BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020975
(319 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225429426|ref|XP_002276186.1| PREDICTED: uncharacterized protein LOC100259526 [Vitis vinifera]
gi|147856945|emb|CAN82846.1| hypothetical protein VITISV_007988 [Vitis vinifera]
gi|296081603|emb|CBI20608.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/317 (83%), Positives = 290/317 (91%), Gaps = 6/317 (1%)
Query: 1 MAS-SPSHQTHIPLSSDPDGKPIDS-----VVPIHIVTNASQLPAEFLEPSSERQLVIGF 54
MAS SPS T+IP+ SDP GKPID +VPIHIVT SQLP EFLEPS ER+LVIGF
Sbjct: 1 MASPSPSQPTYIPMPSDPGGKPIDHEGLLPLVPIHIVTLPSQLPIEFLEPSPERKLVIGF 60
Query: 55 DCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDS 114
DCEGVDLCRHG+LCIMQ+AFPDAIYLVDAIQGGE ++KACKPALESSYITKVIHDCKRDS
Sbjct: 61 DCEGVDLCRHGTLCIMQIAFPDAIYLVDAIQGGEMLMKACKPALESSYITKVIHDCKRDS 120
Query: 115 EALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV 174
EALYFQFGIKLHNVVDTQIAYSLIEEQEGRKR DDYISFVGLLADPRYCG+SY EK+EV
Sbjct: 121 EALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRLVDDYISFVGLLADPRYCGVSYLEKQEV 180
Query: 175 RVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRC 234
R LLRQ+P FWT+RPL++LMVRAAADDVRFL YIYH MM+KLN++SLWYLAVRGALYCRC
Sbjct: 181 RDLLRQNPDFWTHRPLSDLMVRAAADDVRFLLYIYHKMMEKLNERSLWYLAVRGALYCRC 240
Query: 235 FCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKES 294
FCIN+NDY DWPPLPP+PD LIVEG+ PEEEILS+L VPPGKMGR+IGRRG+SIL++KES
Sbjct: 241 FCINDNDYADWPPLPPIPDNLIVEGNAPEEEILSVLHVPPGKMGRVIGRRGASILSVKES 300
Query: 295 CNAEILIGGAKGPPDKV 311
CNAEILIGGAKGPPDKV
Sbjct: 301 CNAEILIGGAKGPPDKV 317
>gi|255550866|ref|XP_002516481.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223544301|gb|EEF45822.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 342
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/316 (80%), Positives = 284/316 (89%), Gaps = 6/316 (1%)
Query: 2 ASSPSHQTHIPLSSDPDG-KPID-----SVVPIHIVTNASQLPAEFLEPSSERQLVIGFD 55
ASS SHQTHIPL SD G KP+D S+VPIH+VT+ASQLPAEFL P+ ++QL+IGFD
Sbjct: 3 ASSSSHQTHIPLPSDSGGNKPLDHEAQLSLVPIHVVTDASQLPAEFLNPTPDKQLIIGFD 62
Query: 56 CEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSE 115
CEGVDLCRHG+LCIMQ+AFPDAI+LVDA QGGE ++KACKPALESSYITKVIHDCKRDSE
Sbjct: 63 CEGVDLCRHGTLCIMQIAFPDAIFLVDATQGGEMLLKACKPALESSYITKVIHDCKRDSE 122
Query: 116 ALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVR 175
ALYFQFGIKLHNV DTQIAYSLIEEQEGR + PDDYISFVGLLADPRYCGISY EKEEVR
Sbjct: 123 ALYFQFGIKLHNVFDTQIAYSLIEEQEGRTKLPDDYISFVGLLADPRYCGISYLEKEEVR 182
Query: 176 VLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCF 235
+LLRQD FWTYRPL+ELM+RAAADDVRFL YIYH M+KKLNQ+SLWYLAVR ALYCRCF
Sbjct: 183 LLLRQDSNFWTYRPLSELMIRAAADDVRFLLYIYHKMIKKLNQRSLWYLAVRSALYCRCF 242
Query: 236 CINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESC 295
C N+N+Y DWP +PP+P L+ +G+ PEEEILS+L VPPGKMGR+IGRRG+SIL+IKESC
Sbjct: 243 CTNDNNYADWPSIPPIPGNLVGDGNAPEEEILSVLGVPPGKMGRVIGRRGASILSIKESC 302
Query: 296 NAEILIGGAKGPPDKV 311
NAEI IGG+KGPPDKV
Sbjct: 303 NAEIFIGGSKGPPDKV 318
>gi|224142834|ref|XP_002324746.1| predicted protein [Populus trichocarpa]
gi|222866180|gb|EEF03311.1| predicted protein [Populus trichocarpa]
Length = 331
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 249/305 (81%), Positives = 276/305 (90%), Gaps = 5/305 (1%)
Query: 7 HQTHIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGS 66
HQTH PL SDPD + VPIH+VT SQLPAEFL PS+ +QL+IGFDCEGVDLCRHG+
Sbjct: 8 HQTHTPLPSDPDHE-----VPIHVVTEPSQLPAEFLNPSAAKQLIIGFDCEGVDLCRHGT 62
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LCIMQLAFPDAIYLVDAI+GGE++++ACKPALESS+ITKVIHDCKRDSEALYFQFGIKLH
Sbjct: 63 LCIMQLAFPDAIYLVDAIKGGESLIRACKPALESSHITKVIHDCKRDSEALYFQFGIKLH 122
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
NVVDTQIAYS IEEQEGR R PDDYISFVGLLADPRYCGISY EKEEVRVLLRQDP FWT
Sbjct: 123 NVVDTQIAYSQIEEQEGRTRLPDDYISFVGLLADPRYCGISYLEKEEVRVLLRQDPMFWT 182
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWP 246
YRPL+E+M+ AAADDVRFL IY+ MM+KLNQ+SLWYLAVRG LYCRCFCINENDY DWP
Sbjct: 183 YRPLSEMMIHAAADDVRFLLRIYYKMMEKLNQRSLWYLAVRGVLYCRCFCINENDYADWP 242
Query: 247 PLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKG 306
+PP+PD LI+E + PEEEILS+LDVPPGKMGR+IGRRG+SIL++KESCNAEI IGGAKG
Sbjct: 243 HIPPIPDNLIIEDNAPEEEILSVLDVPPGKMGRVIGRRGASILSVKESCNAEIFIGGAKG 302
Query: 307 PPDKV 311
P DKV
Sbjct: 303 PTDKV 307
>gi|449450328|ref|XP_004142915.1| PREDICTED: uncharacterized protein LOC101214970 [Cucumis sativus]
gi|449522022|ref|XP_004168027.1| PREDICTED: uncharacterized protein LOC101223734 [Cucumis sativus]
Length = 340
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 244/317 (76%), Positives = 281/317 (88%), Gaps = 6/317 (1%)
Query: 1 MASSP-SHQTHIPLSSDPDGKPID-----SVVPIHIVTNASQLPAEFLEPSSERQLVIGF 54
MA++P SHQT IPL SD D ++VPIHIVT+ SQLP EF+EPS E+ LV+GF
Sbjct: 1 MANTPPSHQTCIPLPSDSGENQTDPEANATLVPIHIVTHVSQLPKEFVEPSPEKPLVVGF 60
Query: 55 DCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDS 114
DCEGVDLCRHG+LC+MQ+AFPDA+YLVDA+QGGE +VK CKPALES Y+TKVIHDCKRDS
Sbjct: 61 DCEGVDLCRHGNLCVMQIAFPDAVYLVDAVQGGEELVKVCKPALESKYVTKVIHDCKRDS 120
Query: 115 EALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV 174
EALYFQFGIKL+NV+DTQIAYSL+EEQEGR ++PD+YISFV LLAD RYCG+SY EKEEV
Sbjct: 121 EALYFQFGIKLNNVIDTQIAYSLLEEQEGRTKTPDNYISFVSLLADSRYCGVSYVEKEEV 180
Query: 175 RVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRC 234
R+LLR+DP+FWTYRP++ELMVRAAADDVRFL YIYH MM+KLN +SLWYLAVRGALYCRC
Sbjct: 181 RLLLRKDPKFWTYRPMSELMVRAAADDVRFLLYIYHKMMEKLNHRSLWYLAVRGALYCRC 240
Query: 235 FCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKES 294
FCI++N Y DWPPLP VPD L+ EG+ PEEEILS+LDVP G MGR+IGRRG+SIL+IKES
Sbjct: 241 FCISDNGYADWPPLPSVPDNLVKEGNAPEEEILSVLDVPHGMMGRVIGRRGASILSIKES 300
Query: 295 CNAEILIGGAKGPPDKV 311
CNAEILIGGAKGPPDKV
Sbjct: 301 CNAEILIGGAKGPPDKV 317
>gi|225442373|ref|XP_002281479.1| PREDICTED: uncharacterized protein LOC100263418 [Vitis vinifera]
Length = 336
Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/316 (78%), Positives = 283/316 (89%), Gaps = 5/316 (1%)
Query: 1 MASSPSHQTHIPLSSD-----PDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFD 55
MA + HQT+IPL SD PD + S+VPI+IVT+ASQLP +FL PS RQLVIGFD
Sbjct: 1 MAFASPHQTYIPLPSDSGGQHPDHAALLSLVPIYIVTHASQLPKDFLVPSPVRQLVIGFD 60
Query: 56 CEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSE 115
CEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGE ++KACKPALESSYITKVIHDCKRDSE
Sbjct: 61 CEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGEKLMKACKPALESSYITKVIHDCKRDSE 120
Query: 116 ALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVR 175
ALYFQFGIKLHNVVD+QIAYSLIEEQ+GR+RSPDDYISFVGLLADPRYCGISY EK+EVR
Sbjct: 121 ALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRSPDDYISFVGLLADPRYCGISYLEKKEVR 180
Query: 176 VLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCF 235
VLL+QDP+FWTYRPL+ELMVRAAADDVRFLPYIY+ MM++LN+ SLW LAVRGALYCRCF
Sbjct: 181 VLLKQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMMEELNEHSLWKLAVRGALYCRCF 240
Query: 236 CINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESC 295
C+N+N+Y DWP LP +P+ L+V+G PEEEILS+L++P GKMG +IGR+G+SIL+IK+ C
Sbjct: 241 CVNDNEYADWPSLPNMPENLMVDGKAPEEEILSVLEIPQGKMGCVIGRKGASILSIKQCC 300
Query: 296 NAEILIGGAKGPPDKV 311
AEILIGGAKGPPD V
Sbjct: 301 KAEILIGGAKGPPDMV 316
>gi|297743128|emb|CBI35995.3| unnamed protein product [Vitis vinifera]
Length = 367
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/316 (78%), Positives = 283/316 (89%), Gaps = 5/316 (1%)
Query: 1 MASSPSHQTHIPLSSD-----PDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFD 55
MA + HQT+IPL SD PD + S+VPI+IVT+ASQLP +FL PS RQLVIGFD
Sbjct: 32 MAFASPHQTYIPLPSDSGGQHPDHAALLSLVPIYIVTHASQLPKDFLVPSPVRQLVIGFD 91
Query: 56 CEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSE 115
CEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGE ++KACKPALESSYITKVIHDCKRDSE
Sbjct: 92 CEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGEKLMKACKPALESSYITKVIHDCKRDSE 151
Query: 116 ALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVR 175
ALYFQFGIKLHNVVD+QIAYSLIEEQ+GR+RSPDDYISFVGLLADPRYCGISY EK+EVR
Sbjct: 152 ALYFQFGIKLHNVVDSQIAYSLIEEQQGRRRSPDDYISFVGLLADPRYCGISYLEKKEVR 211
Query: 176 VLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCF 235
VLL+QDP+FWTYRPL+ELMVRAAADDVRFLPYIY+ MM++LN+ SLW LAVRGALYCRCF
Sbjct: 212 VLLKQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMMEELNEHSLWKLAVRGALYCRCF 271
Query: 236 CINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESC 295
C+N+N+Y DWP LP +P+ L+V+G PEEEILS+L++P GKMG +IGR+G+SIL+IK+ C
Sbjct: 272 CVNDNEYADWPSLPNMPENLMVDGKAPEEEILSVLEIPQGKMGCVIGRKGASILSIKQCC 331
Query: 296 NAEILIGGAKGPPDKV 311
AEILIGGAKGPPD V
Sbjct: 332 KAEILIGGAKGPPDMV 347
>gi|82621130|gb|ABB86253.1| 3'-5' exonuclease domain-containing protein-like [Solanum
tuberosum]
Length = 338
Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust.
Identities = 233/288 (80%), Positives = 266/288 (92%)
Query: 24 SVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA 83
S VPIH+VTN S+LP EFLEPS+E QLVIGFDCEGVDLCRHG+LCIMQLAFPDAIYLVDA
Sbjct: 28 STVPIHVVTNPSELPVEFLEPSAETQLVIGFDCEGVDLCRHGTLCIMQLAFPDAIYLVDA 87
Query: 84 IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEG 143
+QGGE VV+ACKPALES+YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI EQEG
Sbjct: 88 VQGGEAVVQACKPALESNYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLINEQEG 147
Query: 144 RKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR 203
R PD +ISFVGLLADPRYCG+SY EKEEVRVLLRQDP++WTYRPL+E M+RAAADDVR
Sbjct: 148 HARVPDCHISFVGLLADPRYCGVSYDEKEEVRVLLRQDPKYWTYRPLSEQMIRAAADDVR 207
Query: 204 FLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPE 263
FL +IYH M++KLN +SLW LAVRGALYCRCFCIN+N + DWPPLPP+P+ ++ +G +PE
Sbjct: 208 FLLHIYHKMVQKLNDKSLWNLAVRGALYCRCFCINDNHFADWPPLPPIPENIVADGSIPE 267
Query: 264 EEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311
EE+LS++DVPPGKMGR+IGRRG+SIL+IK+SC+AEI IGGAKGPPDKV
Sbjct: 268 EEVLSVVDVPPGKMGRVIGRRGASILSIKQSCDAEIFIGGAKGPPDKV 315
>gi|224088954|ref|XP_002308585.1| predicted protein [Populus trichocarpa]
gi|222854561|gb|EEE92108.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/344 (70%), Positives = 273/344 (79%), Gaps = 40/344 (11%)
Query: 7 HQTHIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGS 66
HQT +P SDP GKP+D VPIH+VT SQLP EFL PS+ +QL+IGFDCEGV+LCRHG+
Sbjct: 10 HQTRVPFPSDPGGKPLDHDVPIHVVTEPSQLPVEFLNPSAAKQLIIGFDCEGVNLCRHGA 69
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LCIMQLAFPDAIYLVDAI GGE+++K CKPALESSYITKVIHDCKRDSEALYFQFGIKLH
Sbjct: 70 LCIMQLAFPDAIYLVDAINGGESLIKVCKPALESSYITKVIHDCKRDSEALYFQFGIKLH 129
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
NVVDTQIAYSLIEEQEGR R P DYISFVGLLADPRYCG+SY EKEEVRVLLRQDP FWT
Sbjct: 130 NVVDTQIAYSLIEEQEGRTRLPGDYISFVGLLADPRYCGVSYLEKEEVRVLLRQDPMFWT 189
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWP 246
YRPL+E+M+RAAADDVRFL IY+ MM+KLN++SLWYLAVRGALY RCFCINEN+Y DWP
Sbjct: 190 YRPLSEMMIRAAADDVRFLLCIYYKMMEKLNERSLWYLAVRGALYSRCFCINENNYADWP 249
Query: 247 PLPPVP----------------------------------------DYLIVEGDVPEEEI 266
+PP+P D L +E + PEEEI
Sbjct: 250 DIPPIPGFMFYQPIHSALLLVSQSSWNRVTNSVDLHDLFWMDFVKEDNLNIEDNAPEEEI 309
Query: 267 LSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDK 310
L +LDVPPGKMGR+IGRRG+SIL+IK+SCNAEI GGAKGPPDK
Sbjct: 310 LYVLDVPPGKMGRVIGRRGASILSIKQSCNAEIFFGGAKGPPDK 353
>gi|297825683|ref|XP_002880724.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp.
lyrata]
gi|297326563|gb|EFH56983.1| hypothetical protein ARALYDRAFT_481448 [Arabidopsis lyrata subsp.
lyrata]
Length = 342
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/317 (74%), Positives = 276/317 (87%), Gaps = 7/317 (2%)
Query: 2 ASSPSHQTHIPLSSDPDGKPI-----DSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDC 56
+SSP+ H+P+ +P G+ + + VPIHIVT+ QLPA+FL PS E++LVIGFDC
Sbjct: 3 SSSPTQLAHVPIPPEPGGRSLTQEANEPQVPIHIVTDPLQLPADFLNPSPEKKLVIGFDC 62
Query: 57 EGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEA 116
EGVDLCRHG LCIMQ+AF +AIYLVD I+GGE ++KACKPALES+YITKVIHDCKRDSEA
Sbjct: 63 EGVDLCRHGKLCIMQIAFSNAIYLVDVIEGGEVLMKACKPALESTYITKVIHDCKRDSEA 122
Query: 117 LYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRV 176
LYFQFGI+LHNVVDTQIAYSLIEEQEGR+R DDYISFV LLADPRYCGISY+EKEEVRV
Sbjct: 123 LYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVSLLADPRYCGISYEEKEEVRV 182
Query: 177 LLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCF- 235
L+RQDP+FWTYRP+TELM+RAAADDVRFL Y+YH MM KLNQ+SLW+LAVRGALYCRC
Sbjct: 183 LMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHKMMGKLNQRSLWHLAVRGALYCRCLC 242
Query: 236 CINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESC 295
C+N+ D+ DWP +PP+PD L E EEEILS+LDVPPGKMGR+IGR+G+SILAIKE+C
Sbjct: 243 CMNDADFADWPTVPPIPDNLKSEDQCLEEEILSVLDVPPGKMGRVIGRKGASILAIKEAC 302
Query: 296 N-AEILIGGAKGPPDKV 311
N AEILIGGAKGPPDK+
Sbjct: 303 NSAEILIGGAKGPPDKI 319
>gi|18400976|ref|NP_565612.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
thaliana]
gi|13605561|gb|AAK32774.1|AF361606_1 At2g25910/F17H15.6 [Arabidopsis thaliana]
gi|18491139|gb|AAL69538.1| At2g25910/F17H15.6 [Arabidopsis thaliana]
gi|20197359|gb|AAC42241.2| expressed protein [Arabidopsis thaliana]
gi|21554875|gb|AAM63716.1| unknown [Arabidopsis thaliana]
gi|330252677|gb|AEC07771.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
thaliana]
Length = 341
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 237/316 (75%), Positives = 275/316 (87%), Gaps = 6/316 (1%)
Query: 2 ASSPSHQTHIPLSSDPDGK-PIDSV----VPIHIVTNASQLPAEFLEPSSERQLVIGFDC 56
+SSP+ H+P+ +P G+ P VPI+IVT+ QLPA+FL PS E++LVIGFDC
Sbjct: 3 SSSPTQLAHVPIPPEPGGRSPTQEANEPPVPIYIVTDPFQLPADFLNPSPEKKLVIGFDC 62
Query: 57 EGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEA 116
EGVDLCRHG LCIMQ+AF +AIYLVD I+GGE ++KACKPALES+YITKVIHDCKRDSEA
Sbjct: 63 EGVDLCRHGKLCIMQIAFSNAIYLVDVIEGGEVIMKACKPALESNYITKVIHDCKRDSEA 122
Query: 117 LYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRV 176
LYFQFGI+LHNVVDTQIAYSLIEEQEGR+R DDYISFV LLADPRYCGISY+EKEEVRV
Sbjct: 123 LYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVSLLADPRYCGISYEEKEEVRV 182
Query: 177 LLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCF- 235
L+RQDP+FWTYRP+TELM+RAAADDVRFL Y+YH MM KLNQ+SLW+LAVRGALYCRC
Sbjct: 183 LMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHKMMGKLNQRSLWHLAVRGALYCRCLC 242
Query: 236 CINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESC 295
C+N+ D+ DWP +PP+PD L E EEEILS+LDVPPGKMGR+IGR+G+SILAIKE+C
Sbjct: 243 CMNDADFADWPTVPPIPDNLKSEDQCLEEEILSVLDVPPGKMGRVIGRKGASILAIKEAC 302
Query: 296 NAEILIGGAKGPPDKV 311
NAEILIGGAKGPPDK+
Sbjct: 303 NAEILIGGAKGPPDKI 318
>gi|356564093|ref|XP_003550291.1| PREDICTED: uncharacterized protein LOC100788577 [Glycine max]
Length = 343
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 239/318 (75%), Positives = 273/318 (85%), Gaps = 8/318 (2%)
Query: 2 ASSPSHQ--THIPLSSDPDG------KPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIG 53
+SSPSH TH+PL G + +S VPIHIVT ASQLP EFLEPS + +LVIG
Sbjct: 3 SSSPSHSYLTHLPLHPSHQGDSEKRVEDDESRVPIHIVTAASQLPVEFLEPSPQSKLVIG 62
Query: 54 FDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRD 113
FDCEGVDLCR G+LC+MQLAFPDA+YLVDAI+GGE ++ ACKPALES+YITKVIHDCKRD
Sbjct: 63 FDCEGVDLCRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDCKRD 122
Query: 114 SEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEE 173
SEALYFQFGIKL+NVVDTQIAYSLIEEQEGRKR DDYISFVGLLADPRYCG SY EKEE
Sbjct: 123 SEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGKSYDEKEE 182
Query: 174 VRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCR 233
VRVLLRQDP+FW +RPL+E MVRAAADDVRFL YIYH MM+KLN++SLWYLAVRG LYCR
Sbjct: 183 VRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQMMEKLNERSLWYLAVRGVLYCR 242
Query: 234 CFCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKE 293
CFC+N N++ DWP LPP+PD L +G P+EEILS+LD+P GKMG +IG+RG++IL+IK+
Sbjct: 243 CFCLNSNNFADWPSLPPIPDNLNADGSDPKEEILSVLDIPQGKMGLVIGKRGATILSIKQ 302
Query: 294 SCNAEILIGGAKGPPDKV 311
SCNAEIL GG KGPPDKV
Sbjct: 303 SCNAEILTGGPKGPPDKV 320
>gi|79323071|ref|NP_001031418.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
thaliana]
gi|330252678|gb|AEC07772.1| 3'-5' exonuclease and KH-I domain-containing protein [Arabidopsis
thaliana]
Length = 342
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/317 (74%), Positives = 275/317 (86%), Gaps = 7/317 (2%)
Query: 2 ASSPSHQTHIPLSSDPDGK-PIDSV----VPIHIVTNASQLPAEFLEPSSERQLVIGFDC 56
+SSP+ H+P+ +P G+ P VPI+IVT+ QLPA+FL PS E++LVIGFDC
Sbjct: 3 SSSPTQLAHVPIPPEPGGRSPTQEANEPPVPIYIVTDPFQLPADFLNPSPEKKLVIGFDC 62
Query: 57 EGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEA 116
EGVDLCRHG LCIMQ+AF +AIYLVD I+GGE ++KACKPALES+YITKVIHDCKRDSEA
Sbjct: 63 EGVDLCRHGKLCIMQIAFSNAIYLVDVIEGGEVIMKACKPALESNYITKVIHDCKRDSEA 122
Query: 117 LYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRV 176
LYFQFGI+LHNVVDTQIAYSLIEEQEGR+R DDYISFV LLADPRYCGISY+EKEEVRV
Sbjct: 123 LYFQFGIRLHNVVDTQIAYSLIEEQEGRRRPLDDYISFVSLLADPRYCGISYEEKEEVRV 182
Query: 177 LLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCF- 235
L+RQDP+FWTYRP+TELM+RAAADDVRFL Y+YH MM KLNQ+SLW+LAVRGALYCRC
Sbjct: 183 LMRQDPKFWTYRPMTELMIRAAADDVRFLLYLYHKMMGKLNQRSLWHLAVRGALYCRCLC 242
Query: 236 CINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESC 295
C+N+ D+ DWP +PP+PD L E EEEILS+LDVPPGKMGR+IGR+G+SILAIKE+C
Sbjct: 243 CMNDADFADWPTVPPIPDNLKSEDQCLEEEILSVLDVPPGKMGRVIGRKGASILAIKEAC 302
Query: 296 N-AEILIGGAKGPPDKV 311
N AEILIGGAKGPPDK+
Sbjct: 303 NSAEILIGGAKGPPDKI 319
>gi|356552318|ref|XP_003544515.1| PREDICTED: uncharacterized protein LOC100810098 [Glycine max]
Length = 344
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/309 (75%), Positives = 266/309 (86%), Gaps = 6/309 (1%)
Query: 9 THIPLSSDPDGKP------IDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC 62
TH+PL G+ +S VPIHIVT A+QLP EFLEPS + +LVIGFDCEGVDLC
Sbjct: 13 THLPLHPSHQGESEKRVEDDESRVPIHIVTAATQLPVEFLEPSPQSKLVIGFDCEGVDLC 72
Query: 63 RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFG 122
R G+LC+MQLAFPDA+YLVDAI+GGE ++ ACKPALES+YITKVIHDCKRDSEALYFQFG
Sbjct: 73 RKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDCKRDSEALYFQFG 132
Query: 123 IKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
IKL+NVVDTQIAYSLIEEQEGRKR DDYISFVGLLADPRYCGISY EKEEVRVLLRQDP
Sbjct: 133 IKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGISYDEKEEVRVLLRQDP 192
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDY 242
+FWT+RPL+E M+RAAADDVRFL YIY MM+KLN++SLWYLAV GALYCRCFC+N N++
Sbjct: 193 KFWTHRPLSEQMIRAAADDVRFLLYIYRQMMEKLNERSLWYLAVHGALYCRCFCLNSNNF 252
Query: 243 VDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIG 302
DWP LP +PD L +G+ EEEILS+LD+P GKMG +IG+RG++IL+IK SCNAEIL G
Sbjct: 253 ADWPSLPSIPDNLNADGNDLEEEILSVLDIPQGKMGLVIGKRGATILSIKRSCNAEILTG 312
Query: 303 GAKGPPDKV 311
G KGPPDKV
Sbjct: 313 GPKGPPDKV 321
>gi|255647529|gb|ACU24228.1| unknown [Glycine max]
Length = 345
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 231/310 (74%), Positives = 265/310 (85%), Gaps = 7/310 (2%)
Query: 9 THIPLSSDPDGKP------IDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC 62
TH+PL G+ +S VPIHIVT A+QLP EFLEPS + +LVIGFDCEGVDLC
Sbjct: 13 THLPLHPSHQGESEKRVEDDESRVPIHIVTAATQLPVEFLEPSPQSKLVIGFDCEGVDLC 72
Query: 63 RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFG 122
R G+LC+MQLAFPDA+YLVDAI+GGE ++ ACKPALES+YITKVIHDCKRDSEALYFQFG
Sbjct: 73 RKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDCKRDSEALYFQFG 132
Query: 123 IKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
IKL+N VDTQIAYSLIEEQEGRKR DDYISFVGLLADPRYCGISY EKEEVRVLLRQDP
Sbjct: 133 IKLNNAVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGISYDEKEEVRVLLRQDP 192
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDY 242
+FWT+RPL+E M+RAAADDVRFL YIY MM+KLN++SLWYLAV GALYCRCFC+N N++
Sbjct: 193 KFWTHRPLSEQMIRAAADDVRFLLYIYRQMMEKLNERSLWYLAVHGALYCRCFCLNSNNF 252
Query: 243 VDWPPLPPVP-DYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILI 301
DWP LP +P D L +G+ EEEILS+LD+P GKMG +IG+RG++IL+IK SCNAEIL
Sbjct: 253 ADWPSLPSIPVDNLNADGNDLEEEILSVLDIPQGKMGLVIGKRGATILSIKRSCNAEILT 312
Query: 302 GGAKGPPDKV 311
GG KGPPDKV
Sbjct: 313 GGPKGPPDKV 322
>gi|222618694|gb|EEE54826.1| hypothetical protein OsJ_02264 [Oryza sativa Japonica Group]
Length = 504
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 211/293 (72%), Positives = 253/293 (86%)
Query: 19 GKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAI 78
G+ + +P+ +VT QLP EFLEPS+ ++LVIGFDCEGVDLCRHG+LCIMQ+AFPDA+
Sbjct: 189 GELLSPPLPMLVVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDLCRHGALCIMQIAFPDAV 248
Query: 79 YLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI 138
YLVDAI+GG+ +++ACKPALES Y+TKVIHDCKRDSEALYFQFGIKLHNV+DTQIAYSL+
Sbjct: 249 YLVDAIEGGKELIEACKPALESEYVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLL 308
Query: 139 EEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAA 198
EEQEG+KR D+YISFV LLADPRYCG++Y EKEEVR LLRQDP FWT+RPL+E+M+RAA
Sbjct: 309 EEQEGKKRGYDEYISFVSLLADPRYCGMAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAA 368
Query: 199 ADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVE 258
DDVRFL I+ MM+KL++ SLW L+VR LYCRCFCIN+N Y DWPPLP VPD + +
Sbjct: 369 TDDVRFLLSIHEKMMEKLSKVSLWRLSVRSELYCRCFCINDNKYADWPPLPTVPDEIEPD 428
Query: 259 GDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311
VPE +ILS+LDVPPGKMGR+IGR+GSSI+ +K SCN EI IGGAKGPPD+V
Sbjct: 429 VYVPEVDILSVLDVPPGKMGRVIGRKGSSIMEVKASCNVEIHIGGAKGPPDRV 481
>gi|357135256|ref|XP_003569227.1| PREDICTED: uncharacterized protein LOC100838477 [Brachypodium
distachyon]
Length = 332
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 214/286 (74%), Positives = 246/286 (86%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ 85
+P H+VT QLP EFLEPS+ +LVIGFDCEGVDLCR+G+LCIMQ+AFPDAIYLVDAI+
Sbjct: 24 LPFHVVTKPGQLPVEFLEPSAAHKLVIGFDCEGVDLCRNGALCIMQIAFPDAIYLVDAIE 83
Query: 86 GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
GG+ +++ACKPALES Y+ KVIHDCKRDSEALYFQFGIKLHNV+DTQIAYSLIEEQEG+K
Sbjct: 84 GGKELIEACKPALESEYVIKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIEEQEGKK 143
Query: 146 RSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
R+ D YISFV LLADPRYCG+ Y EKEEVR LLRQDP FW RPL+E+M+RAA DDVRFL
Sbjct: 144 RAYDVYISFVSLLADPRYCGMPYPEKEEVRTLLRQDPNFWKNRPLSEMMIRAATDDVRFL 203
Query: 206 PYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPEEE 265
I+ MM+KL++ SLW LAVR LYCRCFCIN+N Y DWPPLP VPD E VPE +
Sbjct: 204 LNIHEKMMEKLSKVSLWRLAVRSELYCRCFCINDNQYADWPPLPTVPDDFEAEVHVPEVD 263
Query: 266 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311
ILS+LDVPPGKMGR+IGR+GSSI+A+KESCN EI IGGAKGPPD+V
Sbjct: 264 ILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGAKGPPDRV 309
>gi|326496741|dbj|BAJ98397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514394|dbj|BAJ96184.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 332
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 217/307 (70%), Positives = 255/307 (83%), Gaps = 1/307 (0%)
Query: 6 SHQTHIPLSSDPDGKPID-SVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH 64
SH + DP G ++ +P H+VT QLP EFLEPS+ ++LVIGFDCEGVDLCR+
Sbjct: 3 SHPPNSADGEDPAGNNVELPSLPFHVVTKPGQLPVEFLEPSAAKKLVIGFDCEGVDLCRN 62
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G+LCIMQ+AFPDA+YLVDAI+GG+ +V+ACKPALES ++TKVIHDCKRDSEALYFQFGIK
Sbjct: 63 GALCIMQIAFPDAVYLVDAIEGGKELVEACKPALESDHVTKVIHDCKRDSEALYFQFGIK 122
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
LHNV+DTQIAYSLIEEQEG+KR+ D YISFV LLADPRYCG+ Y EKEEVR LLRQDP F
Sbjct: 123 LHNVMDTQIAYSLIEEQEGKKRAYDVYISFVSLLADPRYCGMPYPEKEEVRTLLRQDPNF 182
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVD 244
W RPL+E+M+RAA DDVRFL I+ MM+KL++ S W LAVR LYCRCFCIN+N D
Sbjct: 183 WKNRPLSEMMIRAATDDVRFLLNIHEKMMEKLSKVSSWRLAVRSELYCRCFCINDNQQAD 242
Query: 245 WPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA 304
WPPLP VPD + E VPE +ILS+LDVPPGKMGR+IGR+GSSI+A+KESCN EI IGGA
Sbjct: 243 WPPLPTVPDDIEAEVRVPEVDILSLLDVPPGKMGRVIGRKGSSIMAVKESCNVEIHIGGA 302
Query: 305 KGPPDKV 311
KGPPD+V
Sbjct: 303 KGPPDRV 309
>gi|148909222|gb|ABR17711.1| unknown [Picea sitchensis]
Length = 317
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 211/286 (73%), Positives = 248/286 (86%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ 85
+PIHIVT ASQLP FLEPS ERQLVIGFDCEGVDL R+G LCIMQLAF DA+YLVDA++
Sbjct: 11 IPIHIVTEASQLPCAFLEPSPERQLVIGFDCEGVDLARYGRLCIMQLAFEDAVYLVDAVE 70
Query: 86 GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
GG +++ACKPALES Y+TKV+HDCKRDSEALYFQ+GIKL+NVVDTQIAYSLIEEQEGRK
Sbjct: 71 GGHLLMQACKPALESVYVTKVVHDCKRDSEALYFQYGIKLNNVVDTQIAYSLIEEQEGRK 130
Query: 146 RSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
+PD+YISFVGLLADPRYCG+SY EKEEVR LLR+DP+FW +RPLT +M + AADDVRFL
Sbjct: 131 WAPDEYISFVGLLADPRYCGVSYAEKEEVRTLLREDPKFWEHRPLTYMMKKTAADDVRFL 190
Query: 206 PYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPEEE 265
