR VL G + P+ I M+++EMASD+++ + K+ A+ + G ++
Sbjct: 198 DAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMARTGGTQ- 255
Query: 265 IIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+D++ CG+C +Y Q + D +T V C C W
Sbjct: 256 ---TDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 197 (74.4 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 75/285 (26%), Positives = 129/285 (45%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++K +T LL ST+V + + K S +++ LA LI SW+ + D D +
Sbjct: 28 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLL-DASDAK 86
Query: 91 YVAVTKKAKLVENVKVE--EVTNGEERRHDSGNVPKKS-ISCM----IKCNDSFREIVRE 143
+ L + E E + +R + +P I+ + C D+ R RE
Sbjct: 87 ARERRRGGSLPTSSSKEASEAQDPSRKRPELPRMPSTPRITTFPPVPVTC-DAVRTKCRE 145
Query: 144 KLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNI 203
L AL D A + D C+ + A +E ++ ++ YK + R L N+
Sbjct: 146 MLTAALQTDHDHVA--IGAD----CECL--AGQIEECIFRDVGNTDMKYKNRVRSRLSNL 197
Query: 204 SDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSR 263
D +N RRKVL G + P+ I M+++EMASD+++ + K+ A+ + G ++
Sbjct: 198 KDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMARTGGTQ 256
Query: 264 KIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+D++ CG+C +Y Q + D +T V C C W
Sbjct: 257 ----TDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 297
>TAIR|locus:504954948 [details] [associations]
symbol:AT5G42325 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017923 Pfam:PF07500
PROSITE:PS51319 PROSITE:PS51321 GO:GO:0005634 EMBL:CP002688
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
KO:K03145 IPI:IPI00542827 RefSeq:NP_680377.1 UniGene:At.65714
ProteinModelPortal:F4K1I5 SMR:F4K1I5 PRIDE:F4K1I5
EnsemblPlants:AT5G42325.1 GeneID:834238 KEGG:ath:AT5G42325
OMA:SADMIMT PhylomeDB:F4K1I5 Uniprot:F4K1I5
Length = 233
Score = 166 (63.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 49/132 (37%), Positives = 68/132 (51%)
Query: 111 NGEERRHDSGNVPKK--SISCMIKCNDSFREIVREKLYDALSKVSDEAAD-KVTIDLVKA 167
+G E+ D P K + S M K DS R+ V E L +L+KV+ E D ++ ++
Sbjct: 89 SGREKSRDR-ETPVKIPTHSTMKKTGDSKRDKVHEILQSSLAKVATEVVDTEMKRRVMTV 147
Query: 168 CDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIIN 227
CDP VA+ VESAM +LFN+ D N D RRKVL+G + E ++
Sbjct: 148 CDPWVVAVSVESAM----------------SILFNMGDSNNPDLRRKVLIGEISGERLVK 191
Query: 228 MSAKEMASDKIQ 239
M EM S+KIQ
Sbjct: 192 MEKDEMGSEKIQ 203
Score = 48 (22.0 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 16/79 (20%), Positives = 34/79 (43%)
Query: 3 KKVMDLCEXXXXXXXXXXWKEGVVEEARCIDALDQIKNS--SITYQLLVSTQVIRHLLPM 60
++ ++L E E E R +DA++++K + S+ ++ T + + L
Sbjct: 4 REFLELFEAALRAAKSVKGAESSPEVLRFVDAMNRLKEAPKSLVCDVVCKTSMGKGLGFF 63
Query: 61 LKHPSQKIQKLAYDLISSW 79
+ H + KI+ L W
Sbjct: 64 IDHKNPKIRSEGRILRDLW 82
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 185 (70.2 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 76/285 (26%), Positives = 127/285 (44%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++KN IT LL ST+V + + K S +++ LA LI SW+ + DV D +
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL-DVSDGK 85
Query: 91 YVAVTKKAKL-VENVK-VEEVTNGEERRHDSGNVPKKS-ISCM----IKCNDSFREIVRE 143
+ L + K T+ ++ D P I+ I C D+ R RE
Sbjct: 86 SRNQGRGTPLPTSSSKDASRTTDLSCKKPDPPRTPSTPRITTFPQVPITC-DAVRNKCRE 144
Query: 144 KLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNI 203
L AL D A V C+ + I E ++ ++ YK + R + N+
Sbjct: 145 MLTLALQTDHDHVAVGVN------CEHLSSQI--EECIFLDVGNTDMKYKNRVRSRISNL 196
Query: 204 SDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSR 263
D +N RR VL G + P+ I M+++EMASD+++ + K+ A+ + G ++
Sbjct: 197 KDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMARTGGTQ 255
Query: 264 KIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+D++ C +C +Y Q + D +T +V C C W
Sbjct: 256 ----TDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 184 (69.8 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 74/285 (25%), Positives = 133/285 (46%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++KN IT LL ST+V + + K S +++ LA LI SW+ + DV D +
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL-DVSDGK 85
Query: 91 YVAVTKKAKLVENVKVEE--VTNGEERRHD---SGNVPKKSI--SCMIKCNDSFREIVRE 143
+ L + + T+ ++ D + + P+ + I C D+ R RE
Sbjct: 86 SRDQGRGTPLPTSSSKDASGTTDLSCKKPDPPRTSSTPRITTFPQVPITC-DAVRNKCRE 144
Query: 144 KLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNI 203
L AL +D D V + + +C+ + I E ++ ++ YK + R + N+
Sbjct: 145 MLTLALQ--TDH--DHVAVGV--SCEHLSSQI--EECIFLDVGNTDMKYKNRVRSRISNL 196
Query: 204 SDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSR 263
D +N RR VL G + P+ I M+++EMASD+++ + K+ A+ + G ++
Sbjct: 197 KDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMARTGGTQ 255
Query: 264 KIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+D++ C +C +Y Q + D +T +V C C W
Sbjct: 256 ----TDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 184 (69.8 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 74/285 (25%), Positives = 133/285 (46%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++KN IT LL ST+V + + K S +++ LA LI SW+ + DV D +
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL-DVSDGK 85
Query: 91 YVAVTKKAKLVENVKVEE--VTNGEERRHD---SGNVPKKSI--SCMIKCNDSFREIVRE 143
+ L + + T+ ++ D + + P+ + I C D+ R RE
Sbjct: 86 SRDQGRGTPLPTSSSKDASGTTDLSCKKPDPPRTSSTPRITTFPQVPITC-DAVRNKCRE 144
Query: 144 KLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNI 203
L AL +D D V + + +C+ + I E ++ ++ YK + R + N+
Sbjct: 145 MLTLALQ--TDH--DHVAVGV--SCEHLSSQI--EECIFLDVGNTDMKYKNRVRSRISNL 196
Query: 204 SDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSR 263
D +N RR VL G + P+ I M+++EMASD+++ + K+ A+ + G ++
Sbjct: 197 KDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMARTGGTQ 255
Query: 264 KIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+D++ C +C +Y Q + D +T +V C C W
Sbjct: 256 ----TDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 184 (69.8 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 73/286 (25%), Positives = 129/286 (45%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++K +T LL ST+V + + K S +++ LA LI SW+ + +
Sbjct: 28 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKLL-GMGQAA 86
Query: 91 YVAVTKKAKLVENVKVEEVTN---GEERRHDSGNVPKKS-ISCM----IKCNDSFREIVR 142
+ + + L+ +E + + G +R + +P I+ + C D+ R R
Sbjct: 87 WAEWRRNSCLLPLTSMEIMGSRDPGVRKRPELPRMPSTPRITTFPPVPVTC-DAVRTKCR 145
Query: 143 EKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFN 202
E L AL D A + D I+ IL + + ++ YK + R L N
Sbjct: 146 EMLTAALQTDHDHVA--IGADCECLAGQIEEYILWQGVGFG----TDMKYKNRVRSRLSN 199
Query: 203 ISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLS 262
+ D +N RRKVL G + P+ I M+++EMASD+++ + K+ A+ + G +
Sbjct: 200 LKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMARTGGT 258
Query: 263 RKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 259 Q----TDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 300
>UNIPROTKB|F1NBF9 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:AADN02019186
EMBL:AADN02019187 IPI:IPI00585750 Ensembl:ENSGALT00000009608
Uniprot:F1NBF9
Length = 312
Score = 184 (69.8 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 66/263 (25%), Positives = 126/263 (47%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++K+ +T LL ST++ + + K S +++ LA LI SW+ + D++ E
Sbjct: 53 MDLLKELKSMPMTLDLLQSTRIGMSVNALRKQSSDEEVIALAKSLIKSWKKLL-DLDASE 111
Query: 91 YVAVTKKAKL-VENVKVEEVTNGEERRHDSGNVPKKS-----ISCM----IKCNDSFREI 140
+ KK L + +E N ++ + P K+ I+ + C D+ R
Sbjct: 112 EKSEEKKKNLSLPTSSSKETGNSRDQSSNKRQEPPKTPTTPKITTFPPAPVTC-DAVRNK 170
Query: 141 VREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLL 200
RE L AL D A + D C+ +A +E +Y+ ++ YK + R +
Sbjct: 171 CREMLTTALQADDDYIA--IGAD----CE--HIAAQIEECIYQDIKNTDMKYKNRVRSRI 222
Query: 201 FNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVG 260
N+ D +N + ++ VL G + PE I M+++EMAS++++ + K+ A+ + G
Sbjct: 223 SNLKDSKNPELKKNVLCGAITPEQIAVMTSEEMASNELKEIRKAMTKE-AIREHQMAKTG 281
Query: 261 LSRKIIVSDIYECGRCGHNKISY 283
++ +D++ CG+C +Y
Sbjct: 282 GTQ----TDLFTCGKCKKKNCTY 300
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 180 (68.4 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 75/285 (26%), Positives = 132/285 (46%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++KN IT LL ST+V + + K S +++ LA LI SW+ + DV D +
