BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020974
(319 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 136/290 (46%), Gaps = 24/290 (8%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVE 87
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ +
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPS 81
Query: 88 DVEYVAVTKKAKLVEN-----VKVEEVTNGE-ERRHDSGNVPKKSISCMIKC---NDSFR 138
+ + KK + + + E ++G R D N +S + +DS R
Sbjct: 82 TEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVR 141
Query: 139 EIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRC 198
RE L AL + D D + I D ++ +E A+Y++ ++ YK + R
Sbjct: 142 LKCREMLAAAL-RTGD---DYIAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVRS 193
Query: 199 LLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFP 258
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 194 RISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMAK 252
Query: 259 VGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 253 TGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 24/290 (8%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMC---- 83
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ +
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWKKLLDGPS 81
Query: 84 --WDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSISCMIKC---NDSFR 138
D E+ + E + ++ R D N +S + +DS R
Sbjct: 82 TDKDPEEKKKEPAISSQNSPEAREESSSSSNVSSRKDETNARDTYVSSFPRAPSTSDSVR 141
Query: 139 EIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRC 198
RE L AL + D D V I D ++ +E A+Y++ ++ YK + R
Sbjct: 142 LKCREMLAAAL-RTGD---DYVAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVRS 193
Query: 199 LLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFP 258
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 194 RISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMAK 252
Query: 259 VGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 253 TGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 133/290 (45%), Gaps = 24/290 (8%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMC---- 83
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ +
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPS 81
Query: 84 --WDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSISCMIKC---NDSFR 138
D E+ + E + ++ R D N +S + +DS R
Sbjct: 82 TDKDSEEKKKEPAISSQNSPEAREESSSSSHVSSRKDETNARDTYVSSFPRAPSTSDSVR 141
Query: 139 EIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRC 198
RE L AL + D D V I D ++ +E A+Y++ ++ YK + R
Sbjct: 142 LKCREMLAAAL-RTGD---DYVAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVRS 193
Query: 199 LLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFP 258
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 194 RISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMAK 252
Query: 259 VGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 253 TGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 24/290 (8%)
Query: 29 ARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMC---- 83
A +D L ++KN +T +LL ST++ + + K + +++ LA LI SW+ +
Sbjct: 22 AGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPS 81
Query: 84 --WDVEDVEYVAVTKKAKLVENVKVEEVTNGEERRHDSGNVPKKSISCMIKC---NDSFR 138
D E+ + E + + R D N +S + +DS R
Sbjct: 82 TDKDSEEKKKDTAVTSQNSPEAREESSSSGNMSSRKDETNARDTYVSSFPRAPSTSDSVR 141
Query: 139 EIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRC 198
RE L AL + D D + I D ++ +E A+Y++ ++ YK + R
Sbjct: 142 LKCREMLAAAL-RTGD---DYIAI----GADEEELGSQIEEAIYQEIRNTDMKYKNRVRS 193
Query: 199 LLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFP 258