+IY+ M++KL SLW LAVRG+LYCRCFC+N+ND DWPPLPP+PD LI+EG EEE
Sbjct: 191 LHIYNKMIEKLELHSLWQLAVRGSLYCRCFCVNDNDCNDWPPLPPIPDNLIIEGQTLEEE 250
Query: 266 ILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311
IL +DVP G MGR+IG++G+SIL+IK+S AEI GG KGPPDK+
Sbjct: 251 ILQSVDVPVGNMGRVIGKKGASILSIKKSGKAEIFFGGQKGPPDKI 296
>gi|297597041|ref|NP_001043365.2| Os01g0566900 [Oryza sativa Japonica Group]
gi|52076246|dbj|BAD45014.1| egalitarian-like [Oryza sativa Japonica Group]
gi|125526475|gb|EAY74589.1| hypothetical protein OsI_02478 [Oryza sativa Indica Group]
gi|215712371|dbj|BAG94498.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673376|dbj|BAF05279.2| Os01g0566900 [Oryza sativa Japonica Group]
Length = 307
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 209/282 (74%), Positives = 247/282 (87%)
Query: 30 IVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET 89
+VT QLP EFLEPS+ ++LVIGFDCEGVDLCRHG+LCIMQ+AFPDA+YLVDAI+GG+
Sbjct: 3 VVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDLCRHGALCIMQIAFPDAVYLVDAIEGGKE 62
Query: 90 VVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPD 149
+++ACKPALES Y+TKVIHDCKRDSEALYFQFGIKLHNV+DTQIAYSL+EEQEG+KR D
Sbjct: 63 LIEACKPALESEYVTKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLLEEQEGKKRGYD 122
Query: 150 DYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
+YISFV LLADPRYCG++Y EKEEVR LLRQDP FWT+RPL+E+M+RAA DDVRFL I+
Sbjct: 123 EYISFVSLLADPRYCGMAYPEKEEVRTLLRQDPNFWTHRPLSEMMIRAATDDVRFLLSIH 182
Query: 210 HNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSI 269
MM+KL++ SLW L+VR LYCRCFCIN+N Y DWPPLP VPD + + VPE +ILS+
Sbjct: 183 EKMMEKLSKVSLWRLSVRSELYCRCFCINDNKYADWPPLPTVPDEIEPDVYVPEVDILSV 242
Query: 270 LDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311
LDVPPGKMGR+IGR+GSSI+ +K SCN EI IGGAKGPPD+V
Sbjct: 243 LDVPPGKMGRVIGRKGSSIMEVKASCNVEIHIGGAKGPPDRV 284
>gi|226533369|ref|NP_001143931.1| hypothetical protein [Zea mays]
gi|194696098|gb|ACF82133.1| unknown [Zea mays]
gi|195629726|gb|ACG36504.1| hypothetical protein [Zea mays]
gi|414881480|tpg|DAA58611.1| TPA: hypothetical protein ZEAMMB73_336636 [Zea mays]
Length = 344
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/322 (69%), Positives = 264/322 (81%), Gaps = 15/322 (4%)
Query: 3 SSPSHQTHIPL----SSDPDGKPIDSVV-----PIHIVTNASQLPAEFLEPSSERQLVIG 53
+S SHQ+ PL +SD D P D++ P HIVT QLP EFLEPS+ ++LVIG
Sbjct: 2 ASASHQSE-PLDSAATSDTDA-PSDNIPELPCPPCHIVTKPGQLPVEFLEPSAAQKLVIG 59
Query: 54 FDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRD 113
FDCEGVDLCR+G+LCIMQLAFPDA+YLVDAI+GG+ +++ACKPALES +ITKVIHDCKRD
Sbjct: 60 FDCEGVDLCRNGALCIMQLAFPDAVYLVDAIEGGKELIQACKPALESDHITKVIHDCKRD 119
Query: 114 SEALYFQFGIKLHNVVDTQIAYSLIEEQE--GRKRSPDDY--ISFVGLLADPRYCGISYQ 169
SEALYFQFGIKLHNV+DTQIAYSLI+EQE G+K++ DDY ISFV LLAD RYCGI Y
Sbjct: 120 SEALYFQFGIKLHNVMDTQIAYSLIQEQEQKGKKKTSDDYNYISFVSLLADKRYCGIPYP 179
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
EKEEVR+LLRQDP FWT RPL+++MVRAA DDVRFL IY MM+KLN+ SLW LAVR
Sbjct: 180 EKEEVRILLRQDPNFWTIRPLSDMMVRAATDDVRFLLNIYEKMMEKLNKVSLWRLAVRSE 239
Query: 230 LYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSIL 289
LYCRCFC+N+N + DW PLPPVPD + + VPE +ILS+LDVP GKMGR+IGR+GS+I+
Sbjct: 240 LYCRCFCLNDNQFADWSPLPPVPDGIEADVYVPEVDILSVLDVPHGKMGRVIGRKGSTIM 299
Query: 290 AIKESCNAEILIGGAKGPPDKV 311
+KESCN EI IGGAKGPPD+V
Sbjct: 300 VVKESCNVEIHIGGAKGPPDRV 321
>gi|242057747|ref|XP_002458019.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
gi|241929994|gb|EES03139.1| hypothetical protein SORBIDRAFT_03g025580 [Sorghum bicolor]
Length = 340
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/289 (73%), Positives = 249/289 (86%), Gaps = 4/289 (1%)
Query: 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQG 86
P HIVT QLP EFLEPS+ ++LVIGFDCEGVDLCR+G+LCIMQLAFPDA+YLVDAI+G
Sbjct: 29 PYHIVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDLCRNGALCIMQLAFPDAVYLVDAIEG 88
Query: 87 GETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE--GR 144
G+ +++ACKPALES +ITKVIHDCKRDSEALYFQFGIKLHNV+DTQIAYSLI+EQE G+
Sbjct: 89 GKELIQACKPALESDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIQEQEQEGK 148
Query: 145 KRSPDDY--ISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDV 202
K++ DDY ISFV LLAD R+CGI Y EKEEVR LLRQDP FWT RPL+++MVRAA DDV
Sbjct: 149 KKTSDDYNYISFVSLLADKRFCGIPYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDV 208
Query: 203 RFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVP 262
RFL IY MM+KL++ SLW LAVR LYCRCFC+N+N + DW PLPPVPD + + VP
Sbjct: 209 RFLLNIYEKMMEKLSKVSLWRLAVRSELYCRCFCLNDNQFADWSPLPPVPDDIEADVYVP 268
Query: 263 EEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311
E +ILS+LDVPPGKMGR+IGR+GS+I+A+KESCN EI IGGAKGPPD+V
Sbjct: 269 EVDILSVLDVPPGKMGRVIGRKGSTIMAVKESCNVEIHIGGAKGPPDRV 317
>gi|226491678|ref|NP_001141141.1| hypothetical protein [Zea mays]
gi|194702850|gb|ACF85509.1| unknown [Zea mays]
gi|413950404|gb|AFW83053.1| hypothetical protein ZEAMMB73_414768 [Zea mays]
Length = 339
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/287 (73%), Positives = 245/287 (85%), Gaps = 4/287 (1%)
Query: 29 HIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGE 88
HIVT QLP EFLEPS+ ++LVIGFDCEGVDLCR+G+LCIMQLAFPDA+YLVDAI+GG+
Sbjct: 30 HIVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDLCRNGALCIMQLAFPDAVYLVDAIEGGK 89
Query: 89 TVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE--GRKR 146
+++ACKPALES +ITKVIHDCKRDSEALYFQFGIKLHNV+DTQIAYSLIEEQE G+K
Sbjct: 90 ELIQACKPALESDHITKVIHDCKRDSEALYFQFGIKLHNVMDTQIAYSLIEEQEQEGKKM 149
Query: 147 SPDDY--ISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
+ DDY ISFV LLAD RYCGI Y EKEEVR LLRQDP FWT RPL+++MVRAA DDVRF
Sbjct: 150 TSDDYNYISFVSLLADKRYCGILYPEKEEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRF 209
Query: 205 LPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPEE 264
L IY MM+KL++ SLW LAVR LYCRCFC+++N + DW PLPPVPD + + VPE
Sbjct: 210 LLSIYAKMMEKLSKVSLWRLAVRSELYCRCFCLSDNQFADWSPLPPVPDDIEADVYVPEA 269
Query: 265 EILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311
+ILS+LDVPPGKMGR+IGR+GS+I+A+KE C EI IGGAKGPPD+V
Sbjct: 270 DILSVLDVPPGKMGRVIGRKGSTIMAVKECCKVEIHIGGAKGPPDRV 316
>gi|255637101|gb|ACU18882.1| unknown [Glycine max]
Length = 278
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/276 (75%), Positives = 235/276 (85%), Gaps = 8/276 (2%)
Query: 2 ASSPSHQ--THIPLSSDPDG------KPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIG 53
+SSPSH TH+PL G + +S VPIHIVT ASQLP EFLEPS + +LVIG
Sbjct: 3 SSSPSHSYLTHLPLHPSHQGDSEKRVEDDESRVPIHIVTAASQLPVEFLEPSPQSKLVIG 62
Query: 54 FDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRD 113
FDCEGVDLCR G+LC+MQLAFPDA+YLVDAI+GGE ++ ACKPALES+YITKVIHDCKRD
Sbjct: 63 FDCEGVDLCRKGTLCVMQLAFPDAVYLVDAIEGGEELIIACKPALESNYITKVIHDCKRD 122
Query: 114 SEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEE 173
SEALYFQFGIKL+NVVDTQIAYSLIEEQEGRKR DDYISFVGLLADPRYCG SY EKEE
Sbjct: 123 SEALYFQFGIKLNNVVDTQIAYSLIEEQEGRKRLRDDYISFVGLLADPRYCGKSYDEKEE 182
Query: 174 VRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCR 233
VRVLLRQDP+FW +RPL+E MVRAAADDVRFL YIYH MM+KLN++SLWYLAVRG LYCR
Sbjct: 183 VRVLLRQDPKFWRHRPLSEQMVRAAADDVRFLLYIYHQMMEKLNERSLWYLAVRGVLYCR 242
Query: 234 CFCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSI 269
CFC+N N++ DWP LPP+PD L +G P+EEILS+
Sbjct: 243 CFCLNSNNFADWPSLPPIPDNLNADGSDPKEEILSV 278
>gi|147797616|emb|CAN65003.1| hypothetical protein VITISV_023489 [Vitis vinifera]
Length = 393
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/373 (58%), Positives = 260/373 (69%), Gaps = 62/373 (16%)
Query: 1 MASSPSHQTHIPLSSD-----PDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFD 55
MA + HQT+IPL SD PD + S+VPI+IVT+ASQLP +FL PS RQLVIGFD
Sbjct: 1 MAFASPHQTYIPLPSDSGGQHPDHAALLSLVPIYIVTHASQLPKDFLVPSPVRQLVIGFD 60
Query: 56 CEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET----------------VVKACKPALE 99
CEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGE V+ CK E
Sbjct: 61 CEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGEKLMKACKPALESSYITKVIHDCKRDSE 120
Query: 100 SSYI---TKVIHDCKRDSEALYFQFGI-------------------------------KL 125
+ Y K+ + + L+ G ++
Sbjct: 121 ALYFQFGIKLHNVVDSQPKGLHLTVGAGGMGGYYLASVWDAGCSIPARPCGLVMALINEI 180
Query: 126 HNV-------VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLL 178
NV + +IAYSLIEEQ+GR+RSPDDYISFVGLLADPRYCGISY EK+EVRVLL
Sbjct: 181 TNVNRGYTVRFNIRIAYSLIEEQQGRRRSPDDYISFVGLLADPRYCGISYLEKKEVRVLL 240
Query: 179 RQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCIN 238
+QDP+FWTYRPL+ELMVRAAADDVRFLPYIY+ MM++LN+ SLW LAVRGALYCRCFC+N
Sbjct: 241 KQDPKFWTYRPLSELMVRAAADDVRFLPYIYYKMMEELNEHSLWKLAVRGALYCRCFCVN 300
Query: 239 ENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAIKESCNAE 298
+N+Y DWP LP +P+ L+V+G PEEEILS+L++P GKMG +IGR+G+SIL+IK+ C AE
Sbjct: 301 DNEYADWPSLPNMPENLMVDGKAPEEEILSVLEIPQGKMGCVIGRKGASILSIKQCCKAE 360
Query: 299 ILIGGAKGPPDKV 311
ILIGGAKGPPD V
Sbjct: 361 ILIGGAKGPPDMV 373
>gi|302789405|ref|XP_002976471.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii]
gi|300156101|gb|EFJ22731.1| hypothetical protein SELMODRAFT_104837 [Selaginella moellendorffii]
Length = 328
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/288 (62%), Positives = 230/288 (79%), Gaps = 1/288 (0%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ 85
+P+H+VT QLP F+EP++ L IG DCEGVDL RHG LCIMQLAF DAIYLVDA+Q
Sbjct: 17 MPVHLVTLPLQLPRCFVEPNAAHALAIGLDCEGVDLARHGRLCIMQLAFQDAIYLVDAVQ 76
Query: 86 GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
GG+ +++ACKPALES ++TKV+HDCKRDSEALYFQ GIKL+NV DTQIA+SLIE Q+GR+
Sbjct: 77 GGDALMQACKPALESPHVTKVVHDCKRDSEALYFQHGIKLNNVFDTQIAHSLIELQQGRQ 136
Query: 146 RSPDDYISFVGLLADPRYC-GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
PDD ISFV LLAD +YC G++Y EK+EVR LLR+DP+FWT+RPLT +M RAAADDVRF
Sbjct: 137 WIPDDCISFVDLLADAKYCVGVAYDEKDEVRSLLRKDPEFWTHRPLTNMMKRAAADDVRF 196
Query: 205 LPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPEE 264
L I+ NM+++L+ S W L++R +L+CRCFC ++ + +WP LP +P + E
Sbjct: 197 LLRIHRNMVQRLDAFSAWELSIRSSLFCRCFCGEDDGFANWPALPAIPGTCLAARHEDPE 256
Query: 265 EILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVS 312
E+L+++DVP G+MGRIIGR+G+SI+AIKESC A I IGG KGPPDK S
Sbjct: 257 EVLAVVDVPKGRMGRIIGRKGASIVAIKESCRANIFIGGTKGPPDKAS 304
>gi|302824807|ref|XP_002994043.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii]
gi|300138097|gb|EFJ04877.1| hypothetical protein SELMODRAFT_138110 [Selaginella moellendorffii]
Length = 328
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/288 (62%), Positives = 229/288 (79%), Gaps = 1/288 (0%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ 85
+P+H+VT QLP F+EP++ L IG DCEGVDL RHG LCIMQLAF DAIYLVDA+Q
Sbjct: 17 MPVHLVTLPLQLPRCFVEPNAAHALAIGLDCEGVDLARHGRLCIMQLAFQDAIYLVDAVQ 76
Query: 86 GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
GG+ +++ACK ALES ++TKV+HDCKRDSEALYFQ GIKL+NV DTQIA+SLIE Q+GR+
Sbjct: 77 GGDALMQACKAALESPHVTKVVHDCKRDSEALYFQHGIKLNNVFDTQIAHSLIELQQGRQ 136
Query: 146 RSPDDYISFVGLLADPRYC-GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
PDD ISFV LLAD +YC G++Y EK+EVR LLR+DP+FWT+RPLT +M RAAADDVRF
Sbjct: 137 WIPDDCISFVDLLADAKYCVGVAYDEKDEVRSLLRKDPEFWTHRPLTNMMKRAAADDVRF 196
Query: 205 LPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPEE 264
L I+ NM+++L+ S W L++R +L+CRCFC ++ + +WP LP +P + E
Sbjct: 197 LLRIHRNMVQRLDAFSAWELSIRSSLFCRCFCGEDDGFANWPALPAIPGTCLAARHEDPE 256
Query: 265 EILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVS 312
E+L+++DVP G+MGRIIGR+G+SI+AIKESC A I IGG KGPPDK S
Sbjct: 257 EVLAVVDVPKGRMGRIIGRKGASIVAIKESCRANIFIGGTKGPPDKAS 304
>gi|168060140|ref|XP_001782056.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666467|gb|EDQ53120.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 319
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 178/290 (61%), Positives = 223/290 (76%), Gaps = 2/290 (0%)
Query: 24 SVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA 83
S VP+HIVT+ +QLP FL P+ + VIGFDCEGVDL R+G LC+MQLAF +A+YLVDA
Sbjct: 2 SPVPVHIVTHPAQLPTSFLRPNPHQPFVIGFDCEGVDLARYGRLCVMQLAFDNAVYLVDA 61
Query: 84 IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEG 143
+ GG ++++CK LES YI KV HDCKRDSEALYFQ+ IKL+NV DTQIA+SL+EEQ G
Sbjct: 62 VLGGNALMQSCKLGLESPYIIKVCHDCKRDSEALYFQYNIKLNNVFDTQIAFSLLEEQRG 121
Query: 144 RKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR 203
+ PDDYISFV LLAD RYCG++Y EKEEVR+LLR+DPQFW +RP T +M R AADDVR
Sbjct: 122 KNWMPDDYISFVDLLADERYCGVAYDEKEEVRMLLRKDPQFWAHRPWTVMMKRVAADDVR 181
Query: 204 FLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPE 263
FL IY M+K L S W L VR +LYC+CFC+ + ++ P PP V+G++P+
Sbjct: 182 FLLCIYERMVKSLTDLSKWRLHVRSSLYCQCFCVGADCFLGGPLPPPPEQ--AVDGELPQ 239
Query: 264 EEILSILDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVSL 313
EE+L+++DVP GKMG +IGR+GSSIL+IK+ C A+I IGG KGPPDK S
Sbjct: 240 EEVLAVVDVPCGKMGLVIGRKGSSILSIKQCCRADIFIGGQKGPPDKASF 289
>gi|168010031|ref|XP_001757708.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690984|gb|EDQ77348.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 294
Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 174/271 (64%), Positives = 218/271 (80%), Gaps = 2/271 (0%)
Query: 41 FLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALES 100
FL+P ++ LVIGFDCEGVDL R+G LCIMQLAF DA+YLVDA+ GG ++++ACK LES
Sbjct: 3 FLQPRPDQPLVIGFDCEGVDLARYGRLCIMQLAFDDAVYLVDAVMGGNSLMQACKLGLES 62
Query: 101 SYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD 160
Y+ KV HDCKRDSEALYFQ+GIKL+NV DTQIAY+L++EQ G+K PDDYISFV LLAD
Sbjct: 63 PYVIKVCHDCKRDSEALYFQYGIKLNNVFDTQIAYTLLKEQHGKKWVPDDYISFVDLLAD 122
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
RYCG+ Y EKEEVRVLLR+DPQFW +RP T +M R AADDVRFL IY M+K L + S
Sbjct: 123 ERYCGMIYDEKEEVRVLLRKDPQFWAHRPWTVMMKRVAADDVRFLLRIYERMVKSLTELS 182
Query: 221 LWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRI 280
W L+VR +LYC+CFC ++ ++ PLPP P+ LI G++ +EE+L+++DVP GKMG +
Sbjct: 183 KWRLSVRSSLYCQCFCAGDDCFLGC-PLPPPPEQLI-NGELLQEEVLAVVDVPSGKMGLV 240
Query: 281 IGRRGSSILAIKESCNAEILIGGAKGPPDKV 311
IGR+GSSIL+IK+ C A+I IGG KGPPDK+
Sbjct: 241 IGRKGSSILSIKQCCRADIFIGGQKGPPDKI 271
>gi|356510063|ref|XP_003523760.1| PREDICTED: uncharacterized protein LOC100784751 [Glycine max]
Length = 327
Score = 336 bits (862), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 175/285 (61%), Positives = 217/285 (76%), Gaps = 11/285 (3%)
Query: 28 IHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGG 87
+ IVT AS+LPA FL PS +LVIGFD EGV L R G+LC+MQLAF DAIY+VD I+G
Sbjct: 22 VRIVTKASELPAAFLAPSPSSKLVIGFDNEGVKLGRDGTLCVMQLAFDDAIYIVDTIEGE 81
Query: 88 ETVV-KACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKR 146
E +V KACK ALES ++TKVIHDCKRDSEALYFQFGI+L+NVVDTQIAYSLIE QE K+
Sbjct: 82 ENLVMKACKAALESEHVTKVIHDCKRDSEALYFQFGIRLNNVVDTQIAYSLIESQEQGKK 141
Query: 147 SPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLP 206
+DYISFV LLADPRYCG++Y EKEEVR++L+++ +FW RPLTE + AAA DVR+L
Sbjct: 142 V-NDYISFVDLLADPRYCGVAYPEKEEVRLILKRNTEFWRERPLTEYKLNAAAADVRYLI 200
Query: 207 YIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVE-GDVPEEE 265
+IYH MM+KL+++SLWYLAVRG LYCRCFC N +WPPL P+ L E G PEEE
Sbjct: 201 HIYHKMMEKLSEKSLWYLAVRGGLYCRCFCGNAE---NWPPL--APEALKDENGKGPEEE 255
Query: 266 ILSILDVPPGKMGR-IIGRRGSSILAIKESCNAEILIGGAKGPPD 309
+ +LD+P G R +IG G +I ++++ +AEI I + PPD
Sbjct: 256 RIWVLDIPAGGWAREVIGDGGITIRNLRKASDAEIHI--VERPPD 298
>gi|413950403|gb|AFW83052.1| hypothetical protein ZEAMMB73_414768 [Zea mays]
Length = 235
Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 142/200 (71%), Positives = 165/200 (82%), Gaps = 4/200 (2%)
Query: 116 ALYFQFGIKLHNVVDTQIAYSLIEEQE--GRKRSPDDY--ISFVGLLADPRYCGISYQEK 171
ALYFQFGIKLHNV+DTQIAYSLIEEQE G+K + DDY ISFV LLAD RYCGI Y EK
Sbjct: 13 ALYFQFGIKLHNVMDTQIAYSLIEEQEQEGKKMTSDDYNYISFVSLLADKRYCGILYPEK 72
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALY 231
EEVR LLRQDP FWT RPL+++MVRAA DDVRFL IY MM+KL++ SLW LAVR LY
Sbjct: 73 EEVRTLLRQDPNFWTIRPLSDMMVRAATDDVRFLLSIYAKMMEKLSKVSLWRLAVRSELY 132
Query: 232 CRCFCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSILAI 291
CRCFC+++N + DW PLPPVPD + + VPE +ILS+LDVPPGKMGR+IGR+GS+I+A+
Sbjct: 133 CRCFCLSDNQFADWSPLPPVPDDIEADVYVPEADILSVLDVPPGKMGRVIGRKGSTIMAV 192
Query: 292 KESCNAEILIGGAKGPPDKV 311
KE C EI IGGAKGPPD+V
Sbjct: 193 KECCKVEIHIGGAKGPPDRV 212
>gi|148909381|gb|ABR17789.1| unknown [Picea sitchensis]
Length = 175
Score = 266 bits (681), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 127/164 (77%), Positives = 143/164 (87%), Gaps = 2/164 (1%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ 85
+PIHIVT ASQLP FLEPS ERQLVIGFDCEGVDL R+G LCIMQLAF DA+YLVDA++
Sbjct: 11 IPIHIVTEASQLPCAFLEPSPERQLVIGFDCEGVDLARYGRLCIMQLAFEDAVYLVDAVE 70
Query: 86 GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
GG +++ACKPALES Y+TKV+HDCKRDSEALYFQ+GIKL+NVVDTQIAY LIEEQEGRK
Sbjct: 71 GGHLLMQACKPALESVYVTKVVHDCKRDSEALYFQYGIKLNNVVDTQIAYPLIEEQEGRK 130
Query: 146 RSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP--QFWTY 187
+PD+YISFVGLLADPRYCG+SY EKEEVR LLR+ W Y
Sbjct: 131 WAPDEYISFVGLLADPRYCGVSYAEKEEVRTLLREGKLLALWIY 174
>gi|217072026|gb|ACJ84373.1| unknown [Medicago truncatula]
Length = 187
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 132/157 (84%), Gaps = 5/157 (3%)
Query: 3 SSPSHQ--THIPLSSDPDGKPIDSV---VPIHIVTNASQLPAEFLEPSSERQLVIGFDCE 57
++PS+Q TH+P++ + ++ VPIH+VT ASQLP +FLEPS ++VIGFDCE
Sbjct: 16 ATPSYQFITHLPIAPSSPSEKVEEEEPRVPIHVVTKASQLPVDFLEPSPHSKIVIGFDCE 75
Query: 58 GVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEAL 117
VDLCR G+LCI+QLAFPDAIYLVDAI+GG +++ACKPALES Y+TKVIHDCKRDSEAL
Sbjct: 76 AVDLCRDGALCIIQLAFPDAIYLVDAIEGGSVLIEACKPALESDYVTKVIHDCKRDSEAL 135
Query: 118 YFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF 154
YFQFGIKL+NVVDTQIAYSL+EEQEG++R PDDYIS
Sbjct: 136 YFQFGIKLNNVVDTQIAYSLLEEQEGQRRLPDDYISL 172
>gi|440796352|gb|ELR17461.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 536
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 104/210 (49%), Gaps = 44/210 (20%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVIH 108
VI DCEGV+L R G LC++Q+ +YLVD ++ G + + + LES+ + KV+H
Sbjct: 183 VIAVDCEGVNLSREGELCLVQIGTESKVYLVDVLEHGRALFEEGGLRALLESTKVRKVLH 242
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR------------------------ 144
DC+ DS+A+Y Q+G+ L NV DTQIAY++I+ Q G+
Sbjct: 243 DCRGDSDAMYHQYGVALQNVFDTQIAYAVIKRQMGQGTPLPVGLNTVLRAYATPILETKA 302
Query: 145 ---------KRSPDDYISFVGLLADP--------RYCGISYQEKEEVRVLLRQDPQFWTY 187
+R S AD R I+ +KEE R+ + +DP +W
Sbjct: 303 AQEQEKERAERKKQQQASGDKSAADAPFALDLVRRIDAINSFKKEE-RLKMVEDPTYWKT 361
Query: 188 RPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
RPLT MV A++DV FL +Y M LN
Sbjct: 362 RPLTSSMVGYASEDVMFLCLVYKQMHGFLN 391
>gi|452820227|gb|EME27272.1| 3'-5' exonuclease domain-containing protein / KH domain-containing
protein [Galdieria sulphuraria]
Length = 268
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 97/170 (57%), Gaps = 4/170 (2%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFPDAIYLVD--AIQGGETVVKACKPALESSYITKVIHD 109
I DCEGV+L R G LC++Q++ ++ D A+Q E + K LES I KV HD
Sbjct: 32 IAVDCEGVNLSRDGKLCLLQVSTGTKTFIFDVCALQK-ELFLTGFKEILESERILKVFHD 90
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRS-PDDYISFVGLLADPRYCGISY 168
C+ DS+AL++ +G++L NV+DTQ+A+ ++ EQ+G R P +I+ + + +
Sbjct: 91 CRYDSDALWWLYGVRLRNVLDTQVAFRILREQQGYTRQLPVKFITLLRRFVNQEISPQTL 150
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
+ K + QD FW RP+ + + AA DV+ L I N+++ L++
Sbjct: 151 ELKRTFKNRFSQDRNFWLRRPIPKDALVYAAYDVKKLLEIATNILRNLSE 200
>gi|427793085|gb|JAA61994.1| Putative egalitarian, partial [Rhipicephalus pulchellus]
Length = 759
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 119/215 (55%), Gaps = 10/215 (4%)
Query: 23 DSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLV 81
D + + ++T + A SS+ QLV D EGV+L G L ++QLA P A ++L
Sbjct: 344 DMLRGVRVITKVKECEALVSRLSSQHQLV-ALDTEGVNLGPQGPLTLVQLATPAAEVFLF 402
Query: 82 DAIQGGETVVKA-CKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEE 140
D + + + LE+ +ITKV+HDC+ DS AL+FQFGIKL NV DTQ A++ +++
Sbjct: 403 DVQSAPQLFTEGHLRDILEAEHITKVMHDCRNDSAALFFQFGIKLQNVFDTQAAHAALQQ 462
Query: 141 QE-GRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
Q+ G+ +S L Y G + +++V+ L R+D +FW+ RPL+E M+ AA
Sbjct: 463 QDVGKPVHKVKNVSLGTLCT--LYGGPANPRRDQVKSLYRRDQKFWSRRPLSEDMIFHAA 520
Query: 200 DDVR-FLPYIYHNMMKKLNQQS---LWYLAVRGAL 230
DV LP +Y + L +S LW L AL
Sbjct: 521 FDVFCLLPGVYGALQGALRPESEPLLWALCEEQAL 555
>gi|390352952|ref|XP_001177704.2| PREDICTED: uncharacterized protein LOC752254 [Strongylocentrotus
purpuratus]
Length = 456
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 105/188 (55%), Gaps = 11/188 (5%)
Query: 28 IHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGS-LCIMQLAFPDA-IYLVDAIQ 85
I V + +++ L+ S +VIG DCEGV L R G L ++Q++ D +L DA +
Sbjct: 245 IDYVEDCNRVLDPILDQSRRETVVIGLDCEGVGLGRAGGCLTLVQISTWDGKAFLFDAFK 304
Query: 86 GGETVV--KACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEG 143
+ + + K LE + I KVIHDCK D+ +LY FG+KL NV DT IA I EQ
Sbjct: 305 NPQLLKGNSSLKKILEHNSILKVIHDCKSDAYSLYHGFGVKLKNVFDTSIAMRTIMEQLN 364
Query: 144 RKRSPD-DYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMV-RAAADD 201
R RS + + LL + G S+++ + V+ +L + P FW RPLTE M+ AA+D
Sbjct: 365 RNRSYQVGFKALCELLGE----GASHKDDDFVKKML-ETPDFWKIRPLTEEMIYYAASDA 419
Query: 202 VRFLPYIY 209
+ +P +Y
Sbjct: 420 LCLVPSVY 427
>gi|391343177|ref|XP_003745889.1| PREDICTED: uncharacterized protein LOC100902998 [Metaseiulus
occidentalis]
Length = 842
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 101/175 (57%), Gaps = 7/175 (4%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVVKA-CKPALESSYITKVIH 108
V+ D EGV+L G + ++Q+A P+ +Y+ D + +V+ K LES + KV+H
Sbjct: 371 VVAVDAEGVNLGIKGPMTLLQIATPEKQVYIFDLLSNPALLVEGKLKEILESEKLLKVMH 430
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD-PRYCGIS 167
DC+ DS ALY QFGI L NV DTQ A++++++Q+ K P + + L Y G
Sbjct: 431 DCRNDSAALYHQFGITLKNVFDTQAAHAVLQQQDHAK--PVYKVKNISLATLCEMYGGPL 488
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL--PYIYHNMMKKLNQQS 220
+++++ L R+D +FW+ RPLT+ M+ AA DV L P + N+ + ++S
Sbjct: 489 NPRRDQMKALYRRDQKFWSRRPLTDDMIFHAAFDVICLSAPSVVENLRSAIREES 543
>gi|218749845|ref|NP_001136335.1| egalitarian [Nasonia vitripennis]
Length = 829
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 93/173 (53%), Gaps = 13/173 (7%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLA-FPDAIYLVDAI------QGGETVVKACKPALESSYI 103
V+ FDCEG+++ G L ++Q+ IY+ D I Q G + LES +
Sbjct: 411 VVSFDCEGINVGPKGRLTLLQIGTMSGLIYIFDLITCPNILQAG-----GLQKLLESENV 465
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KVIHDCK DS L+ QFGI L N+ DTQ A+S+IE Q K + + L D Y
Sbjct: 466 IKVIHDCKNDSANLFHQFGITLVNIFDTQAAHSVIEYQNTGKPVYKVKNANLNTLCD-LY 524
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
S KE+++ + R+D ++W RPLT M+ A+ DV+ L + +N M KL
Sbjct: 525 GAPSNVLKEQLKNIYRRDQRYWARRPLTRDMIVYASSDVQSLVPLIYNAMSKL 577
>gi|405974890|gb|EKC39502.1| Exonuclease 3'-5' domain-containing protein 1 [Crassostrea gigas]
Length = 456
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 94/180 (52%), Gaps = 6/180 (3%)
Query: 48 RQLVIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVVKA-CKPALESSYITK 105
R+ V+G DCEG+ L G L ++Q+ +YL D ++ + + LES + K
Sbjct: 25 RESVLGVDCEGISLGAEGPLTLVQVGDSAGHVYLFDILKDKRLLTQGKLGTLLESQTVVK 84
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V+H C DS ALY QFG+ L NV DTQ+A +I+E +GR+ +P + + +
Sbjct: 85 VMHSCSNDSAALYHQFGVTLRNVFDTQVANIIIQEHKGRRLAP--LLKLAAICEEYDGKA 142
Query: 166 ISYQEKEEVRV-LLRQDPQFWTYRPLTELMVRAAADDVRFL-PYIYHNMMKKLNQQSLWY 223
S + K+ V+ + + W RP+TE M+ AA DV + P +Y N + L + L Y
Sbjct: 143 FSTELKDNVQTEWITETSDLWAKRPMTEDMILYAAGDVTVIVPEVYENQKRYLEENKLMY 202
>gi|241670620|ref|XP_002399861.1| conserved hypothetical protein [Ixodes scapularis]
gi|215506210|gb|EEC15704.1| conserved hypothetical protein [Ixodes scapularis]
Length = 853
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 94/167 (56%), Gaps = 5/167 (2%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVVKA-CKPALESSYITKVIH 108
V+ D EGV+L G L ++QLA ++L D + + K LES I KV+H
Sbjct: 550 VLALDAEGVNLGPRGPLTLLQLATAAGEVFLFDVQSTPQLFDEGKLKDILESQTIVKVVH 609
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ-EGRKRSPDDYISFVGLLADPRYCGIS 167
DC+ DS AL++QFGI+L NV DTQ A++ +++Q +G+ +S L Y G
Sbjct: 610 DCRNDSAALFYQFGIRLQNVFDTQAAHATLQQQDQGKPVHKVKNVSLGTLCG--LYGGPP 667
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214
+E+V+ L R+D +FW+ RPL+E MV AA DV L H+ ++
Sbjct: 668 NPRREQVKSLYRRDQKFWSRRPLSEDMVFHAAFDVFCLLPAVHDALR 714
>gi|332021038|gb|EGI61427.1| Exonuclease 3'-5' domain-containing protein 1 [Acromyrmex
echinatior]
Length = 832
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 108/187 (57%), Gaps = 10/187 (5%)
Query: 43 EPSSERQLVIGFDCEGVDLCRHGSLCIMQL-AFPDAIYLVDAIQG-GETVVKACKPALES 100
+P S+ ++V+ FDCEG++L G L ++Q+ Y+ D + G + LE
Sbjct: 409 KPPSDGKVVVSFDCEGINLGVRGQLTLVQIGTMSGQAYVFDLVTCPGLVQAGGLQKLLEH 468