Sbjct: 1 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKLL-DVSDGK 59
Query: 91 YVAVTKKAKLVENVKVEE--VTNGEERRHD---SGNVPKKSI--SCMIKCNDSFREIVRE 143
+ L + + T+ ++ D + + P+ + I C D+ R RE
Sbjct: 60 SRDQGRGTPLPTSSSKDASGTTDLSCKKPDPPRTSSTPRITTFPQVPITC-DAVRNKCRE 118
Query: 144 KLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNI 203
L AL D A V+ + + + I+ IL++ + S YK + R + N+
Sbjct: 119 MLTLALQTDHDHVAVGVSCEHLSS--QIEEYILLDLS------GSQIGYKNRVRSRISNL 170
Query: 204 SDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSR 263
D +N RR VL G + P+ I M+++EMASD+++ + K+ A+ + G ++
Sbjct: 171 KDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMARTGGTQ 229
Query: 264 KIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+D++ C +C +Y Q + D +T +V C C W
Sbjct: 230 ----TDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 270
>UNIPROTKB|Q5JRI7 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL590548 EMBL:AL355803
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
UniGene:Hs.505004 UniGene:Hs.736326 HGNC:HGNC:11614 IPI:IPI00647399
SMR:Q5JRI7 STRING:Q5JRI7 Ensembl:ENST00000339217
Ensembl:ENST00000440819 Uniprot:Q5JRI7
Length = 246
Score = 174 (66.3 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 67/259 (25%), Positives = 118/259 (45%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++K IT LL ST+V + + K S +++ LA LI SW+ + D D +
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL-DASDAK 59
Query: 91 YVAVTKKAKLVENVK-VEEVTNGEERRHDSGNVPKKS-ISCM----IKCNDSFREIVREK 144
+ L + + E + +R + P I+ + C D+ R RE
Sbjct: 60 ARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTC-DAVRNKCREM 118
Query: 145 LYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNIS 204
L AL D A + D C+ + I E ++ ++ YK + R + N+
Sbjct: 119 LTAALQTDHDHVA--IGAD----CERLSAQI--EECIFRDVGNTDMKYKNRVRSRISNLK 170
Query: 205 DPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSRK 264
D +N D RR VL G + P+ I M+++EMASD+++ + K+ A+ + G ++
Sbjct: 171 DAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMARTGGTQ- 228
Query: 265 IIVSDIYECGRCGHNKISY 283
+D++ CG+C +Y
Sbjct: 229 ---TDLFTCGKCRKKNCTY 244
>POMBASE|SPAC20H4.03c [details] [associations]
symbol:tfs1 "transcription elongation factor TFIIS"
species:4896 "Schizosaccharomyces pombe" [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 PomBase:SPAC20H4.03c
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
GO:GO:0000991 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006379
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EMBL:U20526 PIR:S63845 RefSeq:NP_593623.1 ProteinModelPortal:P49373
SMR:P49373 STRING:P49373 EnsemblFungi:SPAC20H4.03c.1 GeneID:2541941
KEGG:spo:SPAC20H4.03c OrthoDB:EOG4CC79J NextBio:20803025
Uniprot:P49373
Length = 293
Score = 179 (68.1 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 62/280 (22%), Positives = 122/280 (43%)
Query: 32 IDALDQIKNSSI-TYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWRDMCWDVEDVE 90
I+ + ++KN + T +LL T++ + + HP++K+ + A +++ W+ ++
Sbjct: 26 INIMTRLKNEVVATEELLKETRLGLVVGKLRSHPNEKVGEQAREIVKKWKADVSKGRPLK 85
Query: 91 YVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSISCMIKC-NDSFREIVREKLYDAL 149
T + +++ SG KS + + +D R +Y+AL
Sbjct: 86 TTTTTSSTPSKHADVGSQAQKQVQKQSSSGQRTFKSDNVNVNVTDDKIRNNCIGLMYNAL 145
Query: 150 SKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQ 209
SDE++ + + KA + I +L +A ++ Y+ + R L N+ D N
Sbjct: 146 VIDSDESSSLI---IAKAKE-IDAQVLARAAG-----KTGSEYRNRMRSLYMNLKDKNNP 196
Query: 210 DFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPV-GLSRKIIVS 268
R VL + P+ + M++ E+AS+ + +D L ++F G + V+
Sbjct: 197 KLRASVLRNEITPQRLSTMTSAELASEDRR------KEDAKLEQENLFHAQGAKPQKAVT 250
Query: 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
D++ CG+C K+SY Q + D +T C C W
Sbjct: 251 DLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRW 290
>WB|WBGene00012000 [details] [associations]
symbol:T24H10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:Z54216 PIR:T25250
RefSeq:NP_495941.1 UniGene:Cel.14290 ProteinModelPortal:P52652
SMR:P52652 STRING:P52652 PaxDb:P52652 EnsemblMetazoa:T24H10.1
GeneID:174450 KEGG:cel:CELE_T24H10.1 UCSC:T24H10.1 CTD:174450
WormBase:T24H10.1 InParanoid:P52652 OMA:KTNIGIK NextBio:884086
Uniprot:P52652
Length = 308
Score = 179 (68.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 65/290 (22%), Positives = 121/290 (41%)
Query: 24 GVVEEARCIDALDQIKNSSITYQLLVSTQV-IRHLLPMLKHPSQKIQKLAYDLISSWRDM 82
G+ +C LDQ+ ++ +++ T + I+ + K + K A ++I W+++
Sbjct: 21 GMESVEQCNKLLDQLSKIPMSIEIIQKTNIGIKVNMMRKKVTDDAVAKRAKNIIKDWKNV 80
Query: 83 CWDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSISCMIKCNDSFREIVR 142
+ AK VEE +++ P+ S I +
Sbjct: 81 VDGKSKSQDDGGAPPAKKHRKESVEEAKPEKKKIEAPYKRPEPSSRPEIVAQFASASFPP 140
Query: 143 EKLYDALSKVSDEAADKVTI---DLVKAC-DPIQVAILVESAMYEKWCRSNGMYKFKYRC 198
+ L + +++ + D+ + DP ++A+ +E +Y +N Y R
Sbjct: 141 KHLENDETRLKSAQLLLSALRFGDMPQGTLDPEELAVQIEEKLYSVHRDTNKSYSAAVRS 200
Query: 199 LLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFP 258
+FN+ D +N R VL G V+ E M+++EMAS +I+ K+ L H
Sbjct: 201 RIFNLRDKKNLALRENVLTGVVRAEKFATMTSEEMASAEIREMRDKFTKEAILE--HQMS 258
Query: 259 VGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
V ++ SD+++CG+CG +Y Q + D +T V CL C W
Sbjct: 259 V---QQGTPSDMFKCGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRW 305
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 161 (61.7 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 51/181 (28%), Positives = 87/181 (48%)
Query: 128 SCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCR 187
SC + DS R+ E L AL K D+ D ++ CD ++A +E +Y++
Sbjct: 179 SCYLT-GDSVRDKCVEMLSAAL-KAEDDFKD-YGVN----CD--KLASEIEDHIYQELKS 229
Query: 188 SNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDK 247
++ Y+ + R + N+ DP N RR VL G + PE I M+A+EMASD+++ + + +
Sbjct: 230 TDMKYRNRVRSRISNLKDPRNPGLRRNVLSGTISPELIAKMTAEEMASDELRELRNAMTQ 289
Query: 248 DGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQY 306
+ A+ + G + +D+ C +C +Y Q + D +T V C C
Sbjct: 290 E-AIREHQMAKTGGT----TTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNR 344
Query: 307 W 307
W
Sbjct: 345 W 345
Score = 57 (25.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQK-IQKLAYDLISSWR 80
+D L ++ + ++ QLL +T++ + + KH S K + LA LI +W+
Sbjct: 27 LDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 76
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 160 (61.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 47/168 (27%), Positives = 81/168 (48%)
Query: 141 VREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLL 200
VR+K + LS +A D D CD ++A +E +Y++ ++ Y+ + R +
Sbjct: 186 VRDKCVEMLSAAL-KAEDNFK-DYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRI 241
Query: 201 FNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVG 260
N+ DP N RR VL G + PE I M+A+EMASD+++ + + ++ A+ + G
Sbjct: 242 SNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQE-AIREHQMAKTG 300
Query: 261 LSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+ +D+ C +C +Y Q + D +T V C C W
Sbjct: 301 GT----TTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 344
Score = 57 (25.1 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQK-IQKLAYDLISSWR 80
+D L ++ + ++ QLL +T++ + + KH S K + LA LI +W+
Sbjct: 27 LDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 76
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 157 (60.3 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 44/167 (26%), Positives = 78/167 (46%)
Query: 141 VREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLL 200
VR+K + LS AD D CD ++A +E +Y++ ++ Y+ + R +
Sbjct: 188 VRDKCVEMLSAALK--ADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRI 243
Query: 201 FNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVG 260
N+ DP N RR VL G + I M+A+EMASD+++ + + ++ A+ + G
Sbjct: 244 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQE-AIREHQMAKTG 302
Query: 261 LSRKIIVSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYW 307
+ +D+++C +C +Y D +T V C C W
Sbjct: 303 GT----TTDLFQCSKCKKKNCTYNQVQTRTDEPMTTFVLCNECGNRW 345
Score = 56 (24.8 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQK-IQKLAYDLISSWRDMCWDVEDVE 90
