Query 020974
Match_columns 319
No_of_seqs 214 out of 1030
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pqv_S STP-alpha, transcriptio 100.0 7.7E-65 2.6E-69 481.0 24.3 285 2-310 3-309 (309)
2 3po3_S Transcription elongatio 100.0 7E-50 2.4E-54 350.5 12.4 167 129-310 9-178 (178)
3 2lw4_A Transcription elongatio 100.0 3.3E-30 1.1E-34 209.8 6.2 108 130-245 5-112 (113)
4 3ndq_A Transcription elongatio 99.9 1E-27 3.5E-32 193.6 10.6 100 130-237 9-108 (108)
5 2dme_A PHD finger protein 3; P 99.9 2E-28 6.8E-33 201.3 4.7 108 133-245 8-115 (120)
6 1tfi_A Transcriptional elongat 99.8 2.2E-20 7.6E-25 130.1 5.0 45 266-310 5-50 (50)
7 1wjt_A Transcription elongatio 99.7 4.2E-19 1.4E-23 141.9 3.7 81 1-88 10-91 (103)
8 1qyp_A RNA polymerase II; tran 99.7 6.4E-17 2.2E-21 115.8 4.7 42 269-310 14-56 (57)
9 3h0g_I DNA-directed RNA polyme 99.6 1.6E-15 5.4E-20 123.3 4.4 42 268-309 70-112 (113)
10 1twf_I B12.6, DNA-directed RNA 99.6 1.6E-15 5.6E-20 124.8 4.5 44 269-312 71-115 (122)
11 3qt1_I DNA-directed RNA polyme 99.5 3E-15 1E-19 124.8 0.0 42 268-309 90-132 (133)
12 2xpp_A IWS1, ECU08_0440; trans 97.6 2.7E-05 9.1E-10 65.4 3.5 60 26-85 79-140 (145)
13 3nfq_A Transcription factor IW 97.4 9E-05 3.1E-09 63.7 3.1 60 26-85 94-155 (170)
14 2b4j_C PC4 and SFRS1 interacti 97.0 0.00069 2.3E-08 53.0 4.4 79 1-84 4-84 (98)
15 1z9e_A PC4 and SFRS1 interacti 96.7 0.0011 3.7E-08 54.1 3.9 79 1-84 4-84 (127)
16 1k81_A EIF-2-beta, probable tr 92.6 0.1 3.5E-06 33.1 3.1 32 272-309 2-33 (36)
17 2akl_A PHNA-like protein PA012 91.3 0.089 3E-06 42.9 2.2 33 266-308 23-55 (138)
18 2fiy_A Protein FDHE homolog; F 88.4 0.33 1.1E-05 45.3 3.9 43 269-312 181-223 (309)
19 1wii_A Hypothetical UPF0222 pr 85.4 0.93 3.2E-05 34.2 4.2 39 267-309 20-59 (85)
20 1pft_A TFIIB, PFTFIIBN; N-term 84.8 0.47 1.6E-05 31.8 2.1 37 269-313 4-40 (50)
21 2e2z_A TIM15; protein import, 79.9 0.42 1.4E-05 37.1 0.4 35 269-306 12-47 (100)
22 1qxf_A GR2, 30S ribosomal prot 78.9 0.76 2.6E-05 33.0 1.5 29 269-306 6-35 (66)
23 1vq8_Z 50S ribosomal protein L 77.4 0.74 2.5E-05 34.6 1.1 30 269-308 26-56 (83)
24 2xzm_6 RPS27E; ribosome, trans 76.5 1.1 3.6E-05 33.6 1.7 29 269-306 31-60 (81)
25 3u5c_b RP61, YS20, 40S ribosom 75.6 1.2 3.9E-05 33.4 1.7 29 269-306 33-62 (82)
26 3j20_W 30S ribosomal protein S 74.9 1.2 4E-05 31.7 1.5 29 269-306 14-43 (63)
27 2g2k_A EIF-5, eukaryotic trans 74.0 2.4 8.3E-05 36.0 3.5 36 270-309 96-131 (170)
28 3h0g_L DNA-directed RNA polyme 73.2 1.5 5.1E-05 31.2 1.7 30 267-306 18-47 (63)
29 3iz6_X 40S ribosomal protein S 72.2 0.76 2.6E-05 34.7 -0.0 29 269-306 35-64 (86)
30 1twf_L ABC10-alpha, DNA-direct 71.6 1.8 6.1E-05 31.5 1.8 31 266-306 24-54 (70)
31 2e9h_A EIF-5, eukaryotic trans 70.2 3.8 0.00013 34.4 3.8 36 270-309 103-138 (157)
32 1x0t_A Ribonuclease P protein 69.2 3.4 0.00012 33.0 3.2 39 270-309 65-106 (120)
33 2d74_B Translation initiation 68.9 1.2 4.3E-05 37.0 0.6 34 270-309 104-137 (148)
34 1dl6_A Transcription factor II 68.6 4.8 0.00016 27.9 3.5 34 269-310 10-43 (58)
35 1nee_A EIF-2-beta, probable tr 67.7 1.8 6.3E-05 35.6 1.3 32 270-307 102-133 (138)
36 2fiy_A Protein FDHE homolog; F 65.3 3.6 0.00012 38.2 3.0 41 270-312 222-268 (309)
37 2k3r_A Ribonuclease P protein 63.2 4.7 0.00016 32.3 2.9 39 270-309 60-101 (123)
38 3j21_i 50S ribosomal protein L 60.1 3.5 0.00012 30.9 1.5 31 269-308 34-64 (83)
39 3o9x_A Uncharacterized HTH-typ 59.7 6.4 0.00022 30.9 3.2 39 271-309 3-48 (133)
40 2pk7_A Uncharacterized protein 58.3 7.1 0.00024 28.1 2.9 40 268-317 6-45 (69)
41 3iz5_m 60S ribosomal protein L 56.4 4.2 0.00014 31.1 1.4 31 269-308 35-65 (92)
42 2jr6_A UPF0434 protein NMA0874 54.8 7.2 0.00025 28.0 2.4 40 268-317 6-45 (68)
43 3jyw_9 60S ribosomal protein L 54.7 4.3 0.00015 29.6 1.2 31 269-308 25-55 (72)
44 2gut_A ARC/mediator, positive 54.1 22 0.00075 26.2 4.9 56 134-204 11-66 (77)
45 1ffk_W Ribosomal protein L37AE 54.0 6.5 0.00022 28.7 2.1 31 269-308 26-56 (73)
46 2hf1_A Tetraacyldisaccharide-1 53.9 6.9 0.00024 28.1 2.2 40 268-317 6-45 (68)
47 2js4_A UPF0434 protein BB2007; 52.8 7.5 0.00026 28.0 2.2 40 268-317 6-45 (70)
48 3cw2_K Translation initiation 52.4 1.7 5.9E-05 35.8 -1.4 33 269-307 102-134 (139)
49 3ga8_A HTH-type transcriptiona 51.8 7 0.00024 28.4 2.0 39 271-309 3-48 (78)
50 3cc2_Z 50S ribosomal protein L 51.8 4.6 0.00016 32.1 1.0 31 269-308 59-89 (116)
51 2k5r_A Uncharacterized protein 51.4 6.4 0.00022 30.3 1.8 47 269-317 7-72 (97)
52 3izc_m 60S ribosomal protein R 51.3 5.2 0.00018 30.5 1.2 31 269-308 35-65 (92)
53 4a17_Y RPL37A, 60S ribosomal p 50.7 4.3 0.00015 31.6 0.7 32 269-309 35-66 (103)
54 3j21_g 50S ribosomal protein L 46.3 4 0.00014 27.7 -0.1 25 269-306 13-37 (51)
55 1gnf_A Transcription factor GA 45.3 2.8 9.7E-05 27.8 -1.0 37 270-312 4-40 (46)
56 2qkd_A Zinc finger protein ZPR 45.2 16 0.00055 35.1 3.9 41 269-309 219-261 (404)
57 4ayb_P DNA-directed RNA polyme 44.5 9.2 0.00031 25.5 1.4 31 270-307 3-33 (48)
58 1twf_I B12.6, DNA-directed RNA 43.7 13 0.00044 29.5 2.5 36 269-310 3-39 (122)
59 3qt1_I DNA-directed RNA polyme 42.5 11 0.00036 30.7 1.8 40 266-310 20-59 (133)
60 1dxg_A Desulforedoxin; non-hem 42.2 9.7 0.00033 23.6 1.2 14 295-308 4-17 (36)
61 3h0g_I DNA-directed RNA polyme 42.0 12 0.00043 29.2 2.2 36 270-310 4-39 (113)
62 2jny_A Uncharacterized BCR; st 41.6 15 0.00051 26.2 2.3 41 267-317 7-47 (67)
63 1ltl_A DNA replication initiat 40.6 14 0.00048 33.3 2.6 37 266-308 130-168 (279)
64 2qkd_A Zinc finger protein ZPR 40.6 16 0.00055 35.1 3.1 39 271-309 13-53 (404)
65 3j20_Y 30S ribosomal protein S 39.2 19 0.00064 24.1 2.4 30 269-307 18-47 (50)
66 2i5o_A DNA polymerase ETA; zin 38.8 9 0.00031 24.5 0.7 13 267-279 6-18 (39)
67 2vut_I AREA, nitrogen regulato 38.2 3.6 0.00012 26.9 -1.3 34 272-311 3-36 (43)
68 1nwd_B GAD, glutamate decarbox 37.6 13 0.00044 21.3 1.1 14 73-86 12-25 (28)
69 1kdx_A CBP; complex (transcrip 36.9 59 0.002 24.0 5.0 65 134-203 11-75 (81)
70 1vd4_A Transcription initiatio 36.6 6.2 0.00021 26.5 -0.4 38 269-310 13-52 (62)
71 2hgo_A CASSIICOLIN; toxin, dis 33.9 13 0.00046 21.2 0.8 9 302-310 17-25 (27)
72 2adr_A ADR1; transcription reg 33.0 3.5 0.00012 27.0 -2.1 34 271-308 3-41 (60)
73 3v2d_5 50S ribosomal protein L 32.2 8.5 0.00029 26.9 -0.3 24 267-304 27-50 (60)
74 2zjr_Z 50S ribosomal protein L 31.5 11 0.00036 26.4 0.1 26 266-305 26-51 (60)
75 4gl2_A Interferon-induced heli 31.5 24 0.00083 35.2 2.9 19 291-310 635-653 (699)
76 2kwq_A Protein MCM10 homolog; 31.3 19 0.00066 27.4 1.6 14 269-283 47-60 (92)
77 2kpi_A Uncharacterized protein 30.3 27 0.00094 23.8 2.1 39 267-317 7-47 (56)
78 1bbo_A Human enhancer-binding 30.2 3.4 0.00011 26.7 -2.6 34 271-308 2-40 (57)
79 2k4x_A 30S ribosomal protein S 29.2 20 0.0007 24.4 1.3 32 267-307 15-46 (55)
80 2jox_A Churchill protein; zinc 28.7 32 0.0011 26.6 2.4 38 269-306 25-66 (106)
81 3eqt_A ATP-dependent RNA helic 28.3 32 0.0011 28.3 2.6 21 289-309 61-81 (145)
82 4gzn_C ZFP-57, zinc finger pro 28.0 5.6 0.00019 27.3 -1.8 35 270-308 4-43 (60)
83 2gmg_A Hypothetical protein PF 27.4 18 0.00061 28.2 0.8 73 217-309 22-96 (105)
84 2lcq_A Putative toxin VAPC6; P 27.1 13 0.00045 30.6 0.0 30 266-306 128-157 (165)
85 2cot_A Zinc finger protein 435 27.1 7.1 0.00024 27.0 -1.5 37 268-308 16-57 (77)
86 3dfx_A Trans-acting T-cell-spe 26.8 6.6 0.00022 27.8 -1.6 37 269-311 6-42 (63)
87 2ctt_A DNAJ homolog subfamily 26.8 68 0.0023 24.1 4.1 32 269-305 44-75 (104)
88 2kvh_A Zinc finger and BTB dom 26.8 23 0.00079 18.5 1.0 11 298-308 4-14 (27)
89 3a43_A HYPD, hydrogenase nicke 26.5 26 0.00089 28.4 1.7 39 267-306 67-116 (139)
90 3axs_A Probable N(2),N(2)-dime 26.3 20 0.00067 34.2 1.1 34 270-311 244-277 (392)
91 2kvf_A Zinc finger and BTB dom 25.6 25 0.00084 18.4 1.0 11 298-308 4-14 (28)
92 1x6e_A Zinc finger protein 24; 25.6 4 0.00014 28.0 -3.0 36 269-308 13-53 (72)
93 4bbr_M Transcription initiatio 25.5 28 0.00097 32.4 2.0 27 270-304 21-49 (345)
94 1x5w_A Zinc finger protein 64, 25.2 5.1 0.00017 27.3 -2.5 36 269-308 8-48 (70)
95 2jsp_A Transcriptional regulat 25.1 21 0.00072 26.9 0.8 14 296-309 20-33 (87)
96 4ayb_Q DNA-directed RNA polyme 24.9 16 0.00055 27.6 0.1 22 207-228 46-67 (104)
97 1vq8_1 50S ribosomal protein L 24.7 25 0.00087 24.3 1.1 26 268-305 15-40 (57)
98 2lce_A B-cell lymphoma 6 prote 24.7 4.7 0.00016 27.8 -2.8 38 267-308 14-56 (74)
99 6rxn_A Rubredoxin; electron tr 24.5 21 0.00071 23.5 0.6 16 268-283 28-43 (46)
100 4esj_A Type-2 restriction enzy 24.0 30 0.001 30.9 1.7 32 270-307 34-66 (257)
101 2kae_A GATA-type transcription 23.4 10 0.00034 27.5 -1.2 36 269-309 7-42 (71)
102 2zkr_2 60S ribosomal protein L 23.0 23 0.0008 27.1 0.7 27 268-306 14-40 (97)
103 2kvg_A Zinc finger and BTB dom 22.5 25 0.00087 18.5 0.6 11 298-308 4-14 (27)
104 2gx1_A Neurotoxin MAGI-5; spid 22.4 25 0.00086 20.4 0.6 18 296-315 5-26 (29)
105 2l6l_A DNAJ homolog subfamily 21.9 30 0.001 28.1 1.2 35 267-307 109-143 (155)
106 3e9v_A Protein BTG2; B-cell tr 21.8 63 0.0021 25.6 3.0 55 170-226 28-86 (120)
107 2m0d_A Zinc finger and BTB dom 21.7 31 0.0011 18.0 0.9 11 298-308 4-14 (30)
108 2lv2_A Insulinoma-associated p 21.5 18 0.00063 26.4 -0.2 38 267-308 25-67 (85)
109 1yk4_A Rubredoxin, RD; electro 21.4 32 0.0011 23.1 1.1 16 268-283 33-48 (52)
110 1rik_A E6APC1 peptide; E6-bind 21.1 34 0.0012 17.8 1.0 11 298-308 3-13 (29)
111 2lvu_A Zinc finger and BTB dom 26.6 20 0.00069 18.5 0.0 11 298-308 3-13 (26)
112 2k0n_A Mediator of RNA polymer 21.1 1.6E+02 0.0056 21.5 4.8 64 135-204 9-73 (85)
113 2xzf_A Formamidopyrimidine-DNA 21.0 51 0.0017 29.6 2.7 28 271-305 243-270 (271)
114 1x3z_A Peptide: N-glycanase; h 21.0 86 0.0029 29.3 4.2 44 268-311 117-169 (335)
115 1znf_A 31ST zinc finger from X 20.8 27 0.00094 18.0 0.5 11 298-308 2-12 (27)
116 4rxn_A Rubredoxin; electron tr 20.5 28 0.00097 23.7 0.6 17 267-283 33-49 (54)
117 3k1f_M Transcription initiatio 20.4 42 0.0014 28.7 1.8 32 269-308 20-53 (197)
118 4gat_A Nitrogen regulatory pro 20.2 9.2 0.00031 27.3 -2.0 36 269-310 8-43 (66)
119 2eps_A POZ-, at HOOK-, and zin 20.1 5.7 0.00019 25.7 -3.0 36 269-308 11-52 (54)
120 2ct7_A Ring finger protein 31; 20.1 46 0.0016 24.4 1.8 9 298-306 44-52 (86)
121 2olm_A Nucleoporin-like protei 20.0 31 0.0011 28.1 0.9 28 269-304 24-52 (140)
No 1
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=100.00 E-value=7.7e-65 Score=481.04 Aligned_cols=285 Identities=23% Similarity=0.332 Sum_probs=223.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHh-hcCCCCHHhhhcccceeecccccCCCCHHHHHHHHHHHHHHH
Q 020974 2 EKKVMDLCEAAKRAAVAAVWKEGVVEEARCIDALDQI-KNSSITYQLLVSTQVIRHLLPMLKHPSQKIQKLAYDLISSWR 80 (319)
Q Consensus 2 ~~~~~el~~~~~k~~~~a~~~~~~~~~~~~l~~L~~L-~~~~it~~~L~~T~IG~~V~~Lrkh~~~~I~~~Ak~lv~~WK 80 (319)
|.||++++..+.+ .. .+++.++++|++| +.++||+++|++|+||++||+||||++++|+.+|+.||++||
T Consensus 3 ~~el~~~~~~L~k---~~------~~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK 73 (309)
T 1pqv_S 3 SKEVLVHVKNLEK---NK------SNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWK 73 (309)
T ss_pred HHHHHHHHHHHhc---cC------CCHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6788888866666 11 4689999999999 999999999999999999999999999999999999999999
Q ss_pred hhcccccchhhh-------h-hccccccccccccccccCC---ccccCCC-----CCCCCCCcccc--cCCChHHHHHHH
Q 020974 81 DMCWDVEDVEYV-------A-VTKKAKLVENVKVEEVTNG---EERRHDS-----GNVPKKSISCM--IKCNDSFREIVR 142 (319)