+ N+ D +N + R+ VL G++ P+ M+A+EMASD+++ +L K+ A+ +
Sbjct: 194 RISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKE-AIREHQMAK 252
Query: 259 VGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 253 TGGTQ----TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 128/289 (44%), Gaps = 32/289 (11%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++K +T LL ST+V + + K S +++ LA LI SW+ + D D +
Sbjct: 28 MDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSSDEEVVTLAKSLIKSWKKL-LDASDAK 86
Query: 91 YVAVTKKAKLVENVKVE--EVTNGEERRHDSGNVPKKS---------ISCMIKCNDSFRE 139
+ L + E E + +R + +P ++C D+ R
Sbjct: 87 ARERRRGGSLPTSSSKEASEAQDPSRKRPELPRMPSTPRITTFPPVPVTC-----DAVRT 141
Query: 140 IVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCL 199
RE L AL +D D V I C +A +E ++ ++ YK + R
Sbjct: 142 KCREMLTAALQ--TDH--DHVAIGADCEC----LAGQIEECIFRDVGNTDMKYKNRVRSR 193
Query: 200 LFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPV 259
L N+ D +N RRKVL G + P+ I M+++EMASD+++ + K+ A+ +
Sbjct: 194 LSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMART 252
Query: 260 GLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 253 GGTQ----TDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 297
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 31/288 (10%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++K IT LL ST+V + + K S +++ LA LI SW+ + D D +
Sbjct: 28 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKL-LDASDAK 86
Query: 91 YVAVTKKAKLVENVK-VEEVTNGEERRHDSGNVPKKS---------ISCMIKCNDSFREI 140
+ L + + E + +R + P ++C D+ R
Sbjct: 87 ARERGRGMPLPTSSRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTC-----DAVRNK 141
Query: 141 VREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLL 200
RE L AL D A + C+ +++ +E ++ ++ YK + R +
Sbjct: 142 CREMLTAALQTDHDHVA------IGADCE--RLSAQIEECIFRDVGNTDMKYKNRVRSRI 193
Query: 201 FNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVG 260
N+ D +N D RR VL G + P+ I M+++EMASD+++ + K+ A+ + G
Sbjct: 194 SNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMARTG 252
Query: 261 LSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
++ +D++ CG+C +Y Q + D +T V C C W
Sbjct: 253 GTQ----TDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 125/289 (43%), Gaps = 32/289 (11%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++KN IT LL ST+V + + K S +++ LA LI SW+ + DV D +
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKL-LDVSDGK 85
Query: 91 YVAVTKKAKLVENVK--VEEVTNGEERRHDSGNVPKKS---------ISCMIKCNDSFRE 139
+ L + T+ ++ D P I+C D+ R
Sbjct: 86 SRNQGRGTPLPTSSSKDASRTTDLSCKKPDPPRTPSTPRITTFPQVPITC-----DAVRN 140
Query: 140 IVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCL 199
RE L AL D A V + ++ +E ++ ++ YK + R
Sbjct: 141 KCREMLTLALQTDHDHVAVGVNCE--------HLSSQIEECIFLDVGNTDMKYKNRVRSR 192
Query: 200 LFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPV 259
+ N+ D +N RR VL G + P+ I M+++EMASD+++ + K+ A+ +
Sbjct: 193 ISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMART 251
Query: 260 GLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ C +C +Y Q + D +T +V C C W
Sbjct: 252 GGTQ----TDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 169 DPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINM 228
DP ++A+ +E +Y +N Y R +FN+ D +N R VL G V+ E M
Sbjct: 171 DPEELAVQIEEKLYSVHRDTNKSYSAAVRSRIFNLRDKKNLALRENVLTGVVRAEKFATM 230
Query: 229 SAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISY-QHSS 287
+++EMAS +I+ K+ L H V ++ SD+++CG+CG +Y Q +
Sbjct: 231 TSEEMASAEIREMRDKFTKEAIL--EHQMSV---QQGTPSDMFKCGKCGKKNCTYTQLQT 285
Query: 288 ILDDYNLTRHVTCLNCNQYW 307