+D L ++ + ++ QLL +T++ + + KH S K + LA LI +W+ + ++
Sbjct: 27 LDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNWKQL------LD 80
Query: 91 YVAVTKKAKLVENVKVEEVTNG 112
A K K E VK ++ G
Sbjct: 81 SPATPKGEKGEERVKAKKKEKG 102
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 157 (60.3 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 49/182 (26%), Positives = 89/182 (48%)
Query: 127 ISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWC 186
+S ++ DS R+ E L AL + D+ D T C+ + I E +Y++
Sbjct: 238 LSPRLQTGDSIRDKCIEMLTAAL-RTDDDYKDYGT-----NCEAMGAEI--EDYIYQETK 289
Query: 187 RSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLD 246
++ YK + R + N+ DP+N + R+ VL G ++ I +M+A+EMASD+++ + L
Sbjct: 290 ATDMKYKNRVRSRISNLKDPKNPNLRKNVLAGAIELSRIASMTAEEMASDELKQLRNVLT 349
Query: 247 KDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQ 305
++ A+ + G + +D+ +CG+C +Y Q + D +T V C C
Sbjct: 350 QE-AIREHQMAKTGGT----TTDLLQCGKCKKKNCTYNQVQTRSADEPMTTFVLCNECGN 404
Query: 306 YW 307
W
Sbjct: 405 RW 406
Score = 58 (25.5 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKH-PSQKIQKLAYDLISSWR 80
+D L ++K+ ++T +LL T++ + + KH + + LA LI +W+
Sbjct: 27 LDLLRELKDFNMTLKLLQDTRIGMSVNGIRKHCTDEDVVNLAKILIKNWK 76
>CGD|CAL0002729 [details] [associations]
symbol:orf19.4537 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0001139 "core RNA polymerase II
recruiting transcription factor activity" evidence=IEA] [GO:0000993
"RNA polymerase II core binding" evidence=IEA] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 CGD:CAL0002729 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
KO:K03145 TIGRFAMs:TIGR01385 EMBL:AACQ01000143 EMBL:AACQ01000140
RefSeq:XP_712868.1 RefSeq:XP_712962.1 ProteinModelPortal:Q59T94
SMR:Q59T94 STRING:Q59T94 GeneID:3645430 GeneID:3645524
KEGG:cal:CaO19.12012 KEGG:cal:CaO19.4537 Uniprot:Q59T94
Length = 305
Score = 170 (64.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 69/301 (22%), Positives = 132/301 (43%)
Query: 23 EGVVEEARCIDALDQIKNSSI--TYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWR 80
E V++ + L+ I N + + +LL T+V + H S +I L +I +WR
Sbjct: 14 EKAVDDTTILKLLN-ILNDGVKPSEKLLRETKVGVAVNKFRSHDSAEINGLVKKMIRNWR 72
Query: 81 DMCWDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGN---VPKKSISCMIKC---- 133
D ++ + KK + ++ SG+ PK S S
Sbjct: 73 DAVQAEKNNK-----KKLAIAAGTGTGTPSSSAISPSSSGSGSTTPKPSESTTPSAARKG 127
Query: 134 -NDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDP---IQVAILVESAMYE-KWCRS 188
+ + V +LY+ ++ + +A ++ + + P +++AI +E+ +Y+ ++ +
Sbjct: 128 PRNPKTDGVNTQLYENDTRNASVSALYTSLAVDRDDSPKHILRIAIEIEAEVYKSEYSKV 187
Query: 189 NGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKD 248
+ Y+ + R N+ + +N + R ++L + P I M+ EMA + ++ L K
Sbjct: 188 SDSYRNRLRSFTMNLRNKKNPELRERILSKQILPAAFIKMTPNEMAPEALKKEIEKLHKQ 247
Query: 249 GALVTGHIFPV-GLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQY 306
++F G + K V+D + CG+C H K+SY Q + D LT TC NC
Sbjct: 248 ------NLFDAQGATEKRAVTDRFTCGKCKHKKVSYYQMQTRSADEPLTTFCTCENCGNR 301
Query: 307 W 307
W
Sbjct: 302 W 302
>FB|FBgn0030663 [details] [associations]
symbol:CG8117 species:7227 "Drosophila melanogaster"
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017890 Pfam:PF01096 Pfam:PF07500 PIRSF:PIRSF006704
PROSITE:PS51133 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0022008 EMBL:AE014298 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003676 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0032784 eggNOG:COG1594 KO:K03145 HSSP:P23193
GeneTree:ENSGT00390000017794 EMBL:BT022128 EMBL:BT023150
RefSeq:NP_573049.2 UniGene:Dm.26636 SMR:Q9VXS6 IntAct:Q9VXS6
MINT:MINT-861025 STRING:Q9VXS6 EnsemblMetazoa:FBtr0074050
GeneID:32499 KEGG:dme:Dmel_CG8117 UCSC:CG8117-RA
FlyBase:FBgn0030663 InParanoid:Q9VXS6 OMA:PEELGSN OrthoDB:EOG4WSTSW
GenomeRNAi:32499 NextBio:778778 Uniprot:Q9VXS6
Length = 162
Score = 151 (58.2 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 42/141 (29%), Positives = 67/141 (47%)
Query: 169 DPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINM 228
DP +A +E A+Y YK + R L N+ DP+N + R+K LLG + PE + M
Sbjct: 28 DPDDMAAKLEDAIYGDLNGCKVKYKNRIRSRLANLRDPKNPELRQKFLLGQITPEELSKM 87
Query: 229 SAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISYQHSSI 288
+ +EMASD ++ +D ++ + V ++ +D ++C RC S H
Sbjct: 88 TPEEMASDDMKQMRQKYVQD-SINAAQMAKVQGTK----TDQFKCERCDKRNCSQLHIRD 142
Query: 289 LDDYNLTRHVTCLNCNQYWVS 309
D+ +T V C C W S
Sbjct: 143 GDEPIIT-FVICDECGNRWKS 162
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 150 (57.9 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 45/168 (26%), Positives = 80/168 (47%)
Query: 141 VREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLL 200
VR+K + LS AD D CD ++A +E +Y++ ++ Y+ + R +
Sbjct: 187 VRDKCVEMLSAALK--ADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRI 242
Query: 201 FNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVG 260
N+ DP N RR VL G + I M+A+EMASD+++ + + ++ A+ + G
Sbjct: 243 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQE-AIREHQMAKTG 301
Query: 261 LSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+ +D+++C +C +Y Q + D +T V C C W
Sbjct: 302 GT----TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
Score = 56 (24.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQK-IQKLAYDLISSWR 80
+D L ++ + ++ QLL +T++ + + KH S K + LA LI +W+
Sbjct: 27 LDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 76
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 150 (57.9 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 45/168 (26%), Positives = 80/168 (47%)
Query: 141 VREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLL 200
VR+K + LS AD D CD ++A +E +Y++ ++ Y+ + R +
Sbjct: 188 VRDKCVEMLSAALK--ADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRI 243
Query: 201 FNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVG 260
N+ DP N RR VL G + I M+A+EMASD+++ + + ++ A+ + G
Sbjct: 244 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQE-AIREHQMAKTG 302
Query: 261 LSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+ +D+++C +C +Y Q + D +T V C C W
Sbjct: 303 GT----TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 346
Score = 56 (24.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQK-IQKLAYDLISSWRDMCWDVEDVE 90
+D L ++ + ++ QLL +T++ + + KH S K + LA LI +W+ + ++
Sbjct: 27 LDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCSNKEVVALAKVLIRNWKQL------LD 80
Query: 91 YVAVTKKAKLVENVKVEEVTNG 112
A K K E VK ++ G
Sbjct: 81 SPATPKGEKGEERVKAKKKEKG 102
>UNIPROTKB|I3LFG3 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
EMBL:CU861549 Ensembl:ENSSSCT00000023384 Uniprot:I3LFG3
Length = 222
Score = 156 (60.0 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 34/105 (32%), Positives = 62/105 (59%)
Query: 163 DLVKACDPIQ-VAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVK 221
DLV + ++ +A +E+A+++ +NG Y+ KYR LLFN+ DP N D KV+ G V
Sbjct: 13 DLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIHGDVT 72
Query: 222 PETIINMSAKEMASDKIQLWNHHLDKDGALVT---GHIFPVGLSR 263
P+ ++ M++ ++A ++ W +K G++V+ G + P S+
Sbjct: 73 PQGLVRMNSVQLAPQELARWRDQEEKRGSMVSVDCGPLAPPATSK 117
>ASPGD|ASPL0000075205 [details] [associations]
symbol:AN4861 species:162425 "Emericella nidulans"
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0001139 "core RNA
polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0000993 "RNA polymerase II core binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 EMBL:BN001303 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
HOGENOM:HOG000195015 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EnsemblFungi:CADANIAT00005544 Uniprot:C8V9V9
Length = 304
Score = 144 (55.7 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 37/136 (27%), Positives = 63/136 (46%)
Query: 174 AILVESAMYEKWC-RSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKE 232
A VE+A Y+ + + Y+ K R L N+ + N R +VL V PE + M+ +E
Sbjct: 172 AAAVEAAAYDAYGPETKEPYRTKIRSLFQNLKNKSNPTLRVRVLSNEVTPERFVKMTHEE 231
Query: 233 MASDKIQLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISYQHSSILD-D 291
+ SD+ + + + K+ R I S +CG+CG K++Y + D
Sbjct: 232 LRSDEQREKDRKIQKENM---DKAMVAQAERSISTS--LQCGKCGQRKVTYTEAQTRSAD 286
Query: 292 YNLTRHVTCLNCNQYW 307
+T TC++C + W
Sbjct: 287 EPMTLFCTCMHCGKSW 302