Q Consensus 81 ~~v~~~~~~~~~-------~-~~~~~~~s~~~~~~~~~~~---~~s~~~~-----~~~ps~~~~~~--~~~~d~vR~k~r 142 (319)
++|......... . .+.....++.......+.+ ..++.++ ...++++...+ +.++|++|++|+
T Consensus 74 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~R~k~r 153 (309)
T 1pqv_S 74 DAINKNKRSRQAQQHHQDHAPGNAEDKTTVGESVNGVQQPASSQSDAMKQDKYVSTKPRNSKNDGVDTAIYHHKLRDQVL 153 (309)
T ss_pred HHHHHhccCCcccccccccccccccCCCCCCCCcCCCCCCcccccccccCCCCCCCCCCCCCCCCCCcCcCChHHHHHHH
Confidence 999876543111 0 0000000000000000000 0000011 00111122223 368899999999
Q ss_pred HHHHHHHhhhhhhchhhhhhhhhccCChHHHHHHHHHHHHHHhccCchh--HHHHHHHHHHhcCCCCCHHHHHHHhcCCC
Q 020974 143 EKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGM--YKFKYRCLLFNISDPENQDFRRKVLLGHV 220 (319)
Q Consensus 143 ~~L~~aL~~~~~e~~~~~~~~~~~~~d~~~lA~~IE~~lf~~~~~~~~~--Yk~k~Rsl~~NLkd~kN~~Lr~~vl~G~i 220 (319)
++|+++|..+..+.+ .++..+|.+||.+||..|+++... |++++|+|+|||||++||.||++|++|+|
T Consensus 154 ~~L~~aL~~~~~~~~----------~~~~~~A~~IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g~i 223 (309)
T 1pqv_S 154 KALYDVLAKESEHPP----------QSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANGDI 223 (309)
T ss_pred HHHHHHHhcCCCccc----------hhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCcCCChHHHHHHHcCCC
Confidence 999999986432211 156799999999999999876666 99999999999999999999999999999
Q ss_pred ChhhhhcCChhhcCchHHHHHhhhhhhchhhhhcCCCCccccccccccccccccCCCCcceEE-EEeccCCCCCceeEEE
Q 020974 221 KPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVT 299 (319)
Q Consensus 221 ~p~~lv~Ms~eElas~e~k~~~~~~~~~e~l~~~q~~~~~~~~~~~~t~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~ 299 (319)
+|++||.|+++||||++++++++++ .+++|++++++... . +.++.+.||+||+++++| |+|+||||||||+||+
T Consensus 224 ~p~~lv~Ms~eElasde~k~~~~~~-~~e~l~~~~~~~~~---~-~~~~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~ 298 (309)
T 1pqv_S 224 TPEFLATCDAKDLAPAPLKQKIEEI-AKQNLYNAQGATIE---R-SVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCT 298 (309)
T ss_pred CHHHHhcCCHHHhCCHHHHHHHHHH-HHHHHHHhhhcccc---c-cCcccccCCCCCCCeeEEEEeecccCCCCCcEEEE
Confidence 9999999999999999999999999 99999999954332 3 677889999999999999 9999999999999999
Q ss_pred ccCCCCcceec
Q 020974 300 CLNCNQYWVST 310 (319)
Q Consensus 300 C~~C~~~w~~~ 310 (319)
|.+|||+|+||
T Consensus 299 C~~Cg~~w~fc 309 (309)
T 1pqv_S 299 CEACGNRWKFS 309 (309)
T ss_pred eCCCCCceecC
Confidence 99999999998
No 2
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=100.00 E-value=7e-50 Score=350.46 Aligned_cols=167 Identities=26% Similarity=0.432 Sum_probs=146.5
Q ss_pred cccCCChHHHHHHHHHHHHHHhhhhhhchhhhhhhhhccCChHHHHHHHHHHHHHHhcc-Cch-hHHHHHHHHHHhcCCC
Q 020974 129 CMIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCR-SNG-MYKFKYRCLLFNISDP 206 (319)
Q Consensus 129 ~~~~~~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~d~~~lA~~IE~~lf~~~~~-~~~-~Yk~k~Rsl~~NLkd~ 206 (319)
+++.++|++|++|+++|+++|....++.+. ++..+|.+||.+||..|++ .+. .|++++|+|+|||||+
T Consensus 9 ~~~~~~d~vRdk~~~lL~~aL~~~~~~~~~----------~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd~ 78 (178)
T 3po3_S 9 DTAIYHHKLRDQVLKALYDVLAKESEHPPQ----------SILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISK 78 (178)
T ss_dssp ------CHHHHHHHHHHHHHTTSSSSCSTT----------HHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHSS
T ss_pred CcCcCCChHHHHHHHHHHHHHhcCCCCchh----------hHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCCC
Confidence 357799999999999999999976543322 3578999999999999976 344 8999999999999999
Q ss_pred CCHHHHHHHhcCCCChhhhhcCChhhcCchHHHHHhhhhhhchhhhhcCCCCccccccccccccccccCCCCcceEE-EE
Q 020974 207 ENQDFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISY-QH 285 (319)
Q Consensus 207 kN~~Lr~~vl~G~i~p~~lv~Ms~eElas~e~k~~~~~~~~~e~l~~~q~~~~~~~~~~~~t~~~~C~~C~~~~~~~-q~ 285 (319)
+||+|+++|++|+|+|++||.|+++||||++++++++++ ++++|+++|.+..+ + +.|+.+.||+||+++++| |+
T Consensus 79 ~N~~Lr~~vl~g~isp~~lv~Ms~eElas~elk~~~e~~-~~e~l~~~~~~~~~---~-~~t~~~~Cp~C~~~~a~~~q~ 153 (178)
T 3po3_S 79 NNPDLKHKIANGDITPEFLATCDAKDLAPAPLKQKIEEI-AKQNLYNAQGATIE---R-SVTDRFTCGKCKEKKVSYYQL 153 (178)
T ss_dssp SCSHHHHHHHHCCCTTHHHHCCTTTTSSCSHHHHHHHHH-HHHHHHHTBCCCCC---C-CCBSSSCCSSSCCSCEECCCC
T ss_pred CCHHHHHHHhcCCCCHHHHHhcCchhhCCHHHHHHHHHH-HHHHHHHhhhcccc---C-CCcCCcCCCCCCCCceEEEEe
Confidence 999999999999999999999999999999999999999 99999999954333 3 678899999999999999 99
Q ss_pred eccCCCCCceeEEEccCCCCcceec
Q 020974 286 SSILDDYNLTRHVTCLNCNQYWVST 310 (319)
Q Consensus 286 q~rsade~mt~f~~C~~C~~~w~~~ 310 (319)
|+||||||||+||+|.+|||+|+||
T Consensus 154 Q~rsaDE~mt~f~~C~~C~~~w~f~ 178 (178)
T 3po3_S 154 QTRSAAAPLTTFCTCEACGNRWKFS 178 (178)
T ss_dssp CCSCTTSCCCCCEEETTTCCEECCC
T ss_pred ecccCCCCCcEEEEcCCCCCeeccC
Confidence 9999999999999999999999987
No 3
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.96 E-value=3.3e-30 Score=209.79 Aligned_cols=108 Identities=28% Similarity=0.409 Sum_probs=96.9
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhhhhchhhhhhhhhccCChHHHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCH
Q 020974 130 MIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQ 209 (319)
Q Consensus 130 ~~~~~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~d~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~~NLkd~kN~ 209 (319)
.|.++|++|++|+++|+++|....++. ....++..+|.+||.++|..|+.++..|++++|||+|||||++||
T Consensus 5 ~p~t~D~vRdk~~e~L~~aL~~~~~~~--------~~~~~~~~~A~~IE~~~f~~~~~~~~~Yk~k~Rsl~~NLkd~~Np 76 (113)
T 2lw4_A 5 VPVTCDAVRNKCREMLTAALQTDHDHV--------AIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNP 76 (113)
T ss_dssp SCCCCSTTHHHHHHHHHHHHHSSTHHH--------HHTCCHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHCSSSS
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCcc--------cccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCH
Confidence 367899999999999999998533211 123567899999999999999988889999999999999999999
Q ss_pred HHHHHHhcCCCChhhhhcCChhhcCchHHHHHhhhh
Q 020974 210 DFRRKVLLGHVKPETIINMSAKEMASDKIQLWNHHL 245 (319)
Q Consensus 210 ~Lr~~vl~G~i~p~~lv~Ms~eElas~e~k~~~~~~ 245 (319)
+||++|++|+|+|++||.|+++||||+|++++|+++
T Consensus 77 ~Lr~~vl~G~i~p~~l~~Ms~eEmAs~elk~~r~~~ 112 (113)
T 2lw4_A 77 DLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAM 112 (113)
T ss_dssp HHHHHHHTTSSCHHHHHHSCHHHHHCTTTTTCSSSC
T ss_pred HHHHHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHc
Confidence 999999999999999999999999999999999876
No 4
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=99.95 E-value=1e-27 Score=193.65 Aligned_cols=100 Identities=31% Similarity=0.434 Sum_probs=85.9
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhhhhchhhhhhhhhccCChHHHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCH
Q 020974 130 MIKCNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQ 209 (319)
Q Consensus 130 ~~~~~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~d~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~~NLkd~kN~ 209 (319)
.|.++|++|++|+++|+++|....+.. + ...++..+|.+||.+||..|+..+..|++++|||+|||||++||
T Consensus 9 ~~~t~d~vR~k~~~lL~~aL~~~~d~~------~--~~~~~~~lA~~IE~~if~~~~~~~~~Yk~k~Rsl~fNLKd~kNp 80 (108)
T 3ndq_A 9 APSTSDSVRLKCREMLAAALRTGDDYI------A--IGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNP 80 (108)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTGGGHHH------H--HTCCHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTCTTCH
T ss_pred CCCCCChHHHHHHHHHHHHHHcCCCCC------c--ccccHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCCCCCH
Confidence 356899999999999999999743211 1 23567899999999999999887889999999999999999999
Q ss_pred HHHHHHhcCCCChhhhhcCChhhcCchH
Q 020974 210 DFRRKVLLGHVKPETIINMSAKEMASDK 237 (319)
Q Consensus 210 ~Lr~~vl~G~i~p~~lv~Ms~eElas~e 237 (319)
+||++|++|+|+|++||.|+++||||+|
T Consensus 81 ~Lr~~vl~G~isp~~lv~Ms~eEmAS~E 108 (108)
T 3ndq_A 81 NLRKNVLCGNIPPDLFARMTAEEMASDE 108 (108)
T ss_dssp HHHHHHHHTSSCHHHHHHCCTTTC----
T ss_pred HHHHHHHcCCcCHHHHhCCCHHHccCCC
Confidence 9999999999999999999999999986
No 5
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=2e-28 Score=201.34 Aligned_cols=108 Identities=34% Similarity=0.558 Sum_probs=96.0
Q ss_pred CChHHHHHHHHHHHHHHhhhhhhchhhhhhhhhccCChHHHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCCCCHHHH
Q 020974 133 CNDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNISDPENQDFR 212 (319)
Q Consensus 133 ~~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~d~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~~NLkd~kN~~Lr 212 (319)
++|++|++|+++|+++|...+.+.+.. ...+++..+|.+||.+||..|+..+..|++++|+|+|||||++||+||
T Consensus 8 ~~d~~Rd~~r~~L~eaL~~~~~~~~~~-----~~~~~~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~fNLKd~kNp~Lr 82 (120)
T 2dme_A 8 SADQIRQSVRHSLKDILMKRLTDSNLK-----VPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILF 82 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTCC-----CCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHTHHHHSSSCCSHH
T ss_pred CCchHHHHHHHHHHHHHHHhccccccc-----cchhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCCCCHHHH
Confidence 568999999999999999876543211 112346789999999999999887889999999999999999999999
Q ss_pred HHHhcCCCChhhhhcCChhhcCchHHHHHhhhh
Q 020974 213 RKVLLGHVKPETIINMSAKEMASDKIQLWNHHL 245 (319)
Q Consensus 213 ~~vl~G~i~p~~lv~Ms~eElas~e~k~~~~~~ 245 (319)
++|++|+|+|++||.|+++||||+|++++|+++
T Consensus 83 ~~vl~G~i~p~~lv~Ms~eEmAS~elk~~r~~~ 115 (120)
T 2dme_A 83 KKVLKGEVTPDHLIRMSPEELASKELAAWRRRS 115 (120)
T ss_dssp HHHHHTSSCTTHHHHSCTTTTTTCCSTTTCTTC
T ss_pred HHHHcCCCCHHHHhcCCHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999988
No 6
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.80 E-value=2.2e-20 Score=130.13 Aligned_cols=45 Identities=27% Similarity=0.667 Sum_probs=43.1
Q ss_pred cccccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCcceec
Q 020974 266 IVSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYWVST 310 (319)
Q Consensus 266 ~~t~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~w~~~ 310 (319)
+.|+.+.||+||+++++| |+|+||||||||+||+|.+|||+|++|
T Consensus 5 ~~t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~~~ 50 (50)
T 1tfi_A 5 TQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 50 (50)
T ss_dssp EECCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEECC
T ss_pred ceeCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEEeC
Confidence 677889999999999999 999999999999999999999999986
No 7
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=99.74 E-value=4.2e-19 Score=141.87 Aligned_cols=81 Identities=17% Similarity=0.339 Sum_probs=71.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcCCCCHHhhhcccceeecccccCC-CCHHHHHHHHHHHHHH
Q 020974 1 MEKKVMDLCEAAKRAAVAAVWKEGVVEEARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKH-PSQKIQKLAYDLISSW 79 (319)
Q Consensus 1 ~~~~~~el~~~~~k~~~~a~~~~~~~~~~~~l~~L~~L~~~~it~~~L~~T~IG~~V~~Lrkh-~~~~I~~~Ak~lv~~W 79 (319)
||.|++++++.+.+++... +++.++++|++|+.++||+++|++|+||++||+|||| +|++|+.+|+.||++|
T Consensus 10 ~e~ev~~i~k~L~k~~~~~-------~~~~~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~W 82 (103)
T 1wjt_A 10 LEEELLRIAKKLEKMVSRK-------KTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 82 (103)
T ss_dssp SHHHHHHHHHHHHHHHHTT-------CCSSHHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 4789999998777766532 4678999999999999999999999999999999998 8999999999999999
Q ss_pred Hhhcccccc
Q 020974 80 RDMCWDVED 88 (319)
Q Consensus 80 K~~v~~~~~ 88 (319)
|++|.....