D +T V CL C W
Sbjct: 286 RSSDEPMTTFVFCLECGNRW 305
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 127/289 (43%), Gaps = 32/289 (11%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS-QKIQKLAYDLISSWRDMCWDVEDVE 90
+D L ++KN IT LL ST+V + + K S +++ LA LI SW+ + DV D +
Sbjct: 27 MDLLRELKNMPITLHLLQSTRVGMSVNALRKQSSDEELIALAKSLIKSWKKL-LDVSDGK 85
Query: 91 YVAVTKKAKLVENVK--VEEVTNGEERRHDSGNV---------PKKSISCMIKCNDSFRE 139
+ L + T+ ++ D P+ I+C D+ R
Sbjct: 86 SRDQGRGTPLPTSSSKDASGTTDLSCKKPDPPRTSSTPRITTFPQVPITC-----DAVRN 140
Query: 140 IVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCL 199
RE L AL D A V+ + ++ +E ++ ++ YK + R
Sbjct: 141 KCREMLTLALQTDHDHVAVGVSCE--------HLSSQIEECIFLDVGNTDMKYKNRVRSR 192
Query: 200 LFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPV 259
+ N+ D +N RR VL G + P+ I M+++EMASD+++ + K+ A+ +
Sbjct: 193 ISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKE-AIREHQMART 251
Query: 260 GLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
G ++ +D++ C +C +Y Q + D +T +V C C W
Sbjct: 252 GGTQ----TDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 59/106 (55%), Gaps = 13/106 (12%)
Query: 136 SFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFK 195
S ++I+ ++L D+ KV +E A KV A +E ++ + ++ YK K
Sbjct: 934 SLKDILMKRLTDSNLKVPEEKAAKV-------------ATKIEKELFSFFRDTDAKYKNK 980
Query: 196 YRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLW 241
YR L+FN+ DP+N +KVL G V P+ +I MS +E+AS ++ W
Sbjct: 981 YRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAW 1026
>sp|Q6ZMY3|SPOC1_HUMAN SPOC domain-containing protein 1 OS=Homo sapiens GN=SPOCD1 PE=2
SV=1
Length = 1216
Score = 65.1 bits (157), Expect = 7e-10, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 114 ERRHDSGNVPKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQV 173
E+ DS + ++ S I + ++E L+ L ++ D + ++ +
Sbjct: 589 EQPEDSAQLQQEKPSLYIGVRGTVVRSMQEVLWTRLRELPDPVLSEEVVE--------GI 640
Query: 174 AILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEM 233
A +E+A+++ +NG YK KYR LLFN+ DP N D KV+ G V P ++ MS+ ++
Sbjct: 641 AAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQL 700
Query: 234 ASDKIQLWNHHLDKDG 249
A ++ W +K G
Sbjct: 701 APQELARWRDQEEKRG 716
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 168 CDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIIN 227
CD ++A +E +Y++ ++ Y+ + R + N+ DP N RR VL G + PE I
Sbjct: 211 CD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAK 268
Query: 228 MSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISY-QHS 286
M+A+EMASD+++ + + ++ A+ + G + +D+ C +C +Y Q
Sbjct: 269 MTAEEMASDELRELRNAMTQE-AIREHQMAKTGGT----TTDLLRCSKCKKKNCTYNQVQ 323
Query: 287 SILDDYNLTRHVTCLNCNQYW 307
+ D +T V C C W
Sbjct: 324 TRSADEPMTTFVLCNECGNRW 344
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 126/283 (44%), Gaps = 25/283 (8%)
Query: 32 IDALDQIKNSSI-TYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWRDMCWDVEDVE 90
I+ + ++KN + T +LL T++ + + HP++K+ + A +++ W+ DV
Sbjct: 26 INIMTRLKNEVVATEELLKETRLGLVVGKLRSHPNEKVGEQAREIVKKWK---ADVSKGR 82
Query: 91 YVAVTKKAKLVENVKVEEVTNGE---ERRHDSGNVPKKSISCMIK-CNDSFREIVREKLY 146
+ T + + + + +++ SG KS + + +D R +Y
Sbjct: 83 PLKTTTTTSSTPSKHADVGSQAQKQVQKQSSSGQRTFKSDNVNVNVTDDKIRNNCIGLMY 142
Query: 147 DALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDP 206
+AL SDE++ ++ + KA + I +L +A ++ Y+ + R L N+ D
Sbjct: 143 NALVIDSDESS---SLIIAKAKE-IDAQVLARAA-----GKTGSEYRNRMRSLYMNLKDK 193
Query: 207 ENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPV-GLSRKI 265
N R VL + P+ + M++ E+AS+ +D L ++F G +