Score = 50 (22.7 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 29 ARCIDALDQIKNS-SITYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWRD 81
A + L +++ + LL ST+V + +H + ++ +L+ +++S WR+
Sbjct: 26 ANIVSLLKELQQGVKASEDLLRSTRVGIIVNKFKQHKAPEVARLSSEIVSKWRN 79
>SGD|S000003011 [details] [associations]
symbol:DST1 "General transcription elongation factor TFIIS,
enables RNA polymerase" species:4932 "Saccharomyces cerevisiae"
[GO:0000993 "RNA polymerase II core binding" evidence=IPI]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP;IDA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IMP] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IGI;IDA;IMP] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IDA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001193 "maintenance of transcriptional
fidelity during DNA-dependent transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0031440 "regulation
of mRNA 3'-end processing" evidence=IGI;IMP] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 SGD:S000003011 GO:GO:0005634 EMBL:BK006941
GO:GO:0046872 GO:GO:0008270 GO:GO:0001012 GO:GO:0045899
GO:GO:0032968 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006362
GO:GO:0006379 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0031440
GO:GO:0001139 GO:GO:0031564 eggNOG:COG1594 PDB:1PQV PDB:1Y1V
PDB:1Y1Y PDB:3GTM PDB:3PO3 PDBsum:1PQV PDBsum:1Y1V PDBsum:1Y1Y
PDBsum:3GTM PDBsum:3PO3 GO:GO:0042797 GO:GO:0001193
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OrthoDB:EOG4CC79J EMBL:M36724
EMBL:D12478 EMBL:M60770 EMBL:Z72565 EMBL:X00047 PIR:A42921
RefSeq:NP_011472.1 PDB:1ENW PDB:1EO0 PDBsum:1ENW PDBsum:1EO0
ProteinModelPortal:P07273 SMR:P07273 DIP:DIP-2307N IntAct:P07273
MINT:MINT-1167083 STRING:P07273 PaxDb:P07273 PeptideAtlas:P07273
EnsemblFungi:YGL043W GeneID:852839 KEGG:sce:YGL043W CYGD:YGL043w
OMA:ESEHPPQ EvolutionaryTrace:P07273 NextBio:972417
Genevestigator:P07273 GermOnline:YGL043W Uniprot:P07273
Length = 309
Score = 155 (59.6 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 71/294 (24%), Positives = 120/294 (40%)
Query: 28 EARCIDALDQIKNSSI-TYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWRDMC--- 83
+A ++ L + + T +LL T+V + K + +I KL +ISSW+D
Sbjct: 20 DAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKDAINKN 79
Query: 84 -WDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDS-GNVPKKSISCMIKCNDSFREIV 141
+ ++ + V E NG ++ S + K+ K +S + V
Sbjct: 80 KRSRQAQQHHQDHAPGNAEDKTTVGESVNGVQQPASSQSDAMKQDKYVSTKPRNSKNDGV 139
Query: 142 REKLYDALSKVSDEAADKVTIDLVKACD-PIQ----VAILVESAMYE-KWCRSN-GMYKF 194
+Y K+ D+ + L K + P Q A +ES M + C +N YK
Sbjct: 140 DTAIYH--HKLRDQVLKALYDVLAKESEHPPQSILHTAKAIESEMNKVNNCDTNEAAYKA 197
Query: 195 KYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTG 254
+YR + N+ N D + K+ G + PE + AK++A ++ + K L
Sbjct: 198 RYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQN-LYNA 256
Query: 255 HIFPVGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G + + V+D + CG+C K+SY Q + D LT TC C W
Sbjct: 257 Q----GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306
>UNIPROTKB|E7ER40 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00966918
ProteinModelPortal:E7ER40 SMR:E7ER40 Ensembl:ENST00000515594
ArrayExpress:E7ER40 Bgee:E7ER40 Uniprot:E7ER40
Length = 861
Score = 162 (62.1 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 45/140 (32%), Positives = 72/140 (51%)
Query: 102 ENVKVEEVTNGEERRHDSGNVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVT 161
+ +K ++V G H + + K S D R+ VR L D L K ++ KV
Sbjct: 168 QEMKKKKVEKGVLNVHPAASASKPSA-------DQIRQSVRHSLKDILMKRLTDSNLKVP 220
Query: 162 IDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVK 221
+ KA +VA +E ++ + ++ YK KYR L+FN+ DP+N +KVL G V
Sbjct: 221 EE--KAA---KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVT 275
Query: 222 PETIINMSAKEMASDKIQLW 241
P+ +I MS +E+AS ++ W
Sbjct: 276 PDHLIRMSPEELASKELAAW 295
>UNIPROTKB|E7EVH3 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL050329 HGNC:HGNC:8921 ChiTaRS:PHF3 EMBL:AL445676
EMBL:AL445677 EMBL:AL513043 IPI:IPI00984758
ProteinModelPortal:E7EVH3 SMR:E7EVH3 Ensembl:ENST00000506783
ArrayExpress:E7EVH3 Bgee:E7EVH3 Uniprot:E7EVH3
Length = 1072
Score = 162 (62.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 45/140 (32%), Positives = 72/140 (51%)
Query: 102 ENVKVEEVTNGEERRHDSGNVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVT 161
+ +K ++V G H + + K S D R+ VR L D L K ++ KV
Sbjct: 713 QEMKKKKVEKGVLNVHPAASASKPSA-------DQIRQSVRHSLKDILMKRLTDSNLKVP 765
Query: 162 IDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVK 221
+ KA +VA +E ++ + ++ YK KYR L+FN+ DP+N +KVL G V
Sbjct: 766 EE--KAA---KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVT 820
Query: 222 PETIINMSAKEMASDKIQLW 241
P+ +I MS +E+AS ++ W
Sbjct: 821 PDHLIRMSPEELASKELAAW 840
>GENEDB_PFALCIPARUM|PF07_0057 [details] [associations]
symbol:PF07_0057 "transcription elongation
factor s-ii, putative" species:5833 "Plasmodium falciparum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008023 "transcription elongation
factor complex" evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 130 (50.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 44/180 (24%), Positives = 83/180 (46%)
Query: 134 NDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCR---SNG 190
ND R+ ++ L+ A S + I+ K D + +E +Y+ + S
Sbjct: 227 NDMHRDKAKQFLFKAFVVGSSDNL-LYFIEKKKLND---IIYNIECELYKVYMEKRSSQK 282
Query: 191 MYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGA 250
Y + + + FN+SD +N +F KV + + + M++++MASD+ + ++
Sbjct: 283 EYNMQLKSIKFNLSDKKNPNFNEKVYSEFISSKALATMNSQDMASDEKKNERKKCLQESL 342
Query: 251 LVTGHIFPVG--LSRKIIVSDIYECGRC-GHNKISYQHSSILDDYNLTRHVTCLNCNQYW 307
L + V L +K + ++C +C G++ I +Q + D +T VTCL CN W
Sbjct: 343 LACQSDWDVKNILLKKSRKGE-FQCFKCKGYDTIYHQLQTRSSDEPMTTFVTCLKCNNRW 401
Score = 67 (28.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 19/99 (19%), Positives = 51/99 (51%)
Query: 23 EGVVEEARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWRDM 82
E +++E I L+ +K+ I +L T++ + + K ++ +Q L+ DL+ W++
Sbjct: 37 EDIIKEV--ITNLNLLKDVEINKDILRITKIGITVNKLTKINNELVQNLSKDLVEKWKN- 93
Query: 83 CWDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGN 121
+ +E ++ K ++++ K E++ ++ ++ N
Sbjct: 94 ---IAKMEKLSSLKNYEMMKKRKSEKIEMANDKINNDNN 129
>UNIPROTKB|Q8IBV2 [details] [associations]
symbol:PF07_0057 "Transcription elongation factor s-II,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0008023 "transcription elongation factor complex"
evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 130 (50.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 44/180 (24%), Positives = 83/180 (46%)
Query: 134 NDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCR---SNG 190
ND R+ ++ L+ A S + I+ K D + +E +Y+ + S
Sbjct: 227 NDMHRDKAKQFLFKAFVVGSSDNL-LYFIEKKKLND---IIYNIECELYKVYMEKRSSQK 282
Query: 191 MYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGA 250
Y + + + FN+SD +N +F KV + + + M++++MASD+ + ++
Sbjct: 283 EYNMQLKSIKFNLSDKKNPNFNEKVYSEFISSKALATMNSQDMASDEKKNERKKCLQESL 342
Query: 251 LVTGHIFPVG--LSRKIIVSDIYECGRC-GHNKISYQHSSILDDYNLTRHVTCLNCNQYW 307
L + V L +K + ++C +C G++ I +Q + D +T VTCL CN W
Sbjct: 343 LACQSDWDVKNILLKKSRKGE-FQCFKCKGYDTIYHQLQTRSSDEPMTTFVTCLKCNNRW 401
Score = 67 (28.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 19/99 (19%), Positives = 51/99 (51%)
Query: 23 EGVVEEARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWRDM 82
E +++E I L+ +K+ I +L T++ + + K ++ +Q L+ DL+ W++
Sbjct: 37 EDIIKEV--ITNLNLLKDVEINKDILRITKIGITVNKLTKINNELVQNLSKDLVEKWKN- 93
Query: 83 CWDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGN 121
+ +E ++ K ++++ K E++ ++ ++ N
Sbjct: 94 ---IAKMEKLSSLKNYEMMKKRKSEKIEMANDKINNDNN 129
>UNIPROTKB|Q92576 [details] [associations]
symbol:PHF3 "PHD finger protein 3" species:9606 "Homo
sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=NAS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0007275
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
eggNOG:NOG255142 EMBL:AL050329 EMBL:AL354719 EMBL:AF091622
EMBL:D87685 EMBL:BX648268 EMBL:BC113650 EMBL:BC113652
IPI:IPI00170770 IPI:IPI00847550 RefSeq:NP_055968.1