Query: 101 SYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL--L 158
++TKVIHDC+ DS LY QF I L NV DTQ A+++++ Q+ K P + V L L
Sbjct: 469 PHVTKVIHDCRNDSVNLYNQFNITLTNVFDTQAAHAVLQFQDTGK--PVYKVKNVNLNTL 526
Query: 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLT-ELMVRAAADDVRFLPYIYHNMMK--K 215
D Y KE+++ + R+D ++W+ RP+T E+++ A++D + +P +Y+ M + K
Sbjct: 527 CD-HYNAPCNPLKEQLKNIYRKDQRYWSRRPITREMLIYASSDVLSLVPQVYNAMSRLIK 585
Query: 216 LNQQSLW 222
Q+SL+
Sbjct: 586 PEQESLF 592
>gi|401408493|ref|XP_003883695.1| Exonuclease 3'-5' domain-like-containing protein 1, related
[Neospora caninum Liverpool]
gi|325118112|emb|CBZ53663.1| Exonuclease 3'-5' domain-like-containing protein 1, related
[Neospora caninum Liverpool]
Length = 355
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 85/173 (49%), Gaps = 10/173 (5%)
Query: 41 FLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV---KACKPA 97
FL RQLV DCEGV L R G +C +Q+A L+DA + G VV K K
Sbjct: 68 FLTGDFSRQLV-ALDCEGVALGRFGRMCTVQIATSTHTLLLDAFKTG--VVGGNKKLKEI 124
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LES +I KV HDC+ D+ AL Q I+L NV DTQ+A+ + EQ+G R
Sbjct: 125 LESPHIVKVCHDCREDASALLHQHTIRLRNVFDTQVAHQIWSEQKGETRFQASLSELFRS 184
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYH 210
+ R G++ Q K + DP W RPL ++R A V L + H
Sbjct: 185 FLNLRDGGVAKQAKSA----MEADPSVWCQRPLPTDLLRYAVFGVSHLLDLAH 233
>gi|390352954|ref|XP_001198019.2| PREDICTED: uncharacterized protein LOC762429 [Strongylocentrotus
purpuratus]
Length = 468
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 99/174 (56%), Gaps = 11/174 (6%)
Query: 42 LEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDA-IYLVDAIQGGETVV--KACKPA 97
L+ S+ + +VIG DCEGV L G L ++Q++ D +L DA + + + + K
Sbjct: 262 LDQSTRQTVVIGLDCEGVRLGTAKGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKI 321
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPD-DYISFVG 156
LE + I KVIHDCK D+ L+ FG+KL NV DT IA I EQ R RS + +
Sbjct: 322 LEHNSILKVIHDCKSDTYGLHHGFGVKLKNVFDTSIAMRTIMEQVNRYRSYRVGFKALCE 381
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMV-RAAADDVRFLPYIY 209
LL + G ++++ + V+ +L + P FW RPLTE M+ AA+D + +P IY
Sbjct: 382 LLGE----GATHKDDDFVKKML-ETPDFWKIRPLTEEMIYYAASDALCLIPSIY 430
>gi|224009215|ref|XP_002293566.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970966|gb|EED89302.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 291
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 18/163 (11%)
Query: 44 PSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGET---VVKACKPALE 99
S ++ I FDCEGV+L R GS+ I+ + F + +YL+D G E +V+A K E
Sbjct: 45 SSIDKDAKIAFDCEGVNLSRLGSVEIVSICFSSSEVYLIDF--GKEKCPKIVEAVKELFE 102
Query: 100 SSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLA 159
S +TK+IHDC+ D +ALY GIKL NV DT + I ++G ++ +D +S+ G+
Sbjct: 103 CSTLTKIIHDCRMDFDALYHNHGIKLVNVHDTSAFHDFIGYEKG--KNLNDTLSYYGIRV 160
Query: 160 DPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDV 202
+ E + + + +P FW RPLT+ M+ A+ DV
Sbjct: 161 NT----------ERDKSVYKSNPNFWAARPLTKKMIDWASSDV 193
>gi|390352964|ref|XP_003728008.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
[Strongylocentrotus purpuratus]
Length = 271
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 97/171 (56%), Gaps = 10/171 (5%)
Query: 45 SSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDA-IYLVDAIQGGETVV--KACKPALES 100
S +VIG DCEGV+L R G L ++Q++ D +L DA + + + + K LE
Sbjct: 100 SRRESVVIGLDCEGVNLGERGGCLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKILEH 159
Query: 101 SYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPD-DYISFVGLLA 159
+ I KVIHDCK D+ AL+ +FG+ L NV DT IA + + EQ R R+ + + + LL
Sbjct: 160 NSILKVIHDCKCDTHALHNEFGVILKNVFDTSIAMTTLMEQLNRYRTYRIGFKALLELLG 219
Query: 160 DPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMV-RAAADDVRFLPYIY 209
+ G +++ + ++ +R P W RPLTE M+ AA+D + +P +Y
Sbjct: 220 E----GAPHRDDDAIKRKMRHTPDIWKSRPLTEEMIYYAASDALCLVPSLY 266
>gi|357618157|gb|EHJ71251.1| egalitarian [Danaus plexippus]
Length = 854
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 95/172 (55%), Gaps = 7/172 (4%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVVKA-CKPALESSYITKVIH 108
+I FDCEG++L G L + Q+A + +YL+D + VV+ K LES + K+IH
Sbjct: 412 IISFDCEGINLGLKGVLTLCQIATMNGEVYLLDILACPAMVVEGKIKELLESECVVKIIH 471
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIE-EQEGRKRSPDDYISFVGLLADPRYCGIS 167
DC+ DS LY QF I L NV DTQ A+++++ +Q+G +S L Y
Sbjct: 472 DCRNDSVNLYNQFEITLKNVFDTQAAHAVLQLQQQGVPVYKVKNLSLNALCE--LYNAPM 529
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL--PYIYHNMMKKLN 217
KE+++ + R+D ++W RPLT+ M+ AA DV L P IY M +N
Sbjct: 530 NPMKEQLKNVYRRDQRYWARRPLTKDMIIYAASDVLSLVNPAIYAYMSANIN 581
>gi|91084227|ref|XP_969046.1| PREDICTED: similar to egalitarian CG4051-PA [Tribolium castaneum]
gi|270009271|gb|EFA05719.1| egalitarian [Tribolium castaneum]
Length = 812
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 44 PSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAI-YLVDAIQGGETVVKACKPALESSY 102
P + Q+V+G DCEG++L G L ++Q+A Y+ D I + K LESS
Sbjct: 409 PFDDDQVVVGLDCEGINLGVKGQLTLLQIATMSGFSYVFDLITCPGMIDSGLKKLLESSQ 468
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADP 161
I K++HDC+ DS L+ QF I L+ + DTQ A++++ QE GR P V L A
Sbjct: 469 IVKIVHDCRNDSVNLFNQFNITLNTIFDTQAAHAVLTFQETGR---PVYKAKSVALNALC 525
Query: 162 RYCGISYQ-EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL--PYIYHNMMKKLNQ 218
+ G K++++ + R+D ++W+ RPLT M+ A+ DV L IY+ M K +
Sbjct: 526 EHYGAPINPMKDQLKNIYRRDQKYWSRRPLTREMILYASADVLSLVNEKIYYPMSKAIKM 585
Query: 219 QS 220
++
Sbjct: 586 EN 587
>gi|383858820|ref|XP_003704897.1| PREDICTED: uncharacterized protein LOC100875978 [Megachile
rotundata]
Length = 823
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 101/181 (55%), Gaps = 16/181 (8%)
Query: 43 EPSSERQLVIGFDCEGVDLCRHGSLCIMQL-AFPDAIYLVDA------IQGGETVVKACK 95
+P + ++VI FDCEG++L G L ++Q+ Y+ D +Q G +
Sbjct: 405 KPPPDGKIVIAFDCEGINLGVKGQLTLVQIGTMSGQAYVFDLFTCPNLVQAG-----GLQ 459
Query: 96 PALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV 155
LE + + KVIHDC+ DS LY QF I L+NV DTQ A+++++ QE K P + V
Sbjct: 460 KLLEHNDVIKVIHDCRNDSVNLYRQFKIMLNNVFDTQAAHAVLQFQETGK--PVYKVKNV 517
Query: 156 GLLADPRYCGISYQE-KEEVRVLLRQDPQFWTYRPLT-ELMVRAAADDVRFLPYIYHNMM 213
L + G Y KE+++ + R + ++W RPLT ++++ A++D + +P IY++M
Sbjct: 518 NLNTLCDHYGAPYNPLKEQLKNIYRNNQRYWCRRPLTRDMLIYASSDVLSLVPQIYNSMS 577
Query: 214 K 214
K
Sbjct: 578 K 578
>gi|195119318|ref|XP_002004178.1| GI19770 [Drosophila mojavensis]
gi|193909246|gb|EDW08113.1| GI19770 [Drosophila mojavensis]
Length = 991
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 93/181 (51%), Gaps = 7/181 (3%)
Query: 42 LEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALE 99
L E + I DCEG++L G + ++++ + +Q +V K LE
Sbjct: 530 LAKDEEHNIAISLDCEGINLGIKGEITLIEIGTARGEAFLFDVQSCPAMVSDGGLKTLLE 589
Query: 100 SSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLL 158
+ KVIHDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L
Sbjct: 590 HDQVIKVIHDCRNDAVNLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLC 649
Query: 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
+Y K++++ + R+D +FW RPLT M+ AA DV L I+ + L Q
Sbjct: 650 --EQYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDV--LVLIHEQLFGTLAQ 705
Query: 219 Q 219
Q
Sbjct: 706 Q 706
>gi|194885564|ref|XP_001976457.1| GG20003 [Drosophila erecta]
gi|190659644|gb|EDV56857.1| GG20003 [Drosophila erecta]
Length = 824
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 7/177 (3%)
Query: 45 SSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSY 102
+ +V+ DCEG++L G + ++++ + +Q +V K LE
Sbjct: 554 AKNENIVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQ 613
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADP 161
+ KVIHDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L
Sbjct: 614 VIKVIHDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISLNSLC--E 671
Query: 162 RYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY--IYHNMMKKL 216
+Y K++++ + R+D +FW RPLT M+ AA DV L + ++ N+ +++
Sbjct: 672 QYNAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQI 728
>gi|195347186|ref|XP_002040135.1| GM15515 [Drosophila sechellia]
gi|194135484|gb|EDW57000.1| GM15515 [Drosophila sechellia]
Length = 1035
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+V+ DCEG++L G + ++++ + +Q +V K LE + KVI
Sbjct: 624 IVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVI 683
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 684 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISLNSLCE--QYNAP 741
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY--IYHNMMKKL 216
K++++ + R+D +FW RPLT M+ AA DV L + ++ N+ +++
Sbjct: 742 CNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQI 793
>gi|195455204|ref|XP_002074609.1| GK23167 [Drosophila willistoni]
gi|194170694|gb|EDW85595.1| GK23167 [Drosophila willistoni]
Length = 1008
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 98/181 (54%), Gaps = 7/181 (3%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+VI DCEG++L G + ++++ + +Q +V K LE + KVI
Sbjct: 555 IVISLDCEGINLGLKGEITLIEIGTGRGEAFLFDVQSCPAMVSDGGLKTLLEHEQVIKVI 614
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 615 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLCE--QYNAP 672
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY--IYHNMMKKLNQQSLWYL 224
K++++ + R+D +FW RPLT M+ AA DV L + ++ N+ +++ ++ L
Sbjct: 673 CNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQIKPENRQLL 732
Query: 225 A 225
+
Sbjct: 733 S 733
>gi|195401414|ref|XP_002059308.1| GJ18283 [Drosophila virilis]
gi|194142314|gb|EDW58720.1| GJ18283 [Drosophila virilis]
Length = 1176
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 7/176 (3%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYIT 104
E + I DCEG++L G + ++++ + +Q +V K LE +
Sbjct: 722 ESNIAISLDCEGINLGIKGEITLIEIGTARGEAFLFDVQSCPAMVSDGGLKTLLEHDQVI 781
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRY 163
KVIHDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 782 KVIHDCRNDAVNLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLC--EQY 839
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
K++++ + R+D +FW RPLT M+ AA DV L I+ + L QQ
Sbjct: 840 NAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDV--LVLIHDQLFGSLAQQ 893
>gi|38681451|gb|AAB49975.2| egalitarian [Drosophila melanogaster]
Length = 993
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+V+ DCEG++L G + ++++ + +Q +V K LE + KVI
Sbjct: 545 IVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVI 604
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 605 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISLNSLCE--QYNAP 662
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY--IYHNMMKKL 216
K++++ + R+D +FW RPLT M+ AA DV L + ++ N+ +++
Sbjct: 663 CNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQI 714
>gi|221468312|ref|NP_726360.3| egalitarian [Drosophila melanogaster]
gi|220902361|gb|AAF47054.4| egalitarian [Drosophila melanogaster]
Length = 1004
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+V+ DCEG++L G + ++++ + +Q +V K LE + KVI
Sbjct: 556 IVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVI 615
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 616 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISLNSLCE--QYNAP 673
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY--IYHNMMKKL 216
K++++ + R+D +FW RPLT M+ AA DV L + ++ N+ +++
Sbjct: 674 CNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQI 725
>gi|195586140|ref|XP_002082836.1| GD25020 [Drosophila simulans]
gi|194194845|gb|EDX08421.1| GD25020 [Drosophila simulans]
Length = 860
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+V+ DCEG++L G + ++++ + +Q +V K LE + KVI
Sbjct: 554 IVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVI 613
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 614 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISLNSLCE--QYNAP 671
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY--IYHNMMKKL 216
K++++ + R+D +FW RPLT M+ AA DV L + ++ N+ +++
Sbjct: 672 CNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQI 723
>gi|33589402|gb|AAQ22468.1| RE33408p [Drosophila melanogaster]
Length = 1004
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+V+ DCEG++L G + ++++ + +Q +V K LE + KVI
Sbjct: 556 IVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVI 615
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 616 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISLNSLCE--QYNAP 673
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY--IYHNMMKKL 216
K++++ + R+D +FW RPLT M+ AA DV L + ++ N+ +++
Sbjct: 674 CNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQI 725
>gi|194755160|ref|XP_001959860.1| GF11823 [Drosophila ananassae]
gi|190621158|gb|EDV36682.1| GF11823 [Drosophila ananassae]
Length = 1018
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+V+ DCEG++L G + ++++ + +Q ++ K LE + KVI
Sbjct: 570 IVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMITDGGLKTVLEHEQVIKVI 629
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 630 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQESGKQVYKAKYISLNSLC--EQYNAP 687
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY--IYHNMMKKL 216
K++++ + R+D +FW RPLT M+ AA DV L + ++ N+ +++
Sbjct: 688 CNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQI 739
>gi|195489284|ref|XP_002092670.1| GE11539 [Drosophila yakuba]
gi|194178771|gb|EDW92382.1| GE11539 [Drosophila yakuba]
Length = 1009
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+V+ DCEG++L G + ++++ + +Q +V K LE + KVI
Sbjct: 561 IVVSLDCEGINLGLKGEITLIEIGTTRGEAFLFDVQSCPAMVTDGGLKTVLEHDQVIKVI 620
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 621 HDCRNDAANLYLQFGILLRNVFDTQSAHAILQYQESGKQVYKAKYISLNSLC--EQYNAP 678
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY--IYHNMMKKL 216
K++++ + R+D +FW RPLT M+ AA DV L + ++ N+ +++
Sbjct: 679 CNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVLIHDQLFGNLARQI 730
>gi|195154607|ref|XP_002018213.1| GL17589 [Drosophila persimilis]
gi|194114009|gb|EDW36052.1| GL17589 [Drosophila persimilis]
Length = 831
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 5/159 (3%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+V+ DCEG++L G + ++++ + +Q +V K LE + KVI
Sbjct: 566 IVVSLDCEGINLGLKGEITLIEIGTARGEAFLFDVQSCPAMVTDGGLKTVLEHEQVIKVI 625
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 626 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLCE--QYNAP 683
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
K++++ + R+D +FW RPLT M+ AA DV L
Sbjct: 684 CNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVL 722
>gi|198458527|ref|XP_002138553.1| GA24836 [Drosophila pseudoobscura pseudoobscura]
gi|198136373|gb|EDY69111.1| GA24836 [Drosophila pseudoobscura pseudoobscura]
Length = 830
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 86/159 (54%), Gaps = 5/159 (3%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+V+ DCEG++L G + ++++ + +Q +V K LE + KVI
Sbjct: 565 IVVSLDCEGINLGLKGEITLIEIGTARGEAFLFDVQSCPAMVTDGGLKTVLEHEQVIKVI 624
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 625 HDCRNDAANLYLQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLCE--QYNAP 682
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
K++++ + R+D +FW RPLT M+ AA DV L
Sbjct: 683 CNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDVLVL 721
>gi|158292666|ref|XP_314043.4| AGAP005155-PA [Anopheles gambiae str. PEST]
gi|157017099|gb|EAA09562.4| AGAP005155-PA [Anopheles gambiae str. PEST]
Length = 1064
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 102/196 (52%), Gaps = 13/196 (6%)
Query: 22 IDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDA-IYL 80
I +V VTNA ++ S E Q ++ FDCEG++L G + ++QL ++
Sbjct: 535 ISTVKESLFVTNA------IMKSSLEEQAIVSFDCEGINLGVRGQITMVQLGTTRGEAFI 588
Query: 81 VDAIQGGETVVKA-CKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
D + VV+ K LES + KVIHDC+ DS L+ QF I L NV DTQ A+++++
Sbjct: 589 FDIATCPDMVVEGGLKEILESEKVIKVIHDCRNDSVNLFNQFQILLRNVFDTQSAHAVLQ 648
Query: 140 EQ-EGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAA 198
Q +G++ +S L Y K++++ + R+D ++W RPLT M+ A
Sbjct: 649 FQDQGKQVYKVKNVSLNTLCE--MYNATVNPMKDQLKNVYRRDQKYWARRPLTRDMLLYA 706
Query: 199 ADDVRFL--PYIYHNM 212
A DV L +Y NM
Sbjct: 707 AGDVLILINEQLYLNM 722
>gi|242008039|ref|XP_002424820.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212508370|gb|EEB12082.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 843
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 104/192 (54%), Gaps = 7/192 (3%)
Query: 28 IHIVTNASQLPAEFLEPSSE-RQLVIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQ 85
I+ + ++Q+ + L + E ++V+ DCEG++L G L ++Q+ + +Y+ D +
Sbjct: 376 INTIKESNQIIDDILSKAKEGSEVVVSVDCEGINLGSKGKLTLIQIGTMNGNVYVFDLVT 435
Query: 86 GGETV-VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
L S + KVIHDC+ DS +YFQFG+ L NV DT+ A+++I+ QE
Sbjct: 436 CSNLFEAGGLARLLTSDQVIKVIHDCRNDSSTIYFQFGVILRNVFDTKSAHAVIQMQEMG 495
Query: 145 KRSPDDYISFVGLLADPRYCGI-SYQEKEEVRVLLRQDPQFWTYRPLT-ELMVRAAADDV 202
K P + V L + + KE + + ++D + W RPL+ +++V AAAD +
Sbjct: 496 K--PVHKVKDVSLNTLYEIYNLPTNPMKEYFKNIYKKDQKIWGRRPLSRDMIVYAAADVL 553
Query: 203 RFLPYIYHNMMK 214
+P++Y M+K
Sbjct: 554 SLVPHLYSLMLK 565
>gi|380014058|ref|XP_003691060.1| PREDICTED: uncharacterized protein LOC100862929 [Apis florea]
Length = 825
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 101/177 (57%), Gaps = 8/177 (4%)
Query: 43 EPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKA--CKPALES 100
+PS + ++V+ FDCEG++L G L ++Q+ V + +V+A + LE
Sbjct: 404 KPSPDGKIVVSFDCEGINLGVKGQLTLVQIGTMSGQAYVFDLFACPNLVQAGGLQKLLEH 463
Query: 101 SYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL--L 158
+ KVIHDC+ DS LY QF I L+NV DTQ A+++++ QE K P + V L L
Sbjct: 464 KDVIKVIHDCRNDSVNLYRQFKIMLNNVFDTQAAHAVLQFQETGK--PVYKVKNVNLNTL 521
Query: 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLT-ELMVRAAADDVRFLPYIYHNMMK 214
D Y S KE+++ + R + ++W RPLT ++++ A++D + +P IY +M +
Sbjct: 522 CD-HYGAPSNPLKEQLKNIYRNNQRYWCRRPLTRDMLIYASSDVLSLVPQIYISMSR 577
>gi|328780055|ref|XP_623215.2| PREDICTED: hypothetical protein LOC550822 isoform 1 [Apis
mellifera]
Length = 664
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 101/182 (55%), Gaps = 18/182 (9%)
Query: 43 EPSSERQLVIGFDCEGVDLCRHGSLCIMQLA-FPDAIYLVDA------IQGGETVVKACK 95
+P S+ ++V+ FDCEG++L G L ++Q+ Y+ D +Q G +
Sbjct: 243 KPPSDGKIVVSFDCEGINLGVKGQLTLVQIGTMSGQAYVFDLFACPNLVQAG-----GLQ 297
Query: 96 PALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV 155
LE + KVIHDC+ DS LY QF I L+NV DTQ A+++++ QE K P + V
Sbjct: 298 KLLEHKDVIKVIHDCRNDSVNLYRQFKIMLNNVFDTQAAHAVLQFQETGK--PVYKVKNV 355
Query: 156 GL--LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLT-ELMVRAAADDVRFLPYIYHNM 212
L L D Y S KE+++ + R + ++W RPLT ++++ A++D + +P IY +M
Sbjct: 356 NLNTLCD-HYGAPSNPLKEQLKNIYRNNQRYWCRRPLTRDMLIYASSDVLSLVPQIYISM 414
Query: 213 MK 214
+
Sbjct: 415 SR 416
>gi|403346454|gb|EJY72625.1| 3'-5' exonuclease domain containing protein [Oxytricha trifallax]
Length = 661
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 7/176 (3%)
Query: 41 FLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALES 100
FL + E +++G DCEG L R L ++Q+ D +L D ++ + K K LE
Sbjct: 83 FLLQNYESCIILGVDCEG--LSRTQPLSLVQIGNEDKCFLFDILKLN-GLPKCLKNVLED 139
Query: 101 SYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD 160
I K+ HD D+ AL Q+ + V DTQIA+ +I + R D IS LL +
Sbjct: 140 PDIIKIFHDFCEDTAALVQQYNVHCDRVFDTQIAHRIINQDSDEPR--DQNISLNHLLKE 197
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
Y + +KE + ++++P FW RPL+++M AA DV FLP +Y MM+
Sbjct: 198 --YIQVENDQKETICSYMKKEPGFWWQRPLSQIMQEYAAQDVIFLPSVYGTMMRNF 251
>gi|405950541|gb|EKC18522.1| Exonuclease 3'-5' domain-containing protein 1 [Crassostrea gigas]
Length = 586
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 6/179 (3%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLA-FPDAIYLVDAIQGGETVVKA-CKPALESSYIT 104
ER+ V+ DCEGV L G L ++Q+ + +YL D ++ + + + LES I
Sbjct: 152 ERERVLAVDCEGVSLGVDGPLTLVQVGNYSGEVYLFDILRNKDLLSRGRLGSLLESPNII 211
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
KVI C DS ALY QF + L NV DTQ+A +I+E +GR+ +P + + +
Sbjct: 212 KVIQSCSNDSAALYHQFKVTLKNVFDTQVANLVIQEHQGRRLAP--LLKLAAICEEYGGK 269
Query: 165 GISYQEKEEVRV-LLRQDPQFWTYRPLTELMVRAAADDVR-FLPYIYHNMMKKLNQQSL 221
S + K++V+ + W RP+T+ M+ AA DV+ +P +Y N + L +L
Sbjct: 270 KFSTELKDDVQAEWMTVTGDLWAKRPMTDEMILYAAGDVKAIIPEVYENQKRYLEDNNL 328
>gi|170041336|ref|XP_001848422.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167864931|gb|EDS28314.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 982
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 7/215 (3%)
Query: 3 SSPSHQTHIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC 62
SSP H + + K + + I V + + L+ + E Q VI FDCEG++L
Sbjct: 457 SSPVHSNNYFIGDTWKIKVLQNTRVISTVKESLFVTQAILKSAYEDQTVISFDCEGINLG 516
Query: 63 RHGSLCIMQLAFPDA-IYLVDAIQGGETVVKA-CKPALESSYITKVIHDCKRDSEALYFQ 120
G + ++QL ++ D + V K LE+ + KVIHDC+ DS LY Q
Sbjct: 517 VRGQITMIQLGTTRGEAFIFDVATCPDMVPHGGIKQVLEAEKVIKVIHDCRNDSVNLYNQ 576
Query: 121 FGIKLHNVVDTQIAYSLIEEQ-EGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLR 179
F I L NV DTQ A+++++ Q +G++ +S L Y K++++ + R
Sbjct: 577 FQIMLRNVFDTQSAHAVLQFQDQGKQVYKVKNVSLNTLCE--MYNATVNPMKDQLKNVYR 634
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFL--PYIYHNM 212
+D ++W RPLT M+ AA DV L +Y NM
Sbjct: 635 RDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNM 669
>gi|389582415|dbj|GAB65153.1| 3'-5' exonuclease domain containing protein, partial [Plasmodium
cynomolgi strain B]
Length = 300
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 35/189 (18%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGE--------------------TV 90
+I D EG +L ++G +CIMQ +Y + QGG +V
Sbjct: 104 IIAVDFEGTNLGKYGKVCIMQ------VYTEERTQGGTRQKSECLSREKYYIFDLLKMSV 157
Query: 91 VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDD 150
+K+ K +E+ K++HDC+ DS ALY Q GIK NV DT A+ L+ E + +S D
Sbjct: 158 IKSVKKIIENKKTLKLVHDCREDSSALYNQLGIKFENVYDTSRAHMLLME---KNKSNDI 214
Query: 151 Y-ISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF---LP 206
Y +SF+ LL D Y GI + ++ + ++ + W RPL+++ + A +V++ L
Sbjct: 215 YQVSFLQLLND--YLGIKDECLSSIKKEMYKNEKIWEVRPLSKMSIIYALKNVKYLFPLY 272
Query: 207 YIYHNMMKK 215
I+ NM+ K
Sbjct: 273 RIFDNMLSK 281
>gi|195026828|ref|XP_001986344.1| GH20576 [Drosophila grimshawi]
gi|193902344|gb|EDW01211.1| GH20576 [Drosophila grimshawi]
Length = 995
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 7/176 (3%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK--ACKPALESSYIT 104
E + + DCEG++L G + ++++ + +Q +V K LE +
Sbjct: 541 ESNIAVSLDCEGINLGVKGEITLIEIGTARGEAFLFDVQTCPAMVSDGGLKTLLEHDQVI 600
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRY 163
KVIHDC+ D+ LY QFGI L NV DTQ A+++++ QE G++ YIS L +Y
Sbjct: 601 KVIHDCRNDAVNLYQQFGILLRNVFDTQAAHAILQYQENGKQVYKAKYISLNSLC--EQY 658
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
K++++ + R+D +FW RPLT M+ AA DV L I+ + L QQ
Sbjct: 659 NAPCNPIKDQLKQIYRRDQKFWAKRPLTREMMLYAAGDV--LVLIHDQLFGNLAQQ 712
>gi|307172596|gb|EFN63955.1| Exonuclease 3'-5' domain-like-containing protein 1 [Camponotus
floridanus]
Length = 651
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 101/182 (55%), Gaps = 18/182 (9%)
Query: 43 EPSSERQLVIGFDCEGVDLCRHGSLCIMQL-AFPDAIYLVDA------IQGGETVVKACK 95
+P + ++V+ FDCEG++L G L ++Q+ Y+ D +Q G +
Sbjct: 236 KPPPDGKVVVSFDCEGINLGVKGQLTLVQIGTMSGQAYMFDLFTCPRLVQDG-----GLQ 290
Query: 96 PALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV 155
LE ++ KVIHDC+ DS LY QF I L NV DTQ A+++++ QE K P + V
Sbjct: 291 KLLEHPHVIKVIHDCRNDSVNLYNQFTITLMNVFDTQAAHAVLQFQETGK--PVYKVKNV 348
Query: 156 GL--LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLT-ELMVRAAADDVRFLPYIYHNM 212
L L D Y KE+++ + R+D ++W+ RP+T ++++ A++D + +P +Y+ M
Sbjct: 349 NLNTLCD-HYGAPCNPLKEQLKNIYRKDQRYWSRRPMTRDMLIYASSDVLSLVPQVYNAM 407
Query: 213 MK 214
+
Sbjct: 408 SR 409
>gi|307198047|gb|EFN79100.1| Exonuclease 3'-5' domain-like-containing protein 1 [Harpegnathos
saltator]
Length = 831
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 101/177 (57%), Gaps = 8/177 (4%)
Query: 43 EPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKA--CKPALES 100
+P + ++VI FDCEG++L G L ++Q+ V + ++V+A + LE
Sbjct: 412 KPPLDGKVVISFDCEGINLGVKGQLTLVQIGTMSGQAYVFDLFTCPSLVQAGGLQKLLEH 471
Query: 101 SYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL--L 158
+ KVIHDC+ DS LY QF I L NV DTQ A+++++ QE K P + V L L
Sbjct: 472 KNVVKVIHDCRNDSVNLYNQFKIMLTNVFDTQAAHAVLQFQETGK--PVYKVKNVNLNTL 529
Query: 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLT-ELMVRAAADDVRFLPYIYHNMMK 214
D Y KE+++ + R+D ++W+ RP+T ++++ A++D + +P +Y+ M +
Sbjct: 530 CD-HYGAPCNPLKEQLKNIYRKDQRYWSRRPMTRDMLIYASSDVLSLVPQVYNAMSR 585
>gi|440792694|gb|ELR13902.1| sporulation proteinrelated, putative [Acanthamoeba castellanii str.