Sbjct: 194 NNPKLRASVLRNEITPQRLSTMTSAELASE------DRRKEDAKLEQENLFHAQGAKPQK 247
Query: 266 IVSDIYECGRCGHNKIS-YQHSSILDDYNLTRHVTCLNCNQYW 307
V+D++ CG+C K+S YQ + D +T C C W
Sbjct: 248 AVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRW 290
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 134 NDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYK 193
DS R+ E L AL AD D CD ++A +E +Y++ ++ Y+
Sbjct: 185 GDSVRDKCVEMLSAALK------ADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYR 236
Query: 194 FKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVT 253
+ R + N+ DP N RR VL G + I M+A+EMASD+++ + + ++ A+
Sbjct: 237 NRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQE-AIRE 295
Query: 254 GHIFPVGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+ G + +D+++C +C +Y Q + D +T V C C W
Sbjct: 296 HQMAKTGGT----TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 346
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 134 NDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYK 193
DS R+ E L AL AD D CD ++A +E +Y++ ++ Y+
Sbjct: 184 GDSVRDKCVEMLSAALK------ADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYR 235
Query: 194 FKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVT 253
+ R + N+ DP N RR VL G + I M+A+EMASD+++ + + ++ A+
Sbjct: 236 NRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQE-AIRE 294
Query: 254 GHIFPVGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYW 307
+ G + +D+++C +C +Y Q + D +T V C C W
Sbjct: 295 HQMAKTGGT----TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 169 DPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINM 228
+P ++A +E A+Y ++ ++ YK + R + N+ DP+N R + G V + + M
Sbjct: 176 EPEEMAAELEDAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGLRGNFMCGAVTAKQLAKM 235
Query: 229 SAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISY-QHSS 287
+ +EMASD+++ K+ A+ + V ++ +D+ +C +C +Y Q +
Sbjct: 236 TPEEMASDEMKKLREKFVKE-AINDAQLATVQGTK----TDLLKCAKCKKRNCTYNQLQT 290
Query: 288 ILDDYNLTRHVTCLNCNQYW 307
D +T V C C W
Sbjct: 291 RSADEPMTTFVMCNECGNRW 310
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 18/174 (10%)
Query: 137 FREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYE-KWCRSN-GMYKF 194
R+ V + LYD L+K S+ + + A +ES M + C +N YK
Sbjct: 148 LRDQVLKALYDVLAKESEHPPQSI----------LHTAKAIESEMNKVNNCDTNEAAYKA 197
Query: 195 KYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTG 254
+YR + N+ N D + K+ G + PE + AK++A ++ + K L
Sbjct: 198 RYRIIYSNVISKNNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEIAKQN-LYNA 256
Query: 255 HIFPVGLSRKIIVSDIYECGRCGHNKIS-YQHSSILDDYNLTRHVTCLNCNQYW 307
G + + V+D + CG+C K+S YQ + D LT TC C W
Sbjct: 257 Q----GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 56.2 bits (134), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 112 GEERRHDSGNVPKKSIS---------CMIKCNDSFREIVREKLYDALSKVSDEAADKVTI 162
G R+ S NVP S + + N R+ +R L + L K +++ D +
Sbjct: 633 GVTRKPMSANVPAASPAPGRLGPVSPAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMT 692
Query: 163 DLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKP 222
+ + ++A+ +E M+ + ++ YK KYR ++FN+ DP+NQ +VL +
Sbjct: 693 E----NEVGKIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISL 748
Query: 223 ETIINMSAKEMASDKIQLW 241
++ M +E+ S ++ +W
Sbjct: 749 AKLVRMKPEELVSKELSMW 767
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 52.8 bits (125), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 134 NDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYK 193
N R+ +R L + L K +++ D + + + ++A+ +E M+ + ++ YK
Sbjct: 667 NSQIRQNIRRSLKEILWKRVNDSDDLIMTE----NEVGKIALHIEKEMFNLFQVTDNRYK 722