T Consensus 83 K~~v~~~~~ 91 (103)
T 1wjt_A 83 KRLLDSPRT 91 (103)
T ss_dssp HHHTCCSCC
T ss_pred HHHHHHhcc
Confidence 999986443
No 8
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.65 E-value=6.4e-17 Score=115.84 Aligned_cols=42 Identities=21% Similarity=0.509 Sum_probs=39.7
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCcceec
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYWVST 310 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~w~~~ 310 (319)
..++||+||+++++| |+|+||||||||+||+|.+|||+|+..
T Consensus 14 ~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~~ 56 (57)
T 1qyp_A 14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRSY 56 (57)
T ss_dssp EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEECC
T ss_pred eEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEeccC
Confidence 468999999999999 999999999999999999999999863
No 9
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.56 E-value=1.6e-15 Score=123.27 Aligned_cols=42 Identities=24% Similarity=0.425 Sum_probs=39.3
Q ss_pred cccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCccee
Q 020974 268 SDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
+..+.||+||+++++| |+|+||||||||+||+|.+|||+|+.
T Consensus 70 ~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 70 RSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp BCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred CcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 3448999999999999 99999999999999999999999975
No 10
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=99.56 E-value=1.6e-15 Score=124.79 Aligned_cols=44 Identities=20% Similarity=0.460 Sum_probs=41.2
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCcceeccc
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYWVSTNL 312 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~w~~~~~ 312 (319)
..+.||+||+++++| |+|+||||||||+||+|.+|||+|+..+.
T Consensus 71 t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~nn~ 115 (122)
T 1twf_I 71 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQK 115 (122)
T ss_dssp CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCTT
T ss_pred cCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccCCh
Confidence 368999999999999 99999999999999999999999998754
No 11
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=99.48 E-value=3e-15 Score=124.76 Aligned_cols=42 Identities=24% Similarity=0.510 Sum_probs=0.0
Q ss_pred cccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCccee
Q 020974 268 SDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
+..+.||+||+++++| |+|+||||||||+||+|.+|||+|+.
T Consensus 90 ~t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~e 132 (133)
T 3qt1_I 90 RSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKE 132 (133)
T ss_dssp -------------------------------------------
T ss_pred cccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCc
Confidence 3458999999999999 99999999999999999999999985
No 12
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=97.64 E-value=2.7e-05 Score=65.44 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=54.3
Q ss_pred ccHHHHHHHHHHhhcCCCCHHhhhcccceeecccccCCCC--HHHHHHHHHHHHHHHhhccc
Q 020974 26 VEEARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS--QKIQKLAYDLISSWRDMCWD 85 (319)
Q Consensus 26 ~~~~~~l~~L~~L~~~~it~~~L~~T~IG~~V~~Lrkh~~--~~I~~~Ak~lv~~WK~~v~~ 85 (319)
|+..---.+|+-|.++||+.+.|++++||++|..|.+|+. ++++.+|..||.+|.+-+-.
T Consensus 79 P~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi~~ 140 (145)
T 2xpp_A 79 PNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEVFK 140 (145)
T ss_dssp CCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHHhC
Confidence 7777777888999999999999999999999999999975 89999999999999997753
No 13
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=97.35 E-value=9e-05 Score=63.67 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHHhhcCCCCHHhhhcccceeecccccCCCC--HHHHHHHHHHHHHHHhhccc
Q 020974 26 VEEARCIDALDQIKNSSITYQLLVSTQVIRHLLPMLKHPS--QKIQKLAYDLISSWRDMCWD 85 (319)
Q Consensus 26 ~~~~~~l~~L~~L~~~~it~~~L~~T~IG~~V~~Lrkh~~--~~I~~~Ak~lv~~WK~~v~~ 85 (319)
|+..--..+|+-|.++||+.+.|+.++||++|..+.+|+. ++++.+|..||.+|-+-+-.
T Consensus 94 P~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsRpI~~ 155 (170)
T 3nfq_A 94 PSFEIQKSLFAALNDLPVKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTRPIIG 155 (170)
T ss_dssp CCHHHHHHHHHHHHTSCCCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTCCCC-
T ss_pred CcHHHHHHHHHHHHHCCCCHHHHhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHHHHhC
Confidence 6666667788888899999999999999999999999975 88999999999999887754
No 14
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=96.97 E-value=0.00069 Score=52.97 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=64.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcCCCCHHhhhcc-cceeecccccCC-CCHHHHHHHHHHHHH
Q 020974 1 MEKKVMDLCEAAKRAAVAAVWKEGVVEEARCIDALDQIKNSSITYQLLVST-QVIRHLLPMLKH-PSQKIQKLAYDLISS 78 (319)
Q Consensus 1 ~~~~~~el~~~~~k~~~~a~~~~~~~~~~~~l~~L~~L~~~~it~~~L~~T-~IG~~V~~Lrkh-~~~~I~~~Ak~lv~~ 78 (319)
||..|++|....+-++... + ++..+|+++|..|.++++|.-+|+.- .+--++.+||+. .+..|++.|..|+.+
T Consensus 4 ~E~~l~~L~~~ik~~L~~~----~-~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~iY~k 78 (98)
T 2b4j_C 4 MDSRLQRIHAEIKNSLKID----N-LDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNK 78 (98)
T ss_dssp HHHHHHHHHHHHHHHTCTT----S-CCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC----C-CCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 5888899886666555543 2 78999999999999999999877654 477788888885 679999999999999
Q ss_pred HHhhcc
Q 020974 79 WRDMCW 84 (319)
Q Consensus 79 WK~~v~ 84 (319)
.|.++.
T Consensus 79 fK~~f~ 84 (98)
T 2b4j_C 79 FKNMFL 84 (98)
T ss_dssp HHHC--
T ss_pred HHHHHh
Confidence 999985
No 15
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=96.73 E-value=0.0011 Score=54.09 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=66.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcCCCCHHhhhc-ccceeecccccCC-CCHHHHHHHHHHHHH
Q 020974 1 MEKKVMDLCEAAKRAAVAAVWKEGVVEEARCIDALDQIKNSSITYQLLVS-TQVIRHLLPMLKH-PSQKIQKLAYDLISS 78 (319)
Q Consensus 1 ~~~~~~el~~~~~k~~~~a~~~~~~~~~~~~l~~L~~L~~~~it~~~L~~-T~IG~~V~~Lrkh-~~~~I~~~Ak~lv~~ 78 (319)
||..|++|....+-++.... +++.+|+++|..|.++++|.-+|+. +.+--++.+||+. .|..|++.|..|+.+
T Consensus 4 ~E~~L~~L~~~Ik~~L~v~~-----~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~k 78 (127)
T 1z9e_A 4 MDSRLQRIHAEIKNSLKIDN-----LDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNK 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTCGGG-----CCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCC-----CCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 57889999866666665542 7899999999999999999987764 4477788889885 578899999999999
Q ss_pred HHhhcc
Q 020974 79 WRDMCW 84 (319)
Q Consensus 79 WK~~v~ 84 (319)
.|.++.
T Consensus 79 FK~lf~ 84 (127)
T 1z9e_A 79 FKNMFL 84 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999995
No 16
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=92.56 E-value=0.1 Score=33.08 Aligned_cols=32 Identities=16% Similarity=0.447 Sum_probs=26.1
Q ss_pred cccCCCCcceEEEEeccCCCCCceeEEEccCCCCccee
Q 020974 272 ECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 272 ~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
.|+.||+.++.+... .-..|..|..||+++..
T Consensus 2 lC~~C~~peT~l~~~------~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 2 ICRECGKPDTKIIKE------GRVHLLKCMACGAIRPI 33 (36)
T ss_dssp CCSSSCSCEEEEEEE------TTEEEEEEETTTEEEEE
T ss_pred CCcCCCCCCcEEEEe------CCcEEEEhhcCCCcccc
Confidence 699999999999442 24689999999998865
No 17
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=91.33 E-value=0.089 Score=42.87 Aligned_cols=33 Identities=30% Similarity=0.802 Sum_probs=23.9
Q ss_pred cccccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcce
Q 020974 266 IVSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 266 ~~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 308 (319)
..++.-.||+|++.- +|+ |..+ |+|..|+|.|.
T Consensus 23 ~M~~lP~CP~C~sey-tYe------Dg~l---~vCPeC~hEW~ 55 (138)
T 2akl_A 23 MVSTLPPCPQCNSEY-TYE------DGAL---LVCPECAHEWS 55 (138)
T ss_dssp CCCCSCCCTTTCCCC-CEE------CSSS---EEETTTTEEEC
T ss_pred ccccCCCCCCCCCcc-eEe------cCCe---EECCccccccC
Confidence 345668999999954 443 2222 89999999996
No 18
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=88.40 E-value=0.33 Score=45.34 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=30.0
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceeccc
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTNL 312 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~~ 312 (319)
..-.||-||+.-..-.+..+ .++.-..|..|.-||+.|.+-|.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~-g~~~G~R~l~Cs~C~t~W~~~R~ 223 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQG-GKETGLRYLSCSLCACEWHYVRI 223 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC-----CCEEEEEETTTCCEEECCTT
T ss_pred cCCCCCCCCCcCceeEEeec-CCCCCcEEEEeCCCCCEEeecCc
Confidence 45689999997665455432 22334579999999999998775
No 19
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=85.42 E-value=0.93 Score=34.24 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=29.6
Q ss_pred ccccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCccee
Q 020974 267 VSDIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
-...|.||.|++.++.- .+- | ..++-.+.|..||.++.+
T Consensus 20 L~t~F~CPfCnh~~sV~vkid-k---~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 20 LETQFTCPFCNHEKSCDVKMD-R---ARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CSSCCCCTTTCCSSCEEEEEE-T---TTTEEEEEESSSCCEEEE
T ss_pred CCCeEcCCCCCCCCeEEEEEE-c---cCCEEEEEcccCCCeEEe
Confidence 34679999999998766 553 2 245788999999988754
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=84.80 E-value=0.47 Score=31.78 Aligned_cols=37 Identities=14% Similarity=0.372 Sum_probs=24.8
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceecccc
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTNLS 313 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~~~ 313 (319)
..+.||.||+....|-. . +.-++|..||.-+.....+
T Consensus 4 ~~~~CP~C~~~~l~~d~---~-----~gelvC~~CG~v~~e~~id 40 (50)
T 1pft_A 4 KQKVCPACESAELIYDP---E-----RGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp SCCSCTTTSCCCEEEET---T-----TTEEEESSSCCBCCCCCCC
T ss_pred ccEeCcCCCCcceEEcC---C-----CCeEECcccCCcccccccc
Confidence 35789999997666621 1 2237999999877654433
No 21
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=79.86 E-value=0.42 Score=37.15 Aligned_cols=35 Identities=14% Similarity=0.342 Sum_probs=27.1
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCc
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~ 306 (319)
-.|+|..|+.|..-- ..| |=+--++|++|..|.++
T Consensus 12 l~FTC~~C~tRs~k~iSk~---aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 12 IAFTCKKCNTRSSHTMSKQ---AYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEEETTTTEEEEEEEEHH---HHHTSEEEEECTTTCCE
T ss_pred EEEEccCCCCcchhhcCHH---HhhCCEEEEEcCCCccc
Confidence 469999999988655 333 44455899999999987
No 22
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=78.91 E-value=0.76 Score=32.99 Aligned_cols=29 Identities=24% Similarity=0.670 Sum_probs=24.2
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCc
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~ 306 (319)
-+.+||.|++-.+.| ..|+ -|.|..||..