Neff]
Length = 786
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDA-IYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+ DCEGV+L + GSLC++Q+A +L D Q G + + LE ++ KV
Sbjct: 210 LALDCEGVNLGDKGGSLCLVQIATKSGRCFLFDVEQAGSRLFSEGGLQRVLEDVHVLKVG 269
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
HD + D+ AL+ Q G+ L+++ DTQ+ +S++ ++ P VGL A R
Sbjct: 270 HDLRADAAALFAQHGVFLNHIFDTQVGHSMLT----LRKEPQ-----VGLNAMLRRYANR 320
Query: 168 YQE--KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
Q KE V+ +DP +WT RPL++ M R A DV FL + +M +L ++S++ A
Sbjct: 321 AQNQLKEVVKAEWTRDPLYWTRRPLSDQMTRYAHLDVAFLLKAFDSMAAELERKSIFNNA 380
Query: 226 V 226
+
Sbjct: 381 I 381
>gi|350401760|ref|XP_003486252.1| PREDICTED: hypothetical protein LOC100742773 [Bombus impatiens]
Length = 826
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 97/171 (56%), Gaps = 8/171 (4%)
Query: 49 QLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKA--CKPALESSYITKV 106
++V+ FDCEG++L G L ++Q+ V + +V+A + LE + KV
Sbjct: 411 KIVVSFDCEGINLGVKGQLTLVQIGTMSGQAYVFDLFACPNLVQAGGLQKLLEHKDVIKV 470
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL--LADPRYC 164
IHDC+ DS LY QF I L+NV DTQ A+++++ QE K P + V L L D Y
Sbjct: 471 IHDCRNDSVNLYRQFKIMLNNVFDTQAAHAVLQFQETGK--PVYKVKNVNLNTLCD-HYG 527
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLT-ELMVRAAADDVRFLPYIYHNMMK 214
S KE+++ + R + ++W RPLT ++++ A++D + +P IY +M +
Sbjct: 528 APSNPLKEQLKNIYRNNQRYWCRRPLTRDMLIYASSDVLSLVPQIYVSMSR 578
>gi|221053416|ref|XP_002258082.1| exonuclease [Plasmodium knowlesi strain H]
gi|193807915|emb|CAQ38619.1| exonuclease, putative [Plasmodium knowlesi strain H]
Length = 414
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 27/188 (14%)
Query: 48 RQLVIGFDCEGVDLCRHGSLCIMQLAFPDAI----------------YLVDAIQGGETVV 91
R +I D EG +L ++G +CIMQ+ + Y+ D ++ +V+
Sbjct: 101 RNDIIAVDFEGTNLGKYGKVCIMQVYTEERTPGGVHPKSECLSREKYYIFDLLKM--SVI 158
Query: 92 KACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDY 151
K+ K +E+ K++HDC+ DS ALY Q GIK NV DT A+ L+ E + R+ D Y
Sbjct: 159 KSVKKIIENKKTLKLVHDCREDSSALYNQLGIKFENVYDTSRAHMLLME---KNRNSDIY 215
Query: 152 -ISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF---LPY 207
+SF+ LL D Y GI ++ + ++ + W RPL+++ + A +V++ L
Sbjct: 216 QVSFLQLLND--YLGIKDDCLSSIKKEMYKNEKIWEVRPLSKMSIIYALKNVKYLFPLYR 273
Query: 208 IYHNMMKK 215
I+ NM+ K
Sbjct: 274 IFDNMLSK 281
>gi|68074103|ref|XP_678966.1| exonuclease [Plasmodium berghei strain ANKA]
gi|56499594|emb|CAI04586.1| exonuclease, putative [Plasmodium berghei]
Length = 406
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 16/168 (9%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQL--------AFPDAIYLVDAIQGGETVVKACKPALESSY 102
+I D EG +L R+G +C+MQ+ + Y+ D + ++V+ + K +E+
Sbjct: 104 IIAVDFEGTNLGRYGKICLMQIYTEIEKKDKVFEKYYIFDLL--NKSVINSVKKIIENKK 161
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDY-ISFVGLLADP 161
KVIHDC+ DS ALY Q IK NV DT A+ L+ E +K+ D Y ISF+ LL D
Sbjct: 162 TLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLE---KKKENDIYQISFLNLLHD- 217
Query: 162 RYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
Y G ++ + ++ + W RPL+++ + A +V++L IY
Sbjct: 218 -YLGFKDDCLNNIKKEMYKNERIWEIRPLSKISIIYALKNVKYLLPIY 264
>gi|70950310|ref|XP_744489.1| exonuclease [Plasmodium chabaudi chabaudi]
gi|56524464|emb|CAH74590.1| exonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 406
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 91/168 (54%), Gaps = 16/168 (9%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQL--------AFPDAIYLVDAIQGGETVVKACKPALESSY 102
+I D EG +L R+G +C+MQ+ + Y+ D + ++V+ + K +E+
Sbjct: 104 IIAVDFEGTNLGRYGKVCLMQIYTEIEKKDKVFEKYYIFDLL--NKSVINSVKKIIENKK 161
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDY-ISFVGLLADP 161
KVIHDC+ DS ALY Q IK NV DT A+ L+ E +K+ D Y +SF+ LL D
Sbjct: 162 TLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLLLE---KKKENDIYQVSFLNLLHD- 217
Query: 162 RYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
Y G+ ++ + ++ + W RPL+++ + A +V++L IY
Sbjct: 218 -YLGVKDDCLNNIKKEMYKNDKIWEIRPLSKISIIYALKNVKYLLPIY 264
>gi|124512300|ref|XP_001349283.1| exonuclease, putative [Plasmodium falciparum 3D7]
gi|23499052|emb|CAD51132.1| exonuclease, putative [Plasmodium falciparum 3D7]
Length = 406
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 95/176 (53%), Gaps = 20/176 (11%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAF--------PDAI----YLVDAIQGGETVVKAC 94
R +I D EG +L R+G +C+MQ+ D I Y+ D ++ +V+K+
Sbjct: 96 NRSEIIAIDFEGTNLGRYGKVCLMQVYVEKKNMNEQSDNILQKYYIFDLLKT--SVIKSA 153
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDY-IS 153
+ +E+ K+IHDC+ DS ALY Q G+KL NV DT A+ L+ E++ + D Y +S
Sbjct: 154 QKIIENKKTLKLIHDCREDSSALYNQLGMKLENVYDTSRAHLLLMEKQ---KKNDIYQVS 210
Query: 154 FVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
F L+ D Y GI+ ++ + ++ + W RPL+ + + A +V++L +Y
Sbjct: 211 FAQLIND--YLGINDASLSFIKKEMYKNEKIWETRPLSNISIIYALKNVKYLYKLY 264
>gi|156097777|ref|XP_001614921.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
Sal-1]
gi|148803795|gb|EDL45194.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
Length = 414
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 27/185 (14%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDAI----------------YLVDAIQGGETVVKAC 94
+I D EG +L ++G +CIMQ+ + Y+ D ++ +V+K+
Sbjct: 104 IIAVDFEGTNLGKYGKVCIMQVYTEERTREGTPPQSECISREKYYIFDLLKM--SVIKSV 161
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDY-IS 153
K +E+ K++HDC+ DS ALY Q GIK NV DT A+ L+ E + +S D Y +S
Sbjct: 162 KKIIENKKTLKLVHDCREDSSALYNQLGIKFENVYDTSRAHMLLME---KNKSNDIYQVS 218
Query: 154 FVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF---LPYIYH 210
F+ LL D Y GI + ++ + ++ + W RPL+++ + A +V++ L I+
Sbjct: 219 FLQLLND--YLGIKDECLSSIKKEMYKNEKIWQVRPLSKMSIIYALKNVKYLFPLYRIFD 276
Query: 211 NMMKK 215
NM+ K
Sbjct: 277 NMLPK 281
>gi|157129284|ref|XP_001655349.1| hypothetical protein AaeL_AAEL002475 [Aedes aegypti]
gi|108882084|gb|EAT46309.1| AAEL002475-PA [Aedes aegypti]
Length = 939
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 7/184 (3%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYIT 104
E Q V+ FDCEG++L G + ++QL + + +V K LES +
Sbjct: 476 EDQAVVSFDCEGINLGVRGQITMIQLGTTRGEAFIFDVASCPDMVPHGGIKEVLESEKVI 535
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ-EGRKRSPDDYISFVGLLADPRY 163
KVIHDC+ DS L+ QF I L NV DTQ A+++++ Q +G++ +S L Y
Sbjct: 536 KVIHDCRNDSVNLFNQFQILLKNVFDTQSAHAVLQFQDQGKQVYKVKNVSLNTLCE--MY 593
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL--PYIYHNMMKKLNQQSL 221
K++++ + R+D ++W RPLT M+ AA DV L +Y NM + +
Sbjct: 594 NATVNPMKDQLKNVYRRDQKYWARRPLTRDMLLYAAGDVLILINEQLYLNMATSIKAEFR 653
Query: 222 WYLA 225
LA
Sbjct: 654 ELLA 657
>gi|390359569|ref|XP_003729510.1| PREDICTED: uncharacterized protein LOC100893986 [Strongylocentrotus
purpuratus]
Length = 458
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVVKAC-KPALESSYITKVI 107
LV+ DCEG L + G L ++Q+A + +YL D + LES + KVI
Sbjct: 267 LVVALDCEGCSLSKTGRLTLVQIATMEGKVYLFDVYRCPYLFHDGLLADFLESEAVLKVI 326
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ---EGRKRSPDDYISFVGLLADPRYC 164
HDC++D+ ALY QFGI L N+ DT IAY +++ Q G K P ISF L C
Sbjct: 327 HDCRKDTAALYHQFGITLTNIFDTSIAYVVLQNQCQVAGTKPRPR--ISFQNL------C 378
Query: 165 GISYQE-----KEEVRVLLRQDPQFWTYRPLTELMVRAAADDV-RFLPYIYH 210
+ +E K+ ++ + P FW RPL M+ AA DV LP +Y
Sbjct: 379 EMIGEEMDFTIKKSIKKKMVYIPNFWATRPLKTNMINYAAADVYMLLPNVYQ 430
>gi|405975308|gb|EKC39882.1| Exonuclease 3'-5' domain-containing protein 1 [Crassostrea gigas]
Length = 403
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 83/161 (51%), Gaps = 5/161 (3%)
Query: 48 RQLVIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVVKA-CKPALESSYITK 105
R+ V+ DCEG+ L G + ++Q+ +YL D + E + K LES+ I K
Sbjct: 31 RESVLAVDCEGIALGVEGPMTLLQICTNSGDVYLFDVQENRELFSEGHLKIVLESNEILK 90
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
VIH C DS ALY QFG+ L NV DTQ+A +++EE GR + GL
Sbjct: 91 VIHACPYDSAALYHQFGVTLQNVFDTQVADTVLEEHNGRLLVSS--LDLQGLCQKYSSSK 148
Query: 166 ISYQEKEEVRVLL-RQDPQFWTYRPLTELMVRAAADDVRFL 205
KE++++ ++D +FW R LT+ M A DVR L
Sbjct: 149 KVSDYKEQLKIQYSKKDGEFWAKRSLTDEMKSVAEGDVRAL 189
>gi|403372337|gb|EJY86064.1| 3'-5' exonuclease, putative [Oxytricha trifallax]
Length = 615
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 43 EPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV-KACKPALESS 101
E ++ +LVIG DCEG + R +L ++Q+ + +L D + TV K K LE +
Sbjct: 70 ERGADVELVIGVDCEG--MSRQKNLALIQVGVANKCFLFDMTKL--TVFPKVLKQILEDA 125
Query: 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL-LAD 160
I KV HD D+ AL QF + V DTQIA+ L+ RK S D +GL +
Sbjct: 126 NIVKVFHDFCEDTSALVRQFQVHCDRVFDTQIAHRLL-----RKYSDDPKDQNLGLNMLL 180
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
Y + +KE + ++ DP+ W RPL+ M A+ DV +LP +Y M
Sbjct: 181 KHYLNVENNQKESMVNQMKSDPELWWKRPLSYEMQEYASQDVLYLPRVYEAM 232
>gi|115896423|ref|XP_795972.2| PREDICTED: uncharacterized protein LOC591312 [Strongylocentrotus
purpuratus]
Length = 976
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 11/183 (6%)
Query: 42 LEPSSERQLVIGFDCEGVDLCRH-GSLCIMQLAFPDA-IYLVDAIQGGETVV--KACKPA 97
L+ +VIG DCEGV+L R G L ++Q++ D +L DA + + + + K
Sbjct: 725 LDKCRRETVVIGLDCEGVELGREKGRLTLVQISTWDGKAFLFDAFKNPQLLKGNSSLKKT 784
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPD-DYISFVG 156
LE I KVIH C D+ +LY FG+KL NV DT IA I EQ R Y +
Sbjct: 785 LEHDSILKVIHACNSDTYSLYHDFGVKLKNVFDTSIAMFTIMEQLNRNHPYQIGYKALCE 844
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMV-RAAADDVRFLPYIYHNMMKK 215
LL + + + ++ + + + FW RPLTE M+ AA+D + +P +Y +
Sbjct: 845 LLGEA-----ASHKDDDFKKKMIETEDFWKIRPLTEEMIYYAASDTLCLVPTVYLKLNGM 899
Query: 216 LNQ 218
L +
Sbjct: 900 LTR 902
>gi|405970018|gb|EKC34956.1| Exonuclease 3'-5' domain-containing protein 1 [Crassostrea gigas]
Length = 210
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 9/174 (5%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQL-AFPDAIYLVDAIQGGETVVKA-CKPALESSYITKVIH 108
V+ DCEG+ L G + ++Q+ + +YL D + E + K LES I KVIH
Sbjct: 27 VLAVDCEGIALGVEGPMTLLQICTYSGDVYLFDVQENRELFSEGHLKIVLESDEILKVIH 86
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKR-SPDDYISFVGLLADPRYCGIS 167
C DS ALY QFG+ L NV DTQ+A +++EE R S D + +
Sbjct: 87 ACSYDSAALYHQFGVTLQNVFDTQVADTVLEEHNERLLVSSLDLQELCQKYSSSKKVS-D 145
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR-FLPYIYHNMMKKLNQQS 220
Y+E+ + +++ +FW RPLT+ M A DVR +P ++ K+L++Q+
Sbjct: 146 YKEQLKYS---KKEGEFWAKRPLTDEMKSVAVGDVRALIPEVFET-QKRLSEQA 195
>gi|330843627|ref|XP_003293751.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum]
gi|325075888|gb|EGC29725.1| hypothetical protein DICPUDRAFT_42473 [Dictyostelium purpureum]
Length = 368
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 111/213 (52%), Gaps = 18/213 (8%)
Query: 17 PDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPD 76
P+ D+V +++ + +++ + E+Q IG D E V++ + G + ++Q++ P
Sbjct: 136 PEQTSFDNV---YMIDDIAKIQFAINQIKKEKQ--IGLDIEAVEMGKRGEMSLIQISTPS 190
Query: 77 --AIYLVDAIQGGETVVK-ACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
++YL D + G+ + K K LES I KV+HDC+RDSE LY ++ + L +V D QI
Sbjct: 191 NASVYLFDVLTLGDIIFKLGLKEVLESKVILKVVHDCRRDSEILYHKYQVLLTHVYDIQI 250
Query: 134 AYSLIEEQ-EG----RKRSPDDYISFVGLLADPRYC-GISYQEKEEVRVLLRQDPQFWTY 187
A+++I ++ +G R+ ++ +YC I ++ K+ L +D + W
Sbjct: 251 AHAIILKKIDGNLPIRRFGFNELTHIYTSKEYSKYCVDIKFKTKQ----LFDEDNKIWAK 306
Query: 188 RPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
RP+ +L++ A D L IY + KL S
Sbjct: 307 RPIPKLLLDYACLDAAILLPIYRTITPKLQSGS 339
>gi|66811680|ref|XP_640019.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
discoideum AX4]
gi|60468043|gb|EAL66053.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
discoideum AX4]
Length = 390
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 11/173 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVV---KACKPALESSY 102
+++ +IG D E +++ + G + ++Q++ P+ IYL D I+ G V K LES
Sbjct: 182 KKEKLIGLDIEAIEMGKKGDISLVQISTPNGRIYLFDIIKMGANVTPFKYGLKEVLESVK 241
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ-EGR---KRSPDDYISFVGLL 158
I KV+HDC+RDSE L+ ++ + L +V D QIA++L++++ +G +R + + L
Sbjct: 242 ILKVVHDCRRDSEILFHRYQVALAHVYDVQIAHALVQKKIQGNIPIRRY--GFNELIDLY 299
Query: 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPL-TELMVRAAADDVRFLPYIYH 210
+Y I K +V+ P+ W RPL + + A+ D LP YH
Sbjct: 300 TSRKYSEICIDIKFKVKQQFENQPEVWAKRPLPKDFIDYASLDAACLLPIYYH 352
>gi|403345654|gb|EJY72204.1| 3'-5' exonuclease domain-containing protein [Oxytricha trifallax]
Length = 747
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 9/169 (5%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
++G DCEG+ R L ++Q+ F YL D ++ +ES I K+ HD
Sbjct: 69 ILGVDCEGLSKGR--PLSLLQMYFAGKCYLFDLLKLNP-FNHGLLEVMESKTIIKIFHDF 125
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEE----QEGRKRSPDDYISFVGLLADPRYCGI 166
D AL Q+ + + V DTQIA+ +I++ + D+ IS LL Y +
Sbjct: 126 CEDQSALINQYNMTCYYVFDTQIAHRVIQQAICKTSKLQNFKDNNISLANLLK--TYIDV 183
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
+ +K E+ +R D FW RPLT+ M+ A DV +LP +Y + K+
Sbjct: 184 VHTKKHEISAKMRNDDMFWEKRPLTQDMIDYATQDVCYLPMVYQKLQKE 232
>gi|301754868|ref|XP_002913303.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
[Ailuropoda melanoleuca]
Length = 596
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG +CRHG LC +Q+A +YL D + G K LE I K
Sbjct: 180 KKQTVLSVAAEGAHVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLKMVLEDKRILK 239
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ S L
Sbjct: 240 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGFLPNCISSLQESLIRHLKVA 299
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
P+Y EE + L++++P+ W RPL+ +++ A + +L
Sbjct: 300 PKYLSFL----EERQKLIQENPEVWFTRPLSPSLLKILALEATYL 340
>gi|281338215|gb|EFB13799.1| hypothetical protein PANDA_001056 [Ailuropoda melanoleuca]
Length = 500
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG +CRHG LC +Q+A +YL D + G K LE I K
Sbjct: 85 KKQTVLSVAAEGAHVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLKMVLEDKRILK 144
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ S L
Sbjct: 145 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGFLPNCISSLQESLIRHLKVA 204
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
P+Y EE + L++++P+ W RPL+ +++ A + +L
Sbjct: 205 PKYLSFL----EERQKLIQENPEVWFTRPLSPSLLKILALEATYL 245
>gi|440795369|gb|ELR16493.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 419
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 31/207 (14%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDA-IYLVDAIQGGETVVK--ACKPALESSYITKVI 107
+ DCEGVDL + GSLC++Q+A +L D +GG + + L+ ++ KV
Sbjct: 228 LALDCEGVDLGDKSGSLCLVQIAMRSGQCFLFDVTKGGSQLFSEGGLRRVLKDVHVLKVG 287
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR---YC 164
HD + D+ AL+ + + L++V DTQ+ + Q VGL +P Y
Sbjct: 288 HDLRADASALFAEHSVLLNHVFDTQVLTVGKQNQ-------------VGL--NPMLKLYA 332
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYL 224
+ K+ V+ +D +WT RPLTE MV A+ DV FL + +M L QQ L+
Sbjct: 333 NSQNELKKAVKKAWTRDRLYWTRRPLTEEMVGYASLDVAFLLQAFDSMAAALEQQCLFDH 392
Query: 225 AVRGA-LYCRCFCINENDYVDWPPLPP 250
A G+ LY D +P PP
Sbjct: 393 AAAGSRLYI--------DRRRFPTAPP 411
>gi|74000167|ref|XP_535437.2| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Canis
lupus familiaris]
Length = 569
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 152 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILK 211
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ S L
Sbjct: 212 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGFLPNCISSLKESLIRHLKMA 271
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
P+Y EE + L++++P+ W RPL+ +++ A + +
Sbjct: 272 PKYLSFL----EERQKLIQENPEVWFTRPLSPSLLKILALEATY 311
>gi|410961631|ref|XP_003987383.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Felis
catus]
Length = 623
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 213 KKQSVLSVATEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILK 272
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ S L
Sbjct: 273 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGFLPNCISSLQESLIRHLKVA 332
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y EE + L++++P+ W RPL+ +++ A
Sbjct: 333 PKYLSFL----EERQKLIQENPEVWFTRPLSPSLLKILA 367
>gi|194206775|ref|XP_001503529.2| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Equus
caballus]
Length = 562
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 146 KKQSVLSVAAEGTNVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILK 205
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A +E P+ + L
Sbjct: 206 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVFQFSRETGGFLPNCISTLQESLIRHLKIA 265
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ E+ + R+ R++P+ W RPL+ +++ A
Sbjct: 266 PKY--LSFLEERQKRI--RENPEVWFTRPLSPSLLKILA 300
>gi|350596651|ref|XP_003361459.2| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like,
partial [Sus scrofa]
Length = 328
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVD-AIQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 130 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDILLLGSRAFNNGLQMVLEDKRILK 189
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 190 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKIA 249
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ E+ + R+ +++P+ W RPL+ +++ A
Sbjct: 250 PKY--LSFLEERQKRI--QENPELWFTRPLSPSLLKILA 284
>gi|350578796|ref|XP_003121634.3| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Sus
scrofa]
Length = 536
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVD-AIQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 123 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDILLLGSRAFNNGLQMVLEDKRILK 182
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD----- 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 183 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKIA 242
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ E+ + R+ +++P+ W RPL+ +++ A
Sbjct: 243 PKY--LSFLEERQKRI--QENPELWFTRPLSPSLLKILA 277
>gi|344294180|ref|XP_003418797.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
[Loxodonta africana]
Length = 592
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 182 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILK 241
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 242 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVA 301
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EE + L +++P+ W RPL+ +++ A
Sbjct: 302 PKY--VSFL--EERQKLTQENPEVWFTRPLSPTLLKILA 336
>gi|431896107|gb|ELK05525.1| Exonuclease 3'-5' domain-containing protein 1 [Pteropus alecto]
Length = 423
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 80/159 (50%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 152 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILK 211
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 212 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVA 271
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y EE + L++++P+ W RPL+ +++ A
Sbjct: 272 PKYLFFL----EERQKLIQENPEVWFTRPLSPSLLKILA 306
>gi|405978809|gb|EKC43171.1| Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A
alpha isoform [Crassostrea gigas]
Length = 1039
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQL-AFPDAIYLVDAIQGGETVVKA-CKPALESSYIT 104
+R+ +I EGV L R G L + + F +Y D + E K + LE++ +
Sbjct: 616 QRECIISVAGEGVALGREGPLTLFLVGTFYGKVYAFDCLVNNELFDKGGLRLLLENTKVL 675
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
KV C S ALY QF ++L NV DTQIA+ +I E EG+K + ++ +
Sbjct: 676 KVAFSCCFLSAALYTQFAVRLRNVFDTQIAHLVIRELEGQKLP--ERLTLFDICQCYSGS 733
Query: 165 GISYQEKEEVR-VLLRQDPQFWTYRPLTELMVRAAADDV-RFLPYIYHNMMKKLNQQSL 221
G +Y + +V+ + LR+ +W+ RPLT M+ AADDV F+P +Y + L + L
Sbjct: 734 GNNYGWRTDVKDMYLRRIGDYWSQRPLTCEMLEFAADDVMSFIPEVYRRQSEFLEEHRL 792
>gi|294950345|ref|XP_002786583.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239900875|gb|EER18379.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 387
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 4/169 (2%)
Query: 48 RQLVIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVVKACKPALESSYITKV 106
++ VIG DCEGV L R G LC +Q+A ++ DA + G VV++ P L + KV
Sbjct: 38 KEGVIGVDCEGVMLGRFGQLCTIQIATERGDAFMFDACRPG--VVQSLAPLLSDPSVLKV 95
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGI 166
HDC+ DS ALY Q GI L V DTQ A L+ + + + + V +
Sbjct: 96 FHDCREDSSALYHQHGISLDCVFDTQ-ATMLVGNRMDHQTGYWELVRQVLFDGEKEVSHE 154
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
+ + + + +DP+ W RPL + +V A L +YH + +
Sbjct: 155 VLGDDPQFKTQMAEDPELWRRRPLPQHVVDYALSGCLHLIPLYHAIQSR 203
>gi|148696007|gb|EDL27954.1| Vexonuclease 3'-5' domain-like 1 [Mus musculus]
gi|187957716|gb|AAI50663.1| Exonuclease 3'-5' domain-like 1 [Mus musculus]
gi|219519197|gb|AAI44751.1| Exdl1 protein [Mus musculus]
Length = 570
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 153 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILK 212
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 213 VIHDCRWLSDCLSHQYGIMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVA 272
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
PRY + + E+ + R+ +++P+ W RPL +++ A + +
Sbjct: 273 PRY--LFFLEERQKRI--QENPEIWLTRPLPPSLLKILALETTY 312
>gi|27370298|ref|NP_766445.1| exonuclease 3'-5' domain-containing protein 1 [Mus musculus]
gi|81914299|sp|Q8CDF7.1|EXD1_MOUSE RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
AltName: Full=Exonuclease 3'-5' domain-like-containing
protein 1
gi|26326111|dbj|BAC26799.1| unnamed protein product [Mus musculus]
gi|111598629|gb|AAH92241.1| Exonuclease 3'-5' domain-like 1 [Mus musculus]
Length = 570
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 153 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILK 212
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 213 VIHDCRWLSDCLSHQYGIMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVA 272
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
PRY + + E+ + R+ +++P+ W RPL +++ A + +
Sbjct: 273 PRY--LFFLEERQKRI--QENPEIWLTRPLPPSLLKILALETTY 312
>gi|297696371|ref|XP_002825370.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1
[Pongo abelii]
Length = 572
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFNNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 214 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVA 273
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
P+Y +S+ EK + L++++P+ W RP++ +++ A + +
Sbjct: 274 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILALEATY 313
>gi|328872117|gb|EGG20484.1| 3'-5' exonuclease domain-containing protein [Dictyostelium
fasciculatum]
Length = 347
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 100/200 (50%), Gaps = 14/200 (7%)
Query: 19 GKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDA- 77
G+ S I ++ + QL F + E V+ FD EG ++ ++G + ++Q+ +
Sbjct: 115 GENESSFDGIFLINDVQQLKRVFEIINKEH--VVAFDLEGWEMGKNGEVSLVQIGLKNGR 172
Query: 78 IYLVDAIQGGETVVK-ACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYS 136
+++ D + G K K LES I K++HDC+RDSE LY ++ + L +V D QIA++
Sbjct: 173 VFIFDIMVLGHNAFKHGLKDLLESKIILKIVHDCRRDSEILYHRYQVTLDHVYDIQIAHA 232
Query: 137 LIEEQEGRKRSPDDYISFVGL-----LADPR-YCGISYQEKEEVRVLLRQDPQFWTYRPL 190
L++ +K+ + I GL L P+ Y + K + R L + + W RPL
Sbjct: 233 LLQ----KKKEGNVPIRRFGLAELTDLYAPKPYAQQAINVKHKGRDLFKNNLDIWRQRPL 288
Query: 191 TELMVRAAADDVRFLPYIYH 210
++ A DV L IY+
Sbjct: 289 PPTIIDYCALDVIVLLPIYN 308
>gi|432937200|ref|XP_004082385.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
[Oryzias latipes]
Length = 494
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 76/148 (51%), Gaps = 8/148 (5%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ-GGETVVKACKPALESSYITK 105
++Q VIG + EGVD R+G LC +Q+A +YL D + G + LES +I K
Sbjct: 133 KKQSVIGVNAEGVDKSRNGRLCWLQIATTQKVYLFDILLLGTQAFRNGLSFILESKHILK 192
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF---VGL-LADP 161
VIHDC+ + +L QFG+KL NV DTQ+A + E PD S V L L P
Sbjct: 193 VIHDCRVIAGSLMAQFGVKLMNVFDTQVADVMCFHSETGGFLPDRISSLQEVVSLHLKVP 252
Query: 162 RYCGISYQEKEEVRVLLRQDPQFWTYRP 189
+ Q K + L ++D + W RP
Sbjct: 253 SSRLSALQMKSQ---LTKKDMEVWYERP 277
>gi|297296193|ref|XP_002804776.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2
[Macaca mulatta]
Length = 572
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFNNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 214 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVA 273
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
P+Y +S+ EK + L++++P+ W RP++ +++ A + +
Sbjct: 274 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILALEATY 313
>gi|221044296|dbj|BAH13825.1| unnamed protein product [Homo sapiens]
Length = 572
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 214 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 273
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 274 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 308
>gi|426378717|ref|XP_004056059.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1
[Gorilla gorilla gorilla]
Length = 572