Query: 194 FKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLW 241
KYR ++FN+ DP+NQ +VL + ++ + +E+ S ++ W
Sbjct: 723 SKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTW 770
>sp|Q6C0K9|BYE1_YARLI Transcription factor BYE1 OS=Yarrowia lipolytica (strain CLIB 122 /
E 150) GN=BYE1 PE=3 SV=1
Length = 822
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 173 VAILVESAMYEKWCR------SNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETII 226
+A+ +E +Y+ + SN Y+ K+R L FN+ D +N+ R +V+ G V P+T++
Sbjct: 237 LALTIEQELYDAYGTVEPEIGSN--YRDKFRTLSFNLRDSKNETLRIRVMTGQVTPQTLV 294
Query: 227 NMSAKEMASDKIQ 239
MS++EM + ++Q
Sbjct: 295 AMSSEEMMNPELQ 307
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 119/331 (35%), Gaps = 59/331 (17%)
Query: 14 RAAVAAVWKEGVVEEARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQKIQKLAY 73
R + K+G ++A ++ L KN IT LL ST + + + + H I +
Sbjct: 8 REQLEKAIKDGEFDKA--LECLKNAKNFKITKDLLKSTDIGKSVGKLRAHKDIGISSQSK 65
Query: 74 DLISSWRDMCWDVEDVEYVAVT------------------------KKAKLVENVKVEEV 109
+LI W+ D+E + K+ + E+
Sbjct: 66 ELIDKWK---QDIEGTSATTTSSSSSSSSSTTSTTTTKTASPSESLKRKSISEDTSDRPT 122
Query: 110 TNG---EERRHDSGNVPKKS-------ISCMIKCNDSFREIVREKLYDALSKVSDEAADK 159
+ E ++ PK S I+ + N R + +AL+ +DE
Sbjct: 123 SKPLLQENKKISPPTTPKTSSPPIASLIAPITGANADLRNKTIQLFVEALTTDNDETMSP 182
Query: 160 VTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGH 219
P +A+ +E+ MY+ + + YK K R FN+ +N R +L
Sbjct: 183 ----------PEDIAVEIEAEMYDIYRGVSKEYKEKLRSFKFNLK--KNDILRLSLLNRQ 230
Query: 220 VKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHN 279
+ +M MASD ++ LDK +G + + +D ++CG+C
Sbjct: 231 ISVAKFCSMDIYSMASDDLKEERKKLDK----FNTEASMLGQNNE-ATTDQFQCGKCKQR 285
Query: 280 KISY-QHSSILDDYNLTRHVTCL--NCNQYW 307
K +Y Q + D T V C C W
Sbjct: 286 KCTYTQLQTRSADEPPTTFVKCCVKGCGNRW 316
>sp|Q9Y7V2|BYE1_SCHPO Transcription factor bye1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=bye1 PE=3 SV=3
Length = 721
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 173 VAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKE 232
+ +V S + N Y+ K+R L FN+ D +N FR +VL + ++N+S++E
Sbjct: 259 IMFMVLSYTTDHSLTPNNKYREKFRALRFNLVDDKNPAFRARVLKNEISFNDLVNLSSEE 318
Query: 233 MASDKIQ 239
MA+ ++
Sbjct: 319 MANPDLK 325
>sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c
OS=Arabidopsis thaliana GN=MED26C PE=2 SV=1
Length = 353
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 28 EARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWRDMC 83
E ++ L +++ IT+Q L T + RH+ + KHPS +++LA L+ W++
Sbjct: 141 EESLVELLQNLEDMDITFQALQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETV 196
>sp|A6ZZW1|BYE1_YEAS7 Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=BYE1 PE=3 SV=1
Length = 594
Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 139 EIVREKLY------DALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMY 192
E + KLY D +S +S E A + +L KAC I+ L + +Y
Sbjct: 256 ETIEAKLYELPDGKDVIS-ISQEFAHNLEEELYKACLNIEFGTL------------DKIY 302
Query: 193 KFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDK 247
K R L N+ D +N + + V+ G + ++NM+A E+A+ +Q + DK
Sbjct: 303 TEKVRSLYSNLKDKKNLELKAHVVEGKLPLNKLVNMNASELANPDLQEFKEKRDK 357
>sp|P36106|BYE1_YEAST Transcription factor BYE1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BYE1 PE=1 SV=1
Length = 594
Score = 38.1 bits (87), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 139 EIVREKLY------DALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMY 192
E + KLY D +S +S E A + +L KAC ++ L + +Y
Sbjct: 256 ETIEAKLYELPDGKDVIS-ISQEFAHNLEEELYKACLNVEFGTL------------DKIY 302