UniGene:Hs.348921 PDB:2DME PDBsum:2DME ProteinModelPortal:Q92576
SMR:Q92576 IntAct:Q92576 STRING:Q92576 PhosphoSite:Q92576
DMDM:34098662 PaxDb:Q92576 PeptideAtlas:Q92576 PRIDE:Q92576
Ensembl:ENST00000262043 Ensembl:ENST00000393387 GeneID:23469
KEGG:hsa:23469 UCSC:uc003pen.2 CTD:23469 GeneCards:GC06P064403
HGNC:HGNC:8921 HPA:HPA024676 HPA:HPA025763 MIM:607789
neXtProt:NX_Q92576 PharmGKB:PA33261 HOVERGEN:HBG039623
InParanoid:Q92576 OMA:KQNMTTD PhylomeDB:Q92576 ChiTaRS:PHF3
EvolutionaryTrace:Q92576 GenomeRNAi:23469 NextBio:45797
ArrayExpress:Q92576 Bgee:Q92576 CleanEx:HS_PHF3
Genevestigator:Q92576 GermOnline:ENSG00000118482 Uniprot:Q92576
Length = 2039
Score = 162 (62.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 45/140 (32%), Positives = 72/140 (51%)
Query: 102 ENVKVEEVTNGEERRHDSGNVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVT 161
+ +K ++V G H + + K S D R+ VR L D L K ++ KV
Sbjct: 899 QEMKKKKVEKGVLNVHPAASASKPSA-------DQIRQSVRHSLKDILMKRLTDSNLKVP 951
Query: 162 IDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVK 221
+ KA +VA +E ++ + ++ YK KYR L+FN+ DP+N +KVL G V
Sbjct: 952 EE--KAA---KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVT 1006
Query: 222 PETIINMSAKEMASDKIQLW 241
P+ +I MS +E+AS ++ W
Sbjct: 1007 PDHLIRMSPEELASKELAAW 1026
>UNIPROTKB|E2R727 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 CTD:23469 OMA:KQNMTTD
EMBL:AAEX03008426 RefSeq:XP_538985.2 Ensembl:ENSCAFT00000003930
GeneID:481864 KEGG:cfa:481864 NextBio:20856589 Uniprot:E2R727
Length = 2043
Score = 161 (61.7 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 43/131 (32%), Positives = 70/131 (53%)
Query: 113 EERRHDSG--NVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDP 170
++++ + G NV + S D R+ VR L D L + E+ KV + KA
Sbjct: 903 KKKKSEKGIPNVHVPTTSTSKPSADQIRQSVRHSLKDILMRRLTESNLKVPEE--KAA-- 958
Query: 171 IQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSA 230
+VA +E ++ + ++ YK KYR L+FN+ DP+N +KVL G V P+ +I MS
Sbjct: 959 -KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSP 1017
Query: 231 KEMASDKIQLW 241
+E+AS ++ W
Sbjct: 1018 EELASKELAAW 1028
>UNIPROTKB|H0YF46 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
SUPFAM:SSF46942 HGNC:HGNC:26338 ChiTaRS:SPOCD1
Ensembl:ENST00000528579 Uniprot:H0YF46
Length = 255
Score = 147 (56.8 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 173 VAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKE 232
+A +E+A+++ +NG YK KYR LLFN+ DP N D KV+ G V P ++ MS+ +
Sbjct: 56 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 115
Query: 233 MASDKIQLWNHHLDKDG 249
+A ++ W +K G
Sbjct: 116 LAPQELARWRDQEEKRG 132
>UNIPROTKB|G5E5M1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:DAAA02024858
EMBL:DAAA02024859 UniGene:Bt.20639 Ensembl:ENSBTAT00000025476
NextBio:20873627 Uniprot:G5E5M1
Length = 2025
Score = 159 (61.0 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 39/107 (36%), Positives = 60/107 (56%)
Query: 135 DSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKF 194
D R+ VR L D L K ++ KV + KA +VA +E ++ + ++ YK
Sbjct: 917 DQIRQSVRHSLKDILMKRLTDSNLKVPEE--KAA---KVATKIEKELFSFFRDTDAKYKN 971
Query: 195 KYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLW 241
KYR L+FN+ DP+N +KVL G V P+ +I MS +E+AS ++ W
Sbjct: 972 KYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAW 1018
>RGD|1304925 [details] [associations]
symbol:Phf3 "PHD finger protein 3" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
RGD:1304925 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:CH473965 GeneTree:ENSGT00530000063844 CTD:23469
IPI:IPI00366920 RefSeq:NP_001102261.1 UniGene:Rn.21075
Ensembl:ENSRNOT00000015638 GeneID:363210 KEGG:rno:363210
UCSC:RGD:1304925 OrthoDB:EOG4M91RC NextBio:682838 Uniprot:D3ZKI5
Length = 2020
Score = 156 (60.0 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 39/121 (32%), Positives = 65/121 (53%)
Query: 121 NVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESA 180
NV + + + D R+ VR L D L K ++ K+ + K+ +VA +E
Sbjct: 894 NVHPPAAAAIKPSADQIRQSVRHSLKDILMKRLTDSNLKIPEE--KSA---KVATKIEKE 948
Query: 181 MYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQL 240
++ + ++ YK KYR L+FN+ DP+N +KVL G V P+ +I MS +E+AS ++
Sbjct: 949 LFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAA 1008
Query: 241 W 241
W
Sbjct: 1009 W 1009
>UNIPROTKB|E2R336 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010923 "negative regulation of phosphatase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 Ensembl:ENSCAFT00000017200
Uniprot:E2R336
Length = 718
Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 35/110 (31%), Positives = 61/110 (55%)
Query: 141 VREKLYDALSKVSDEAADKVTIDLVKACDPIQ-VAILVESAMYEKWCRSNGMYKFKYRCL 199
VR + A+ +V ++ DLV + + ++ +A +E+A++ ++ YK KYR L
Sbjct: 104 VRNTVVHAMQEVLRSRLQELP-DLVLSEEAVEGIAAGIETALFNLTQTTSCRYKTKYRSL 162
Query: 200 LFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDG 249
LFN+ DP N D KV+ G V PE ++ MS+ ++A ++ W +K G
Sbjct: 163 LFNLRDPRNPDLFLKVVRGDVTPEDLVQMSSIQLAPQELACWRDQEEKRG 212
>ZFIN|ZDB-GENE-090313-207 [details] [associations]
symbol:phf3 "PHD finger protein 3" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
ZFIN:ZDB-GENE-090313-207 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 GeneTree:ENSGT00530000063844 EMBL:BX005106
IPI:IPI00486005 UniGene:Dr.75445 Ensembl:ENSDART00000043440
Ensembl:ENSDART00000100352 HOGENOM:HOG000213981 OMA:CENNDET
NextBio:20880263 Uniprot:B8A483
Length = 1691
Score = 155 (59.6 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 39/135 (28%), Positives = 65/135 (48%)
Query: 107 EEVTNGEERRHDSGNVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVK 166
+ G +H++ V +S R VR+ L + L K S E+ K++ D
Sbjct: 725 DSAQKGPNVKHETKKVKISPVSSKKPSTGHIRRSVRDSLEEILLKRSKESDLKISSDR-- 782
Query: 167 ACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETII 226
P +VA E ++ + + YK KYR L FN+ D +N ++VL G V P ++
Sbjct: 783 ---PAEVARRTEKELFALFQGVDSKYKNKYRSLTFNLKDAKNNVLFKRVLKGEVSPADLV 839
Query: 227 NMSAKEMASDKIQLW 241
M+A+E+AS ++ W
Sbjct: 840 RMTAEELASKELAAW 854
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 146 (56.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 45/168 (26%), Positives = 80/168 (47%)
Query: 141 VREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLL 200
VR+K + LS +A D D CD ++A +E + E+ ++ Y+ + R +
Sbjct: 187 VRDKCVEMLSAAL-KAEDDYK-DYGVNCD--KMASEIEDHILEELKSTDMKYRNRVRSRI 242
Query: 201 FNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVG 260
N+ DP N RR VL G + I M+A+EMASD+++ + + ++ A+ + G
Sbjct: 243 SNLKDPRNPSLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQE-AIREHQMAKTG 301
Query: 261 LSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+ +D+++C +C +Y Q + D +T V C C W
Sbjct: 302 GT----TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
>UNIPROTKB|Q6ZMY3 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IDA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 GO:GO:0010923
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
PROSITE:PS50917 EMBL:AK058077 EMBL:AK091016 EMBL:AK096192
EMBL:AK097227 EMBL:AK131447 EMBL:BC039870 EMBL:BC114430
IPI:IPI00478771 IPI:IPI00827924 IPI:IPI00845378 IPI:IPI00845481
IPI:IPI00845517 RefSeq:NP_653170.3 UniGene:Hs.62604
ProteinModelPortal:Q6ZMY3 SMR:Q6ZMY3 IntAct:Q6ZMY3 DMDM:74749560
PaxDb:Q6ZMY3 PRIDE:Q6ZMY3 Ensembl:ENST00000257100
Ensembl:ENST00000360482 Ensembl:ENST00000533231 GeneID:90853
KEGG:hsa:90853 UCSC:uc001bts.1 UCSC:uc001btu.3 UCSC:uc001btv.3
UCSC:uc001btw.1 CTD:90853 GeneCards:GC01M032256 H-InvDB:HIX0018138
HGNC:HGNC:26338 HPA:HPA031713 neXtProt:NX_Q6ZMY3
PharmGKB:PA134930231 eggNOG:NOG280980 InParanoid:Q6ZMY3 OMA:PKDTGSG
PhylomeDB:Q6ZMY3 ChiTaRS:SPOCD1 GenomeRNAi:90853 NextBio:77002
ArrayExpress:Q6ZMY3 Bgee:Q6ZMY3 CleanEx:HS_SPOCD1
Genevestigator:Q6ZMY3 Uniprot:Q6ZMY3
Length = 1216
Score = 153 (58.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 38/136 (27%), Positives = 68/136 (50%)
Query: 114 ERRHDSGNVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQV 173
E+ DS + ++ S I + ++E L+ L ++ D + ++ +
Sbjct: 589 EQPEDSAQLQQEKPSLYIGVRGTVVRSMQEVLWTRLRELPDPVLSEEVVE--------GI 640
Query: 174 AILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEM 233
A +E+A+++ +NG YK KYR LLFN+ DP N D KV+ G V P ++ MS+ ++