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 214 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 273
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 274 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 308
>gi|397512653|ref|XP_003826655.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2
[Pan paniscus]
Length = 572
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 214 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 273
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 274 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 308
>gi|296214138|ref|XP_002753640.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1
[Callithrix jacchus]
Length = 572
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EGV++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQSVLSVAAEGVNVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFNNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD----- 160
+IHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 214 IIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKIA 273
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y EE + L++++P+ W RP++ +++ A
Sbjct: 274 PKYLFFL----EEKQKLIQENPEVWFIRPVSPSLLKILA 308
>gi|114656432|ref|XP_523055.2| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2
[Pan troglodytes]
Length = 572
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 214 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 273
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 274 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 308
>gi|70949124|ref|XP_744002.1| 3'-5' exonuclease [Plasmodium chabaudi chabaudi]
gi|56523765|emb|CAH76355.1| 3'-5' exonuclease, putative [Plasmodium chabaudi chabaudi]
Length = 383
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + VK K E+ I
Sbjct: 67 NENLKIIGLDIEGYKIGRNGTVSIIQVCAKD-IYIFDLYKCDNSYLFVKYLKELFENKNI 125
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 126 IKVAHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 182
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLP 206
++ K ++ D + + RP+++ ++ A DV +L
Sbjct: 183 --LNNNHKIYFHKIISLDNKIYLKRPISKELIHYAVQDVLYLK 223
>gi|395746579|ref|XP_003778478.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2
[Pongo abelii]
Length = 514
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFNNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
P+Y +S+ EK + L++++P+ W RP++ +++ A + +
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILALEATY 255
>gi|123983340|gb|ABM83411.1| exonuclease 3'-5' domain-like 1 [synthetic construct]
gi|123998041|gb|ABM86622.1| exonuclease 3'-5' domain-like 1 [synthetic construct]
Length = 475
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 57 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 116
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 117 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 176
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 177 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 211
>gi|157874025|ref|XP_001685508.1| hypothetical protein LMJF_32_1880 [Leishmania major strain
Friedlin]
gi|68128580|emb|CAJ08712.1| hypothetical protein LMJF_32_1880 [Leishmania major strain
Friedlin]
Length = 753
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP---ALESSYITKV 106
L I D EG L R GS+CI+ LA +Y++D + G + A P LES I K+
Sbjct: 547 LTIALDLEGRSLGRMGSICIITLATYSTVYIIDVVMLGAEALYAGSPLKRVLESRDIMKL 606
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDTQIA--YSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
+ DC+ D +AL+F +G++L NV D QI+ ++L ++ +GL D
Sbjct: 607 MFDCRADCDALFFLYGVRLQNVCDLQISSCFALFPTSPHLPGMKSVFL-VLGLFTD-EDA 664
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
GI + +W RPLT+++V+ A DV++
Sbjct: 665 GIKNAGRHLFNPRCGGSFDWWEERPLTDVLVQYCAVDVKYF 705
>gi|109080718|ref|XP_001099755.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1
[Macaca mulatta]
Length = 514
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFNNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
P+Y +S+ EK + L++++P+ W RP++ +++ A + +
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILALEATY 255
>gi|355692623|gb|EHH27226.1| Exonuclease 3'-5' domain-like-containing protein 1 [Macaca mulatta]
Length = 514
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFNNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFTRPVSPSLLKILA 250
>gi|426378719|ref|XP_004056060.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 2
[Gorilla gorilla gorilla]
Length = 514
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 250
>gi|82753293|ref|XP_727619.1| 3'-5' exonuclease [Plasmodium yoelii yoelii 17XNL]
gi|23483550|gb|EAA19184.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii]
Length = 410
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 92/173 (53%), Gaps = 8/173 (4%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 67 NENLKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 125
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 126 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 182
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ K ++ D + + RP+++ ++ A DV +L + N+++ L
Sbjct: 183 --LNNNHKIYFHKIISLDNKIYLKRPISKELIHYAVQDVLYLKPLMLNLVETL 233
>gi|332235202|ref|XP_003266794.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Nomascus
leucogenys]
Length = 514
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANMCRHGKLCWLQVATNCRVYLFDIFLLGSGAFNNGLQMILEDKKILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
P+Y +S+ EK + L++++P+ W RP++ +++ A + +
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILALEATY 255
>gi|355777956|gb|EHH62992.1| Exonuclease 3'-5' domain-like-containing protein 1 [Macaca
fascicularis]
Length = 514
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFNNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLKVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 250
>gi|119612879|gb|EAW92473.1| exonuclease 3'-5' domain-like 1 [Homo sapiens]
Length = 514
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 250
>gi|34303939|ref|NP_689809.2| exonuclease 3'-5' domain-containing protein 1 [Homo sapiens]
gi|317373564|sp|Q8NHP7.4|EXD1_HUMAN RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
AltName: Full=Exonuclease 3'-5' domain-like-containing
protein 1
gi|34192161|gb|AAH30628.2| Exonuclease 3'-5' domain containing 1 [Homo sapiens]
Length = 514
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 250
>gi|158258485|dbj|BAF85213.1| unnamed protein product [Homo sapiens]
Length = 514
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 250
>gi|114656434|ref|XP_001147941.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1
[Pan troglodytes]
Length = 514
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 250
>gi|397512651|ref|XP_003826654.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 isoform 1
[Pan paniscus]
Length = 514
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 96 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILK 155
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 156 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVA 215
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
P+Y +S+ EK + L++++P+ W RP++ +++ A
Sbjct: 216 PKY--LSFLEKRQ--KLIQENPEVWFIRPVSPSLLKILA 250
>gi|440898979|gb|ELR50362.1| Exonuclease 3'-5' domain-containing protein 1 [Bos grunniens mutus]
Length = 578
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 161 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILK 220
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 221 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSVETGGFLPNCISTLQESLIRHLKIA 280
Query: 166 ISYQEKEEVR-VLLRQDPQFWTYRPLTELMVRAAA 199
+ EVR +R++P+ W RPL+ +++ A
Sbjct: 281 PKHLSFLEVRQKWIRENPELWFTRPLSPSLLKILA 315
>gi|297479522|ref|XP_002690868.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Bos
taurus]
gi|296483301|tpg|DAA25416.1| TPA: hypothetical protein BOS_10707 [Bos taurus]
Length = 662
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 245 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILK 304
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 305 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSVETGGFLPNCISTLQESLIRHLKIA 364
Query: 166 ISYQEKEEVR-VLLRQDPQFWTYRPLTELMVRAAA 199
+ EVR +R++P+ W RPL+ +++ A
Sbjct: 365 PKHLSFLEVRQKWIRENPELWFTRPLSPSLLKILA 399
>gi|322788034|gb|EFZ13875.1| hypothetical protein SINV_15885 [Solenopsis invicta]
Length = 880
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 45/214 (21%)
Query: 43 EPSSERQLVIGFDCEGVDLCRHGSLCIMQL-AFPDAIYLVDA------IQGG-------- 87
+P + +++I FDCEG++L G L ++Q+ Y+ D IQ G
Sbjct: 408 KPPPDGKVIISFDCEGINLGVKGQLTLVQIGTMSGQAYVFDLVTCPNLIQAGGLQKLLEH 467
Query: 88 -------------------ETVVKACKPALESSYIT-----KVIHDCKRDSEALYFQFGI 123
++ + + A S+Y+ +VIHDC+ DS LY QF I
Sbjct: 468 PHVIKVKMFYIVYNKQKYIRYIIISQRYANTSTYVKSCLFLQVIHDCRNDSVNLYNQFKI 527
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL--LADPRYCGISYQEKEEVRVLLRQD 181
L NV DTQ A+++++ QE K P + V L L D Y KE+++ + R+D
Sbjct: 528 TLTNVFDTQAAHAVLQFQETGK--PVYKVKNVNLNTLCD-HYGAPCNPLKEQLKNIYRKD 584
Query: 182 PQFWTYRPLT-ELMVRAAADDVRFLPYIYHNMMK 214
++W+ RP+T ++++ A++D + +P +Y+ M +
Sbjct: 585 QRYWSRRPMTRDMLIYASSDVLSLVPQVYNAMSR 618
>gi|440794844|gb|ELR15989.1| R3H domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 441
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 12/154 (7%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIY-LVDAIQGGETVVK--ACKPALESSYITKVI 107
+ DCEGVDL + GSLC++Q+A Y L D +GG + LE ++ KV
Sbjct: 15 LALDCEGVDLGDKSGSLCLVQIATRSGRYFLFDVTKGGSRHFSEGGLRRVLEDVHVLKVG 74
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
HD + D+ AL+ + G+ L++V DTQ+ +S++ + + + + Y
Sbjct: 75 HDLRADASALFAEHGVLLNHVFDTQVGHSVLTVGKQNQVGLNPMLKL--------YANSQ 126
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADD 201
+ K+ V+ +D +WT RPLTE MV A+ D
Sbjct: 127 NELKKAVKKAWTRDRLYWTRRPLTEEMVGYASLD 160
>gi|358411916|ref|XP_003582162.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like [Bos
taurus]
Length = 506
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 89 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILK 148
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 149 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSVETGGFLPNCISTLQESLIRHLKIA 208
Query: 166 ISYQEKEEVR-VLLRQDPQFWTYRPLTELMVRAAA 199
+ EVR +R++P+ W RPL+ +++ A
Sbjct: 209 PKHLSFLEVRQKWIRENPELWFTRPLSPSLLKILA 243
>gi|291403202|ref|XP_002717830.1| PREDICTED: exonuclease 3'-5' domain containing 1 [Oryctolagus
cuniculus]
Length = 558
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 2/155 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQSVLSVAVEGANVCRHGKLCWLQVASNSRVYLFDIFLLGRRAFNNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-GLLADPRYC 164
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L+ +
Sbjct: 214 VIHDCRWLSDCLSHQYGIMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVA 273
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
EE + L++++P W RPL+ +++ A
Sbjct: 274 PKHLSFLEERQKLIQENPDVWFTRPLSPSLLKILA 308
>gi|395503433|ref|XP_003756070.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1
[Sarcophilus harrisii]
Length = 536
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 2 ASSPSHQTH-IPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVD 60
++S S ++H I L +D P + + V N Q ++Q V+ EGV+
Sbjct: 107 SASSSFESHTITLLNDLKYSPSEEEDVTYTVVNQFQQKFGSAMLHIKKQSVLSVAAEGVN 166
Query: 61 LCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITKVIHDCKRDSEALYF 119
LCRHG LC +Q+A +YL D + G + LE I KVIHDC+ S+ L
Sbjct: 167 LCRHGKLCWLQVATSSRVYLFDIFLLGSRAFNNGLQMVLEDRKILKVIHDCRWLSDCLSH 226
Query: 120 QFGIKLHNVVDTQIA 134
Q+GI L NV DTQ+A
Sbjct: 227 QYGIVLSNVFDTQVA 241
>gi|348579969|ref|XP_003475751.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Cavia
porcellus]
Length = 571
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 6/163 (3%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + E I K
Sbjct: 154 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMIFEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
VIHDC+ S+ L+ Q+GI L+NV DTQ+A E P+ + L R+
Sbjct: 214 VIHDCRWLSDCLFHQYGIMLNNVFDTQVADVFQFSIETGGFLPNCISTLQESLI--RHLN 271
Query: 166 ISYQE---KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
++ + E+ + L++++P+ W RPL +++ A +L
Sbjct: 272 VAPKHLSFLEDRQKLIQENPEVWFTRPLPPSLLKILALQATYL 314
>gi|308270300|emb|CBX26912.1| hypothetical protein N47_A09410 [uncultured Desulfobacterium sp.]
Length = 382
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 26/193 (13%)
Query: 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH--GSLCIMQLAFPDAIYLVDAI 84
P+ I+ S L + E++ IGFD E D H +C++Q+A + I+++D I
Sbjct: 8 PVTIIETLSGLKDALVNIKEEKK--IGFDLEA-DSMHHFPEKVCLLQVATKNCIFVIDTI 64
Query: 85 QGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
+ E + KP + ITK+ H D +L+ F I+++N+ D+++A + +E
Sbjct: 65 KLKE--LSLLKPIFADNEITKIFHGADYDVRSLFRDFNIEINNLFDSELASRFLGVKE-- 120
Query: 145 KRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
GL A R+ Y EK+ ++D W+ RPL + M+ AADDVR+
Sbjct: 121 ----------TGLEAVIRHRFNVYLEKK----FTKRD---WSKRPLIDDMLHYAADDVRY 163
Query: 205 LPYIYHNMMKKLN 217
L +Y + K+LN
Sbjct: 164 LVPLYEILEKELN 176
>gi|426234083|ref|XP_004011034.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Ovis
aries]
Length = 785
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 368 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMVLEDKRILK 427
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 428 VIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSVETGGFLPNCISTLQESLIRHLKIA 487
Query: 166 ISYQEKEEVR-VLLRQDPQFWTYRPLTELMVRAAA 199
+ EVR ++++P+ W RPL+ +++ A
Sbjct: 488 PKHLSFLEVRQKWIQKNPELWFTRPLSPSLLKILA 522
>gi|157820709|ref|NP_001101231.1| exonuclease 3'-5' domain-containing protein 1 [Rattus norvegicus]
gi|149023013|gb|EDL79907.1| exonuclease 3'-5' domain-like 1 (predicted) [Rattus norvegicus]
Length = 562
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 153 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILK 212
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLL-----AD 160
VIHDC+ S+ L Q+GI L NV DTQ+A L E P+ + L
Sbjct: 213 VIHDCRWLSDCLSHQYGIMLSNVFDTQVADVLQFSMETGGFLPNCISTLQECLIRHLKVA 272
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPL 190
P+Y EE + ++++P+ W RPL
Sbjct: 273 PKYLLF----LEERQKQIQENPEVWLTRPL 298
>gi|221053221|ref|XP_002257985.1| 3'-5' exonuclease [Plasmodium knowlesi strain H]
gi|193807817|emb|CAQ38522.1| 3'-5' exonuclease, putative [Plasmodium knowlesi strain H]
Length = 384
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 14/170 (8%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETV--VKACKPALESSYITKVIHD 109
IG D EG + R+G++ ++Q+ D +YL D + T +K K LE I K+ HD
Sbjct: 78 IGLDVEGYKIGRNGTVSLVQICAQD-VYLFDVYKCDNTFLFIKCLKELLEDGRIVKITHD 136
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR---KRSPDDYISFVGLLADPRYCGI 166
C+ D L+ Q+ I L+N+ DTQ+AY+L+ ++ + + S DD + LL +
Sbjct: 137 CREDCSILFNQYSISLNNIFDTQVAYNLLSKETKKDLYQISYDDLLYKCLLLHN------ 190
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ K ++ D + + RP+ + ++ A DV +L + N++ +L
Sbjct: 191 --KHKIYFHKMISLDQKIYLKRPIGKELIHYAIQDVIYLKPLMLNLVDRL 238
>gi|321470528|gb|EFX81504.1| hypothetical protein DAPPUDRAFT_303477 [Daphnia pulex]
Length = 812
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 85/166 (51%), Gaps = 7/166 (4%)
Query: 49 QLVIGFDCEGVDLC-RHGSLCIMQLAFPDA-IYLVDAIQGGETVVKACKPALE-SSYITK 105
Q V+ D EGV++ +G + + + P IY+ D I + + L S I K
Sbjct: 361 QKVVSLDLEGVNVGGNNGEVTLAVIGLPSGVIYIFDLITCPAIMSQGMLANLIISKEIVK 420
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYC 164
V HDCK DS AL + +KL NV DTQ A+++++ QE GR S + + Y
Sbjct: 421 VCHDCKNDSAALNLGWNVKLENVFDTQAAHAVVQLQETGRAVHKVKTTSLNAMCEN--YD 478
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR-FLPYIY 209
+ KE V+ + ++D +FW RPLT M+ AA DV +P++Y
Sbjct: 479 LPTNPFKELVKTIYKRDQRFWARRPLTRDMILYAAYDVMPLVPHLY 524
>gi|348520666|ref|XP_003447848.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
[Oreochromis niloticus]
Length = 467
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK-ACKPALESSYITK 105
++Q VIG EGV++ ++G LC +Q+A + +YL D + G K LES +I K
Sbjct: 36 KKQHVIGVGAEGVEVFKNGRLCWLQIATKNKVYLFDVLLLGARAFKNGLAVILESKHILK 95
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
VIHDC+ + L QFG+KL NV DTQ+A
Sbjct: 96 VIHDCRAIAGCLIAQFGVKLANVFDTQVA 124
>gi|68073827|ref|XP_678828.1| 3'-5' exonuclease [Plasmodium berghei strain ANKA]
gi|56499420|emb|CAI00231.1| 3'-5' exonuclease, putative [Plasmodium berghei]
Length = 383
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 8/163 (4%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 67 NENLKIIGLDIEGYKIGKNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKSI 125
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 126 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYTLILKKSKKELYQ---ISYDDLLYKCLF 182
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLP 206
++ K ++ + + + RP+++ ++ A DV +L
Sbjct: 183 --LNNNHKIYFHKIISLNNKIYLKRPISKELIHYAVQDVLYLK 223
>gi|354471775|ref|XP_003498116.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1
[Cricetulus griseus]
gi|344241168|gb|EGV97271.1| Exonuclease 3'-5' domain-containing protein 1 [Cricetulus griseus]
Length = 571
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQSVLSVAAEGTNVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-----GLLAD 160
VIHDC+ S+ L Q+GI L+NV DTQ+A L E P+ + L
Sbjct: 214 VIHDCRWLSDCLSHQYGIMLNNVFDTQVADVLQFSMETGGFLPNCISTLQESLIRHLKVA 273
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFW 185
P+Y EE + L++++P+ W
Sbjct: 274 PKYLSF----LEERQKLIQENPEVW 294
>gi|308808822|ref|XP_003081721.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
gi|116060187|emb|CAL56246.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri]
Length = 408
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 25/197 (12%)
Query: 32 TNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQG----- 86
TNA + +E E V+ DCEGV + R G + ++Q A D IYL+D IQ
Sbjct: 173 TNADTVLKTCVEAMREAD-VVAVDCEGVMMSRTGPITVLQCATRDKIYLID-IQALGVKA 230
Query: 87 -GETVVKACKPALESSYI-TKVIHDCKRDSEALYFQFGIKLHNVVDTQI-------AYSL 137
G + LES K++ DC+ DS+AL+ Q+ ++L NV+D QI A L
Sbjct: 231 FGARGSGGMRDLLESREAPLKLMFDCRMDSDALFHQYDVRLENVMDVQILDLATRRALGL 290
Query: 138 -IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLR-QDPQFWTYRPLTELMV 195
I+ G + D +++ ++ K VR L ++ Q W RPLTE
Sbjct: 291 MIDRVAGIAKCTDKHLT-------EAETAVAADLKVRVRKLYAVEESQLWAERPLTEDAR 343
Query: 196 RAAADDVRFLPYIYHNM 212
R AA DV L +Y M
Sbjct: 344 RYAALDVWLLIKLYDKM 360
>gi|398020902|ref|XP_003863614.1| hypothetical protein, unknown function [Leishmania donovani]
gi|322501847|emb|CBZ36929.1| hypothetical protein, unknown function [Leishmania donovani]
Length = 754
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP---ALESSYITKV 106
L I D EG L R GS+CI+ LA +Y++D + G +++ P LES I K+
Sbjct: 548 LTIALDLEGRSLGRMGSICIITLATYSTVYIIDVVMLGAEALRSGSPLQRVLESRDIMKL 607
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDTQIA--YSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
+ DC+ D +AL+F + ++L NV D QI+ ++L +++ +GL D
Sbjct: 608 MFDCRADCDALFFLYCVRLQNVCDLQISSCFALFPTSPHLPGMKSVFLA-LGLFTD-EDT 665
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
GI + W RPLT+++V+ A DV++
Sbjct: 666 GIKNAGRHLFNPRCGGSFDRWEERPLTDVLVQYCAVDVKYF 706
>gi|146096632|ref|XP_001467873.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
gi|134072239|emb|CAM70942.1| hypothetical protein, unknown function [Leishmania infantum JPCM5]
Length = 754
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP---ALESSYITKV 106
L I D EG L R GS+CI+ LA +Y++D + G +++ P LES I K+
Sbjct: 548 LTIALDLEGRSLGRMGSICIITLATYSTVYIIDVVMLGAEALRSGSPLQRVLESRDIMKL 607
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDTQIA--YSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
+ DC+ D +AL+F + ++L NV D QI+ ++L +++ +GL D
Sbjct: 608 MFDCRADCDALFFLYCVRLQNVCDLQISSCFALFPTSPHLPGMKSVFLA-LGLFTD-EDT 665
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
GI + W RPLT+++V+ A DV++
Sbjct: 666 GIKNAGRHLFNPRCGGSFDRWEERPLTDVLVQYCAVDVKYF 706
>gi|83285930|ref|XP_729939.1| 3'-5' exonuclease [Plasmodium yoelii yoelii 17XNL]
gi|23489160|gb|EAA21504.1| 3'-5' exonuclease, putative [Plasmodium yoelii yoelii]
Length = 284
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 8/132 (6%)
Query: 79 YLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI 138
Y+ D + ++V+ + K +E+ KVIHDC+ DS ALY Q IK NV DT A+ L+
Sbjct: 18 YIFDLL--NKSVINSVKKIIENKKTLKVIHDCREDSSALYNQLDIKFENVYDTLRAHMLL 75
Query: 139 EEQEGRKRSPDDY-ISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRA 197
E +K+ D Y ISF+ LL D Y G+ ++ + ++ + W RPL+++ +
Sbjct: 76 LE---KKKENDIYQISFLNLLHD--YLGVKDDCLNNIKKEMYKNEKIWEIRPLSKISIIY 130
Query: 198 AADDVRFLPYIY 209
A +V++L IY
Sbjct: 131 ALKNVKYLLPIY 142
>gi|401427101|ref|XP_003878034.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494281|emb|CBZ29580.1| hypothetical protein, unknown function [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 750
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 11/163 (6%)
Query: 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP---ALESSYITKV 106
L I D EG L R GS+CI+ LA +Y++D + G ++A P LES I K+
Sbjct: 548 LTIALDLEGRSLGRMGSICIITLATYSTVYIIDVVMLGPEALRAGSPLKGVLESRDIMKL 607
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDTQIA--YSLIEEQEGRKRSPDDYISF--VGLLADPR 162
+ D + D +AL+F + ++L NV D QI+ ++L R P F +GL D
Sbjct: 608 MFDGRADCDALFFLYCVRLQNVCDLQISSCFALFPTS---PRLPGMKSVFLALGLFTD-E 663
Query: 163 YCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
GI + L W RPLT+++V+ A DV++
Sbjct: 664 DTGIKNAGRRLFNPLCGGSFDRWEERPLTDVLVQYCAVDVKYF 706
>gi|321478345|gb|EFX89302.1| hypothetical protein DAPPUDRAFT_310282 [Daphnia pulex]
Length = 438
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET-VVKACKPALESSYITK 105
E++ V+G EGV R G +C + +A D ++L D G T V + + + K
Sbjct: 190 EKESVVGLSMEGVRTGRFGVVCWIGVATSDHVFLFDMCSLGSTGVNRGLANIFTNDKVIK 249
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQI-AYSLIEEQEG--RKRSPDDYISFVGLLADPR 162
VIHDC+ S+A Q+G+KL+NV DTQ+ A +++ + G + P S +L P
Sbjct: 250 VIHDCRFMSDAFVHQYGVKLNNVFDTQVGALVVVKNKHGSFNRYVPSLTRSLTDILNLP- 308
Query: 163 YCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+S + ++D W RPL + ++ A +V +L + +M+ L
Sbjct: 309 --SMSMYHPRKRMGHEKEDEAIWKTRPLPQHLIEGAVFNVCWLRKLRLAIMEIL 360
>gi|327259620|ref|XP_003214634.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
[Anolis carolinensis]
Length = 437
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 6/157 (3%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK-ACKPALESSYITK 105
++Q V G EG++LCR+G L +Q+A ++L D G V K + LE +I K
Sbjct: 94 KKQTVCGIAAEGINLCRYGKLSWLQVATRSQVFLFDIFLLGPRVFKNGLQIILEDQHILK 153
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
VIHDC+ S+ L Q+GI+L NV DTQ+A + E P + L + Y G
Sbjct: 154 VIHDCRWLSDCLSHQYGIELTNVFDTQVADVMQFSVETGGFLPLRISNLQECLIE--YLG 211
Query: 166 ISYQEKEEVRVLLRQ---DPQFWTYRPLTELMVRAAA 199
+S ++ + + R+ +P W RPL+ ++ A
Sbjct: 212 MSRKDVSFMDLRQREIERNPDVWFMRPLSPALLNVLA 248
>gi|452989124|gb|EME88879.1| hypothetical protein MYCFIDRAFT_149452 [Pseudocercospora fijiensis
CIRAD86]
Length = 280
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 54 FDCEGVDLCRHGSLCIMQLAFPDAI--YLVD--AIQGG----ETVVKACKPALESSYITK 105
FDCEG +L RHG++ ++ + PD + ++VD + G E ++ K ES I K
Sbjct: 54 FDCEGENLGRHGTVTLLAIYVPDLLRAFVVDLQELDGNALTTEGQGESLKTIFESPKILK 113
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
+ DC+ D EAL+ + + L +VD Q+ + + R D I DP
Sbjct: 114 GVFDCRGDGEALFAHYNLNLDGIVDVQLMEAATRKNSKRLFGLDVCIKNRLKDLDP-TAK 172
Query: 166 ISYQE-KEEVRVLLRQ-DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
+ + E KE V+ L+R D + RPL +L++ AA DV LP +Y + N + W
Sbjct: 173 VKFSECKESVKELMRSGDGLCFAERPLPKLLLEYAASDVIVLPMLYEHFA---NHECYW 228
>gi|432139855|gb|AGB05865.1| 3'-5' exonuclease, partial [Plasmodium chabaudi adami]
Length = 193
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + VK K E+ I
Sbjct: 48 NENLKIIGLDIEGYKIGRNGTVSIIQVCAKD-IYIFDLYKCDNSYLFVKYLKELFENKNI 106
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 107 IKVAHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 163
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMV 195
++ K ++ D + + RP+++ ++
Sbjct: 164 --LNNNHKIYFHKIISLDNKIYLKRPISKELI 193
>gi|432139871|gb|AGB05873.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
gi|432139881|gb|AGB05878.1| 3'-5' exonuclease, partial [Plasmodium chabaudi]
Length = 191
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + VK K E+ I
Sbjct: 46 NENLKIIGLDIEGYKIGRNGTVSIIQVCAKD-IYIFDLYKCDNSYLFVKYLKELFENKNI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 105 IKVAHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 161
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMV 195
++ K ++ D + + RP+++ ++
Sbjct: 162 --LNNNHKIYFHKIISLDNKIYLKRPISKELI 191
>gi|402874068|ref|XP_003900868.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like,