Query: 193 KFKYRCLLFNISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDK 247
K R L N+ D +N + + V+ G + ++NM+A E+A+ +Q + DK
Sbjct: 303 TEKVRSLYSNLKDKKNLELKAHVVEGKLPLNKLVNMNASELANPDLQEFKEKRDK 357
>sp|Q9FHK9|MD26B_ARATH Probable mediator of RNA polymerase II transcription subunit 26b
OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
Length = 436
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 32 IDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWRDMC 83
+D+L +K S+ +L ST++ + + + KH S KI++LA LI+ W+++
Sbjct: 160 LDSLRHLKLMSLNVDILKSTEIGKAVNGLRKHSSDKIRQLAKTLIAEWKELV 211
>sp|Q9Y6D5|BIG2_HUMAN Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo
sapiens GN=ARFGEF2 PE=1 SV=3
Length = 1785
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 108 EVTNGEERRHDSGNV-------PKKSISCMIKCNDSFREIVREKLYDALSKVSDEAADK 159
++TNGE R DSG V P++ S + +D +E+V++ L D ++ EAA+K
Sbjct: 249 DLTNGEHARSDSGKVSTENGDAPRERGSSLSGTDDGAQEVVKDILEDVVTSAIKEAAEK 307
>sp|Q6FJ00|BYE1_CANGA Transcription factor BYE1 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BYE1 PE=3
SV=1
Length = 607
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 172 QVAILVESAMYEKWCRSNGMYKF-------KYRCLLFNISDPENQDFRRKVLLGHVKPET 224
+ A +ES ++ CRS YK K R L N+ DP+N + V+ + E
Sbjct: 279 EFAEEMESKLF-SHCRSISNYKTLISVYTEKVRVLFSNLKDPKNLSLKEAVINRQLDLEQ 337
Query: 225 IINMSAKEMASDKIQLWNHHLD 246
+++MSA ++A+ +Q +D
Sbjct: 338 LVSMSATDLANPDLQSMKKKID 359
>sp|Q9GMV6|TEANC_MACFA Transcription elongation factor A N-terminal and central
domain-containing protein OS=Macaca fascicularis
GN=TCEANC PE=2 SV=1
Length = 350
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 143 EKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFN 202
E LY AL+ S AD+ DL + A +E ++ + ++ YK R + N
Sbjct: 178 ELLYAALTSSS---ADQPKADLWQ-----NFAREIEEHVFTLYSKNIKKYKTCIRSKVAN 229
Query: 203 ISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQ 239
+ +P+N ++ +L G + P M+ EMA+ +++
Sbjct: 230 LKNPKNSHLQQNLLSGTMSPREFAEMTVMEMANKELK 266
>sp|Q8N8B7|TEANC_HUMAN Transcription elongation factor A N-terminal and central
domain-containing protein OS=Homo sapiens GN=TCEANC PE=2
SV=2
Length = 351
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 143 EKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFN 202
E LY AL+ S D+ DL + A +E ++ + ++ YK R + N
Sbjct: 179 ELLYAALTSSS---TDQPKADLWQ-----NFAREIEEHVFTLYSKNIKKYKTCIRSKVAN 230
Query: 203 ISDPENQDFRRKVLLGHVKPETIINMSAKEMASDKIQ 239
+ +P N ++ +L G P M+ EMA+ +++
Sbjct: 231 LKNPRNSHLQQNLLSGTTSPREFAEMTVMEMANKELK 267
>sp|O02739|SPB6_BOVIN Serpin B6 OS=Bos taurus GN=SERPINB6 PE=2 SV=1
Length = 378
Score = 31.6 bits (70), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 45 YQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWRDMC-----WDVEDVEYVAVTKKAK 99
+Q L+S R +L+ ++ + YD +SS++D C ++E++++V+ T++++
Sbjct: 73 FQNLLSEVNRRDTQYLLRTANRLFGEKTYDFLSSFKDSCHKFYQAEMEELDFVSATEQSR 132
Query: 100 LVENVKVEEVTNGEERRHDSGNVPKKSISCMIK 132
N V E T G+ R +P S++ M +
Sbjct: 133 KHINTWVAEKTEGKIRDL----LPANSVNPMTR 161
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,582,812
Number of Sequences: 539616
Number of extensions: 4453220
Number of successful extensions: 12096
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 12052
Number of HSP's gapped (non-prelim): 38
length of query: 319
length of database: 191,569,459
effective HSP length: 117
effective length of query: 202
effective length of database: 128,434,387
effective search space: 25943746174
effective search space used: 25943746174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)