Sbjct: 641 AAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQL 700
Query: 234 ASDKIQLWNHHLDKDG 249
A ++ W +K G
Sbjct: 701 APQELARWRDQEEKRG 716
>UNIPROTKB|E1BVY1 [details] [associations]
symbol:PHF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 OMA:KQNMTTD EMBL:AADN02002654
EMBL:AADN02002655 IPI:IPI00602717 Ensembl:ENSGALT00000026230
Uniprot:E1BVY1
Length = 2050
Score = 155 (59.6 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 47/160 (29%), Positives = 79/160 (49%)
Query: 87 EDVEYVAVTKKAKLVENVKVEEVTN--GEERRHDSGNVPKKSISC-MIK--CNDSFREIV 141
E + V + K+ + E ++++ N G NVP S I+ S +EI+
Sbjct: 873 ESLSVVEKSTKSGVHEKQEIKKKKNEKGPTSATHLPNVPASKPSADQIRHSVKQSLKEIL 932
Query: 142 REKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLF 201
++L D+ K+ +E A KV A +E ++ + ++ YK KYR L+F
Sbjct: 933 MKRLTDSSLKIPEERAAKV-------------ATRIERELFSFFRDTDSKYKNKYRSLMF 979
Query: 202 NISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLW 241
N+ DP+N +KVL G V P+ +I MS +E+AS ++ W
Sbjct: 980 NLKDPKNNILFKKVLKGEVTPDHLIKMSPEELASKELAAW 1019
>UNIPROTKB|E9PPM7 [details] [associations]
symbol:SPOCD1 "SPOC domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 GO:GO:0006351 EMBL:AL354919 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 HGNC:HGNC:26338
ChiTaRS:SPOCD1 IPI:IPI00977290 ProteinModelPortal:E9PPM7 SMR:E9PPM7
Ensembl:ENST00000452755 ArrayExpress:E9PPM7 Bgee:E9PPM7
Uniprot:E9PPM7
Length = 639
Score = 147 (56.8 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 173 VAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKE 232
+A +E+A+++ +NG YK KYR LLFN+ DP N D KV+ G V P ++ MS+ +
Sbjct: 77 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 136
Query: 233 MASDKIQLWNHHLDKDG 249
+A ++ W +K G
Sbjct: 137 LAPQELARWRDQEEKRG 153
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 140 (54.3 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 60/290 (20%), Positives = 119/290 (41%)
Query: 30 RCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQ-KIQKLAYDLISSWRDMCWDVED 88
+ +D L ++ +I +L T++ + + K ++ LA LI +W+
Sbjct: 26 QALDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAP 85
Query: 89 VEYVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSISCMIK-------CNDSFREIV 141
+ K N + T+ + K S S K + S
Sbjct: 86 TTPNNSSAKEGSSNNSSASKSTSAAKSSSSISGKDKSSSSSSSKDKEKKGSTSSSQTSFP 145
Query: 142 REKLYDALS-KVSDEAADKVTI-DLVKAC-DPIQVAILVESAMYEKWCRSNGMYKFKYRC 198
+ DA+ K + A + I ++ + C +P ++A +E A+Y ++ ++ YK + R
Sbjct: 146 SGGMTDAVRIKCREMLATALKIGEVPEGCGEPEEMAAELEDAIYSEFNNTDMKYKNRIRS 205
Query: 199 LLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFP 258
+ N+ DP+N R + G V + + M+ +EMASD+++ K+ A+ +
Sbjct: 206 RVANLKDPKNPGLRGNFMCGAVTAKQLAKMTPEEMASDEMKKLREKFVKE-AINDAQLAT 264
Query: 259 VGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
V ++ +D+ +C +C +Y Q + D +T V C C W
Sbjct: 265 VQGTK----TDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 310
>UNIPROTKB|F1SV96 [details] [associations]
symbol:SPOCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:CU861549 Ensembl:ENSSSCT00000004001 Uniprot:F1SV96
Length = 1168
Score = 147 (56.8 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 30/88 (34%), Positives = 53/88 (60%)
Query: 163 DLVKACDPIQ-VAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVK 221
DLV + ++ +A +E+A+++ +NG Y+ KYR LLFN+ DP N D KV+ G V
Sbjct: 564 DLVLSEGAVEGLAAGIEAALFDLTHATNGHYRTKYRSLLFNLRDPRNPDLFLKVIHGDVT 623
Query: 222 PETIINMSAKEMASDKIQLWNHHLDKDG 249
P+ ++ M++ ++A ++ W +K G
Sbjct: 624 PQGLVRMNSVQLAPQELARWRDQEEKRG 651
>UNIPROTKB|F1MG39 [details] [associations]
symbol:F1MG39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 GO:GO:0010923 Gene3D:1.10.472.30 InterPro:IPR012921
Pfam:PF07744 SUPFAM:SSF46942 GeneTree:ENSGT00530000063844
OMA:PKDTGSG EMBL:DAAA02006249 EMBL:DAAA02006250 IPI:IPI00693396
Ensembl:ENSBTAT00000055584 Uniprot:F1MG39
Length = 1150
Score = 145 (56.1 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 163 DLVKACDPIQ-VAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVK 221
DLV + ++ +A +E+A++ +NG YK KYR LLFN+ DP N + KV+ G +
Sbjct: 563 DLVLSEKVVEGIAAGIEAALFNLTQATNGRYKTKYRSLLFNLRDPRNPELFLKVVHGDIT 622
Query: 222 PETIINMSAKEMASDKIQLWNHHLDKDG 249
P ++ MS+ ++A ++ W +K G
Sbjct: 623 PHGLVRMSSVQLAPQELARWRDQEEKRG 650
>DICTYBASE|DDB_G0278241 [details] [associations]
symbol:tcea1 "RNA polymerase II elongation factor"
species:44689 "Dictyostelium discoideum" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 dictyBase:DDB_G0278241 GO:GO:0005654
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000023 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 KO:K03145
RefSeq:XP_642233.1 HSSP:P23193 ProteinModelPortal:Q54YG9 SMR:Q54YG9
STRING:Q54YG9 EnsemblProtists:DDB0216299 GeneID:8621441
KEGG:ddi:DDB_G0278241 OMA:LEIWKKV Uniprot:Q54YG9
Length = 319
Score = 104 (41.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 40/165 (24%), Positives = 69/165 (41%)
Query: 147 DALSKVSDEAADKVTIDLVKACDPIQ-VAILVESAMYEKWCRSNGMYKFKYRCLLFNISD 205
D +K + +T D + P + +A+ +E+ MY+ + + YK K R FN+
Sbjct: 159 DLRNKTIQLFVEALTTDNDETMSPPEDIAVEIEAEMYDIYRGVSKEYKEKLRSFKFNLK- 217
Query: 206 PENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSRKI 265
+N R +L + +M MASD ++ LDK + +G + +
Sbjct: 218 -KNDILRLSLLNRQISVAKFCSMDIYSMASDDLKEERKKLDKFNTEAS----MLGQNNEA 272
Query: 266 IVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCL--NCNQYW 307
+D ++CG+C K +Y Q + D T V C C W
Sbjct: 273 -TTDQFQCGKCKQRKCTYTQLQTRSADEPPTTFVKCCVKGCGNRW 316
Score = 73 (30.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 26/107 (24%), Positives = 47/107 (43%)
Query: 22 KEGVVEEARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWRD 81
K+G ++A ++ L KN IT LL ST + + + + H I + +LI W+
Sbjct: 16 KDGEFDKA--LECLKNAKNFKITKDLLKSTDIGKSVGKLRAHKDIGISSQSKELIDKWK- 72
Query: 82 MCWDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSIS 128
+D+E + T + + T + S ++ +KSIS
Sbjct: 73 -----QDIEGTSATTTSSSSSSSSSTTSTTTTKTASPSESLKRKSIS 114
>UNIPROTKB|I3L6H4 [details] [associations]
symbol:I3L6H4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 GeneTree:ENSGT00390000017794
Ensembl:ENSSSCT00000029692 Uniprot:I3L6H4
Length = 111
Score = 115 (45.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 28/108 (25%), Positives = 56/108 (51%)
Query: 176 LVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMAS 235
L S +Y++ ++ Y+ + R + N+ DP N RR VL G + I M+A+EMAS
Sbjct: 6 LTMSHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMAS 65
Query: 236 DKIQLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISY 283
D+++ + + ++ A+ + G + +D+++C +C +Y
Sbjct: 66 DELRELRNAMTQE-AIREHQMAKTGGT----TTDLFQCSKCKKKNCTY 108
>UNIPROTKB|E1BCR2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:DAAA02036239 IPI:IPI00971510 RefSeq:XP_003586878.1
UniGene:Bt.14503 Ensembl:ENSBTAT00000007879 GeneID:519826
KEGG:bta:519826 Uniprot:E1BCR2
Length = 2196
Score = 144 (55.7 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 34/116 (29%), Positives = 62/116 (53%)
Query: 134 NDSFREIVREKLYDALSK-VSDEAADKVTIDLVKACDPI-QVAILVESAMYEKWCRSNGM 191
N R+ +R L + L K V+D +D DL+ + + ++A+L+E M+ + ++
Sbjct: 669 NSQIRQNIRRSLKEILWKRVND--SD----DLIMTENEVGKIALLIEKEMFNLFRVTDNR 722
Query: 192 YKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDK 247
YK KYR L+FN+ DP+NQ +VL + ++ M +E+ S ++ +W K
Sbjct: 723 YKSKYRSLMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSVWRERTTK 778
>UNIPROTKB|F1NFF0 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0008270 GO:GO:0006351
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:AADN02019222 EMBL:AADN02019223
IPI:IPI00821338 Ensembl:ENSGALT00000039659 ArrayExpress:F1NFF0
Uniprot:F1NFF0
Length = 2253
Score = 144 (55.7 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 33/123 (26%), Positives = 63/123 (51%)
Query: 119 SGNVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVE 178
S V +I + N R+ +R L + L K +++ D V + + +VA+ +E
Sbjct: 673 SSQVKVSAIPIQSQPNSQIRQNIRRSLKEILWKRVNDSDDLVMTE----SEVGKVALNIE 728
Query: 179 SAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKI 238
M+ + ++ YK KYR ++FN+ DP+NQ +VL G + ++ M +E+ S ++
Sbjct: 729 KEMFNLFHVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLSKEL 788
Query: 239 QLW 241
+W
Sbjct: 789 SVW 791