partial [Papio anubis]
Length = 288
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFNNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
VIHDC+ S+ L Q+GI L+NV DTQ+A
Sbjct: 214 VIHDCRWLSDCLSHQYGILLNNVFDTQVA 242
>gi|432139859|gb|AGB05867.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
gi|432139867|gb|AGB05871.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
gi|432139909|gb|AGB05892.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
Length = 188
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + VK K E+ I
Sbjct: 46 NENLKIIGLDIEGYKIGRNGTVSIIQVCAKD-IYIFDLYKCDNSYLFVKYLKELFENKNI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 105 IKVAHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 161
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 162 --LNNNHKIYFHKIISLDNKIYLKRPISK 188
>gi|432139877|gb|AGB05876.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
Length = 187
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + VK K E+ I
Sbjct: 45 NENLKIIGLDIEGYKIGRNGTVSIIQVCAKD-IYIFDLYKCDNSYLFVKYLKELFENKNI 103
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 104 IKVAHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 160
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 161 --LNNNHKIYFHKIISLDNKIYLKRPISK 187
>gi|432139857|gb|AGB05866.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
gi|432139861|gb|AGB05868.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
gi|432139863|gb|AGB05869.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
gi|432139865|gb|AGB05870.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
gi|432139873|gb|AGB05874.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
gi|432139879|gb|AGB05877.1| 3'-5' exonuclease, partial [Plasmodium chabaudi]
Length = 188
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + VK K E+ I
Sbjct: 46 NENLKIIGLDIEGYKIGRNGTVSIIQVCAKD-IYIFDLYKCDNSYLFVKYLKELFENKNI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 105 IKVAHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 161
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 162 --LNNNHKIYFHKIISLDNKIYLKRPISK 188
>gi|432139869|gb|AGB05872.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
Length = 188
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + VK K E+ I
Sbjct: 46 NENLKIIGLDIEGYKIGRNGTVSIIQVCAKD-IYIFDLYKCDNSYLFVKYLKELFENKNI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 105 IKVAHDCREDCSILFNQYNINLNNIFDTQIAYNLILKRSKKELYQ---ISYDDLLYKCLF 161
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 162 --LNNNHKIYFHKIISLDNKIYLKRPISK 188
>gi|403289409|ref|XP_003935851.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Saimiri
boliviensis boliviensis]
Length = 523
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EGV++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQSVLSVAAEGVNVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFNNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQ 132
VIHDC+ S+ L Q+GI L+NV DTQ
Sbjct: 214 VIHDCRWLSDCLSHQYGILLNNVFDTQ 240
>gi|432139929|gb|AGB05902.1| 3'-5' exonuclease, partial [Plasmodium yoelii yoelii]
Length = 193
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 48 NENLKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 106
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 107 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 163
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMV 195
++ K ++ D + + RP+++ ++
Sbjct: 164 --LNNNHKIYFHKIISLDNKIYLKRPISKELI 193
>gi|432139875|gb|AGB05875.1| 3'-5' exonuclease, partial [Plasmodium chabaudi chabaudi]
Length = 187
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + VK K E+ I
Sbjct: 46 NENLKIIGLDIEGYKIGRNGTVSIIQVCAKD-IYIFDLYKCDNSYLFVKYLKELFENKNI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 105 IKVAHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 161
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLT 191
++ K ++ D + + RP++
Sbjct: 162 --LNNNHKIYFHKIISLDNKIYLKRPIS 187
>gi|432139925|gb|AGB05900.1| 3'-5' exonuclease, partial [Plasmodium yoelii yoelii]
Length = 193
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 48 NENLKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 106
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 107 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 163
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMV 195
++ K ++ D + + RP+++ ++
Sbjct: 164 --LNNNHKIYFHKIISLDNKIYLKRPISKELI 193
>gi|432139921|gb|AGB05898.1| 3'-5' exonuclease, partial [Plasmodium yoelii]
gi|432139923|gb|AGB05899.1| 3'-5' exonuclease, partial [Plasmodium yoelii]
gi|432139937|gb|AGB05906.1| 3'-5' exonuclease, partial [Plasmodium yoelii yoelii]
gi|432139941|gb|AGB05908.1| 3'-5' exonuclease, partial [Plasmodium yoelii yoelii]
Length = 194
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 49 NENLKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 107
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 108 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 164
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMV 195
++ K ++ D + + RP+++ ++
Sbjct: 165 --LNNNHKIYFHKIISLDNKIYLKRPISKELI 194
>gi|395837912|ref|XP_003791872.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing
protein 1 [Otolemur garnettii]
Length = 533
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q V+ EG ++CRHG LC +Q+A +YL D + G + LE I K
Sbjct: 154 KKQSVLSVAAEGANVCRHGKLCWLQVATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILK 213
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQ 132
VIHDC+ S+ L Q+GI L+NV DTQ
Sbjct: 214 VIHDCRWLSDCLSHQYGILLNNVFDTQ 240
>gi|255074453|ref|XP_002500901.1| predicted protein [Micromonas sp. RCC299]
gi|226516164|gb|ACO62159.1| predicted protein [Micromonas sp. RCC299]
Length = 316
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 20/232 (8%)
Query: 12 PLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQ 71
P + P +P+ S P I+ + A+ + R D EGV L R G++ + Q
Sbjct: 59 PSTVAPPERPLTSTPPRVILLDDPGSCADAMRELIARGEPCAVDFEGVALSRTGAISLAQ 118
Query: 72 LAFPDA-IYLVDAIQGGETVVKACKPA--LESSYITKVIHDCKRDSEALYFQFGIKLHNV 128
+A P+ +YLVD G + L +++ K++ DC+ D++AL+ QFG+++ V
Sbjct: 119 VAPPNGPVYLVDVACMGAAAFDEGRLGELLGATHPLKLVFDCRGDADALHHQFGVRMRGV 178
Query: 129 VDTQIAYSLIEE-QEGRKRSPDDYISFVGLLADPRYC-GISYQEKEEVRVLLRQDPQF-- 184
D Q+A+ L ++ G KR +GL + C G+ + + E+ +
Sbjct: 179 FDVQVAFCLKKDVDHGGKRG----AYLMGLRKALKECPGLDDEARHELDAVKSAGASLFA 234
Query: 185 ---------WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVR 227
WT RP+ +V+ AA DV +L +++ ++ + + R
Sbjct: 235 PELGGSYDAWTKRPMHPDLVKYAAADVTYLHHMHRTWRGFCGEKKMAAVTER 286
>gi|432139903|gb|AGB05889.1| 3'-5' exonuclease, partial [Plasmodium vinckei]
Length = 187
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 45 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 103
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D LY Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 104 IKVTHDCREDCSILYNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 160
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 161 --LNNNHKIYFHKIISLDNKIYLKRPISK 187
>gi|432139901|gb|AGB05888.1| 3'-5' exonuclease, partial [Plasmodium vinckei]
Length = 188
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 46 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D LY Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 105 IKVTHDCREDCSILYNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 161
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 162 --LNNNHKIYFHKIISLDNKIYLKRPISK 188
>gi|47230240|emb|CAG10654.1| unnamed protein product [Tetraodon nigroviridis]
Length = 464
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK-ACKPALESSYITK 105
++Q VIG G+ + HG LC +Q+A +YL D + G + LES I K
Sbjct: 25 KQQCVIGVGAGGLKMSEHGRLCWLQIATKKRVYLFDILLLGSMAFRNGISSILESKEILK 84
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
V+HDC+ + L QFG+KL+NV DTQ+A
Sbjct: 85 VLHDCREIAGFLMGQFGVKLNNVFDTQVA 113
>gi|432139943|gb|AGB05909.1| 3'-5' exonuclease, partial [Plasmodium yoelii yoelii]
Length = 146
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 9 NENXKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 67
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI---EEQEGRKRSPDD 150
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++E + S DD
Sbjct: 68 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQISYDD 117
>gi|358392107|gb|EHK41511.1| hypothetical protein TRIATDRAFT_28531 [Trichoderma atroviride IMI
206040]
Length = 231
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 27/186 (14%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFP--DAIYLVDAIQGGETVVKAC-------KPALESSY 102
I D EGV LCRHG++ I+Q+ D +YLVD + G+ C K LES
Sbjct: 15 IYIDLEGVKLCRHGTISILQMYIHPLDRVYLVDVLVLGDESFSTCGESGLSFKNILESRE 74
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR 162
I KV D + DS+AL+ F IKL ++D Q+ + + +P ++S + + R
Sbjct: 75 IPKVFFDVRNDSDALHHHFQIKLAGILDLQLM------ELATRNTPRRFVSGLAKCIE-R 127
Query: 163 YCGISYQEKEEVRVLLRQDPQFWT-----------YRPLTELMVRAAADDVRFLPYIYHN 211
+SY E+ + Q + + RPL + A DV+ LP ++ +
Sbjct: 128 DAPLSYSERRNWMRIKDQGNRLFKPEDGGSYEVFIERPLQRDISLYCAQDVQILPRLWEH 187
Query: 212 MMKKLN 217
KK+
Sbjct: 188 YGKKIT 193
>gi|432139939|gb|AGB05907.1| 3'-5' exonuclease, partial [Plasmodium yoelii yoelii]
Length = 151
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 10 NENLKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 68
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 69 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 125
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLT 191
++ K ++ D + + RP++
Sbjct: 126 --LNNNHKIYFHKIISLDNKIYLKRPIS 151
>gi|432139889|gb|AGB05882.1| 3'-5' exonuclease, partial [Plasmodium vinckei lentum]
Length = 191
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 49 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 107
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D LY Q+ I L+N+ DTQIAY+LI + ++ IS+ LL +
Sbjct: 108 IKVTHDCREDCSILYNQYNINLNNIFDTQIAYNLILKNSKKELYQ---ISYDDLLYKCLF 164
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 165 --LNNNHKIYFHKIISLDNKIYLKRPISK 191
>gi|412992429|emb|CCO18409.1| predicted protein [Bathycoccus prasinos]
Length = 394
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 12/175 (6%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ-GGETVVK--ACKPALESSYI 103
+R VI +DCEGV L R G + ++Q+A P I+L+D + GG+ V K +ES I
Sbjct: 167 KRAKVIAYDCEGVRLSRTGKITLLQIAIPKKIFLIDVMTIGGKEVFTDGGLKDIIESEEI 226
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
K+ +D + DS+AL+ Q + L NV+D Q+ I G +++ + R
Sbjct: 227 LKLAYDVRMDSDALFHQHDVVLKNVLDLQLLDIAIRRAAG---GIVEHLPSLSKTVSRRL 283
Query: 164 CGISYQEKEEVRVLLR------QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
E+++ ++ +D W RPL + R AA D L + M
Sbjct: 284 TNAEILVCEDLKKRVKNMYTSVEDGDLWARRPLIDDARRYAALDAWVLMKLDQAM 338
>gi|432139927|gb|AGB05901.1| 3'-5' exonuclease, partial [Plasmodium yoelii yoelii]
Length = 190
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 49 NENLKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 107
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 108 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 164
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLT 191
++ K ++ D + + RP++
Sbjct: 165 --LNNNHKIYFHKIISLDNKIYLKRPIS 190
>gi|432139913|gb|AGB05894.1| 3'-5' exonuclease, partial [Plasmodium yoelii killicki]
Length = 194
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 49 NENLKIIGLDIEGYKIGKNGTISIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 107
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 108 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 164
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMV 195
++ K ++ D + + RP+++ ++
Sbjct: 165 --LNNNHKIYFHKIISLDNKIYLKRPISKELI 194
>gi|432139933|gb|AGB05904.1| 3'-5' exonuclease, partial [Plasmodium yoelii yoelii]
Length = 184
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 47 NENLKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 105
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI---EEQEGRKRSPDD 150
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++E + S DD
Sbjct: 106 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQISYDD 155
>gi|432139931|gb|AGB05903.1| 3'-5' exonuclease, partial [Plasmodium yoelii yoelii]
Length = 184
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 47 NENLKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 105
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI---EEQEGRKRSPDD 150
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++E + S DD
Sbjct: 106 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQISYDD 155
>gi|432139935|gb|AGB05905.1| 3'-5' exonuclease, partial [Plasmodium yoelii yoelii]
Length = 185
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 48 NENLKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 106
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI---EEQEGRKRSPDD 150
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++E + S DD
Sbjct: 107 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQISYDD 156
>gi|432139919|gb|AGB05897.1| 3'-5' exonuclease, partial [Plasmodium yoelii]
Length = 184
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + R+G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 49 NENLKIIGLDIEGYKIGRNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 107
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI---EEQEGRKRSPDD 150
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++E + S DD
Sbjct: 108 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQISYDD 157
>gi|432139897|gb|AGB05886.1| 3'-5' exonuclease, partial [Plasmodium vinckei]
gi|432139899|gb|AGB05887.1| 3'-5' exonuclease, partial [Plasmodium vinckei]
Length = 193
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 48 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 106
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 107 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 163
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMV 195
++ K ++ D + + RP+++ ++
Sbjct: 164 --LNNNHKIYFHKIISLDNKIYLKRPISKELI 193
>gi|432139887|gb|AGB05881.1| 3'-5' exonuclease, partial [Plasmodium vinckei lentum]
Length = 187
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 6/110 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 49 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 107
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI---EEQEGRKRSPDD 150
KV HDC+ D LY Q+ I L+N+ DTQIAY+LI ++E + S DD
Sbjct: 108 IKVTHDCREDCSILYNQYNINLNNIFDTQIAYNLILKNSKKELYQISYDD 157
>gi|432139905|gb|AGB05890.1| 3'-5' exonuclease, partial [Plasmodium vinckei vinckei]
Length = 191
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 46 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYMFAKYLKELFENKNI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 105 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 161
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMV 195
++ K ++ D + + RP+++ ++
Sbjct: 162 --LNNNHKIYFHKIISLDNKIYLKRPISKELI 191
>gi|432139915|gb|AGB05895.1| 3'-5' exonuclease, partial [Plasmodium yoelii killicki]
Length = 191
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 49 NENLKIIGLDIEGYKIGKNGTISIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 107
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 108 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 164
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 165 --LNNNHKIYFHKIISLDNKIYLKRPISK 191
>gi|390359561|ref|XP_003729508.1| PREDICTED: uncharacterized protein LOC100893717 [Strongylocentrotus
purpuratus]
Length = 569
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 94/189 (49%), Gaps = 25/189 (13%)
Query: 41 FLEPSSERQLVIGFDCEGVDLCRHG-SLCIMQLAFPDA---IYLVDAIQGGETVVKA--C 94
F + + LVI FDC+G L + ++QL+ D I+ V +G +++K
Sbjct: 362 FKDAAKAGMLVISFDCKGPVLEDDKMEVALVQLSTIDGEVWIFDVTEKEGKTSLMKEGRL 421
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSL---------IEEQEGRK 145
K LE+ + KV+HDC + L+ QF +K+ NV DT +AY +E + R
Sbjct: 422 KELLEAECVMKVMHDCLNTATNLFRQFEVKMCNVFDTTLAYETLLNQCNIFPVEHEVTRH 481
Query: 146 RSPDDYISFVGLLADPRYCGISYQ-EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
R + L + G +Y+ E +++ +L+ +P W RPL+E +V+ AA VR
Sbjct: 482 R--------IELSSLCEMVGETYKGEDDKMSEVLKNNPHMWDDRPLSEDLVKYAAGTVRA 533
Query: 205 L-PYIYHNM 212
L P +++ +
Sbjct: 534 LVPRVFNKL 542
>gi|432139911|gb|AGB05893.1| 3'-5' exonuclease, partial [Plasmodium yoelii nigeriensis]
Length = 188
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 46 NENLKIIGLDVEGYKIGKNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 105 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 161
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 162 --LNNNHKIYFHKIISLDNKIYLKRPISK 188
>gi|301620462|ref|XP_002939597.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing
protein 1-like [Xenopus (Silurana) tropicalis]
Length = 490
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK-ACKPALESSYITK 105
+ Q VI G ++CRHG L +Q A +YL D + G V K + LE + I K
Sbjct: 157 QNQKVISIGAVGQNICRHGKLSWLQFATKSRVYLFDVLVLGSKVFKNGLQMVLEDTGILK 216
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
VIHDC+ + L +Q+GI L+NV DTQ+
Sbjct: 217 VIHDCRWLGDILSYQYGIILNNVFDTQVG 245
>gi|432139907|gb|AGB05891.1| 3'-5' exonuclease, partial [Plasmodium vinckei vinckei]
Length = 190
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 48 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYMFAKYLKELFENKNI 106
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 107 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 163
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 164 --LNNNHKIYFHKIISLDNKIYLKRPISK 190
>gi|432139895|gb|AGB05885.1| 3'-5' exonuclease, partial [Plasmodium vinckei]
Length = 188
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 46 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 105 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 161
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 162 --LNNNHKIYFHKIISLDNKIYLKRPISK 188
>gi|432139893|gb|AGB05884.1| 3'-5' exonuclease, partial [Plasmodium vinckei petteri]
Length = 166
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 23 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 81
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 82 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 138
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 139 --LNNNHKIYFHKIISLDNKIYLKRPISK 165
>gi|432139883|gb|AGB05879.1| 3'-5' exonuclease, partial [Plasmodium vinckei brucechwatti]
Length = 187
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 45 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 103
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 104 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 160
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 161 --LNNNHKIYFHKIISLDNKIYLKRPISK 187
>gi|432139891|gb|AGB05883.1| 3'-5' exonuclease, partial [Plasmodium vinckei petteri]
Length = 189
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 46 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 105 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 161
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
++ K ++ D + + RP+++
Sbjct: 162 --LNNNHKIYFHKIISLDNKIYLKRPISK 188
>gi|432139847|gb|AGB05861.1| 3'-5' exonuclease, partial [Plasmodium berghei]
gi|432139851|gb|AGB05863.1| 3'-5' exonuclease, partial [Plasmodium berghei]
Length = 188
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 46 NENLKIIGLDIEGYKIGKNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKSI 104
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ +
Sbjct: 105 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYTLILKKSKK 145
>gi|432139917|gb|AGB05896.1| 3'-5' exonuclease, partial [Plasmodium yoelii nigeriensis]
Length = 160
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 48 NENLKIIGLDVEGYKIGKNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 106
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ +
Sbjct: 107 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKK 147
>gi|432139853|gb|AGB05864.1| 3'-5' exonuclease, partial [Plasmodium berghei]
Length = 191
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 49 NENLKIIGLDIEGYKIGKNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKSI 107
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ +
Sbjct: 108 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYTLILKKSKK 148
>gi|432139885|gb|AGB05880.1| 3'-5' exonuclease, partial [Plasmodium vinckei brucechwatti]
Length = 186
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 8/148 (5%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 45 NENLKIIGLDIEGYKIGKNGTVSIIQVCAKD-IYIFDLYKCDNSYLFAKYLKELFENKNI 103
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ ++ IS+ LL +
Sbjct: 104 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYNLILKKSKKELYQ---ISYDDLLYKCLF 160
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLT 191
++ K ++ D + + RP++
Sbjct: 161 --LNNNHKIYFHKIISLDNKIYLKRPIS 186
>gi|432139849|gb|AGB05862.1| 3'-5' exonuclease, partial [Plasmodium berghei]
Length = 192
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 46 SERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV--KACKPALESSYI 103
+E +IG D EG + ++G++ I+Q+ D IY+ D + + + K K E+ I
Sbjct: 49 NENLKIIGLDIEGYKIGKNGTVSIIQICAKD-IYIFDLYKCDNSYLFAKYLKELFENKSI 107
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
KV HDC+ D L+ Q+ I L+N+ DTQIAY+LI ++ +
Sbjct: 108 IKVTHDCREDCSILFNQYNINLNNIFDTQIAYTLILKKSKK 148
>gi|390371169|dbj|GAB65050.1| 3'-5' exonuclease domain containing protein [Plasmodium cynomolgi
strain B]
Length = 397
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 85/170 (50%), Gaps = 14/170 (8%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYITKVIHD 109
+G D EG + R+G++ ++Q+ D +YL D + + K LE I K+ HD
Sbjct: 60 MGVDVEGYKIGRNGTVSLIQICAQD-VYLFDVYKCDNIYLFINCLKELLEDRRIVKITHD 118
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLI---EEQEGRKRSPDDYISFVGLLADPRYCGI 166
C+ D L+ Q+ I L+N+ DTQ+A++L+ ++E + S DD + LL +
Sbjct: 119 CREDCSILFNQYSISLNNIFDTQVAFNLLLKETKKELYQISYDDLLYKCLLLNN------ 172
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
K ++ D + + RP+ + ++ A DV +L + N++ +L
Sbjct: 173 --MHKIYFHKVISLDQKIYLKRPIAKELIHYAIQDVIYLKPLMLNLVDRL 220
>gi|170050482|ref|XP_001861331.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872069|gb|EDS35452.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 708
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 2/132 (1%)
Query: 3 SSPSHQTHIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC 62
SSP H + + K + + I V + + L+ + E Q VI FDCEG++L
Sbjct: 558 SSPVHSNNYFIGDTWKIKVLQNTRVISTVKESLFVTQAILKSAYEDQTVISFDCEGINLG 617
Query: 63 RHGSLCIMQLAFPDA-IYLVDAIQGGETVVKA-CKPALESSYITKVIHDCKRDSEALYFQ 120
G + ++QL ++ D + V K LE+ + KVIHDC+ DS LY Q
Sbjct: 618 VRGQITMIQLGTTRGEAFIFDVATCPDMVPHGGIKQVLEAEKVIKVIHDCRNDSVNLYNQ 677
Query: 121 FGIKLHNVVDTQ 132
F I L NV DTQ
Sbjct: 678 FQIMLRNVFDTQ 689
>gi|241121663|ref|XP_002403291.1| conserved hypothetical protein [Ixodes scapularis]
gi|215493400|gb|EEC03041.1| conserved hypothetical protein [Ixodes scapularis]
Length = 609
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 22/202 (10%)
Query: 45 SSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVV-KACKPALESSYI 103
+ E + +GF EG + R+G L ++ + +++ D + +T+ K + LES I
Sbjct: 165 NREASIAVGF--EGSPVGRNGCLSVLAVVAGTKVFIFDVLTLKDTLFDKGLRQVLESKTI 222
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIA-----YSLIEEQEGRKRSPDDYISFVGLL 158
KVIH C+ S+ LY +F ++L NV DTQ+A Y+ + G R P SFV +
Sbjct: 223 EKVIHGCRHLSDCLYHKFRVQLDNVFDTQVADLFIHYNRLGNDRGGCRLP----SFVRGV 278
Query: 159 AD--PRYCGISYQEKEEVRVLLRQ---DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMM 213
+ +S+ + + R Q + W RPL+ + A DV FLP +
Sbjct: 279 QQCLRHFLHLSHDQLKYTRSRQNQPEGELTVWHQRPLSLRQLDALVKDVAFLP-----EL 333
Query: 214 KKLNQQSLWYLAVRGALYCRCF 235
+++ Q+ RG Y C
Sbjct: 334 RRVCQEEFASGFWRGVRYNLCL 355
>gi|367027574|ref|XP_003663071.1| hypothetical protein MYCTH_2304497 [Myceliophthora thermophila ATCC
42464]
gi|347010340|gb|AEO57826.1| hypothetical protein MYCTH_2304497 [Myceliophthora thermophila ATCC
42464]
Length = 261
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 27/218 (12%)
Query: 41 FLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFP--DAIYLVDAIQGGETVV------- 91
+ +P++ L + D EG++L R+GS+ I+Q+ D YLVD G T
Sbjct: 24 YAQPTAPPSLYV--DLEGINLSRYGSISILQIYVRPLDQAYLVDIHTLGRTAFCTPGGAY 81
Query: 92 -----KACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKR 146
+ + LE + KV D + DS+ALY FG++L VVD Q+ L R
Sbjct: 82 TASAGRTLRDLLEDEAVAKVFFDVRNDSDALYSHFGVRLEGVVDLQL-MELATRPAPAVR 140
Query: 147 SPDDYISFV-------GLLADPRYCGISYQEKEEVRVL---LRQDPQFWTYRPLTELMVR 196
+ ++S + G+LA + + R+ L + RPLTE +
Sbjct: 141 PRNVFVSGLAKCIERDGVLAPAERVAWAAAKDRGRRLFAPELGGTYSVFNQRPLTEEVWL 200