T Consensus 6 m~VKCp~C~niq~VFShA~t---------vV~C~~Cg~~ 35 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPST---------IVKCIICGRT 35 (66)
T ss_dssp EEEECTTTCCEEEEESSCSS---------CEECSSSCCE
T ss_pred EEEECCCCCCceEEEecCce---------EEEcccCCCE
Confidence 357999999999999 7775 3899999864
No 23
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=77.40 E-value=0.74 Score=34.62 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=22.0
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~w~ 308 (319)
..|.||.||. ...| .. +-.+.|..||+.+-
T Consensus 26 ~~y~Cp~CG~-~~v~r~a---------tGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGE-DRVDRQG---------TGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCC-EEEEEEE---------TTEEEETTTCCEEE
T ss_pred ccCcCCCCCC-cceeccC---------CCeEECCCCCCEec
Confidence 4699999997 4555 22 23689999999853
No 24
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=76.50 E-value=1.1 Score=33.56 Aligned_cols=29 Identities=17% Similarity=0.558 Sum_probs=24.1
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCc
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~ 306 (319)
....|+.|++-.+.| ..|| .|.|..||..
T Consensus 31 m~VkCp~C~n~q~VFShA~t---------~V~C~~Cg~~ 60 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQS---------TIICEKCSAI 60 (81)
T ss_dssp EEEECSSSCCEEEEETTCSS---------CEECSSSCCE
T ss_pred EEeECCCCCCeeEEEecCcc---------EEEccCCCCE
Confidence 456999999999999 7764 4899999964
No 25
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=75.58 E-value=1.2 Score=33.40 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=24.4
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCc
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~ 306 (319)
-...|+.|++..+.| ..|+ -|.|..||..
T Consensus 33 m~VkCp~C~~~q~VFSha~t---------~V~C~~Cg~~ 62 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQT---------AVTCESCSTI 62 (82)
T ss_dssp EEEECTTSCSCEEEESBCSS---------CCCCSSSCCC
T ss_pred EEEECCCCCCeeEEEecCCe---------EEEccccCCE
Confidence 468999999999999 8775 2789999864
No 26
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.94 E-value=1.2 Score=31.73 Aligned_cols=29 Identities=28% Similarity=0.681 Sum_probs=24.2
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCc
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~ 306 (319)
-..+|+.|++..+.| ..|+ -|.|..||..
T Consensus 14 m~VkCp~C~~~q~VFSha~t---------~V~C~~Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPAT---------KVRCLICGAT 43 (63)
T ss_dssp EEEECSSSCCEEEEESSCSS---------CEECSSSCCE
T ss_pred EEEECCCCCCeeEEEecCCe---------EEEccCcCCE
Confidence 467999999999999 7764 3899999864
No 27
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=73.99 E-value=2.4 Score=36.03 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=27.8
Q ss_pred cccccCCCCcceEEEEeccCCCCCceeEEEccCCCCccee
Q 020974 270 IYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 270 ~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
-..|+.|++.++.+.... +.-..|..|..||++--+
T Consensus 96 YVlC~~C~sPdT~L~k~~----~~r~~~l~C~ACGa~~~V 131 (170)
T 2g2k_A 96 FVLCPECENPETDLHVNP----KKQTIGNSCKACGYRGML 131 (170)
T ss_dssp HHSCTTTSSSCEEEEEET----TTTEEEEEETTTCCCCCS
T ss_pred eEECCCCCCCccEEEEec----CCCEEEEEccccCCcccc
Confidence 378999999999995531 334689999999987543
No 28
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=73.21 E-value=1.5 Score=31.25 Aligned_cols=30 Identities=23% Similarity=0.581 Sum_probs=20.3
Q ss_pred ccccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCc
Q 020974 267 VSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 306 (319)
..-.|.|++||...-. +.. ++ +.|.+||+|
T Consensus 18 ~~v~Y~C~~Cg~~~~l-----~~~-~~----iRC~~CG~R 47 (63)
T 3h0g_L 18 ATMIYLCADCGARNTI-----QAK-EV----IRCRECGHR 47 (63)
T ss_dssp -CCCCBCSSSCCBCCC-----CSS-SC----CCCSSSCCC
T ss_pred CCeEEECCCCCCeeec-----CCC-Cc----eECCCCCcE
Confidence 3456999999875432 222 22 699999998
No 29
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=72.18 E-value=0.76 Score=34.69 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=24.0
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCc
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~ 306 (319)
-...|+.|++-.+.| ..|| .|.|..||..
T Consensus 35 m~VkCp~C~~~~~VFShA~t---------~V~C~~Cgtv 64 (86)
T 3iz6_X 35 MDVKCQGCFNITTVFSHSQT---------VVVCPGCQTV 64 (86)
T ss_dssp EEEECTTTCCEEEEETTCSS---------CCCCSSSCCC
T ss_pred eEEECCCCCCeeEEEecCCc---------EEEccCCCCE
Confidence 458999999999999 7764 4799999864
No 30
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=71.59 E-value=1.8 Score=31.46 Aligned_cols=31 Identities=23% Similarity=0.489 Sum_probs=20.1
Q ss_pred cccccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCc
Q 020974 266 IVSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 266 ~~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 306 (319)
...-.|.|+.||..--. +..| + +.|.+||+|
T Consensus 24 ~~~v~Y~C~~CG~~~e~-----~~~d-~----irCp~CG~R 54 (70)
T 1twf_L 24 TATLKYICAECSSKLSL-----SRTD-A----VRCKDCGHR 54 (70)
T ss_dssp -CCCCEECSSSCCEECC-----CTTS-T----TCCSSSCCC
T ss_pred CceEEEECCCCCCccee-----CCCC-C----ccCCCCCce
Confidence 34567999999984221 2223 2 489999995
No 31
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.18 E-value=3.8 Score=34.39 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=27.5
Q ss_pred cccccCCCCcceEEEEeccCCCCCceeEEEccCCCCccee
Q 020974 270 IYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 270 ~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
-..|+.|++.++.+.... +.-..|..|..||.+--+
T Consensus 103 YVlC~~C~sPdT~L~~~~----~~r~~~l~C~ACGa~~~V 138 (157)
T 2e9h_A 103 FVLCPECENPETDLHVNP----KKQTIGNSCKACGYRGML 138 (157)
T ss_dssp TTSCTTTCCSCCEEEEET----TTTEEEEECSSSCCEEEC
T ss_pred eEECCCCCCCccEEEEec----CCCEEEEEccCCCCCCcc
Confidence 368999999999995421 234789999999987543
No 32
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=69.22 E-value=3.4 Score=32.99 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=23.4
Q ss_pred cccccCCCCc---ceEEEEeccCCCCCceeEEEccCCCCccee
Q 020974 270 IYECGRCGHN---KISYQHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 270 ~~~C~~C~~~---~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
..-|.+||.- ..+-.+.+++.--| .+.|+|..||+.-++
T Consensus 65 R~~Ck~C~s~LiPG~t~~vri~~~~~~-~vv~tCl~Cg~~kR~ 106 (120)
T 1x0t_A 65 RRYCKRCHTFLIPGVNARVRLRTKRMP-HVVITCLECGYIMRY 106 (120)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEECSSSC-EEEEEETTTCCEEEE
T ss_pred HHhccCCCCEeECCCceEEEEecCCcc-EEEEECCCCCCEEEE
Confidence 4589999872 22222222222122 588899999987654
No 33
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=68.90 E-value=1.2 Score=37.00 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=26.3
Q ss_pred cccccCCCCcceEEEEeccCCCCCceeEEEccCCCCccee
Q 020974 270 IYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 270 ~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
-..|+.||+.++.+.. +.-..|..|..||.+.-+
T Consensus 104 yVlC~~C~sPdT~L~k------~~r~~~l~C~ACGa~~~V 137 (148)
T 2d74_B 104 YVICPVCGSPDTKIIK------RDRFHFLKCEACGAETPI 137 (148)
T ss_dssp HSSCSSSCCTTCCCCB------SSSSBCCCCSSSCCCCCC
T ss_pred EEECCCCCCcCcEEEE------eCCEEEEEecCCCCCccc
Confidence 3689999999998743 123688999999987643
No 34
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=68.57 E-value=4.8 Score=27.87 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=22.3
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceec
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVST 310 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~ 310 (319)
....||.||+....|. ..+.| +.|..||.-+...
T Consensus 10 ~~~~Cp~C~~~~lv~D---~~~ge-----~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 10 PRVTCPNHPDAILVED---YRAGD-----MICPECGLVVGDR 43 (58)
T ss_dssp SCCSBTTBSSSCCEEC---SSSCC-----EECTTTCCEECCS
T ss_pred ccccCcCCCCCceeEe---CCCCe-----EEeCCCCCEEecc
Confidence 3458999999776651 12223 7999998655433
No 35
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=67.70 E-value=1.8 Score=35.55 Aligned_cols=32 Identities=13% Similarity=0.304 Sum_probs=25.2
Q ss_pred cccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcc
Q 020974 270 IYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYW 307 (319)
Q Consensus 270 ~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 307 (319)
-..|+.|++.++.+..- .-..|..|..||.+-
T Consensus 102 yVlC~~C~sPdT~l~k~------~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 102 FVICHECNRPDTRIIRE------GRISLLKCEACGAKA 133 (138)
T ss_dssp HHHHTCCSSCSSCCEEE------TTTTEEECSTTSCCC
T ss_pred EEECCCCCCcCcEEEEc------CCeEEEEccCCCCCc
Confidence 47899999999988532 235889999999763
No 36
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=65.31 E-value=3.6 Score=38.23 Aligned_cols=41 Identities=27% Similarity=0.534 Sum_probs=28.4
Q ss_pred cccccCCCCcce-EEEEeccCC-----CCCceeEEEccCCCCcceeccc
Q 020974 270 IYECGRCGHNKI-SYQHSSILD-----DYNLTRHVTCLNCNQYWVSTNL 312 (319)
Q Consensus 270 ~~~C~~C~~~~~-~~q~q~rsa-----de~mt~f~~C~~C~~~w~~~~~ 312 (319)
...|+.||+.+- .| ++-.. +++.....+|..||+.+|.-..
T Consensus 222 R~~C~~Cg~~~~l~y--~~~e~~~~~~~~~~~r~e~C~~C~~YlK~~~~ 268 (309)
T 2fiy_A 222 RIKCSHCEESKHLAY--LSLEHDGQPAEKAVLRAETCPSCQGYLKQFYL 268 (309)
T ss_dssp TTSCSSSCCCSCCEE--ECCCC-CCCSTTCSEEEEEETTTTEEEEEEET
T ss_pred CcCCcCCCCCCCeeE--EEecCccccCCCcceEEEEcccccchHhhhhh
Confidence 468899998543 33 22123 4577788999999999997543
No 37
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=63.19 E-value=4.7 Score=32.34 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=23.2
Q ss_pred cccccCCCCc---ceEEEEeccCCCCCceeEEEccCCCCccee
Q 020974 270 IYECGRCGHN---KISYQHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 270 ~~~C~~C~~~---~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
..-|.+|+.- ..+-.+.+++.-. -.+.++|..||+.-++
T Consensus 60 R~~Ck~C~s~LIPG~t~~vri~~~~k-~~vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 60 RRYCKKCHAFLVPGINARVRLRQKRM-PHIVVKCLECGHIMRY 101 (123)
T ss_dssp TSBCTTTCCBCCBTTTEEEEEECSSS-CEEEEEETTTTEEEEE
T ss_pred HHhccCCCCEeECCCceEEEEecCCc-cEEEEECCCCCCEEEE
Confidence 4589999872 2222222222211 2578899999987654
No 38
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=60.14 E-value=3.5 Score=30.94 Aligned_cols=31 Identities=19% Similarity=0.522 Sum_probs=22.7
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 308 (319)
..+.||.||...+. |.+ +-++.|..||..|-
T Consensus 34 ~ky~CpfCGk~~vk-----R~a----~GIW~C~kCg~~~A 64 (83)
T 3j21_i 34 QKHTCPVCGRKAVK-----RIS----TGIWQCQKCGATFA 64 (83)
T ss_dssp SCBCCSSSCSSCEE-----EEE----TTEEEETTTCCEEE
T ss_pred cccCCCCCCCceeE-----ecC----cCeEEcCCCCCEEe
Confidence 45899999998543 222 45689999998864
No 39
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=59.69 E-value=6.4 Score=30.95 Aligned_cols=39 Identities=10% Similarity=0.377 Sum_probs=22.9
Q ss_pred ccccCCCCcceEE---EEeccCCCCCce----eEEEccCCCCccee
Q 020974 271 YECGRCGHNKISY---QHSSILDDYNLT----RHVTCLNCNQYWVS 309 (319)
Q Consensus 271 ~~C~~C~~~~~~~---q~q~rsade~mt----~f~~C~~C~~~w~~ 309 (319)
..||.||+..... .....-.++..+ .++.|.+||..+..