>UNIPROTKB|F1NGH5 [details] [associations]
symbol:Gga.41084 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003618
InterPro:IPR017890 InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500
PROSITE:PS50016 PROSITE:PS51321 SMART:SM00249 SMART:SM00510
GO:GO:0005634 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AADN02019222 EMBL:AADN02019223 IPI:IPI00577866
Ensembl:ENSGALT00000009066 ArrayExpress:F1NGH5 Uniprot:F1NGH5
Length = 2287
Score = 144 (55.7 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 33/123 (26%), Positives = 63/123 (51%)
Query: 119 SGNVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVE 178
S V +I + N R+ +R L + L K +++ D V + + +VA+ +E
Sbjct: 673 SSQVKVSAIPIQSQPNSQIRQNIRRSLKEILWKRVNDSDDLVMTE----SEVGKVALNIE 728
Query: 179 SAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKI 238
M+ + ++ YK KYR ++FN+ DP+NQ +VL G + ++ M +E+ S ++
Sbjct: 729 KEMFNLFHVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLHGEISLSKLVRMKPEELLSKEL 788
Query: 239 QLW 241
+W
Sbjct: 789 SVW 791
>ZFIN|ZDB-GENE-030131-6117 [details] [associations]
symbol:dido1 "death inducer-obliterator 1"
species:7955 "Danio rerio" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 ZFIN:ZDB-GENE-030131-6117 GO:GO:0005634
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 EMBL:BX296530 EMBL:BX005175
IPI:IPI00971682 Ensembl:ENSDART00000110882 ArrayExpress:F1QQA3
Bgee:F1QQA3 Uniprot:F1QQA3
Length = 2779
Score = 143 (55.4 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 39/130 (30%), Positives = 67/130 (51%)
Query: 134 NDSFREIVREKLYDALSK-VSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMY 192
N+ R +R L D L K VSD +D +T+ + ++A+ +E M+ ++ Y
Sbjct: 758 NNQMRSNIRRSLTDILYKRVSD--SDDLTMSENEVG---RLAVGIEKEMFNLCMNTDNKY 812
Query: 193 KFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHH------LD 246
K KYR L+FN+ DP+N+ +V+ G + P ++ +S +E+ S ++ W LD
Sbjct: 813 KNKYRSLMFNLKDPKNKGLFYRVVGGEISPFRLVRLSPEELLSKELSDWRKSESSEKSLD 872
Query: 247 KDGALVTGHI 256
K G +G I
Sbjct: 873 KSGRSHSGQI 882
>TAIR|locus:2179419 [details] [associations]
symbol:AT5G25520 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR003618 Pfam:PF07500
PROSITE:PS51321 EMBL:CP002688 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
IPI:IPI00526909 RefSeq:NP_974833.1 UniGene:At.43475
ProteinModelPortal:F4JWU1 SMR:F4JWU1 PRIDE:F4JWU1
EnsemblPlants:AT5G25520.2 GeneID:832627 KEGG:ath:AT5G25520
OMA:HEHEESP PhylomeDB:F4JWU1 Uniprot:F4JWU1
Length = 997
Score = 137 (53.3 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 39/130 (30%), Positives = 66/130 (50%)
Query: 118 DSGNVPKKSISCMIKCND-SFREIV---REKLY-DALSKVSDEAADKVTIDLVKAC-DPI 171
+ +V K + C+D F + + E L + LS V + +D + K+ DP
Sbjct: 302 NQSDVQKTQFDEVFPCDDVRFSDSIFTGDELLQGNGLSWVLEPVSDFGENETQKSFEDPE 361
Query: 172 QVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAK 231
+A +E +++ + N YK K R LLFN+ D N + R V+ G + PE + NM+A+
Sbjct: 362 LLASKIELELFKLFGGVNKKYKEKGRSLLFNLKDKNNPELRESVMSGKISPERLCNMTAE 421
Query: 232 EMASDKIQLW 241
E+AS ++ W
Sbjct: 422 ELASKELSQW 431
>TAIR|locus:2050311 [details] [associations]
symbol:AT2G25640 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 InterPro:IPR017890 Pfam:PF07500
PROSITE:PS51321 SMART:SM00510 GO:GO:0005634 EMBL:CP002685
GO:GO:0008270 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 IPI:IPI00531004
RefSeq:NP_180135.2 UniGene:At.38993 ProteinModelPortal:F4ISL5
SMR:F4ISL5 PRIDE:F4ISL5 EnsemblPlants:AT2G25640.1 GeneID:817105
KEGG:ath:AT2G25640 OMA:IGAMAND Uniprot:F4ISL5
Length = 745
Score = 131 (51.2 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 169 DPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINM 228
DP +A +E+ +++ + N YK K R LLFN+ D N R KV+ G + E + +M
Sbjct: 315 DPQVLAFEIETELFKLFGGVNKKYKEKGRSLLFNLKDKSNPKLREKVMYGEIAAERLCSM 374
Query: 229 SAKEMASDKIQLW 241
SA+E+AS ++ W
Sbjct: 375 SAEELASKELAEW 387
>TAIR|locus:2144211 [details] [associations]
symbol:AT5G11430 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
EMBL:CP002688 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942 UniGene:At.69010
IPI:IPI00547412 RefSeq:NP_196704.2 UniGene:At.5125 UniGene:At.73156
ProteinModelPortal:F4JXV3 SMR:F4JXV3 PRIDE:F4JXV3
EnsemblPlants:AT5G11430.1 GeneID:831014 KEGG:ath:AT5G11430
OMA:VITQENT Uniprot:F4JXV3
Length = 873
Score = 117 (46.2 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 169 DPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINM 228
DP +A +E +Y+ + N Y+ + R LLFN+ D N + R +V+ + E + +M
Sbjct: 260 DPKLLASKIEMELYKLFGGVNKKYRERGRSLLFNLKDKNNPELRERVMSEEISAERLCSM 319
Query: 229 SAKEMASDKIQLW 241
+A+E+AS ++ W
Sbjct: 320 TAEELASKELSQW 332
Score = 58 (25.5 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 123 PKKSISCMIKCNDSFREIVREKLYDALSKVS-DEAADK 159
P++S+ M + N+S R +RE L AL+ V D+ + K
Sbjct: 97 PQRSVKAMEEVNESVRSKMRESLASALALVKKDDDSPK 134
>MGI|MGI:1344352 [details] [associations]
symbol:Dido1 "death inducer-obliterator 1" species:10090
"Mus musculus" [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 MGI:MGI:1344352 GO:GO:0005737
GO:GO:0006915 GO:GO:0005654 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 CTD:11083 eggNOG:NOG255142 HOVERGEN:HBG060199
OMA:PNRMCAD EMBL:AJ238332 EMBL:AY425951 EMBL:AY425952 EMBL:AK129117
EMBL:AK032843 EMBL:AK042474 EMBL:AK044919 EMBL:AL732560
EMBL:BC029110 EMBL:BC044755 EMBL:BC096662 EMBL:BC138712
EMBL:BC138713 IPI:IPI00227469 IPI:IPI00453851 IPI:IPI00828403
RefSeq:NP_035935.2 RefSeq:NP_780760.2 RefSeq:NP_808520.2
UniGene:Mm.253836 UniGene:Mm.490825 PDB:1WEM PDBsum:1WEM
ProteinModelPortal:Q8C9B9 SMR:Q8C9B9 STRING:Q8C9B9
PhosphoSite:Q8C9B9 PaxDb:Q8C9B9 PRIDE:Q8C9B9
Ensembl:ENSMUST00000037764 Ensembl:ENSMUST00000087517
Ensembl:ENSMUST00000103055 Ensembl:ENSMUST00000103056
Ensembl:ENSMUST00000103057 Ensembl:ENSMUST00000130986 GeneID:23856
KEGG:mmu:23856 UCSC:uc008ojq.1 UCSC:uc008ojr.1 UCSC:uc008oju.1
GeneTree:ENSGT00530000063844 InParanoid:Q8C9B9
EvolutionaryTrace:Q8C9B9 NextBio:303557 Bgee:Q8C9B9
CleanEx:MM_DIDO1 CleanEx:MM_DIO1 Genevestigator:Q8C9B9
Uniprot:Q8C9B9
Length = 2256
Score = 133 (51.9 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 31/110 (28%), Positives = 60/110 (54%)
Query: 134 NDSFREIVREKLYDALSK-VSDEAADKVTIDLVKACDPI-QVAILVESAMYEKWCRSNGM 191
N R+ +R L + L K V+D +D DL+ + + ++A+ +E M+ + ++
Sbjct: 664 NSQIRQNIRRSLKEILWKRVND--SD----DLIMTENEVGKIALHIEKEMFNLFQVTDNR 717
Query: 192 YKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLW 241
YK KYR ++FN+ DP+NQ +VL + ++ M +E+ S ++ +W
Sbjct: 718 YKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSMW 767
>UNIPROTKB|F1PLS2 [details] [associations]
symbol:DIDO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR017890 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016 PROSITE:PS51321
SMART:SM00249 SMART:SM00510 GO:GO:0005634 GO:GO:0046872
GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 OMA:PNRMCAD GeneTree:ENSGT00530000063844
EMBL:AAEX03014133 Ensembl:ENSCAFT00000020204 Uniprot:F1PLS2
Length = 1518
Score = 130 (50.8 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 28/114 (24%), Positives = 57/114 (50%)
Query: 134 NDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYK 193
N R+ +R L + L K +++ D + + + ++A+ +E M+ + ++ YK
Sbjct: 676 NSQIRQNIRRSLKEILWKRVNDSDDLIMTE----SEVGKIALHIEKEMFNLFQVTDNRYK 731
Query: 194 FKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDK 247
KYR ++FN+ DP+NQ +VL + ++ M +E+ S ++ W K
Sbjct: 732 SKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPEELVSKELSTWRERPTK 785
>RGD|1560989 [details] [associations]
symbol:Spocd1 "SPOC domain containing 1" species:10116 "Rattus
norvegicus" [GO:0010923 "negative regulation of phosphatase
activity" evidence=ISO] REFSEQ:XM_003750045 Ncbi:XP_003750093
Length = 768
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 38/138 (27%), Positives = 70/138 (50%)
Query: 105 KVEEVTNGEERRHDSGNVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDL 164
+ E V ++R D G+VP+ ++ + R V + + L + E + ++L
Sbjct: 129 EAENVQPLQQRAEDPGDVPRAGEREIMPLDVGVRSTVVRAMQEVLWTRTQELPN---LEL 185
Query: 165 VKACDPIQ-VAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPE 223
+ D ++ +A +E+A++ +N YK KYR LLFN+ DP N D KV V P+