Query: 197 AAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRC 234
+ DVRFLP ++ +L ++ W VR A R
Sbjct: 201 YSVQDVRFLPRLWALYDARLRRKPGWEHKVRDAARDRV 238
>gi|255080460|ref|XP_002503810.1| predicted protein [Micromonas sp. RCC299]
gi|226519077|gb|ACO65068.1| predicted protein [Micromonas sp. RCC299]
Length = 503
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 85/208 (40%), Gaps = 46/208 (22%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGE-----------TVVKACKPALE 99
V+ DCEGV++ R G++ ++Q+A D+ YL D G T + K LE
Sbjct: 250 VVAVDCEGVNMSRVGAITLLQVAAGDSAYLFDVQAMGRACFEMVSDASVTNGRNLKSVLE 309
Query: 100 SSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIA--------------YSLIEEQEGR- 144
+ K++ DC+ DS+AL+ Q G+ L NV D Q+A S + + GR
Sbjct: 310 DPKVVKLMFDCRVDSDALFHQHGVSLTNVFDVQLADVAARRANHHAVSLLSGMPKCAGRW 369
Query: 145 -------------KRSPDDYISFVGLLADPRYCGIS-------YQEKEEVRVLLRQDPQF 184
+ PD A P ++ + KE+ L D +
Sbjct: 370 LPKGPNQAEAALAAQGPDRAPIRSDSDAPPDAASVARVTEHLKRKVKEQYASNLGGDGEL 429
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNM 212
W RPL E + R AA D L IY M
Sbjct: 430 WAKRPLAEDVRRYAALDAWLLKEIYAAM 457
>gi|82237110|sp|Q6NRD5.1|EXD1_XENLA RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
AltName: Full=Exonuclease 3'-5' domain-like-containing
protein 1
gi|47124003|gb|AAH70821.1| Exdl1 protein [Xenopus laevis]
Length = 444
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK-ACKPALESSYITK 105
+ Q VI G ++CRHG L +Q A +YL D + G V K + LE I K
Sbjct: 118 QNQKVISIGAVGQNICRHGKLSWLQFATRSRVYLFDVLVLGSKVFKNGLQMVLEDKGILK 177
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
VIHDC+ + L Q+GI L+NV DTQ+
Sbjct: 178 VIHDCRWLGDILSHQYGIILNNVFDTQVG 206
>gi|352962154|ref|NP_001084849.2| exonuclease 3'-5' domain-containing protein 1 [Xenopus laevis]
Length = 483
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK-ACKPALESSYITK 105
+ Q VI G ++CRHG L +Q A +YL D + G V K + LE I K
Sbjct: 157 QNQKVISIGAVGQNICRHGKLSWLQFATRSRVYLFDVLVLGSKVFKNGLQMVLEDKGILK 216
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
VIHDC+ + L Q+GI L+NV DTQ+
Sbjct: 217 VIHDCRWLGDILSHQYGIILNNVFDTQVG 245
>gi|156093870|ref|XP_001612973.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax
Sal-1]
gi|148801847|gb|EDL43246.1| 3'-5' exonuclease domain containing protein [Plasmodium vivax]
Length = 428
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 87/170 (51%), Gaps = 14/170 (8%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYITKVIHD 109
IG D EG + R+G++ I+Q+ D +YL D + + VK K LE + K+ HD
Sbjct: 100 IGLDVEGYKIGRNGTVSIIQVCTQD-VYLFDLYKCDNSYLFVKCLKELLEDRRVIKITHD 158
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR---KRSPDDYISFVGLLADPRYCGI 166
C+ D L+ Q+ I L+ DTQ+A++L+ ++ + + S DD + LL +
Sbjct: 159 CREDCSILFNQYSICLNRTFDTQVAFNLLLKETKKDLYQISYDDLLYKCLLLNN------ 212
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ K ++ D + + RP+ + +++ A DV +L + +++ +L
Sbjct: 213 --KHKIYFHKMISLDQKIYLKRPIAKELIQYAIQDVIYLKPLMWSLVDRL 260
>gi|124800774|ref|XP_001349559.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7]
gi|3845126|gb|AAC71832.1| 3'-5' exonuclease, putative [Plasmodium falciparum 3D7]
Length = 416
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYITKVIH 108
+IG D EG + ++G + I+Q+ + D IY+ D + + K LE I KV H
Sbjct: 76 MIGLDIEGYKIGKYGIVSIIQICYED-IYIFDIYKCDNVYLFINYIKDILECDDIIKVTH 134
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
DC+ D LY Q+ I L N++DTQ+AY+L+ + + IS+ LL +Y I+
Sbjct: 135 DCREDCSILYNQYNIHLKNILDTQVAYNLLLKNNNNYTNTYQ-ISYDDLL--KKYLFINN 191
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLP 206
K ++ D + RP+ + ++ A DV +L
Sbjct: 192 NHKIYFHKMITLDNYIYLKRPIMKELISYAIQDVIYLK 229
>gi|326920474|ref|XP_003206497.1| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
[Meleagris gallopavo]
Length = 322
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q VI EGV+LCR+G L +Q+A I+L D + G + + LE I K
Sbjct: 70 KQQDVISVVGEGVNLCRNGKLSWLQMATKSHIFLFDIFLLGPQAFRNGLQTVLEDKNILK 129
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
V+HDC+ S+ L+ Q+ + L NV DTQ+A
Sbjct: 130 VMHDCRWISDCLFHQYNVLLDNVFDTQVA 158
>gi|327356611|gb|EGE85468.1| 3'-5' exonuclease [Ajellomyces dermatitidis ATCC 18188]
Length = 270
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 90/212 (42%), Gaps = 32/212 (15%)
Query: 44 PSSERQLVIGFDCEGVDLCRHGSLCIMQLAF--PDAIYLVDAIQGGE-------TVVKAC 94
PS+ L I D EG++LCR GS+ I+Q+ + +YLVD GE T K+
Sbjct: 24 PSNPPSLYI--DLEGINLCREGSISILQIFNHPKEHVYLVDIHHLGEAAFTTTGTNGKSL 81
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF 154
K LE KV D + DS AL+F FGI+L + D Q+ + G + P F
Sbjct: 82 KSILECPVTPKVFFDVRNDSNALFFHFGIRLQGIEDIQLM------ENGSRPGPLSRKKF 135
Query: 155 VGLLA---------DPRYCGISYQEKEEVRVLLRQDP----QFWTYRPLTELMVRAAADD 201
V LA P + + K++ L + + + RP+ + ++ D
Sbjct: 136 VSGLARCIEMDTPVSPAAKRLWKENKDKGTQLFAPERGGSHEVFNVRPIPQAIIDYCVQD 195
Query: 202 VRFLPYIYHNMMKKLNQQSLWYLAVRGALYCR 233
V F+P + KL W V GA R
Sbjct: 196 VSFMPLLRTLYWSKLTPH--WKSEVVGATKER 225
>gi|390333950|ref|XP_783820.3| PREDICTED: uncharacterized protein LOC578566 [Strongylocentrotus
purpuratus]
Length = 852
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 5/173 (2%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKV 106
E+Q IG +G L R G L ++ + + +Y+ D + + L+++ ITKV
Sbjct: 207 EQQSAIGLVLKGSRLGRKGKLSLVLVLCDEQVYMFDVLAVPSLFTRKFIDILQATNITKV 266
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGI 166
IHDC+ S+ LY +GI+L++V DTQ+ LI+ ++ P + + + Y I
Sbjct: 267 IHDCRFVSDLLYHHYGIELNSVFDTQVGDILIKRRQYMGDFPRNVSGTTQCILE--YLEI 324
Query: 167 SYQE---KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
S + E + +D W RPL ++ +R A D +L + + ++L
Sbjct: 325 SIHDIALHLENTQRIEEDESSWFQRPLPKVNIRCALLDTVYLLRLREAITEQL 377
>gi|261196313|ref|XP_002624560.1| 3'-5' exonuclease [Ajellomyces dermatitidis SLH14081]
gi|239587693|gb|EEQ70336.1| 3'-5' exonuclease [Ajellomyces dermatitidis SLH14081]
gi|239614653|gb|EEQ91640.1| 3'-5' exonuclease [Ajellomyces dermatitidis ER-3]
Length = 305
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 85/201 (42%), Gaps = 30/201 (14%)
Query: 55 DCEGVDLCRHGSLCIMQLAF--PDAIYLVDAIQGGE-------TVVKACKPALESSYITK 105
D EG++LCR GS+ I+Q+ + +YLVD GE T K+ K LE K
Sbjct: 33 DLEGINLCREGSISILQIFNHPKEHVYLVDIHHLGEAAFTTTGTNGKSLKSILECPVTPK 92
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLA------ 159
V D + DS AL+F FGI+L + D Q+ + G + P FV LA
Sbjct: 93 VFFDVRNDSNALFFHFGIRLQGIEDIQLM------ENGSRPGPLSRKKFVSGLARCIEMD 146
Query: 160 ---DPRYCGISYQEKEEVRVLLRQDP----QFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
P + + K++ L + + + RP+ + ++ DV F+P +
Sbjct: 147 TPVSPAAKRLWKENKDKGTQLFAPERGGSHEVFNVRPIPQAIIDYCVQDVSFMPLLRTLY 206
Query: 213 MKKLNQQSLWYLAVRGALYCR 233
KL W V GA R
Sbjct: 207 WSKLTPH--WKSEVVGATKER 225
>gi|159478793|ref|XP_001697485.1| 3'-5' exonuclease [Chlamydomonas reinhardtii]
gi|158274364|gb|EDP00147.1| 3'-5' exonuclease [Chlamydomonas reinhardtii]
Length = 253
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 47/213 (22%)
Query: 45 SSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDA----------IYLVDAIQGGETV---- 90
+ +QL + D EG+ L R G LC++ +A ++L+D T
Sbjct: 6 AGSKQLAV--DAEGISLGRTGKLCLLSIAPAPPPGAPADTPAPVFLLDVSALAATAFKHR 63
Query: 91 ---------------VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAY 135
V+ + LE +TK+++D + D+EALY Q G++L VD Q+A
Sbjct: 64 PAAGTSSGAAGGGGPVRTLQEVLECGRVTKLLYDVRCDAEALYHQHGVRLGGAVDLQLA- 122
Query: 136 SLIEEQEGRKRSPD-DYISFVGLLADPRYCGISYQEKEEVRVL------LR----QDPQF 184
E R+ P + +V LA +S + +E R LR +DP +
Sbjct: 123 ----EVAYRRYGPAMRRVGYVVGLARALETYLSPELRERWRATRVDKGALRDAYERDPGY 178
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
W RPLT+ VR A+DDV +L +++ L
Sbjct: 179 WDRRPLTQEQVRYASDDVLYLHHLHAQFKAALQ 211
>gi|147834273|emb|CAN74136.1| hypothetical protein VITISV_035477 [Vitis vinifera]
Length = 522
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 35/48 (72%)
Query: 18 DGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHG 65
D K + S+VPIH V SQLP EFLEPS E++ V+GFDCE VD C HG
Sbjct: 83 DHKVLLSLVPIHTVILPSQLPTEFLEPSLEKKXVVGFDCEXVDXCHHG 130
>gi|147765759|emb|CAN75626.1| hypothetical protein VITISV_001221 [Vitis vinifera]
Length = 780
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 35/48 (72%)
Query: 18 DGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHG 65
D K + S+VPIH V SQLP EFLEPS E++ V+GFDCE VD C HG
Sbjct: 678 DHKVLLSLVPIHTVILPSQLPTEFLEPSLEKKWVVGFDCEDVDPCHHG 725
>gi|331005546|ref|ZP_08328920.1| Ribonuclease D [gamma proteobacterium IMCC1989]
gi|330420648|gb|EGG94940.1| Ribonuclease D [gamma proteobacterium IMCC1989]
Length = 383
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 23/177 (12%)
Query: 49 QLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVI 107
Q I D E V + + ++Q+A + +YL+D + +T + L++ I KV+
Sbjct: 37 QSAIALDTEFVRTRTYYPHIGLLQIADENGVYLIDPLAISDT--QPMADVLQNPAIVKVV 94
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
H C D E + FG+ ++ DTQ+A G S I + LL + + I
Sbjct: 95 HACSEDLEVFQYAFGVLPESLFDTQVAAGF----AGYGSS----IGYANLLREIKRIDIP 146
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS--LW 222
QE R D W RPL++ +R AA DV +L IY +++KL QQ LW
Sbjct: 147 KQET-------RSD---WLQRPLSDAQLRYAALDVEYLLEIYRGLVEKLQQQQRLLW 193
>gi|405973647|gb|EKC38348.1| Exonuclease 3'-5' domain-containing protein 1 [Crassostrea gigas]
Length = 1024
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ-GGETVVKACKPALESSYITKVIHD 109
V+G +GV + R G +C +Q A ++L D ++ E + K LE+ + KV HD
Sbjct: 170 VVGLAMQGVCVGRSGEVCWVQFATDRDVFLFDILELPPECFEEGIKAILENPDVLKVTHD 229
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ-EGRKRSPDDYISFVGLLADPRYCGISY 168
C+ S+ L+ + IKL NV DTQ+A ++ +G K D+ +V LAD C +++
Sbjct: 230 CRLISDYLFHRHNIKLINVFDTQVADVFVDRLFKGGKGG--DWPRYVKGLAD---CALNH 284
Query: 169 QEKEEVRV--------LLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
E +V L + D + W RP++ ++ A +V L + +++K+
Sbjct: 285 LNLEPEQVLNLKTRERLKKHDEEIWATRPISRQLLDALYKNVVHLRPLRQVLIEKM 340
>gi|139437245|ref|ZP_01771405.1| Hypothetical protein COLAER_00384 [Collinsella aerofaciens ATCC
25986]
gi|133776892|gb|EBA40712.1| ribonuclease D [Collinsella aerofaciens ATCC 25986]
Length = 377
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 26/158 (16%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALE---SSYITKVIHDCKRDSEALYFQ 120
H LC++Q+A P VD + V+ P E +TKV H C +D E +
Sbjct: 35 HPRLCLVQIATPAESVAVDPL-----VIDDLSPLAELMADESVTKVFHACSQDMEVMLHT 89
Query: 121 FGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQ 180
G+ + DTQ+A + + E++ IS+ L+ +CG+S + E +
Sbjct: 90 VGVLPRPIFDTQVAAAFLGERQ--------QISYGALVQT--FCGVSLPKTESL------ 133
Query: 181 DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W+ RPLT+ + A DDV++L Y MM +L +
Sbjct: 134 --TDWSRRPLTDKQIEYAIDDVKYLIVAYTEMMSRLRE 169
>gi|361126577|gb|EHK98571.1| putative Exonuclease 3'-5' domain-containing protein 1 [Glarea
lozoyensis 74030]
Length = 269
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 100/233 (42%), Gaps = 41/233 (17%)
Query: 14 SSDPDGKPIDSVVPIHIVTNA-SQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQL 72
S++ G+ +DS+ + ++ S LP E PS + D EGV L RHG+L I+ L
Sbjct: 5 STESYGELVDSIAKLQVLLGLISTLPIE--RPS------LYIDLEGVALGRHGTLSILSL 56
Query: 73 --AFPDAIYLVDAIQGGETVVK------ACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
A YL+D G + K LES I KV D + DS+AL+ F I
Sbjct: 57 YVAPTKETYLIDIHTLGAVAFTTTNNGISLKSILESGTIPKVFFDIRNDSDALFSLFQIS 116
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD--PRYCGISYQEKEEVRVLLRQDP 182
+ VVD Q+ E RK S FV LA R IS ++ + RV +
Sbjct: 117 VRGVVDLQLM-----ELASRKGSR----KFVSGLAKCIGRDLQISPAQQTQWRVTKERGV 167
Query: 183 QF-----------WTYRPLTELMVRAAADDVRFLPYIY--HNMMKKLNQQSLW 222
Q + RPL ++R DV LP +Y +N K + ++ W
Sbjct: 168 QLFAPETGGRYEVFNERPLKPEIIRYCQQDVALLPILYNVYNAKLKADGEAFW 220
>gi|363734691|ref|XP_001234592.2| PREDICTED: exonuclease 3'-5' domain-containing protein 1 [Gallus
gallus]
Length = 407
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
++Q VI EGV+LC HG L +Q+A ++L D + G + + LE I K
Sbjct: 155 KQQDVISVVGEGVNLCPHGKLSWLQIATKSHVFLFDIFLLGPQAFRNGLQAVLEDKNILK 214
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
V+HDC+ S+ L+ Q+ + L NV DTQ+A
Sbjct: 215 VMHDCRWISDCLFHQYSVLLDNVFDTQVA 243
>gi|351707404|gb|EHB10323.1| Exonuclease 3'-5' domain-containing protein 1 [Heterocephalus
glaber]
Length = 293
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 17/209 (8%)
Query: 3 SSPSHQTHI-PLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL 61
+SP+ + I PL +D P + + V + Q ++Q V+ EG ++
Sbjct: 15 TSPALKAPIAPLLNDLKNSPSEEKEVTYTVIDQFQQKFGAAMLHIKKQSVLSVAAEGPNV 74
Query: 62 CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQF 121
CRHG L +Q+ D +L D + ++ L + + T+VIHDC+ S+ L Q+
Sbjct: 75 CRHGKLYWLQVIH-DCRWLSDCLSHQYGIM------LNNVFDTQVIHDCRWLSDCLSHQY 127
Query: 122 GIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLL-----ADPRYCGISYQEKEEVRV 176
GI L+NV DTQ+A E P+ + L P+Y E+ +
Sbjct: 128 GIMLNNVFDTQVADVFQFSMETGGFLPNCISTLQQSLIRHLNVAPKYLSFL----EDRQK 183
Query: 177 LLRQDPQFWTYRPLTELMVRAAADDVRFL 205
L +++P+ W RPL +++ A +V +L
Sbjct: 184 LTQENPEVWFTRPLPPSLLKMLALEVTYL 212
>gi|290991532|ref|XP_002678389.1| predicted protein [Naegleria gruberi]
gi|284092001|gb|EFC45645.1| predicted protein [Naegleria gruberi]
Length = 839
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 57/96 (59%), Gaps = 13/96 (13%)
Query: 52 IGFDCEGV-DLCRH-GSLCIMQLAFPDA-------IYLVDAIQ-GGETVVKAC--KPALE 99
IG DCEG DL + G+LCI+Q++ + IY++D + GG+ + + LE
Sbjct: 68 IGLDCEGSPDLVKQSGTLCIIQISLINKLHPEILDIYIIDVFKIGGQELSNKTNLRKLLE 127
Query: 100 SSYITKVIHDCKRDSEALYFQF-GIKLHNVVDTQIA 134
S + KVIHD +RDS+ L++Q G KL+ DTQIA
Sbjct: 128 SKTVLKVIHDGRRDSDVLFYQMNGTKLNFTFDTQIA 163
>gi|403368461|gb|EJY84065.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 547
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 24/183 (13%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPD-AIYLVDAIQGGETVVKACKPALESSYITKVIH 108
V+G D E HG LC++Q+ PD YL+D ++ E + ES K+ H
Sbjct: 103 VLGVDLENHQTKSYHGFLCLIQITTPDYQTYLIDCLKLREEIKTYLGAIFESHTTLKIFH 162
Query: 109 DC-KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
C D L FG NV DTQ +Y +K +S + L YC
Sbjct: 163 GCVNSDITWLQRDFGFATVNVFDTQESY--------KKLFKGQRVSLLHLWTT--YC--- 209
Query: 168 YQEKEEVRVLLRQDPQF----WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL-NQQSLW 222
K+ V++ Q F W+ RPL+ M+ AA D +L YI + K NQ L
Sbjct: 210 ---KDRVKISKEQKNMFQKADWSMRPLSSEMLNYAAHDSHYLIYIAKRLQKNFENQNQLQ 266
Query: 223 YLA 225
LA
Sbjct: 267 ELA 269
>gi|345567771|gb|EGX50699.1| hypothetical protein AOL_s00075g125 [Arthrobotrys oligospora ATCC
24927]
Length = 260
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 101/245 (41%), Gaps = 43/245 (17%)
Query: 17 PDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPD 76
P+ +D+ I + ++ +P + PS I D EGVDLCR GS+ I+QL
Sbjct: 4 PESTFVDTSEGISTLLSSIPIPDQTSTPS------IFIDLEGVDLCRTGSISILQLFIST 57
Query: 77 A--IYLVDAIQGGETVVKA---------CKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
IY++D G K LE I V +D + D++ALY F I++
Sbjct: 58 IPHIYIIDIHTLGNIAFTTPSSTNASVTLKSILEDPTIPVVFYDIRSDNDALYHHFSIQI 117
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYIS---FVGLLADPRYCGISYQEKEEVRV-LLRQ- 180
NV+D Q+ Y L D +IS F+ L+ E VR+ ++Q
Sbjct: 118 SNVIDLQL-YELATR--------DGFISSRRFLHGLSKAILANAGLSAAEAVRMDHVKQR 168
Query: 181 -----------DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS-LWYLAVRG 228
+ + RPL + ++ DV++LP + N ++L + W +R
Sbjct: 169 GLQLFAPEKGGSYEVFNRRPLPDELLEYCVQDVQYLPVLLRNFKQRLGRMDRRWMERIRA 228
Query: 229 ALYCR 233
R
Sbjct: 229 ETEAR 233
>gi|169622866|ref|XP_001804841.1| hypothetical protein SNOG_14657 [Phaeosphaeria nodorum SN15]
gi|111056729|gb|EAT77849.1| hypothetical protein SNOG_14657 [Phaeosphaeria nodorum SN15]
Length = 279
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 9/113 (7%)
Query: 44 PSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDA--IYLVD-------AIQGGETVVKAC 94
PS+ +I D EGV L R GS+ I+ + P + I+L+D A + K
Sbjct: 28 PSNPSSPIIYLDLEGVPLSRSGSISILTIFLPSSARIFLIDMHTLGALAFTTPSSQGKTL 87
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRS 147
K LE S ITKV D + DS+ALY +G+ L V D Q+ S E+ +R+
Sbjct: 88 KHVLEDSQITKVFFDVRNDSDALYAHYGVALQCVEDVQLMESAAREKTALRRT 140
>gi|358387264|gb|EHK24859.1| hypothetical protein TRIVIDRAFT_137866, partial [Trichoderma virens
Gv29-8]
Length = 245
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 31/188 (16%)
Query: 55 DCEGVDLCRHGSLCIMQ-LAFP----DAIYLVDAIQGGETVV-------KACKPALESSY 102
D EG +L R+GS+ +M L +P + IY++D G K+ K LE+
Sbjct: 33 DLEGENLGRNGSISLMTVLVYPGEGLEHIYVIDIYTLGRAAFDAVGERGKSLKNILEAPE 92
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE-EQEGRKRSPDDYISFVGLLADP 161
I KV D + DS+AL+F +G+ L V D Q+ S E RK ++S GL
Sbjct: 93 ILKVFFDVRNDSDALFFLYGVNLRGVRDLQLMDSASRPNAENRK-----FVS--GLAKCM 145
Query: 162 RYCGISYQEKEEVRVLLRQDPQFW-----------TYRPLTELMVRAAADDVRFLPYIYH 210
+ ++ +K E + Q + W RPL ++R A DV +LP +Y
Sbjct: 146 EFVPLTGAQKAEWNLCKDQGDRLWNPEKGGSYSVFNTRPLPAEILRYCAGDVAYLPAMYK 205
Query: 211 NMMKKLNQ 218
+ N+
Sbjct: 206 KYASQTNR 213
>gi|346465695|gb|AEO32692.1| hypothetical protein [Amblyomma maculatum]
Length = 636
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 16/203 (7%)
Query: 36 QLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVK-AC 94
QL E+ + IG+ EG + RHG L ++ A +++ D E +
Sbjct: 163 QLSDAIAALKQEQSISIGY--EGTKVGRHGFLSVLVAATSSKVHIFDVFALKEELFSHGL 220
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIA----YSLIEEQEGRKRSPDD 150
K LES I KVIH C+ S++LY Q+ + L NV DT +A Y G+ + PD
Sbjct: 221 KEILESKDIQKVIHGCRHLSDSLYHQYQVSLDNVFDTMVADIILYHNASVDVGQYKFPDF 280
Query: 151 YISFVGLLADP---RYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207
L + Y + Y + ++ W RPL+ + A A DV FL
Sbjct: 281 VRGVQNCLKNILEFNYAQMKYTRSR--KGSQEEEVSTWKLRPLSLQQIDAVAKDVVFLRE 338
Query: 208 IYH----NMMKKLNQQSLWYLAV 226
+ M+KK ++L +
Sbjct: 339 LADVCLGQMLKKFRAGVNFFLTL 361
>gi|170095531|ref|XP_001878986.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646290|gb|EDR10536.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 250
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 31 VTNASQLPAEFL-EPSSERQLVIGFDCEGVDLCRHGSLCIMQL--AFPDAIYLVDAIQGG 87
+T + L A+ L + + R + + D EG+DLCRHG + ++Q+ + + ++LVD G
Sbjct: 13 ITLINDLLADLLPDACNPRAMTLAVDLEGIDLCRHGKISLVQIMSSVSEVVWLVDVTTLG 72
Query: 88 ETVVKACKP-------ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
P LE + I KV +D + D++ALY +G+ L V D Q+
Sbjct: 73 SQAFDHVDPYGRTLRMILEDTGIKKVFYDVRNDADALYNLYGVNLMGVYDLQL 125
>gi|256827062|ref|YP_003151021.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
gi|256583205|gb|ACU94339.1| ribonuclease D [Cryptobacterium curtum DSM 15641]
Length = 399
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 28/183 (15%)
Query: 42 LEPSSERQL---VIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPA 97
LE ++R L V+ D E + + + LC++Q+ D +VD + V A P
Sbjct: 27 LEAFAKRALDSSVLAIDTEFLREKTYYARLCLLQMQTDDETIIVDPFAVSDLGVLA--PL 84
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI--EEQEGRKRSPDDYISFV 155
+SS I K++H ++D E L + G+ + DTQ+A +L+ +Q G Y S V
Sbjct: 85 FQSSSIMKIVHSGRQDLEILNREVGLLPQPLFDTQVAAALLGHTQQIG-------YGSLV 137
Query: 156 GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
+ CG+ + + W+ RPL+ + AADDV +LP +YH M +
Sbjct: 138 SAV-----CGVQLAKMDSF--------TDWSRRPLSASQISYAADDVIYLPQLYHTMTDE 184
Query: 216 LNQ 218
L +
Sbjct: 185 LER 187
>gi|345310822|ref|XP_001520465.2| PREDICTED: exonuclease 3'-5' domain-containing protein 1-like
[Ornithorhynchus anatinus]
Length = 569
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVD-AIQGGETVVKACKPALESSYITK 105
++Q V+ EGV RHG+LC +Q+A +YL D + G + LE + K
Sbjct: 182 KKQSVLSVAAEGVPPSRHGTLCWLQVATTARVYLFDIHLLGHRAFENGLRLVLEDRGVLK 241
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQ 132
V HDC+ S+ L Q+GI L NV DTQ
Sbjct: 242 VTHDCRWLSDCLAHQYGIVLANVFDTQ 268
>gi|347841998|emb|CCD56570.1| similar to 3'-5' exonuclease [Botryotinia fuckeliana]
Length = 283
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 29/185 (15%)
Query: 54 FDCEGVDLCRHGSLCIMQLAF--PDAIYLVD-------AIQGGETVVKACKPALESSYIT 104
D EGVD+ R GS+ I+Q+ +LVD A + K LES +I
Sbjct: 67 IDLEGVDIGRKGSIAILQVYILPTKRTFLVDVHNLRGQAFSTPNSSGLTLKAILESIFIP 126
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
KVI D + DS+ALY FGIKL V+D Q+ E R S ++S +G D
Sbjct: 127 KVIFDVRNDSDALYSHFGIKLQGVIDLQLM-----ELATRSHS-QKFLSGLGRCMDQDL- 179
Query: 165 GISYQEKEEVRVLLRQDP------------QFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ E+ EVR +++ + + RPL +V DV+ +P +++
Sbjct: 180 -VQTPEELEVRSSIKKRGVQLFAPEKGGRYEVFNDRPLDPAIVDYCVQDVQLMPQLWNIY 238
Query: 213 MKKLN 217
KL+
Sbjct: 239 NAKLS 243
>gi|398404123|ref|XP_003853528.1| hypothetical protein MYCGRDRAFT_92372 [Zymoseptoria tritici IPO323]
gi|339473410|gb|EGP88504.1| hypothetical protein MYCGRDRAFT_92372 [Zymoseptoria tritici IPO323]
Length = 257
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 54 FDCEGVDLCRHGSLCIMQ-LAFP-DAIYLVDAIQGGETVV-------KACKPALESSYIT 104
D EG +LC+ G+L I+ L P + +Y++D G + K LE T
Sbjct: 39 LDLEGDNLCKDGTLTIISVLVHPLNHVYIIDIQSLGNSAFHTPTRNGTTFKSVLEDYRTT 98
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
KV D + DS AL+F FGI L + D Q+ + GR + Y++ +G + R
Sbjct: 99 KVFFDVRNDSNALFFLFGITLAGIEDIQLMENASRVDYGRGGTFRAYVAGLGKCIE-RDA 157
Query: 165 GISYQEKEEVRVLLR------------QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
G+S E + + L Q + RPL ++ ADDVR LP +
Sbjct: 158 GLSPCEVTKWKGLKSKMASRFDATRSGQGVHVFAARPLDVEALQYCADDVRVLPRLRETY 217
Query: 213 MKKLN 217
+ +LN
Sbjct: 218 VARLN 222
>gi|154315768|ref|XP_001557206.1| hypothetical protein BC1G_04456 [Botryotinia fuckeliana B05.10]
Length = 307
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 82/184 (44%), Gaps = 29/184 (15%)
Query: 55 DCEGVDLCRHGSLCIMQLAF--PDAIYLVD-------AIQGGETVVKACKPALESSYITK 105
D EGVD+ R GS+ I+Q+ +LVD A + K LES +I K
Sbjct: 92 DLEGVDIGRKGSIAILQVYILPTKRTFLVDVHNLRGQAFSTPNSSGLTLKAILESIFIPK 151
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
VI D + DS+ALY FGIKL V+D Q+ E R S ++S +G D
Sbjct: 152 VIFDVRNDSDALYSHFGIKLQGVIDLQLM-----ELATRSHS-QKFLSGLGRCMDQDL-- 203
Query: 166 ISYQEKEEVRVLLRQDP------------QFWTYRPLTELMVRAAADDVRFLPYIYHNMM 213
+ E+ EVR +++ + + RPL +V DV+ +P ++
Sbjct: 204 VQTPEELEVRSSIKKRGVQLFAPEKGGRYEVFNDRPLDPAIVDYCVQDVQLMPQLWDIYN 263
Query: 214 KKLN 217
KL+
Sbjct: 264 AKLS 267
>gi|170109177|ref|XP_001885796.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164639376|gb|EDR03648.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 250
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 48 RQLVIGFDCEGVDLCRHGSLCIMQL--AFPDAIYLVDAIQGGETVVKACKP-------AL 98
R + + D EG++LCRHG + I+Q+ + + ++LVD G P L
Sbjct: 31 RAITLAVDLEGINLCRHGKISIIQIMSSVSEVVWLVDVTTLGSQAFDHVGPYGRTLRMIL 90
Query: 99 ESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
E + I KV +D + D++ALY +G+ L V D Q+
Sbjct: 91 EDTGIKKVFYDVRNDADALYNLYGVNLTGVYDLQL 125
>gi|389745398|gb|EIM86579.1| hypothetical protein STEHIDRAFT_156887 [Stereum hirsutum FP-91666
SS1]
Length = 325
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 45/213 (21%)
Query: 51 VIGFDCEGVDLC-RHGSLCIM------QLAFPDAIYLVDAIQGGETVVKACKPALESSYI 103
I DCEG DL + G+L I+ A +L+D ++ T +++ L S +I
Sbjct: 26 TIILDCEGRDLGEKGGALSIIILSTTSTTASTALTFLIDVLRLSPTQLQSIYDLLSSPHI 85
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIA----YSLIEEQEGRK-------------- 145
TKV+ D + D ALY + G+++HNV+D Q+A L EQE ++
Sbjct: 86 TKVVFDGRMDYSALYHECGVEVHNVLDMQLADIASRGLRGEQEAKRLERLWKYLGKWEVE 145
Query: 146 RSPDDYISFVGL------LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
+ D Y V + L++ G++ E +R D WT RPL + AA
Sbjct: 146 KKKDMYEKVVKINGMKDCLSEHEIFGMTKDES------VRHD--LWTRRPLPKNYASYAA 197
Query: 200 DDVRFLPYIYHNMMKK------LNQQSLWYLAV 226
D R + +Y +K L+ QS+ Y+ +
Sbjct: 198 TDARMIHALYDLFTQKSFITSDLSAQSMRYVTI 230
>gi|402580291|gb|EJW74241.1| 3'-5' exonuclease [Wuchereria bancrofti]
Length = 256
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Query: 51 VIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKA-CKPALESSYITKVI 107
V+G D + V L G L ++ LA I + D + ++++ K LES I KVI
Sbjct: 5 VVGVDFKTVTLGVQGEEFLSLVVLATTMQIVVFDVVHSDTILLESGVKEILESEKIIKVI 64
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE-EQEGRKRSPDDYISFVGLLADPRYCGI 166
HD KR + L ++ I L + DTQ+A+++++ E+ G+ + +SFV L Y
Sbjct: 65 HDAKRVATLLAHRYAINLRKIFDTQVAHTILQHEKFGKAVTDMRTMSFVNL--RRVYYPQ 122
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYL 224
S + L P W RP+TE + ++ L + + MM + + L L
Sbjct: 123 SIMMSDATPRKLTHLPS-WGLRPITEDFLVTVVEEAHCLVTVLYRMMSTMLPKHLLAL 179
>gi|407408126|gb|EKF31676.1| hypothetical protein MOQ_004473 [Trypanosoma cruzi marinkellei]
Length = 387
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 14/158 (8%)
Query: 65 GSLCIMQLAFPDA---IYLVDAIQ-GGETVVKACKPALESSYITKVIHDCKRDSEALYFQ 120
G + ++Q A DA ++L D + T VK+ +P L + I K++ DC+RD EAL Q
Sbjct: 91 GRISLLQ-ACSDAKPVVFLFDVLTLTAPTFVKSVEPLLRNRGIRKLLFDCRRDVEALSSQ 149
Query: 121 FGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKE---EVRVL 177
G+K V+D Q+ ++ I + + RS + +L G++ Q+ + + +
Sbjct: 150 LGLKPEGVLDLQVFFTAI---QWKLRSVNRRSGMTYVLKS--VAGLTRQDGDSAVQAAMT 204