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECC
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeec
Confidence 4899999875432 111111222222 47899999988754
No 40
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=58.26 E-value=7.1 Score=28.11 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=25.3
Q ss_pred cccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceecccccccc
Q 020974 268 SDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTNLSFGVL 317 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~~~~~~~ 317 (319)
-+...||.|++. -.|. .+ ....+|..||. +.-.++.++||
T Consensus 6 LeiL~CP~ck~~-L~~~-----~~---~~~LiC~~cg~-~YPI~dGIPvm 45 (69)
T 2pk7_A 6 LDILACPICKGP-LKLS-----AD---KTELISKGAGL-AYPIRDGIPVM 45 (69)
T ss_dssp GGTCCCTTTCCC-CEEC-----TT---SSEEEETTTTE-EEEEETTEECC
T ss_pred HhheeCCCCCCc-CeEe-----CC---CCEEEcCCCCc-EecCcCCeeee
Confidence 366899999984 2331 11 24578999984 44556666665
No 41
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=56.38 E-value=4.2 Score=31.05 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=22.8
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 308 (319)
..+.||.||...+. |.+ +-++.|..||..|-
T Consensus 35 ~ky~CpfCgk~~vk-----R~a----~GIW~C~~Cg~~~A 65 (92)
T 3iz5_m 35 SKYFCEFCGKFAVK-----RKA----VGIWGCKDCGKVKA 65 (92)
T ss_dssp SCBCCTTTCSSCBE-----EEE----TTEEECSSSCCEEE
T ss_pred ccccCcccCCCeeE-----ecC----cceEEcCCCCCEEe
Confidence 45899999998643 222 45689999998764
No 42
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=54.81 E-value=7.2 Score=27.99 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=25.6
Q ss_pred cccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceecccccccc
Q 020974 268 SDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTNLSFGVL 317 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~~~~~~~ 317 (319)
-+...||.|++. -.|.. + ....+|..|| +|.-.++.++||
T Consensus 6 L~iL~CP~ck~~-L~~~~-----~---~~~LiC~~cg-~~YPI~dGIPvm 45 (68)
T 2jr6_A 6 LDILVCPVTKGR-LEYHQ-----D---KQELWSRQAK-LAYPIKDGIPYM 45 (68)
T ss_dssp SCCCBCSSSCCB-CEEET-----T---TTEEEETTTT-EEEEEETTEECC
T ss_pred hhheECCCCCCc-CeEeC-----C---CCEEEcCCCC-cEecCCCCeeee
Confidence 366899999983 33311 1 2447899998 444556666665
No 43
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=54.67 E-value=4.3 Score=29.60 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=22.8
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 308 (319)
..+.||.||...+. |.+ +-+..|..|+..|-
T Consensus 25 ~ky~C~fCgk~~vk-----R~a----~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 25 ARYDCSFCGKKTVK-----RGA----AGIWTCSCCKKTVA 55 (72)
T ss_dssp SCBCCSSCCSSCBS-----BCS----SSCBCCSSSCCCCC
T ss_pred cCccCCCCCCceeE-----ecC----CCeEECCCCCCEEe
Confidence 46899999987643 333 45689999998764
No 44
>2gut_A ARC/mediator, positive cofactor 2 glutamine/Q- rich-associated protein; KIX, 3 helical bundle, transcription; NMR {Homo sapiens}
Probab=54.10 E-value=22 Score=26.16 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=39.6
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhchhhhhhhhhccCChHHHHHHHHHHHHHHhccCchhHHHHHHHHHHhcC
Q 020974 134 NDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNIS 204 (319)
Q Consensus 134 ~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~d~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~~NLk 204 (319)
....|++++.-+-+++....... . .=|.++|.++|.+. .+..+|-..+-.|+..++
T Consensus 11 s~~FRq~vi~~i~~a~~~~G~~~----------~----k~a~emEnhvF~Ka-~tkdEYL~lvarli~h~r 66 (77)
T 2gut_A 11 STAFRQKLVSQIEDAMRKAGVAH----------S----KSSKDMESHVFLKA-KTRDEYLSLVARLIIHFR 66 (77)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCCC----------S----SCHHHHHHHHHHHC-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhHHHHHHhCCCC----------C----CCHHHHHHHHHhcc-CcccchHHHHHHHHHHHH
Confidence 36889999999999998622111 1 12789999999874 334689877777776665
No 45
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=53.98 E-value=6.5 Score=28.70 Aligned_cols=31 Identities=26% Similarity=0.530 Sum_probs=22.2
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 308 (319)
..+.||.||.....-+ + +-++.|..|+..|-
T Consensus 26 ~ky~C~fCgk~~vkR~-----a----~GIW~C~~C~~~~A 56 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRA-----S----TSIWVCGHCGYKIA 56 (73)
T ss_pred cCccCCCCCCceeEEE-----E----eEEEECCCCCcEEE
Confidence 5689999997544311 1 56799999998753
No 46
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=53.87 E-value=6.9 Score=28.09 Aligned_cols=40 Identities=10% Similarity=0.277 Sum_probs=25.5
Q ss_pred cccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceecccccccc
Q 020974 268 SDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTNLSFGVL 317 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~~~~~~~ 317 (319)
-+...||.|++. -.|.. + ....+|..|| .|.-.++.++||
T Consensus 6 L~iL~CP~ck~~-L~~~~-----~---~~~LiC~~cg-~~YPI~dGIPvm 45 (68)
T 2hf1_A 6 LEILVCPLCKGP-LVFDK-----S---KDELICKGDR-LAFPIKDGIPMM 45 (68)
T ss_dssp EEECBCTTTCCB-CEEET-----T---TTEEEETTTT-EEEEEETTEECC
T ss_pred hhheECCCCCCc-CeEeC-----C---CCEEEcCCCC-cEecCCCCeeee
Confidence 356899999984 33311 1 2347899998 444556666665
No 47
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=52.76 E-value=7.5 Score=28.05 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=25.3
Q ss_pred cccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceecccccccc
Q 020974 268 SDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTNLSFGVL 317 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~~~~~~~ 317 (319)
-+...||.|++. -.|.. + ....+|..||.. .-.++.++||
T Consensus 6 L~iL~CP~ck~~-L~~~~-----~---~~~LiC~~cg~~-YPI~dGIPvm 45 (70)
T 2js4_A 6 LDILVCPVCKGR-LEFQR-----A---QAELVCNADRLA-FPVRDGVPIM 45 (70)
T ss_dssp CCCCBCTTTCCB-EEEET-----T---TTEEEETTTTEE-EEEETTEECC
T ss_pred hhheECCCCCCc-CEEeC-----C---CCEEEcCCCCce-ecCCCCeeee
Confidence 366899999993 33311 1 234789999844 4556666665
No 48
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=52.36 E-value=1.7 Score=35.77 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=21.4
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcc
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYW 307 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 307 (319)
.-..|+.|++.++.+.. +.-..|..|..||.+-
T Consensus 102 ~yVlC~~C~sPdT~l~k------~~r~~~l~C~ACGa~~ 134 (139)
T 3cw2_K 102 AYVECSTCKSLDTILKK------EKKSWYIVCLACGAQT 134 (139)
T ss_dssp CCSSCCSSSSSCCCSCS------SCSTTTSSCCC-----
T ss_pred HeeECCCCCCcCcEEEE------eCCeEEEEecCCCCCC
Confidence 44789999999988733 2235788999999753
No 49
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=51.82 E-value=7 Score=28.38 Aligned_cols=39 Identities=10% Similarity=0.313 Sum_probs=22.7
Q ss_pred ccccCCCCcceEE-------EEeccCCCCCceeEEEccCCCCccee
Q 020974 271 YECGRCGHNKISY-------QHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 271 ~~C~~C~~~~~~~-------q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
..||-||+..... .....+.--+....+.|..||..|-.
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 4899999864432 11111111123357899999988753
No 50
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=51.81 E-value=4.6 Score=32.12 Aligned_cols=31 Identities=19% Similarity=0.512 Sum_probs=21.3
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 308 (319)
..+.||.||... ..-. + +-.+.|..||..|-
T Consensus 59 akytCPfCGk~~-vKR~----a----vGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 59 EDHACPNCGEDR-VDRQ----G----TGIWQCSYCDYKFT 89 (116)
T ss_dssp SCEECSSSCCEE-EEEE----E----TTEEEETTTCCEEE
T ss_pred cCCcCCCCCCce-eEec----C----ceeEECCCCCCEEE
Confidence 468999999743 3211 1 24789999998853
No 51
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=51.40 E-value=6.4 Score=30.33 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=30.4
Q ss_pred ccccccCCCCcceEE-EEe-------------cc-----CCCCCceeEEEccCCCCcceecccccccc
Q 020974 269 DIYECGRCGHNKISY-QHS-------------SI-----LDDYNLTRHVTCLNCNQYWVSTNLSFGVL 317 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q-------------~r-----sade~mt~f~~C~~C~~~w~~~~~~~~~~ 317 (319)
+...||.|++ .-.| ..+ .+ ..+|.+....+|..||. |.-.++.++||
T Consensus 7 dILaCP~cK~-pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~-~YPI~dGIPvm 72 (97)
T 2k5r_A 7 HLLCSPDTRQ-PLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQ-VFRIEDSIPVL 72 (97)
T ss_dssp SSCCCCTTSS-CCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCE-EEEEETTEEEC
T ss_pred hheECCCCCC-cccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCC-CccccCCCccc
Confidence 6679999998 4444 321 11 23456677889999985 44556666665
No 52
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=51.31 E-value=5.2 Score=30.54 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=22.5
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~ 308 (319)
..+.||.||...+. |.+ +-++.|..|+..|-
T Consensus 35 ~ky~CpfCgk~~vk-----R~a----~GIW~C~~C~~~~A 65 (92)
T 3izc_m 35 ARYDCSFCGKKTVK-----RGA----AGIWTCSCCKKTVA 65 (92)
T ss_dssp SCCCCSSSCSSCCE-----EEE----TTEEECTTTCCEEE
T ss_pred cCCcCCCCCCceee-----ecc----cceEEcCCCCCEEe
Confidence 45899999987543 222 45689999998764
No 53
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=50.71 E-value=4.3 Score=31.61 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=22.6
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCccee
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
..+.||.||...+. |.+ +-++.|..||..|-.
T Consensus 35 aky~CpfCgk~~vK-----R~a----~GIW~C~kCg~~~AG 66 (103)
T 4a17_Y 35 AKYGCPFCGKVAVK-----RAA----VGIWKCKPCKKIIAG 66 (103)
T ss_dssp SCEECTTTCCEEEE-----EEE----TTEEEETTTTEEEEC
T ss_pred cCCCCCCCCCceee-----ecC----cceEEcCCCCCEEeC
Confidence 45899999986533 222 456899999987643
No 54
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.29 E-value=4 Score=27.74 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=16.9
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCc
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 306 (319)
+.+.|++||.+. | +....|..||+.
T Consensus 13 ~k~iCpkC~a~~------------~-~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATN------------P-WGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEE------------C-TTCSSCSSSSSC
T ss_pred CCccCCCCCCcC------------C-CCceecCCCCCc
Confidence 557888888861 1 334578888876
No 55
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=45.33 E-value=2.8 Score=27.85 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=24.4
Q ss_pred cccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceeccc
Q 020974 270 IYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTNL 312 (319)
Q Consensus 270 ~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~~ 312 (319)
...|..|+..++. ++ |.+.++- +.|+.||-+|+--.-
T Consensus 4 ~~~C~~C~tt~Tp-~W--R~gp~G~---~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 4 ARECVNCGATATP-LW--RRDRTGH---YLCNACGLYHKMNGQ 40 (46)
T ss_dssp SCCCTTTCCCCCS-SC--BCCTTCC---CBCSHHHHHHHHTCS
T ss_pred CCCCCCcCCCCCC-cC--ccCCCCC---ccchHHHHHHHHcCC
Confidence 4579999987643 23 3343332 699999999876443
No 56
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=45.22 E-value=16 Score=35.15 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=27.2
Q ss_pred ccccccCCCCcceEEEEeccC--CCCCceeEEEccCCCCccee
Q 020974 269 DIYECGRCGHNKISYQHSSIL--DDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rs--ade~mt~f~~C~~C~~~w~~ 309 (319)
-...||.||..-.+-...+.- =.|-+-.-+.|.+||++...
T Consensus 219 ~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ne 261 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNE 261 (404)
T ss_dssp EEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEE
T ss_pred ecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcccc
Confidence 345799999865543443332 34555566799999998754
No 57
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=44.50 E-value=9.2 Score=25.50 Aligned_cols=31 Identities=23% Similarity=0.615 Sum_probs=17.0
Q ss_pred cccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcc
Q 020974 270 IYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYW 307 (319)
Q Consensus 270 ~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 307 (319)
.|.|.+||..-.. .+-.+..-+.|..||.+-
T Consensus 3 iY~C~rCg~~fs~-------~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 3 VYRCGKCWKTFTD-------EQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp --CCCCTTTTCCC-------CCSCCCSSSCCTTTCCSC
T ss_pred EEEeeccCCCccH-------HHHhhCCCcccCccCcEE
Confidence 4678888873211 111244667788888763
No 58
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=43.71 E-value=13 Score=29.55 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=22.9
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCCCcceec
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCNQYWVST 310 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~~~w~~~ 310 (319)
++.-||.||+ ..| .. ..++....|.|..||+.....
T Consensus 3 ~~~FCp~Cgn--lL~~~~----~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 3 TFRFCRDCNN--MLYPRE----DKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CCCBCSSSCC--BCEEEE----ETTTTEEEEECSSSSCEEECS
T ss_pred CCCcccccCc--cCcccc----cCcCCCCEEECCcCCCeeecC
Confidence 4567999986 233 21 123446778999999876643
No 59
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=42.47 E-value=11 Score=30.68 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=24.1
Q ss_pred cccccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceec
Q 020974 266 IVSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVST 310 (319)
Q Consensus 266 ~~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~ 310 (319)
..+++.-||.||+= .| .+...+.-...|.|..||+.....
T Consensus 20 ~~~~~~FCPeCgNm--L~---pked~~~~~l~~~CrtCgY~~~~~ 59 (133)
T 3qt1_I 20 HMTTFRFCRDCNNM--LY---PREDKENNRLLFECRTCSYVEEAG 59 (133)
T ss_dssp --CCCCBCTTTCCB--CB---CCBCTTTCCBCCBCSSSCCBCCCS
T ss_pred cccCCeeCCCCCCE--ee---ECccCCCceeEEECCCCCCcEEcC
Confidence 45566779999972 22 222222235678999999877543
No 60
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=42.19 E-value=9.7 Score=23.61 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=10.7
Q ss_pred eeEEEccCCCCcce
Q 020974 295 TRHVTCLNCNQYWV 308 (319)
Q Consensus 295 t~f~~C~~C~~~w~ 308 (319)
..||.|..|||--.
T Consensus 4 ~~fY~C~~CGnive 17 (36)
T 1dxg_A 4 GDVYKCELCGQVVK 17 (36)
T ss_dssp TCEEECTTTCCEEE
T ss_pred ccEEEcCCCCcEEE
Confidence 46899999987544
No 61
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=42.02 E-value=12 Score=29.21 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=21.5
Q ss_pred cccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceec
Q 020974 270 IYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVST 310 (319)
Q Consensus 270 ~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~ 310 (319)
+.-||.||+- .| .+..++.-...+.|..||+.+...