Sbjct: 186 RE--DEVEGIAEGIEAALFHLTQDTNLRYKSKYRNLLFNLRDPRN-DLFLKVAHCDVTPK 242
Query: 224 TIINMSAKEMASDKIQLW 241
++ MS+ ++A ++ W
Sbjct: 243 DLVQMSSIQLAPKELSRW 260
>UNIPROTKB|F1LWI4 [details] [associations]
symbol:F1LWI4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 IPI:IPI00781224
Ensembl:ENSRNOT00000056304 Uniprot:F1LWI4
Length = 190
Score = 112 (44.5 bits), Expect = 0.00018, P = 0.00018
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 169 DPIQ-VAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPEN--QDFRRKVLLGHVKPETI 225
D ++ +A +E+A++ +N YK KYR LLFN+ DP N QD KV V P+ +
Sbjct: 14 DEVEGIAEGIEAALFHLTQDTNLRYKSKYRNLLFNLRDPRNPPQDLFLKVAHCDVTPKDL 73
Query: 226 INMSAKEMASDKIQLW 241
+ MS+ ++A ++ W
Sbjct: 74 VQMSSIQLAPKELSRW 89
>UNIPROTKB|E1BRR3 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
CTD:170082 OMA:LKKKAKC EMBL:AADN02011353 IPI:IPI00596200
RefSeq:XP_416834.1 UniGene:Gga.12219 ProteinModelPortal:E1BRR3
Ensembl:ENSGALT00000026765 GeneID:418636 KEGG:gga:418636
NextBio:20821792 Uniprot:E1BRR3
Length = 359
Score = 87 (35.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 26/106 (24%), Positives = 53/106 (50%)
Query: 135 DSFREIVREKLYDALSK-VSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYK 193
D R + R K D L K ++ A DK D ++++ +E ++ C+++ YK
Sbjct: 176 DHMRAL-RCKCTDLLYKALTGSAKDKEETDKW-----LELSKEIEEHVFALHCKNDKKYK 229
Query: 194 FKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQ 239
R + N+ +P++ + + + G + P+ M+ EMASD+++
Sbjct: 230 NCIRSKISNLKNPKSCNLKHNLFSGTLSPKAFAEMTVMEMASDELK 275
Score = 73 (30.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 33 DALDQIKNSSITYQLLVSTQVIRHLLPMLKH-PSQKIQKLAYDLISSWRDMCWDVEDVEY 91
D L ++++ S+T + L T+V + + +LK PS +++K A L+S W+ + + ++
Sbjct: 28 DHLKELEDVSMTVEYLQGTEVAKVVYRILKSCPSAELKKKAKQLLSRWKAL-YKNNRLQS 86
Query: 92 VAVTKKAKLVENVKVEEVT-NGEE 114
V V K + + E + GE+
Sbjct: 87 VQVKKSVSVCVSEATEHLEIPGEQ 110
>UNIPROTKB|Q9BTC0 [details] [associations]
symbol:DIDO1 "Death-inducer obliterator 1" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001965 InterPro:IPR003618 InterPro:IPR017890
InterPro:IPR019787 Pfam:PF00628 Pfam:PF07500 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00510 GO:GO:0005634
GO:GO:0005737 EMBL:CH471077 GO:GO:0006915 Reactome:REACT_115566
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Reactome:REACT_111183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
EMBL:AL035669 EMBL:AY481571 EMBL:AY481572 EMBL:AB002331
EMBL:AK002127 EMBL:AL117379 EMBL:BC000770 EMBL:BC004237
EMBL:BC012757 EMBL:BC014489 EMBL:BC137177 EMBL:AL133063
IPI:IPI00183350 IPI:IPI00249982 IPI:IPI00249984 IPI:IPI00619921
RefSeq:NP_001180298.1 RefSeq:NP_001180299.1 RefSeq:NP_071388.2
RefSeq:NP_149072.2 RefSeq:NP_542986.1 RefSeq:NP_542987.2
UniGene:Hs.517172 ProteinModelPortal:Q9BTC0 SMR:Q9BTC0
IntAct:Q9BTC0 STRING:Q9BTC0 PhosphoSite:Q9BTC0 DMDM:116241332
PaxDb:Q9BTC0 PeptideAtlas:Q9BTC0 PRIDE:Q9BTC0 DNASU:11083
Ensembl:ENST00000266070 Ensembl:ENST00000266071
Ensembl:ENST00000354665 Ensembl:ENST00000370366
Ensembl:ENST00000370368 Ensembl:ENST00000370371
Ensembl:ENST00000395335 Ensembl:ENST00000395340
Ensembl:ENST00000395343 GeneID:11083 KEGG:hsa:11083 UCSC:uc002ydr.2
UCSC:uc002ydt.2 UCSC:uc002ydv.2 UCSC:uc011aao.1 CTD:11083
GeneCards:GC20M061510 HGNC:HGNC:2680 HPA:CAB004374 MIM:604140
neXtProt:NX_Q9BTC0 PharmGKB:PA27147 eggNOG:NOG255142
HOVERGEN:HBG060199 InParanoid:Q9BTC0 OMA:PNRMCAD OrthoDB:EOG41ZFCM
ChiTaRS:DIDO1 GenomeRNAi:11083 NextBio:42138 Bgee:Q9BTC0
Genevestigator:Q9BTC0 GermOnline:ENSG00000101191 Uniprot:Q9BTC0
Length = 2240
Score = 127 (49.8 bits), Expect = 0.00022, P = 0.00022
Identities = 30/110 (27%), Positives = 59/110 (53%)
Query: 134 NDSFREIVREKLYDALSK-VSDEAADKVTIDLVKACDPI-QVAILVESAMYEKWCRSNGM 191
N R+ +R L + L K V+D +D DL+ + + ++A+ +E M+ + ++
Sbjct: 667 NSQIRQNIRRSLKEILWKRVND--SD----DLIMTENEVGKIALHIEKEMFNLFQVTDNR 720
Query: 192 YKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLW 241
YK KYR ++FN+ DP+NQ +VL + ++ + +E+ S ++ W
Sbjct: 721 YKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTW 770
>UNIPROTKB|F1SRI2 [details] [associations]
symbol:TCEANC "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032784 "regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003618 InterPro:IPR016492 InterPro:IPR017923
Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS51319
PROSITE:PS51321 GO:GO:0005634 GO:GO:0003677 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 GeneTree:ENSGT00390000017794
OMA:LKKKAKC EMBL:CU207339 RefSeq:XP_001927499.1
RefSeq:XP_001927509.1 RefSeq:XP_001927522.1 RefSeq:XP_003134980.1
RefSeq:XP_003134981.1 RefSeq:XP_003134982.1 UniGene:Ssc.1528
ProteinModelPortal:F1SRI2 Ensembl:ENSSSCT00000013261
GeneID:100156439 KEGG:ssc:100156439 Uniprot:F1SRI2
Length = 352
Score = 82 (33.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 41/170 (24%), Positives = 68/170 (40%)
Query: 112 GE-ERRHDSGNVPKKSISCMIKCNDSFREI---VREKLYDALSKVSDEAADKVTIDLVKA 167
GE E H PK + + D R + E LY+AL+ S E + DL
Sbjct: 145 GEPEAAHLRAGDPKSTDQSSGELRDPTRPVRAKCTELLYEALAAFSTE---QPRADLWH- 200
Query: 168 CDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIIN 227
+ A +E ++ ++ YK R + N+ +P N R +L G + P
Sbjct: 201 ----RFAQEIEECIFTLHAKNLKKYKTCIRSKIANLKNPRNSHLRENLLSGIMSPRAFAE 256
Query: 228 MSAKEMASDKI-QLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRC 276
M+ +MAS ++ QL + + + + H P G+ + C RC
Sbjct: 257 MTVMDMASKELKQLRASYTE---SCIQEHSLPQGVEGT--PTKKVRCRRC 301
Score = 76 (31.8 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 35 LDQIKNSSITYQLLVSTQVIRHLLPMLKH-PSQKIQKLAYDLISSWRDMCWDVE 87
L +++ +T +LL T V+R + +LKH P+ ++K A L+S W+ + D +
Sbjct: 30 LTELETLRVTKELLQETVVVRAVYRVLKHCPTAALKKKAKCLLSKWKALYKDAQ 83
>FB|FBgn0082831 [details] [associations]
symbol:pps "protein partner of snf" species:7227 "Drosophila
melanogaster" [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] InterPro:IPR001965
InterPro:IPR003618 InterPro:IPR006576 InterPro:IPR019787
Pfam:PF00628 Pfam:PF07500 Pfam:PF07533 PROSITE:PS50016
PROSITE:PS51321 SMART:SM00249 SMART:SM00592 EMBL:AE014297
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 Gene3D:1.10.472.30
InterPro:IPR012921 Pfam:PF07744 SUPFAM:SSF46942
GeneTree:ENSGT00530000063844 GO:GO:0016817 RefSeq:NP_650193.1
ProteinModelPortal:Q9VG78 SMR:Q9VG78 IntAct:Q9VG78 MINT:MINT-985343
STRING:Q9VG78 PRIDE:Q9VG78 EnsemblMetazoa:FBtr0082586 GeneID:41524
KEGG:dme:Dmel_CG6525 UCSC:CG6525-RA CTD:41524 FlyBase:FBgn0082831
InParanoid:Q9VG78 OrthoDB:EOG4CRJDW PhylomeDB:Q9VG78
GenomeRNAi:41524 NextBio:824247 ArrayExpress:Q9VG78 Bgee:Q9VG78
Uniprot:Q9VG78
Length = 2016
Score = 122 (48.0 bits), Expect = 0.00069, P = 0.00069
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 138 REIVREKLYDAL--SKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGM-YKF 194
R +RE+L + ++ ++E + + T + Q VE M+ + R G YK
Sbjct: 1279 RRSLREQLLARIKEAQAAEENSGQPTTQWPTVLEVDQFVKNVELEMFNSFGRDVGAKYKA 1338
Query: 195 KYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWN-----HHLD 246
KYR L+FNI D +N+ K+ V+P ++ M+ +++AS ++ W H LD
Sbjct: 1339 KYRSLMFNIKDRKNRTLFEKICAKQVEPRQLVRMTPEQLASQELAKWREEENRHQLD 1395
>UNIPROTKB|F1M109 [details] [associations]
symbol:F1M109 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR003618 Pfam:PF07500 PROSITE:PS51321
GO:GO:0006351 Gene3D:1.10.472.30 InterPro:IPR012921 Pfam:PF07744
SUPFAM:SSF46942 IPI:IPI00366810 Ensembl:ENSRNOT00000031410
Uniprot:F1M109
Length = 330
Score = 112 (44.5 bits), Expect = 0.00084, P = 0.00084
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 169 DPIQ-VAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPEN--QDFRRKVLLGHVKPETI 225
D ++ +A +E+A++ +N YK KYR LLFN+ DP N QD KV V P+ +
Sbjct: 16 DEVEGIAEGIEAALFHLTQDTNLRYKSKYRNLLFNLRDPRNPPQDLFLKVAHCDVTPKDL 75
Query: 226 INMSAKEMASDKIQLW 241
+ MS+ ++A ++ W
Sbjct: 76 VQMSSIQLAPKELSRW 91
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 319 309 0.00079 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 74
No. of states in DFA: 619 (66 KB)
Total size of DFA: 248 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.06u 0.14s 26.20t Elapsed: 00:00:01
Total cpu time: 26.07u 0.14s 26.21t Elapsed: 00:00:01
Start: Mon May 20 17:21:12 2013 End: Mon May 20 17:21:13 2013