T Consensus 4 m~FCp~Cgn~--L~---~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 4 FQYCIECNNM--LY---PREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCCSSSCCC--CE---ECCCTTTCCCCEECSSSCCEECCS
T ss_pred ceeCcCCCCE--ee---EcccCCCCeeEEECCCCCCeEEcC
Confidence 4569999873 22 112222234567899999877654
No 62
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=41.57 E-value=15 Score=26.22 Aligned_cols=41 Identities=12% Similarity=0.168 Sum_probs=26.2
Q ss_pred ccccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceecccccccc
Q 020974 267 VSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTNLSFGVL 317 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~~~~~~~ 317 (319)
--+...||.|++. -.|.. + ....+|..|| ++.-.++.++||
T Consensus 7 LLeiL~CP~ck~~-L~~~~-----~---~g~LvC~~c~-~~YPI~dGIPvm 47 (67)
T 2jny_A 7 LLEVLACPKDKGP-LRYLE-----S---EQLLVNERLN-LAYRIDDGIPVL 47 (67)
T ss_dssp GTCCCBCTTTCCB-CEEET-----T---TTEEEETTTT-EEEEEETTEECC
T ss_pred HHHHhCCCCCCCc-CeEeC-----C---CCEEEcCCCC-ccccCCCCEeee
Confidence 3467899999993 34411 1 1236899998 455556666665
No 63
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=40.64 E-value=14 Score=33.32 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=23.8
Q ss_pred cccccccccCCCCcceEEEEec-cCCCCCceeEEEccCCCCc-ce
Q 020974 266 IVSDIYECGRCGHNKISYQHSS-ILDDYNLTRHVTCLNCNQY-WV 308 (319)
Q Consensus 266 ~~t~~~~C~~C~~~~~~~q~q~-rsade~mt~f~~C~~C~~~-w~ 308 (319)
.....|.|.+||+. .|+-|+ ..-.+|. .|.+|+.+ |.
T Consensus 130 ~~~~~f~C~~C~~~--~~v~~~~~~~~~P~----~Cp~C~~~~f~ 168 (279)
T 1ltl_A 130 IVKAVFECRGCMRH--HAVTQSTNMITEPS----LCSECGGRSFR 168 (279)
T ss_dssp EEEEEEEETTTCCE--EEEECSSSSCCCCS----CCTTTCCCCEE
T ss_pred EEEEEEEcCCCCCE--EEEEecCCcccCCC----cCCCCCCCCcE
Confidence 34467999999964 454443 2334443 89999976 54
No 64
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=40.59 E-value=16 Score=35.10 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=25.1
Q ss_pred ccccCCCCcceEEEEeccC--CCCCceeEEEccCCCCccee
Q 020974 271 YECGRCGHNKISYQHSSIL--DDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 271 ~~C~~C~~~~~~~q~q~rs--ade~mt~f~~C~~C~~~w~~ 309 (319)
..|+.||++..+-.+-++- =.|-+-.-+.|.+||.+...
T Consensus 13 s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~e 53 (404)
T 2qkd_A 13 SLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTE 53 (404)
T ss_dssp EECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEE
T ss_pred ccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchhe
Confidence 4699999655543444432 23445566799999988764
No 65
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.17 E-value=19 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=19.1
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcc
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYW 307 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 307 (319)
..-.||+||..- +..+. . .-..|..||.+.
T Consensus 18 ~~k~CP~CG~~~--fm~~~--~-----~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGV--FMADH--G-----DRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSC--EEEEC--S-----SEEECSSSCCEE
T ss_pred ecccCCCCCCce--EEecC--C-----CeEECCCCCCEE
Confidence 455799999842 32221 1 236999999763
No 66
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=38.83 E-value=9 Score=24.46 Aligned_cols=13 Identities=31% Similarity=0.764 Sum_probs=8.8
Q ss_pred ccccccccCCCCc
Q 020974 267 VSDIYECGRCGHN 279 (319)
Q Consensus 267 ~t~~~~C~~C~~~ 279 (319)
..+.+.|++||..
T Consensus 6 ~~~~~~C~~C~~~ 18 (39)
T 2i5o_A 6 AEDQVPCEKCGSL 18 (39)
T ss_dssp CCCEEECTTTCCE
T ss_pred cCCCcccccccCc
Confidence 4466778888764
No 67
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=38.24 E-value=3.6 Score=26.92 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=22.0
Q ss_pred cccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceecc
Q 020974 272 ECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTN 311 (319)
Q Consensus 272 ~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~ 311 (319)
.|..|+..++. +++ .+.++- +.|+.||-+|+--+
T Consensus 3 ~C~~C~tt~Tp-~WR--~gp~G~---~LCNaCGl~~k~~~ 36 (43)
T 2vut_I 3 TCTNCFTQTTP-LWR--RNPEGQ---PLCNACGLFLKLHG 36 (43)
T ss_dssp CCSSSCCCCCS-CCE--ECTTSC---EECHHHHHHHHHHS
T ss_pred cCCccCCCCCC-ccc--cCCCCC---cccHHHHHHHHHhC
Confidence 68899887654 332 233332 69999999887543
No 68
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=37.58 E-value=13 Score=21.33 Aligned_cols=14 Identities=14% Similarity=0.662 Sum_probs=11.7
Q ss_pred HHHHHHHHhhcccc
Q 020974 73 YDLISSWRDMCWDV 86 (319)
Q Consensus 73 k~lv~~WK~~v~~~ 86 (319)
-.+|..||+.|++.
T Consensus 12 lemitawkkfveek 25 (28)
T 1nwd_B 12 LEMITAWKKFVEEK 25 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 46899999999764
No 69
>1kdx_A CBP; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Mus musculus} SCOP: a.12.1.1 PDB: 1sb0_A 2agh_B 2kwf_A
Probab=36.92 E-value=59 Score=24.03 Aligned_cols=65 Identities=22% Similarity=0.231 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHHHhhhhhhchhhhhhhhhccCChHHHHHHHHHHHHHHhccCchhHHHHHHHHHHhc
Q 020974 134 NDSFREIVREKLYDALSKVSDEAADKVTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNI 203 (319)
Q Consensus 134 ~d~vR~k~r~~L~~aL~~~~~e~~~~~~~~~~~~~d~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~~NL 203 (319)
...+|+..++-|..++....+ +.. ..+ ..-.+....|..+|..+|....+ ..+|=.-+...+.++
T Consensus 11 t~~lR~hlv~Klv~aI~P~pd--p~a-~~d-~rm~~l~~yArkvE~~~ye~A~s-rdeYY~llA~kiyki 75 (81)
T 1kdx_A 11 TQDLRSHLVHKLVQAIFPTPD--PAA-LKD-RRMENLVAYAKKVEGDMYESANS-RDEYYHLLAEKIYKI 75 (81)
T ss_dssp CHHHHHHHHHHHHHHHSCCSS--GGG-GGS-HHHHHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCC--hhh-hhh-HHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHH
Confidence 478999999999999875331 111 111 11123567899999999986433 356755555455544
No 70
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=36.59 E-value=6.2 Score=26.54 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=23.3
Q ss_pred ccccccCCCCcceEE-EEe-ccCCCCCceeEEEccCCCCcceec
Q 020974 269 DIYECGRCGHNKISY-QHS-SILDDYNLTRHVTCLNCNQYWVST 310 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q-~rsade~mt~f~~C~~C~~~w~~~ 310 (319)
..|.|+.||..=... .++ +..++ .-|.|..||..+...
T Consensus 13 k~~~C~~C~k~F~~~~~l~~~H~~~----k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQLFDPMT----GTFRCTFCHTEVEED 52 (62)
T ss_dssp SEEECSSSCCEEEHHHHHHHEETTT----TEEBCSSSCCBCEEC
T ss_pred CCccCCCCCchhccHHHhHhhcCCC----CCEECCCCCCccccC
Confidence 459999999743322 222 22222 237999999876543
No 71
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=33.95 E-value=13 Score=21.16 Aligned_cols=9 Identities=33% Similarity=1.125 Sum_probs=7.3
Q ss_pred CCCCcceec
Q 020974 302 NCNQYWVST 310 (319)
Q Consensus 302 ~C~~~w~~~ 310 (319)
+||+.|-.+
T Consensus 17 ncgnswacs 25 (27)
T 2hgo_A 17 NCGNSWACS 25 (27)
T ss_dssp SSSCEEECS
T ss_pred CcCCccccc
Confidence 799999765
No 72
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=32.98 E-value=3.5 Score=27.01 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=20.2
Q ss_pred ccccCCCCcceEE-EE----eccCCCCCceeEEEccCCCCcce
Q 020974 271 YECGRCGHNKISY-QH----SSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 271 ~~C~~C~~~~~~~-q~----q~rsade~mt~f~~C~~C~~~w~ 308 (319)
|.|+.|+..=... .+ ++...+. -|.|..||..+.
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~----~~~C~~C~~~f~ 41 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEK----PYPCGLCNRAFT 41 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSC----SEECTTTCCEES
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCC----CccCCCCCCccC
Confidence 7899998754432 22 2222222 278999997654
No 73
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=32.16 E-value=8.5 Score=26.95 Aligned_cols=24 Identities=25% Similarity=0.666 Sum_probs=16.1
Q ss_pred ccccccccCCCCcceEEEEeccCCCCCceeEEEccCCC
Q 020974 267 VSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCN 304 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~ 304 (319)
......|+.||.-+ ..+..|.+||
T Consensus 27 ~p~l~~c~~cGe~~--------------~~H~vc~~CG 50 (60)
T 3v2d_5 27 PPTLVPCPECKAMK--------------PPHTVCPECG 50 (60)
T ss_dssp CCCCEECTTTCCEE--------------CTTSCCTTTC
T ss_pred CCceeECCCCCCee--------------cceEEcCCCC
Confidence 34678999999822 2234688888
No 74
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=31.51 E-value=11 Score=26.42 Aligned_cols=26 Identities=27% Similarity=0.648 Sum_probs=18.0
Q ss_pred cccccccccCCCCcceEEEEeccCCCCCceeEEEccCCCC
Q 020974 266 IVSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQ 305 (319)
Q Consensus 266 ~~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~ 305 (319)
.......|+.||.- ......|.+||+
T Consensus 26 ~~p~l~~c~~cG~~--------------~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECPQCHGK--------------KLSHHICPNCGY 51 (60)
T ss_dssp CCCCCEECTTTCCE--------------ECTTBCCTTTCB
T ss_pred cCCCceECCCCCCE--------------eCCceEcCCCCc
Confidence 45577899999984 223457888884
No 75
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=31.47 E-value=24 Score=35.19 Aligned_cols=19 Identities=32% Similarity=0.912 Sum_probs=11.5
Q ss_pred CCCceeEEEccCCCCcceec
Q 020974 291 DYNLTRHVTCLNCNQYWVST 310 (319)
Q Consensus 291 de~mt~f~~C~~C~~~w~~~ 310 (319)
|-...-...|. ||++|-..
T Consensus 635 ~~~~~~~~~c~-~~~~~g~~ 653 (699)
T 4gl2_A 635 DYQINGEIICK-CGQAWGTM 653 (699)
T ss_dssp -----CEEECS-SSCEEEEE
T ss_pred ccccCCcEEee-cCchhhHH
Confidence 33345678899 99999753
No 76
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=31.32 E-value=19 Score=27.36 Aligned_cols=14 Identities=36% Similarity=1.018 Sum_probs=8.5
Q ss_pred ccccccCCCCcceEE
Q 020974 269 DIYECGRCGHNKISY 283 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~ 283 (319)
--|+|+ |+++-++|
T Consensus 47 RFFkC~-C~~Rt~sl 60 (92)
T 2kwq_A 47 RFFKCP-CGNRTISL 60 (92)
T ss_dssp EEEECT-TSCEEEES
T ss_pred EEEECC-CCCceeEe
Confidence 456665 66666665
No 77
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=30.30 E-value=27 Score=23.82 Aligned_cols=39 Identities=18% Similarity=0.459 Sum_probs=25.0
Q ss_pred ccccccccCCCCcceEEEEeccCCCCCceeEEEcc--CCCCcceecccccccc
Q 020974 267 VSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCL--NCNQYWVSTNLSFGVL 317 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~--~C~~~w~~~~~~~~~~ 317 (319)
--+...||.|++. -.|.. ...+|. .||..|- -++.++||
T Consensus 7 lL~iL~CP~c~~~-L~~~~----------~~L~C~~~~c~~~YP-I~dGIPvl 47 (56)
T 2kpi_A 7 LLEILACPACHAP-LEERD----------AELICTGQDCGLAYP-VRDGIPVL 47 (56)
T ss_dssp CTTSCCCSSSCSC-EEEET----------TEEEECSSSCCCEEE-EETTEECC
T ss_pred HHhheeCCCCCCc-ceecC----------CEEEcCCcCCCcEEe-eECCEeee
Confidence 3467899999994 23311 346899 8986554 45555554
No 78
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=30.22 E-value=3.4 Score=26.75 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=19.7
Q ss_pred ccccCCCCcceEE-EE----eccCCCCCceeEEEccCCCCcce
Q 020974 271 YECGRCGHNKISY-QH----SSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 271 ~~C~~C~~~~~~~-q~----q~rsade~mt~f~~C~~C~~~w~ 308 (319)
|.|+.||..=... .+ ++...+.| |.|..||..+.
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~----~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRP----YHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCC----EECSSSSCEES
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCC----ccCCCCCchhc
Confidence 6788888754332 22 22223322 78999987654
No 79
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=29.20 E-value=20 Score=24.41 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=21.0
Q ss_pred ccccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcc
Q 020974 267 VSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYW 307 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 307 (319)
.-....||+||..- .+..+ . ..+.|..||.+.
T Consensus 15 ~~~~~fCPkCG~~~-~ma~~---~-----dr~~C~kCgyt~ 46 (55)
T 2k4x_A 15 VRKHRFCPRCGPGV-FLAEH---A-----DRYSCGRCGYTE 46 (55)
T ss_dssp CCSSCCCTTTTTTC-CCEEC---S-----SEEECTTTCCCE
T ss_pred EEccccCcCCCCce-eEecc---C-----CEEECCCCCCEE
Confidence 33568999999843 22211 1 267999999874
No 80
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=28.71 E-value=32 Score=26.58 Aligned_cols=38 Identities=18% Similarity=0.444 Sum_probs=22.2
Q ss_pred ccccccCCCCcceEE-EEeccC---CCCCceeEEEccCCCCc
Q 020974 269 DIYECGRCGHNKISY-QHSSIL---DDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rs---ade~mt~f~~C~~C~~~ 306 (319)
.-.-|..|+++.-.- +-++-. .+|-.|.--.|.+|+|-
T Consensus 25 Nf~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~nC~Hv 66 (106)
T 2jox_A 25 NFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHV 66 (106)
T ss_dssp TBCCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred echhhhhcCCCceEEEeccccccCCCcEEEEEEEecCCCceE
Confidence 445788999888443 444322 22334444578888754
No 81
>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A
Probab=28.31 E-value=32 Score=28.29 Aligned_cols=21 Identities=24% Similarity=0.710 Sum_probs=15.4
Q ss_pred CCCCCceeEEEccCCCCccee
Q 020974 289 LDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 289 sade~mt~f~~C~~C~~~w~~ 309 (319)
-.|-.+.-.+.|.+||+.|-.
T Consensus 61 f~d~~~~g~I~C~~Cgq~WG~ 81 (145)
T 3eqt_A 61 FKDWKPGGVISCRNCGEVWGL 81 (145)
T ss_dssp CSSEEEEEEEEETTTCCEEEE
T ss_pred cccccCCcEEEchhhChhhHh
Confidence 344445677889999999964
No 82
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=28.03 E-value=5.6 Score=27.28 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=21.8
Q ss_pred cccccCCCCcceEE-EE----eccCCCCCceeEEEccCCCCcce
Q 020974 270 IYECGRCGHNKISY-QH----SSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 270 ~~~C~~C~~~~~~~-q~----q~rsade~mt~f~~C~~C~~~w~ 308 (319)
.|.|..||..=... .+ .+..++-| |.|..||..+.
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp----~~C~~C~k~F~ 43 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRP----RSCPECGKCFR 43 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCC----EECTTTCCEES
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcC----eECCCCCCCcC
Confidence 38899999753332 22 22234444 79999998764
No 83
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.36 E-value=18 Score=28.22 Aligned_cols=73 Identities=16% Similarity=0.348 Sum_probs=40.1
Q ss_pred cCCCChhhhhcCChh-hcCchH-HHHHhhhhhhchhhhhcCCCCccccccccccccccccCCCCcceEEEEeccCCCCCc
Q 020974 217 LGHVKPETIINMSAK-EMASDK-IQLWNHHLDKDGALVTGHIFPVGLSRKIIVSDIYECGRCGHNKISYQHSSILDDYNL 294 (319)
Q Consensus 217 ~G~i~p~~lv~Ms~e-Elas~e-~k~~~~~~~~~e~l~~~q~~~~~~~~~~~~t~~~~C~~C~~~~~~~q~q~rsade~m 294 (319)
.+.+++.+|+.+-.- .+...+ .-..-+.+ . ++++.. + .. -..-.+.|.+||.. | .+.+
T Consensus 22 ~~plta~ei~~~l~i~~~~~ke~Vy~hLeHI-a-ksl~r~-----g--~~-L~v~p~~C~~CG~~---F-------~~~~ 81 (105)
T 2gmg_A 22 EGDYSPSELARILDMRGKGSKKVILEDLKVI-S-KIAKRE-----G--MV-LLIKPAQCRKCGFV---F-------KAEI 81 (105)
T ss_dssp TSCBCTTHHHHSSCCCSSCCHHHHHHHHHHH-H-HHHTTT-----T--EE-EEECCCBBTTTCCB---C-------CCCS
T ss_pred cCCCCHHHHHHHhCCCCCChHHHHHHHHHHH-H-HHHhcC-----C--cE-EEEECcChhhCcCe---e-------cccC
Confidence 456888888665433 234444 33333333 1 223211 1 11 34456899999986 3 1233
Q ss_pred eeEEEccCCCCccee
Q 020974 295 TRHVTCLNCNQYWVS 309 (319)
Q Consensus 295 t~f~~C~~C~~~w~~ 309 (319)
..-..|..|+-.|-.
T Consensus 82 ~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 82 NIPSRCPKCKSEWIE 96 (105)
T ss_dssp SCCSSCSSSCCCCBC
T ss_pred CCCCCCcCCCCCccC
Confidence 333689999988853
No 84
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=27.07 E-value=13 Score=30.62 Aligned_cols=30 Identities=23% Similarity=0.620 Sum_probs=19.8
Q ss_pred cccccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCc
Q 020974 266 IVSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 266 ~~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 306 (319)
..+=.|.|..||+. |. .+.....|..||+.
T Consensus 128 ~~~~~y~C~~Cg~~---~~--------~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 128 VIKWRYVCIGCGRK---FS--------TLPPGGVCPDCGSK 157 (165)
T ss_dssp CCCCCEEESSSCCE---ES--------SCCGGGBCTTTCCB
T ss_pred cccEEEECCCCCCc---cc--------CCCCCCcCCCCCCc
Confidence 45567999999973 20 11223489999986
No 85
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.06 E-value=7.1 Score=27.03 Aligned_cols=37 Identities=16% Similarity=0.471 Sum_probs=22.8
Q ss_pred cccccccCCCCcceEE-EE----eccCCCCCceeEEEccCCCCcce
Q 020974 268 SDIYECGRCGHNKISY-QH----SSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~-q~----q~rsade~mt~f~~C~~C~~~w~ 308 (319)
...|.|+.|+..=... .+ ++...+. -|.|..|+..+.
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~----~~~C~~C~~~f~ 57 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEK----PYKCDECGKAFI 57 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCSC----SEECSSSCCEES
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCCc----CeeCCCCCCccC
Confidence 3569999999754433 22 2222222 379999997764
No 86
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=26.83 E-value=6.6 Score=27.84 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=24.3
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceecc
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTN 311 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~ 311 (319)
....|-.||-.++. ++ |.+.++- +.|+.||-.|+--+
T Consensus 6 ~~~~C~~C~tt~Tp-~W--R~gp~G~---~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 6 AGTSCANCQTTTTT-LW--RRNANGD---PVCNACGLYYKLHN 42 (63)
T ss_dssp TTCCCTTTCCSCCS-SC--CCCTTSC---CCCHHHHHHHHHHS
T ss_pred CCCcCCCcCCCCCC-cc--CCCCCCC---chhhHHHHHHHHcC
Confidence 34579999987643 33 3343332 58999998887543
No 87
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.82 E-value=68 Score=24.10 Aligned_cols=32 Identities=19% Similarity=0.487 Sum_probs=22.4
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCC
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQ 305 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~ 305 (319)
....|+.|+......+.| -+|....+|..|+-
T Consensus 44 ~~~~C~~C~G~G~~~~~~-----G~~~~~~~C~~C~G 75 (104)
T 2ctt_A 44 KVQHCHYCGGSGMETINT-----GPFVMRSTCRRCGG 75 (104)
T ss_dssp CCEECSSSSSSCEEEEEE-----TTEEEEEECSSSSS
T ss_pred CCccCCCCCCCEEEEEEe-----CCEEEEEECCcCCC
Confidence 356899999988665333 25667778888864
No 88
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.81 E-value=23 Score=18.48 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=7.8
Q ss_pred EEccCCCCcce
Q 020974 298 VTCLNCNQYWV 308 (319)
Q Consensus 298 ~~C~~C~~~w~ 308 (319)
|.|..||..+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 67888887654
No 89
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=26.53 E-value=26 Score=28.35 Aligned_cols=39 Identities=13% Similarity=0.315 Sum_probs=21.6
Q ss_pred ccccccccCCCCcceEEEEeccCCCCCceeE-----------EEccCCCCc
Q 020974 267 VSDIYECGRCGHNKISYQHSSILDDYNLTRH-----------VTCLNCNQY 306 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~q~q~rsade~mt~f-----------~~C~~C~~~ 306 (319)
....+.|..||+.-..-... ..-|+.+.-+ +.|..||+.
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~-~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVK-DKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCT-TCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred cCCcEECCCCCCEEeccccc-ccccccccccccccccccccCCcCccccCC
Confidence 34578999998631110110 1233444444 569999976
No 90
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=26.35 E-value=20 Score=34.19 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=22.9
Q ss_pred cccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceecc
Q 020974 270 IYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVSTN 311 (319)
Q Consensus 270 ~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~~ 311 (319)
.+.|..||++...|-+. . .--.|..||.+|....
T Consensus 244 v~~C~~C~~~~~~~~~~----~----~~~~C~~cg~~~~~~G 277 (392)
T 3axs_A 244 IQYCFNCMNREVVTDLY----K----FKEKCPHCGSKFHIGG 277 (392)
T ss_dssp EEECTTTCCEEEECCGG----G----CCSBCTTTCSBCEEEE
T ss_pred EEECCCCCCeEeecCCC----C----CCCcCCCCCCccceec
Confidence 57899999877655111 1 1247999999887654
No 91
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.58 E-value=25 Score=18.42 Aligned_cols=11 Identities=18% Similarity=0.661 Sum_probs=7.8
Q ss_pred EEccCCCCcce
Q 020974 298 VTCLNCNQYWV 308 (319)
Q Consensus 298 ~~C~~C~~~w~ 308 (319)
|.|..||..+.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 67888887654
No 92
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.57 E-value=4 Score=28.03 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=22.0
Q ss_pred ccccccCCCCcceEE-EE----eccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNKISY-QH----SSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~----q~rsade~mt~f~~C~~C~~~w~ 308 (319)
..|.|+.|+..=... .+ ++...+. -|.|..|+..+.
T Consensus 13 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~----~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILVQHQRVHTGEK----PYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHGGGCSC----CEECSSSCCEES
T ss_pred CCccCCCCCCccCCHHHHHHHHHhcCCCC----CeECCCCCcccC
Confidence 469999999743332 22 1222232 379999998764
No 93
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=25.49 E-value=28 Score=32.42 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=17.2
Q ss_pred cccccCCCC--cceEEEEeccCCCCCceeEEEccCCC
Q 020974 270 IYECGRCGH--NKISYQHSSILDDYNLTRHVTCLNCN 304 (319)
Q Consensus 270 ~~~C~~C~~--~~~~~q~q~rsade~mt~f~~C~~C~ 304 (319)
...||.||+ ....+-. -+-.++|..||
T Consensus 21 ~~~Cp~C~~~~~~lv~D~--------~~G~~vC~~CG 49 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERF--------SEGDVVCALCG 49 (345)
T ss_dssp -CCCSSCCCSSCCEEEEG--------GGTEEEETTTC
T ss_pred CCcCCCCCCCCCceeEEC--------CCCcEEeCCCC
Confidence 458999997 3444321 12337999998
No 94
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.21 E-value=5.1 Score=27.27 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=22.2
Q ss_pred ccccccCCCCcceEE-EE----eccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNKISY-QH----SSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~----q~rsade~mt~f~~C~~C~~~w~ 308 (319)
..|.|..|+..=... .+ ++...+.| |.|..|+..+.
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~----~~C~~C~~~f~ 48 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCTDRP----FKCNYCSFDTK 48 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSCS----EECSSSSCEES
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCC----EeCCCCCCccC
Confidence 468999999753322 22 22223333 79999998764
No 95
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=25.14 E-value=21 Score=26.87 Aligned_cols=14 Identities=36% Similarity=0.911 Sum_probs=10.8
Q ss_pred eEEEccCCCCccee
Q 020974 296 RHVTCLNCNQYWVS 309 (319)
Q Consensus 296 ~f~~C~~C~~~w~~ 309 (319)
-+++|+.||..+++
T Consensus 20 d~iiClecGK~fK~ 33 (87)
T 2jsp_A 20 DHIVCLECGGSFKS 33 (87)
T ss_dssp SCEECTBTCCEESB
T ss_pred CceEecccchhhHH
Confidence 56889999987764
No 96
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J 4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Probab=24.89 E-value=16 Score=27.57 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=19.2
Q ss_pred CCHHHHHHHhcCCCChhhhhcC
Q 020974 207 ENQDFRRKVLLGHVKPETIINM 228 (319)
Q Consensus 207 kN~~Lr~~vl~G~i~p~~lv~M 228 (319)
+|.+++.+|++|.|+.++--.|
T Consensus 46 KnTEIWd~Ll~gkISIeEAKK~ 67 (104)
T 4ayb_Q 46 KNTEIWDNLLNGKISVDEAKRL 67 (104)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHH
T ss_pred hchHHHHHHHcCcccHHHHHHH
Confidence 4899999999999999886655
No 97
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=24.74 E-value=25 Score=24.30 Aligned_cols=26 Identities=31% Similarity=0.796 Sum_probs=18.5
Q ss_pred cccccccCCCCcceEEEEeccCCCCCceeEEEccCCCC
Q 020974 268 SDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQ 305 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~ 305 (319)
..-..|.+||.+ .|-+|- -+|-.||.
T Consensus 15 ktH~~CrRCG~~--syH~qK----------~~Ca~CGy 40 (57)
T 1vq8_1 15 TTHTKCRRCGEK--SYHTKK----------KVCSSCGF 40 (57)
T ss_dssp CCEEECTTTCSE--EEETTT----------TEETTTCT
T ss_pred CccccccccCCh--hhhccc----------cccccccC
Confidence 344689999986 564442 27999997
No 98
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.68 E-value=4.7 Score=27.79 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=23.9
Q ss_pred ccccccccCCCCcceEE-EE----eccCCCCCceeEEEccCCCCcce
Q 020974 267 VSDIYECGRCGHNKISY-QH----SSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~-q~----q~rsade~mt~f~~C~~C~~~w~ 308 (319)
....|.|+.|+..=... .+ ++...+.| |.|..||..+.
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~----~~C~~C~k~f~ 56 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKP----YRCNICGAQFN 56 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCS----EECTTTCCEES
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCC----EECCCCCchhC
Confidence 34579999999764433 22 22233333 79999998764
No 99
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=24.49 E-value=21 Score=23.55 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.0
Q ss_pred cccccccCCCCcceEE
Q 020974 268 SDIYECGRCGHNKISY 283 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~ 283 (319)
.+.+.||.||..+..|
T Consensus 28 P~dw~CP~Cg~~k~~F 43 (46)
T 6rxn_A 28 PDDWCCPVCGVSKDQF 43 (46)
T ss_dssp CTTCBCTTTCCBGGGE
T ss_pred CCCCcCcCCCCcHHHc
Confidence 3568999999988766
No 100
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=24.04 E-value=30 Score=30.88 Aligned_cols=32 Identities=19% Similarity=0.613 Sum_probs=19.2
Q ss_pred cccccCCCCcce-EEEEeccCCCCCceeEEEccCCCCcc
Q 020974 270 IYECGRCGHNKI-SYQHSSILDDYNLTRHVTCLNCNQYW 307 (319)
Q Consensus 270 ~~~C~~C~~~~~-~~q~q~rsade~mt~f~~C~~C~~~w 307 (319)
..-||.||+..- .|.-=+..| -| -|.+|+..+
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVa-----DF-~C~~C~Eey 66 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVA-----DF-YCNHCSEEF 66 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCC-----EE-ECTTTCCEE
T ss_pred CCcCCCCCChhhhhccCCCccc-----cc-ccCCcchhh
Confidence 467999999755 334333333 34 799998765
No 101
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=23.43 E-value=10 Score=27.52 Aligned_cols=36 Identities=17% Similarity=0.462 Sum_probs=23.5
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCccee
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVS 309 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~ 309 (319)
....|-.|+-.++. +++....+++ +.|+.||-+|+-
T Consensus 7 ~~~~C~nC~tt~Tp-~WRrg~~~~g----~LCNACGl~~~~ 42 (71)
T 2kae_A 7 KSFQCSNCSVTETI-RWRNIRSKEG----IQCNACFIYQRK 42 (71)
T ss_dssp -CCCCSSSCCSCCS-SCCCCSSSSC----CCSSHHHHHHHH
T ss_pred CCCcCCccCCCCCC-ccccCCCCCC----ccchHHHHHHHH
Confidence 45789999998754 3322113444 589999988864
No 102
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=23.03 E-value=23 Score=27.12 Aligned_cols=27 Identities=30% Similarity=0.644 Sum_probs=18.3
Q ss_pred cccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCc
Q 020974 268 SDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQY 306 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~ 306 (319)
..-..|++||.. .|-+|- .+|-.||..
T Consensus 14 KtH~lCrRCG~~--sfH~qK----------~~CgkCGYp 40 (97)
T 2zkr_2 14 KTHTLCRRCGSK--AYHLQK----------STCGKCGYP 40 (97)
T ss_dssp CCEECCTTTCSS--CEETTS----------CCBTTTCTT
T ss_pred CCCCcCCCCCCc--cCcCcc----------ccCcccCCc
Confidence 345689999987 442331 389999954
No 103
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=22.47 E-value=25 Score=18.48 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=7.5
Q ss_pred EEccCCCCcce
Q 020974 298 VTCLNCNQYWV 308 (319)
Q Consensus 298 ~~C~~C~~~w~ 308 (319)
|.|..||..+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 57888876653
No 104
>2gx1_A Neurotoxin MAGI-5; spider toxin; NMR {Synthetic}
Probab=22.36 E-value=25 Score=20.42 Aligned_cols=18 Identities=28% Similarity=0.704 Sum_probs=11.0
Q ss_pred eEEEccC----CCCcceecccccc
Q 020974 296 RHVTCLN----CNQYWVSTNLSFG 315 (319)
Q Consensus 296 ~f~~C~~----C~~~w~~~~~~~~ 315 (319)
+|+.|.+ || |..|-+-+-
T Consensus 5 tfw~ck~~keccg--wn~c~lg~c 26 (29)
T 2gx1_A 5 TFWKCKNKKECCG--WNACALGIC 26 (29)
T ss_dssp SSSCCSSTTSBSS--CCCBCSSSB
T ss_pred EEEEecCCccccc--cccccccee
Confidence 5677764 44 777765543
No 105
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=21.89 E-value=30 Score=28.13 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=20.3
Q ss_pred ccccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcc
Q 020974 267 VSDIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYW 307 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w 307 (319)
.+-.+.|+ ||.. |++...-..+. ..+.|.+|....
T Consensus 109 ~~f~~~Cr-CG~~---f~i~~~~l~~~--~~v~C~sCSl~~ 143 (155)
T 2l6l_A 109 HSFYLSCR-CGGK---YSVSKDEAEEV--SLISCDTCSLII 143 (155)
T ss_dssp TEEEEECS-SSCE---EEEETTHHHHC--CEEECSSSSCEE
T ss_pred cEEEEcCC-CCCe---EEecHHHhCCC--CEEECCCCceEE
Confidence 34458997 9965 53321111111 679999998543
No 106
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=21.77 E-value=63 Score=25.63 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHhcc----CchhHHHHHHHHHHhcCCCCCHHHHHHHhcCCCChhhhh
Q 020974 170 PIQVAILVESAMYEKWCR----SNGMYKFKYRCLLFNISDPENQDFRRKVLLGHVKPETII 226 (319)
Q Consensus 170 ~~~lA~~IE~~lf~~~~~----~~~~Yk~k~Rsl~~NLkd~kN~~Lr~~vl~G~i~p~~lv 226 (319)
...++..++..|+.+|.+ .....-+-+|.|..| ....|.|.+.-....|+.++|.
T Consensus 28 v~~F~~~L~~~L~~~y~~HW~P~~P~kGsayRcIrin--~~~Dp~l~~Aa~~sgl~~~~l~ 86 (120)
T 3e9v_A 28 LKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCIRIN--HKMDPIISRVASQIGLSQPQLH 86 (120)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCTTSTTTTHHHHCEECS--SSCCHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCCCceeEEEEC--CCCCHHHHHHHHHhCCCHHHHH
Confidence 457899999999999853 234445667777777 3467888888777777777664
No 107
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.65 E-value=31 Score=18.00 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=7.7
Q ss_pred EEccCCCCcce
Q 020974 298 VTCLNCNQYWV 308 (319)
Q Consensus 298 ~~C~~C~~~w~ 308 (319)
|.|..||..+.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 67888877653
No 108
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.49 E-value=18 Score=26.42 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=23.8
Q ss_pred ccccccccCCCCcceEE-EE----eccCCCCCceeEEEccCCCCcce
Q 020974 267 VSDIYECGRCGHNKISY-QH----SSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~-q~----q~rsade~mt~f~~C~~C~~~w~ 308 (319)
....+.|+.||..=... .+ .+...+.| |.|..||..+.
T Consensus 25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~----~~C~~C~k~F~ 67 (85)
T 2lv2_A 25 SAECHLCPVCGESFASKGAQERHLRLLHAAQV----FPCKYCPATFY 67 (85)
T ss_dssp CCTTEECTTSCCEESSHHHHHHHHHTTSCSSS----EECTTSSCEES
T ss_pred CCCCEECCCCCCCcCcHHHHhhhhhhccCCCc----cCCCCCCCEeC
Confidence 33568999999753322 11 22334444 79999998764
No 109
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.42 E-value=32 Score=23.15 Aligned_cols=16 Identities=31% Similarity=0.715 Sum_probs=13.7
Q ss_pred cccccccCCCCcceEE
Q 020974 268 SDIYECGRCGHNKISY 283 (319)
Q Consensus 268 t~~~~C~~C~~~~~~~ 283 (319)
.+.+.||.||..+..|
T Consensus 33 P~dw~CP~Cg~~K~~F 48 (52)
T 1yk4_A 33 PDDWVCPLCGAPKSEF 48 (52)
T ss_dssp CTTCBCTTTCCBGGGE
T ss_pred CCCCcCCCCCCCHHHc
Confidence 4668999999998887
No 110
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.15 E-value=34 Score=17.84 Aligned_cols=11 Identities=18% Similarity=0.797 Sum_probs=7.5
Q ss_pred EEccCCCCcce
Q 020974 298 VTCLNCNQYWV 308 (319)
Q Consensus 298 ~~C~~C~~~w~ 308 (319)
|.|..||..+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 57888876653
No 111
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.61 E-value=20 Score=18.53 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=7.7
Q ss_pred EEccCCCCcce
Q 020974 298 VTCLNCNQYWV 308 (319)
Q Consensus 298 ~~C~~C~~~w~ 308 (319)
|.|..||..+.
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 57788877654
No 112
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=21.09 E-value=1.6e+02 Score=21.54 Aligned_cols=64 Identities=17% Similarity=0.060 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhhchhh-hhhhhhccCChHHHHHHHHHHHHHHhccCchhHHHHHHHHHHhcC
Q 020974 135 DSFREIVREKLYDALSKVSDEAADK-VTIDLVKACDPIQVAILVESAMYEKWCRSNGMYKFKYRCLLFNIS 204 (319)
Q Consensus 135 d~vR~k~r~~L~~aL~~~~~e~~~~-~~~~~~~~~d~~~lA~~IE~~lf~~~~~~~~~Yk~k~Rsl~~NLk 204 (319)
..-|.+-..-|...|+....-.+.+ +..+ -...-|.+.|.+||... .+...|-+-+|..+..++
T Consensus 9 ~~ERsknv~eL~qiLmDIn~iNGG~~~~~E-----Klk~~A~~FEaaLyaks-SSK~eYmdsMr~ki~aMr 73 (85)
T 2k0n_A 9 NAERAKNVNGLLQVLMDINTLNGGSSDTAD-----KIRIHAKNFEAALFAKS-SSKKEYMDSMNEKVAVMR 73 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSTTHHH-----HHHHHHHHHHHHHHHSC-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhHHH-----HHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHH
Confidence 4557776666777777532111111 0111 12345899999999864 345799999999887764
No 113
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=21.04 E-value=51 Score=29.58 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=18.9
Q ss_pred ccccCCCCcceEEEEeccCCCCCceeEEEccCCCC
Q 020974 271 YECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQ 305 (319)
Q Consensus 271 ~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~ 305 (319)
.+|++||..-..-.+- -...|-|..|..
T Consensus 243 ~pC~~CG~~I~~~~~~-------gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVA-------GRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEET-------TEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEEC-------CCceEECCCCCC
Confidence 5899999865544221 144578999986
No 114
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=21.03 E-value=86 Score=29.29 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=26.5
Q ss_pred cccccccCCCCcc--eEE-EEecc-CCCC----C-ceeEEEccCCCCcceecc
Q 020974 268 SDIYECGRCGHNK--ISY-QHSSI-LDDY----N-LTRHVTCLNCNQYWVSTN 311 (319)
Q Consensus 268 t~~~~C~~C~~~~--~~~-q~q~r-sade----~-mt~f~~C~~C~~~w~~~~ 311 (319)
.+.-+|..||+.. +.+ +--.. ..+| . -.-.|.|..||+.=+|-|
T Consensus 117 vn~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFPR 169 (335)
T 1x3z_A 117 CNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPR 169 (335)
T ss_dssp CSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEE
T ss_pred eCCCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcccccCC
Confidence 4567999999875 343 22222 2222 1 235589999998765533
No 115
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=20.75 E-value=27 Score=17.96 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=7.1
Q ss_pred EEccCCCCcce
Q 020974 298 VTCLNCNQYWV 308 (319)
Q Consensus 298 ~~C~~C~~~w~ 308 (319)
|.|..||..+.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 46777776653
No 116
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.47 E-value=28 Score=23.70 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=14.1
Q ss_pred ccccccccCCCCcceEE
Q 020974 267 VSDIYECGRCGHNKISY 283 (319)
Q Consensus 267 ~t~~~~C~~C~~~~~~~ 283 (319)
..+.+.||.||..+..|
T Consensus 33 lP~dw~CP~Cg~~K~~F 49 (54)
T 4rxn_A 33 IPDDWVCPLCGVGKDEF 49 (54)
T ss_dssp SCTTCBCTTTCCBGGGE
T ss_pred CCCCCcCcCCCCcHHHc
Confidence 34678999999998877
No 117
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=20.36 E-value=42 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=19.8
Q ss_pred ccccccCCCCcc--eEEEEeccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNK--ISYQHSSILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~--~~~q~q~rsade~mt~f~~C~~C~~~w~ 308 (319)
....||.||+.. ..+ -. ...| ++|.+||--+.
T Consensus 20 ~~~~CPECGs~~t~IV~-D~--erGE-----~VCsdCGLVLE 53 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVE-RF--SEGD-----VVCALCGLVLS 53 (197)
T ss_dssp CCCCCTTTCCSSCCEEE-EG--GGTE-----EEETTTCBBCC
T ss_pred cCeECcCCCCcCCeEEE-eC--CCCE-----EEEcCCCCCcC
Confidence 345899999953 332 11 1223 79999996543
No 118
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=20.15 E-value=9.2 Score=27.31 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=23.9
Q ss_pred ccccccCCCCcceEEEEeccCCCCCceeEEEccCCCCcceec
Q 020974 269 DIYECGRCGHNKISYQHSSILDDYNLTRHVTCLNCNQYWVST 310 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~q~q~rsade~mt~f~~C~~C~~~w~~~ 310 (319)
....|..||..++.. ++ ...+.- +.|+.||-.|+.-
T Consensus 8 ~~~~C~~C~t~~Tp~-WR--~gp~G~---~LCNaCGl~~~~~ 43 (66)
T 4gat_A 8 GPTTCTNCFTQTTPL-WR--RNPEGQ---PLCNACGLFLKLH 43 (66)
T ss_dssp SSCCCTTTCCCCCSS-CE--EETTTE---EECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCc-CC--cCCCCC---CccHHHHHHHHHc
Confidence 457899999877653 22 222222 6899999888743
No 119
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.14 E-value=5.7 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.096 Sum_probs=21.9
Q ss_pred ccccccCCCCcceEE-EE---e--ccCCCCCceeEEEccCCCCcce
Q 020974 269 DIYECGRCGHNKISY-QH---S--SILDDYNLTRHVTCLNCNQYWV 308 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~---q--~rsade~mt~f~~C~~C~~~w~ 308 (319)
..|.|..|+..=... .+ + +...+. -|.|..||..+.
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k----~~~C~~C~k~F~ 52 (54)
T 2eps_A 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSER----PHKCQVWVSGPS 52 (54)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHTSCCCC----CCCSSSSCCSSC
T ss_pred CCeECCCCCcccCCHHHHHHHHHHhcCCCC----CccCCCCCCCCC
Confidence 468999999753332 22 1 222322 379999998763
No 120
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=20.07 E-value=46 Score=24.36 Aligned_cols=9 Identities=44% Similarity=0.962 Sum_probs=5.3
Q ss_pred EEccCCCCc
Q 020974 298 VTCLNCNQY 306 (319)
Q Consensus 298 ~~C~~C~~~ 306 (319)
++|..||+.
T Consensus 44 v~C~~C~~~ 52 (86)
T 2ct7_A 44 ATCPQCHQT 52 (86)
T ss_dssp EECTTTCCE
T ss_pred eEeCCCCCc
Confidence 566666554
No 121
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=20.03 E-value=31 Score=28.07 Aligned_cols=28 Identities=18% Similarity=0.542 Sum_probs=19.9
Q ss_pred ccccccCCCCcceEE-EEeccCCCCCceeEEEccCCC
Q 020974 269 DIYECGRCGHNKISY-QHSSILDDYNLTRHVTCLNCN 304 (319)
Q Consensus 269 ~~~~C~~C~~~~~~~-q~q~rsade~mt~f~~C~~C~ 304 (319)
+.-.|..||....+| .+ ..-+| .|..|.
T Consensus 24 ~N~~CaDCg~~~P~WaS~-------n~Gvf-iC~~Cs 52 (140)
T 2olm_A 24 HNRKCFDCDQRGPTYVNM-------TVGSF-VCTSCS 52 (140)
T ss_dssp GGGSCTTTCSSCCCEEET-------TTTEE-ECHHHH
T ss_pred CCCcCCCCCCCCCCceee-------ccCEE-Echhcc
Confidence 446899999998888 44 22344 698884
Done!