Query: 178 LRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
L P W RPL + + AADDVR + + +N+++K
Sbjct: 205 LGNRP-VWDIRPLPDHFLEYAADDVRHILLLANNLVEK 241
>gi|257791482|ref|YP_003182088.1| ribonuclease D [Eggerthella lenta DSM 2243]
gi|317490632|ref|ZP_07949102.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
gi|325831419|ref|ZP_08164673.1| ribonuclease D [Eggerthella sp. HGA1]
gi|257475379|gb|ACV55699.1| ribonuclease D [Eggerthella lenta DSM 2243]
gi|316910256|gb|EFV31895.1| ribonuclease D [Eggerthella sp. 1_3_56FAA]
gi|325486673|gb|EGC89121.1| ribonuclease D [Eggerthella sp. HGA1]
Length = 381
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 40 EFLEPSSERQL---VIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACK 95
E L +ER + V+ D E + + + LC++QLA D +VD + +K
Sbjct: 7 ENLAAFAERAMHSSVLAIDTEFLREKTYYAKLCLIQLATDDETAIVDPFAVDD--LKVLA 64
Query: 96 PALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV 155
P L + + K+ H +D E L + G+ H + DTQ+A +L+ + I +
Sbjct: 65 PVLRNENVMKLFHAGNQDLEILLREVGVLPHPLFDTQVAAALLGHTQ--------QIGYA 116
Query: 156 GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
L+ CG++ ++ + W+ RPL++ + AADDV +LP +Y M +
Sbjct: 117 ALVHAE--CGVTLKKIDSF--------TDWSRRPLSDSQLEYAADDVVYLPRMYERMRAQ 166
Query: 216 L 216
L
Sbjct: 167 L 167
>gi|308234516|ref|ZP_07665253.1| ribonuclease D [Atopobium vaginae DSM 15829]
gi|328944110|ref|ZP_08241575.1| ribonuclease D [Atopobium vaginae DSM 15829]
gi|327492079|gb|EGF23853.1| ribonuclease D [Atopobium vaginae DSM 15829]
Length = 376
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 22/161 (13%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
LC++QLA I LVD + + + CK L+ ITK+ H C +D E +Y F
Sbjct: 37 KLCLIQLATRSEIVLVDPLSIPD-LTDLCKLFLDKK-ITKIFHACSQDLELIYDIFSCLP 94
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185
V DTQ+A + + + + G L D C + + E + W
Sbjct: 95 KPVFDTQVAAAFLGHR---------FQIGYGPLVDA-LCHVHLPKAESL--------TDW 136
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS--LWYL 224
T RPL E + AADDVR+LP +Y ++ +L ++ W+L
Sbjct: 137 TRRPLAEEQLEYAADDVRYLPRMYDTLLHELKEKERYAWFL 177
>gi|154277567|ref|XP_001539624.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413209|gb|EDN08592.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 272
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 55 DCEGVDLCRHGSLCIMQLAFPDA--IYLVDAIQGGE-------TVVKACKPALESSYITK 105
D EG+ L R GS+ I+QL A +YL+D GE T K+ K LE K
Sbjct: 33 DLEGIKLSREGSISILQLLNHHAEHVYLIDIYLLGEEAFTTTGTNGKSLKSILECPATPK 92
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLA------ 159
V D + DS AL+F FGI+L V D Q+ E+ + P FV LA
Sbjct: 93 VFFDVRNDSNALFFHFGIRLQGVEDLQL------EESACRPGPLSRKKFVSGLARCIEID 146
Query: 160 ---DPRYCGISYQEKEEVRVLLRQDP----QFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
P + + K++ L + + + RP+ + ++ DV F+P++
Sbjct: 147 LRISPSARRVWKESKDKGMRLFAPERGGSHEVFNLRPIPQSIIDYCVQDVSFMPHLRTLY 206
Query: 213 MKKLN 217
KL+
Sbjct: 207 WSKLS 211
>gi|339444858|ref|YP_004710862.1| ribonuclease D [Eggerthella sp. YY7918]
gi|338904610|dbj|BAK44461.1| ribonuclease D [Eggerthella sp. YY7918]
Length = 381
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 24/174 (13%)
Query: 51 VIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E + + + LC++QLA D + +VD + + A P L++ + K+ H
Sbjct: 21 VLAIDTEFMREKTYYAKLCLIQLATDDEVAIVDPFALDD--LGALAPVLQNEQVMKLFHA 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
++D E + + G+ + DTQ+A +L+ + I + L+ CG++ +
Sbjct: 79 GRQDLEIILREVGVLPKPLFDTQVAAALLGHTQ--------QIGYAALVHAE--CGVTLK 128
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---MKKLNQQS 220
+ + W+ RPL+E + AADDV +LP +Y M + KLN+ S
Sbjct: 129 KIDSF--------TDWSRRPLSESQLEYAADDVVYLPRMYERMRGQLMKLNRLS 174
>gi|344923288|ref|ZP_08776749.1| ribonuclease D [Candidatus Odyssella thessalonicensis L13]
Length = 356
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 40 EFLEPSSERQLVIGFDCEGV-----DLCRHGS----LCIMQLAFPDAIYLVDAIQGGETV 90
+ L P RQ F G + CR S L ++QL+ L+D ++ G
Sbjct: 4 KLLNPDEIRQYCDYFSQSGTLAIDTEFCRTNSYWPKLALIQLSDGQETVLIDPLEEG-VN 62
Query: 91 VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDD 150
++ + L I K+ H C++D E L FG N+ DTQ+AY+ + P +
Sbjct: 63 LEPVRNLLAQKDIVKIFHSCRQDLEILLKVFGEIPENIFDTQLAYNFL--------YPTE 114
Query: 151 YISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ--FWTYRPLTELMVRAAADDVRFLPYI 208
IS +L +E+++V L + Q W RPL+ + AA+DV +LP +
Sbjct: 115 EISLARML------------EEQLKVNLNKSKQNTNWIRRPLSVAQLTYAANDVIYLPEM 162
Query: 209 YHNMMKKL 216
+ ++ L
Sbjct: 163 HQKLLTSL 170
>gi|156059756|ref|XP_001595801.1| hypothetical protein SS1G_03891 [Sclerotinia sclerotiorum 1980]
gi|154701677|gb|EDO01416.1| hypothetical protein SS1G_03891 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 268
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 34/214 (15%)
Query: 54 FDCEGVDLCRHGSLCIMQLAF--PDAIYLVDAIQGGETVVKA-------CKPALESSYIT 104
D EG+ + R+GS+ I+Q+ F +LVD E K LES I
Sbjct: 52 IDLEGIKIGRNGSISILQVYFLPTKESFLVDVHTLRERTFSTPNKSGVTLKSILESQLIP 111
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
KVI D + DS+ALY FGIKL V+D Q+ + + D++ +G +
Sbjct: 112 KVIFDVRNDSDALYSHFGIKLGGVIDLQLM------ELATRFYSRDFLCGLGKCMENDL- 164
Query: 165 GISYQEKEEVRVLLRQDP------------QFWTYRPLTELMVRAAADDVRFLP---YIY 209
+ E+ +VR ++Q + + RPL +V DV+ LP +Y
Sbjct: 165 -VQTPEELKVRGAIKQRGIEIFAPEKGGSYEVFNDRPLDPAIVDYCIQDVQLLPELWEVY 223
Query: 210 HNMMKKLNQQSLWYLAVRGALYCRCFCINENDYV 243
+ + KL+++ W + R DY+
Sbjct: 224 NAKLSKLHKR--WAAKIEQETKARILSSQSADYI 255
>gi|225561048|gb|EEH09329.1| 3'-5' exonuclease [Ajellomyces capsulatus G186AR]
Length = 281
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 55 DCEGVDLCRHGSLCIMQLAF--PDAIYLVDAIQGGE-------TVVKACKPALESSYITK 105
D EG+ L R GS+ I+QL + +YL+D GE T K+ K LE K
Sbjct: 42 DLEGIKLSREGSISILQLLNHPEEHVYLIDIHLLGEEAFTTPGTNGKSLKSILECPVTPK 101
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLA------ 159
V D + DS AL+F FGI+L V D Q+ E+ + P FV LA
Sbjct: 102 VFFDVRNDSNALFFHFGIRLQGVEDLQL------EESACRPGPLSRKKFVSGLARCIEID 155
Query: 160 ---DPRYCGISYQEKEEVRVLLRQD----PQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
P + + K++ L + + + RP+ + ++ DV F+P++
Sbjct: 156 LRISPSAKRVWKESKDKGMRLFAPECGGSHEVFNLRPIPQSIIDYCVQDVSFMPHLRTLY 215
Query: 213 MKKLN 217
KL+
Sbjct: 216 WSKLS 220
>gi|346310745|ref|ZP_08852758.1| ribonuclease D [Collinsella tanakaei YIT 12063]
gi|345897238|gb|EGX67165.1| ribonuclease D [Collinsella tanakaei YIT 12063]
Length = 377
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 22/163 (13%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
H LC++Q+A PD ++D I A + KV H C +D E L + G
Sbjct: 35 HPRLCLVQVATPDECVVIDVIAIDNLAPLAI--LMRDEGTVKVFHACSQDMEVLNYTLGA 92
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ DTQ+A + + E+ S+ G++ +CG++ + E +
Sbjct: 93 LPAPIFDTQVAAAFLGERMQ--------ASYNGMVH--AFCGVTLPKSESL--------T 134
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ--QSLWYL 224
W+ RPLT + A DDVR+L Y +M++L++ ++ W L
Sbjct: 135 DWSRRPLTPEQIEYALDDVRYLIKAYDVIMERLDKSGRASWVL 177
>gi|440638468|gb|ELR08387.1| hypothetical protein GMDG_03176 [Geomyces destructans 20631-21]
Length = 312
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 55 DCEGVDLCRHGSLCIMQLAFPDAI-----YLVD-------AIQGGETVVKACKPALESSY 102
D EGVDLCR GSL I+ L I YL D A K K L+
Sbjct: 39 DLEGVDLCREGSLSILTLMIDTGIPTRRVYLFDVHLLGTHAFNTAGVKQKTLKDILQDDK 98
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYS 136
I KVI D + DS+AL+ FG++L V D Q+ S
Sbjct: 99 IPKVIFDVRNDSDALFTHFGVRLQGVEDVQLMES 132
>gi|158523201|ref|YP_001531071.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
gi|158512027|gb|ABW68994.1| 3'-5' exonuclease [Desulfococcus oleovorans Hxd3]
Length = 382
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 24/174 (13%)
Query: 47 ERQLVIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYIT 104
ER V+ D E D H + +C++Q+ +L+D + + + + KP +
Sbjct: 26 ERVPVVAVDLEA-DSLHHFTEKVCLIQIGVNGDAFLIDPLALSD--LSSLKPFFADPGVI 82
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
KV+H D +LY FGI + + D++IA + Q +D ++ R
Sbjct: 83 KVLHGADYDVRSLYRDFGITITGLFDSEIASRFLGVQST---GLNDVVN--------RRF 131
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
G++ + +QD WT RPL E M+ AA DVR+L +YH + +L Q
Sbjct: 132 GVTMDKG-----CRKQD---WTQRPLPEKMLSYAALDVRYLVDLYHQLQNELQQ 177
>gi|449670884|ref|XP_004207375.1| PREDICTED: uncharacterized protein LOC101237408, partial [Hydra
magnipapillata]
Length = 965
Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 5/169 (2%)
Query: 49 QLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIH 108
Q V+ EG + R G + ++ +A + +Y++D ++ + + K +E++ + KV+H
Sbjct: 97 QKVLSIIAEGQAVNRFGHISLLTVASREMVYIID-LEAFDGFPNSLKDLIENANVLKVVH 155
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
D + S+ LY +GI N+ DTQ+A + I+ Q PD+ S + Y GI
Sbjct: 156 DVRMTSDCLYHIYGICPKNIFDTQVADAFIKRQM-FGEFPDEVTSLAKCVET--YLGICP 212
Query: 169 QEKE-EVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
E + ++++ W RPL + + A+ +L + MM+KL
Sbjct: 213 CTFETDKSSIIQKTRNVWEKRPLHKDFLSVCAEACMYLRELRPIMMEKL 261
>gi|340056462|emb|CCC50794.1| predicted zinc finger protein [Trypanosoma vivax Y486]
Length = 391
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 88 ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ--EGRK 145
E VK +P L +S + K++ DC+RD EAL Q G+KL V+D Q+ ++ I+ + +
Sbjct: 121 EVFVKTTQPLLGNSGVRKILFDCRRDVEALSCQLGVKLEGVLDLQLFFTAIQWKLRSVNR 180
Query: 146 RSPDDYISFVGLLADPRYCGISYQEKE---EVRVLLRQDPQFWTYRPLTELMVRAAADDV 202
RS Y+ G++ QE + + + L P W RPL + + AA DV
Sbjct: 181 RSGMGYVL-------KNVAGLTRQEADSAVQAAMTLGNRP-VWDVRPLPDHFLEYAAGDV 232
Query: 203 RFLPYIYHNMM 213
R + + ++++
Sbjct: 233 RHILLLANHLV 243
>gi|303271551|ref|XP_003055137.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463111|gb|EEH60389.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 516
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 29/110 (26%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVVKAC--------------- 94
VI DCEGV + R G + ++Q+A P+ +YL D G +AC
Sbjct: 256 VIAVDCEGVAMSRIGRVTLVQIAVPNERVYLFDVQALGS---EACFERGGGGGGGEEKDE 312
Query: 95 ----------KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
K LE + ITK++ DC+ DS+ALY Q GI L+ V D Q+A
Sbjct: 313 NNATNRSVTLKSVLEDASITKLMFDCRVDSDALYHQHGIALNGVFDIQLA 362
>gi|325096537|gb|EGC49847.1| 3'-5' exonuclease [Ajellomyces capsulatus H88]
Length = 272
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 55 DCEGVDLCRHGSLCIMQLAF--PDAIYLVDAIQGGE-------TVVKACKPALESSYITK 105
D EG+ L R GS+ I+QL + +YL+D GE T K+ K LE K
Sbjct: 33 DLEGIKLSREGSISILQLLNHPEEHVYLIDIHLLGEEAFTTTGTNGKSLKSILECPVTPK 92
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLA------ 159
V D + DS AL+F FGI+L V D Q+ E+ + P FV LA
Sbjct: 93 VFFDVRNDSNALFFHFGIRLQGVEDLQL------EESACRPGPLSRKKFVSGLARCIEID 146
Query: 160 ---DPRYCGISYQEKEEVRVLLRQDP----QFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
P + + K++ L + + + RP+ + ++ DV F+P++
Sbjct: 147 LRISPSAKRVWKESKDKGMRLFAPERGGSHEVFNLRPIPQSIIDYCVQDVSFMPHLRTLY 206
Query: 213 MKKLN 217
KL+
Sbjct: 207 WSKLS 211
>gi|240280394|gb|EER43898.1| 3'-5' exonuclease [Ajellomyces capsulatus H143]
Length = 272
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 28/185 (15%)
Query: 55 DCEGVDLCRHGSLCIMQLAF--PDAIYLVDAIQGGE-------TVVKACKPALESSYITK 105
D EG+ L R GS+ I+QL + +YL+D GE T K+ K LE K
Sbjct: 33 DLEGIKLSREGSISILQLLNHPEEHVYLIDIHLLGEEAFTTTGTNGKSLKSILECPVTPK 92
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLA------ 159
V D + DS AL+F FGI+L V D Q+ E+ + P FV LA
Sbjct: 93 VFFDVRNDSNALFFHFGIRLQGVEDLQL------EESACRPGPLSRKKFVSGLARCIEID 146
Query: 160 ---DPRYCGISYQEKEEVRVLLRQDP----QFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
P + + K++ L + + + RP+ + ++ DV F+P++
Sbjct: 147 LRISPSAKRVWKESKDKGMRLFAPERGGSHEVFNLRPIPQSIIDYCVQDVSFMPHLRTLY 206
Query: 213 MKKLN 217
KL+
Sbjct: 207 WSKLS 211
>gi|168698136|ref|ZP_02730413.1| ribonuclease D [Gemmata obscuriglobus UQM 2246]
Length = 435
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 40/214 (18%)
Query: 13 LSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCE--GVDLCRHGSLCIM 70
++ P +P +P +VT+ +QL A + + ++GFD E G D R LC++
Sbjct: 1 MARRPGKRP---ALPEQLVTHPAQLAACLSHLA--KAPLVGFDTEFVGEDAYRP-ELCLV 54
Query: 71 QLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVD 130
Q++ + ++++D + G + L T V+H + D YFQ G NV D
Sbjct: 55 QVSTAEQLFVIDPFECGS--LDGFWDLLLDRKRTVVVHAGREDVRMCYFQAGSAPPNVFD 112
Query: 131 TQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF------ 184
QIA L VGL Y G+ + LLRQ Q
Sbjct: 113 VQIAAGL-----------------VGLTYPIGYAGLVHD-------LLRQRMQKGETLTD 148
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPLT VR A DDVR+L + + ++L +
Sbjct: 149 WRQRPLTPAQVRYAYDDVRYLLPAHRKLTERLKK 182
>gi|350559619|ref|ZP_08928459.1| ribonuclease D [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349781887|gb|EGZ36170.1| ribonuclease D [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 381
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD I VD + G + A L+ S + KV H +D E LY G
Sbjct: 42 LCLIQLATPDHIACVDPLALGG--IGALDELLQDSSVLKVFHAASQDLEVLYLVTGKVPS 99
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
V DTQ+A SL+ E + + L+ + ++E ++ Q W
Sbjct: 100 PVFDTQVAASLLGHGE--------QVGYANLVE-----AVLHRELDKT-----QSRTDWA 141
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
RPL + A DDVRFL ++ + K+L
Sbjct: 142 RRPLQPAQLEYARDDVRFLTELFLQLQKELE 172
>gi|389745397|gb|EIM86578.1| hypothetical protein STEHIDRAFT_111056 [Stereum hirsutum FP-91666
SS1]
Length = 369
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 92/208 (44%), Gaps = 36/208 (17%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAF-----PDAIYLVDAIQGGETVVKACKPALESSYIT 104
I DCEG++L R G+L I+ L P +L+D +Q ++ ++ L S +IT
Sbjct: 26 TIILDCEGLNLGARGGTLSIIILRTTTTTSPARTFLLDVLQLSQSQLQPVYALLSSPFIT 85
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIA--YSLIEEQEGRKRSPDDYISFVGLL---- 158
K++ D + D ALY + GI+L NV+D Q+A S EG R + SF+G
Sbjct: 86 KLVFDGRMDYSALYHECGIELRNVLDLQLADVVSRGLRGEGEGRRMERLGSFLGRWEVEG 145
Query: 159 ADPRYCGIS--------------YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
RY G+ Y+ +++ V R D W RPL AA D
Sbjct: 146 KKERYGGVHKLNGMKDCLWEHEIYELEKDGSV--RHD--LWLCRPLPRYYAGYAATDAEM 201
Query: 205 LPYIYHNMMK------KLNQQSLWYLAV 226
+ +Y ++ L QS+ Y+ +
Sbjct: 202 IHALYDIFIEGSFITSNLPAQSMRYITI 229
>gi|402075969|gb|EJT71392.1| hypothetical protein GGTG_10651 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 277
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 25/209 (11%)
Query: 30 IVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQ-LAFP-DAIYLVDAIQGG 87
IV++A +L FL + R + D EG DL R G+L I+ L P L+D + G
Sbjct: 10 IVSSAKRLQI-FLSSITPRS-TLYLDIEGKDLGRRGTLNIITALIHPRKQASLIDVQKLG 67
Query: 88 ETVVKACKPA-------LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEE 140
+ A LE + K D + D+ AL+ ++L V+D Q+ E
Sbjct: 68 KAAFTTANGAGATLKSILEDQSVPKYFWDVRTDAVALWAHHQVRLAGVMDVQLL-----E 122
Query: 141 QEGRKRSPDDYISFVGL-------LADPR-YCGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
+ R+R + F+GL L PR G Q K+ L R ++ RPL +
Sbjct: 123 KAARRRGGSN-TDFIGLRNAVKNDLDLPRALLGSWLQNKQHAAALFRARQDIFSLRPLRK 181
Query: 193 LMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
+ R DDV LP + + +L+ Q L
Sbjct: 182 KVKRYCVDDVEHLPALAERYVDRLDAQGL 210
>gi|218779802|ref|YP_002431120.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
gi|218761186|gb|ACL03652.1| 3'-5' exonuclease [Desulfatibacillum alkenivorans AK-01]
Length = 388
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 23/166 (13%)
Query: 42 LEPSSERQLVIGFDCEGVDLCRHG-SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALES 100
L S + Q I D E + + C++Q+ Y+VD + + VKA P LE+
Sbjct: 27 LTQSLQSQKCIAVDLEADSMFHYQEKACLLQITSNGLNYIVDPL--CDCDVKALAPILEN 84
Query: 101 SYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD 160
I K+ H D L+ FGI+LHN+ DTQ+A + E + + + L +
Sbjct: 85 DEIQKIFHGADYDVRCLFRDFGIELHNLFDTQVAARFLGEPQ----------TGLAPLLE 134
Query: 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPL-TELMVRAAADDVRFL 205
R+ G+ ++K + + W+ RPL E+M AA D V L
Sbjct: 135 SRF-GVQLEKKYQKKN--------WSLRPLPPEMMAYAANDTVHLL 171
>gi|428186343|gb|EKX55193.1| hypothetical protein GUITHDRAFT_62690 [Guillardia theta CCMP2712]
Length = 301
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 17/168 (10%)
Query: 42 LEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFP-----DAIYLVDAIQG-GETVVKACK 95
L+ E ++ +DCEGV+L R GS+ ++Q A +L+D + + + K
Sbjct: 35 LKKELEHVKLLAWDCEGVNLSRIGSVTLIQFAIDREDGGQLCFLLDMLSPIKDQLFAFAK 94
Query: 96 PALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV 155
LE + KVIHD D++ L GI + NV DTQ + + R P+ ++
Sbjct: 95 QVLEDESVLKVIHDPAADADCLLHCHGITVVNVHDTQAWHMTLRRCYSR---PNLNLTLE 151
Query: 156 GL-LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDV 202
L + S+ + +P +W RPLTE M++ A DV
Sbjct: 152 AWNLPLNTHKNASFNP-------YKSNPAYWASRPLTETMIQVAGGDV 192
>gi|430761955|ref|YP_007217812.1| Ribonuclease D [Thioalkalivibrio nitratireducens DSM 14787]
gi|430011579|gb|AGA34331.1| Ribonuclease D [Thioalkalivibrio nitratireducens DSM 14787]
Length = 382
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD I VD + G + L+ S + KV H +D E LY G
Sbjct: 42 LCLIQLATPDHIACVDPLALGG--IGQLDQLLQDSAVLKVFHAASQDLEVLYLVTGKVAS 99
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
V DTQ+A SL+ E + + L+ + ++E ++ Q W
Sbjct: 100 PVFDTQVAASLLGHGE--------QVGYANLVE-----AVLHRELDKT-----QSRTDWA 141
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
RPL + A DDVRFL ++ + K+L+
Sbjct: 142 RRPLQPAQLEYARDDVRFLTELFVQLQKELD 172
>gi|357404370|ref|YP_004916294.1| ribonuclease D [Methylomicrobium alcaliphilum 20Z]
gi|351717035|emb|CCE22700.1| Ribonuclease D [Methylomicrobium alcaliphilum 20Z]
Length = 386
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
C++Q+A P+ + VD I + + A + + I KV H C++D E Y G
Sbjct: 41 KFCLLQIATPEWVACVDPIALDD--LGALFEVIYNPKIIKVFHSCRQDLEIFYQLTGKIP 98
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGI--SYQEKEEVRVLLRQDPQ 183
+ DTQIA L+ QE +P Y + S+ + R D
Sbjct: 99 QPIFDTQIAAPLLGYQE-----------------NPGYAMLVSSFLNINLSKAHTRTD-- 139
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
WT RPL++ ++ AADDV +L IY M+KKL
Sbjct: 140 -WTVRPLSQAQLQYAADDVIYLCQIYQTMLKKL 171
>gi|322712295|gb|EFZ03868.1| 3'-5' exonuclease [Metarhizium anisopliae ARSEF 23]
Length = 281
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 32/217 (14%)
Query: 22 IDSVVPI-HIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQL-AFP-DAI 78
ID+ I ++ N LP E P S + FD EG +L RHG++ I+QL P +A
Sbjct: 34 IDTAGAISELMNNIEDLPKE---PPS-----LYFDIEGDNLSRHGTIAILQLYVMPINAT 85
Query: 79 YLVDAIQGGETVV-------KACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDT 131
YL+D G+ + K LE S I KV D + DS+AL+ F IKL + D
Sbjct: 86 YLIDVYTLGDKCFSTPGGNGRTLKDILEFSSIPKVFFDVRNDSDALHGHFKIKLAGIQDL 145
Query: 132 QIAYSLIEEQEGRKRSPDDYISFV----GLLADPRYCGISYQEKEEVRVLLRQDPQFWTY 187
Q+ + + KR + + D + + + E ++ +LL + +Y
Sbjct: 146 QLME--LATRSFSKRCVNGLSKCIERDGSFTIDEK---LVWMETKKKGLLLFAPEEGGSY 200
Query: 188 -----RPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
RPL + +V A DV+ LP ++ +KL+++
Sbjct: 201 DIFKQRPLPKDIVLYCAQDVQILPRLWSYYNRKLSKK 237
>gi|71662929|ref|XP_818464.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70883717|gb|EAN96613.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 387
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 14/158 (8%)
Query: 65 GSLCIMQLAFPDA---IYLVDAIQ-GGETVVKACKPALESSYITKVIHDCKRDSEALYFQ 120
G + ++Q A DA ++L D + T VK+ +P L + I K++ DC+RD EAL Q
Sbjct: 91 GRISLLQ-ACSDAKPVVFLFDVLTLTAPTFVKSVEPFLRNRGIRKLLFDCRRDVEALSSQ 149
Query: 121 FGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKE---EVRVL 177
G+K V+D Q+ ++ I + + RS + +L G++ Q+ + + +
Sbjct: 150 LGLKPEGVLDLQVFFTAI---QWKLRSVNRRSGMTYVLKS--VAGLTRQDGDSAVQAAMT 204
Query: 178 LRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
L P W RPL + + AADDVR + + +++++K
Sbjct: 205 LGNRP-VWDIRPLPDHFLEYAADDVRHILLLANHLVEK 241
>gi|328955332|ref|YP_004372665.1| ribonuclease D [Coriobacterium glomerans PW2]
gi|328455656|gb|AEB06850.1| ribonuclease D [Coriobacterium glomerans PW2]
Length = 377
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 20/156 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
H LC++Q+A P+ LVD ++ + A A E + K+ H C +D E L +
Sbjct: 35 HPRLCLVQVATPEVSALVDPLEIEDLSPLAALMADEGT--RKIFHACSQDMEVLLNALDV 92
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ + DTQ+A + + E+ +S+ GL+ +CG+S + +
Sbjct: 93 LPNPIFDTQVAAAFLGERV--------QMSYDGLV--KAFCGVSLPKTASL--------T 134
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W++RPLT + A DDVR+L Y M ++L Q+
Sbjct: 135 DWSHRPLTAEQMDYAEDDVRYLICAYEVMAERLEQR 170
>gi|258570519|ref|XP_002544063.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904333|gb|EEP78734.1| predicted protein [Uncinocarpus reesii 1704]
Length = 448
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 34/186 (18%)
Query: 55 DCEGVDLCRHGSLCIMQLAF--PDAIYLVD-----------AIQGGETVVKACKPALESS 101
D EGV+LCR GS+ I+QL D +YL+D + + G+T+ K ES
Sbjct: 235 DFEGVNLCRLGSISIIQLLVQPEDHVYLIDVHVLGPLAFTTSGKNGDTL----KTIFESP 290
Query: 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADP 161
I K I D + DS ALYF +G+ L V D Q+ + +R Y+S + D
Sbjct: 291 EILKGIFDVRNDSNALYFLYGVALQGVEDIQLM------EVACRRGLQTYLSGLARCIDL 344
Query: 162 RYCGISYQE-------KEEVRVLLRQDP----QFWTYRPLTELMVRAAADDVRFLPYIYH 210
+ + E KE+ L R + + + RP+ E + DV++LP +
Sbjct: 345 DLISLGFGEKRVWKAAKEKGGRLFRPEAGGSFEVFNTRPMLEDIRAYCVCDVQYLPKLRD 404
Query: 211 NMMKKL 216
+L
Sbjct: 405 RYWNRL 410
>gi|170588753|ref|XP_001899138.1| 3'-5' exonuclease family protein [Brugia malayi]
gi|158593351|gb|EDP31946.1| 3'-5' exonuclease family protein [Brugia malayi]
Length = 573
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 7/186 (3%)
Query: 43 EPSSERQLVIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKA-CKPALE 99
E S + VIG D + V L G L ++ LA I + D + ++++ K LE
Sbjct: 314 EIDSMEERVIGVDFKTVTLGVQGEEFLSLVVLATTMQIVVFDVVHSDTILLESGVKEILE 373
Query: 100 SSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE-EQEGRKRSPDDYISFVGLL 158
S I KVIHD KR + L ++ I L + DTQ+A+++++ E+ G+ S +SFV L
Sbjct: 374 SEKIIKVIHDAKRVATLLAHRYAINLRKIFDTQVAHAILQYEKFGKAVSDMRTMSFVNL- 432
Query: 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
Y S + L P W RP+TE + ++ L + + M+ +
Sbjct: 433 -RRVYYPQSIMMSDVTPRKLTHLPS-WGLRPITEDFLVTVVEEAHCLVTVLYRMISAMLP 490
Query: 219 QSLWYL 224
+ L L
Sbjct: 491 KHLLAL 496
>gi|71416479|ref|XP_810270.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70874777|gb|EAN88419.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 387
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 34/168 (20%)
Query: 65 GSLCIMQLAFPDA---IYLVDAIQ-GGETVVKACKPALESSYITKVIHDCKRDSEALYFQ 120
G + ++Q A DA ++L D + T VK+ +P L + I K++ DC+RD EAL Q
Sbjct: 91 GRISLLQ-ACSDAKPVVFLFDVLTLTAPTFVKSVEPFLRNRGIRKLLFDCRRDVEALSSQ 149
Query: 121 FGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQ 180
G+K V+D Q+ ++ I+ + L + R G++Y K V L RQ
Sbjct: 150 LGLKPEGVLDLQVFFTAIQWK---------------LRSVNRRSGMTYVLK-SVAGLTRQ 193
Query: 181 DPQ-------------FWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
D W RPL + + AADDVR + + +++++K
Sbjct: 194 DGDSAVQAAMALGNRPVWDIRPLPDHFLEYAADDVRHILLLANHLVEK 241
>gi|393910053|gb|EFO23245.2| 3'-5' exonuclease [Loa loa]
Length = 573
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 51 VIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKA-CKPALESSYITKVI 107
V+G D + V L G L ++ LA I + D + ++++ K LES I KVI
Sbjct: 321 VVGVDFKTVILGVQGEEFLSLIVLATTTQIVVFDVVHSDTILLESGVKEILESEKIIKVI 380
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE-EQEGRKRSPDDYISFVGLLADPRYCGI 166
HD KR + L ++ I L + DTQ+A+++++ E+ G+ + +SF L Y
Sbjct: 381 HDAKRVATLLAHRYAINLRKIFDTQVAHAILQHEKFGKALTDMHTVSFRNL--QRIYYPQ 438
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMM 213
S + L P W RP+TE + ++ L + + MM
Sbjct: 439 SIMMSDTTPRKLSHSPS-WGLRPITEDFLVTVVEEAHCLVTVLYRMM 484
>gi|322705302|gb|EFY96889.1| 3'-5' exonuclease [Metarhizium anisopliae ARSEF 23]
Length = 281
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 30/202 (14%)
Query: 55 DCEGVDLCRHGSLCIM--QLAFPDAIYLVDAIQGGETVVKAC-------KPALESSYITK 105
D EG+ L R GS+ ++ +A Y++D + GE A K LES I K
Sbjct: 39 DLEGIKLGRSGSVSLLSVHVAPTAKTYIIDIFKLGEEAFTATSTSGISLKNILESENIPK 98
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY-C 164
V D + DS AL+ +GI++ + D Q+ E R+ P +I+ GL +Y C
Sbjct: 99 VFFDIRNDSNALFSHYGIRVGGIRDLQVM-----EFATRRGPPARFIT--GLANCIKYDC 151
Query: 165 GISYQEKEEV-----RVLLRQDP------QFWTYRPLTELMVRAAADDVRFLPYIYHNMM 213
++ +K+ R DP + + RPL + +A DV LP ++
Sbjct: 152 PMTESQKQSWLQMKDRAGRLYDPNKGGGYEVFNERPLRREICEYSAQDVALLPKLWEAYS 211
Query: 214 KKLNQ--QSLWYLAVRGALYCR 233
KL+ ++ W + V A R
Sbjct: 212 TKLSHSNKAFWQMMVDDATLKR 233
>gi|289207511|ref|YP_003459577.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
gi|288943142|gb|ADC70841.1| ribonuclease D [Thioalkalivibrio sp. K90mix]
Length = 392
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 25/153 (16%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q A D + +D ++ ++ P ITKV H +D E LY + G
Sbjct: 42 LCLVQAATLDQLACIDPLR---LDIQQLAPLFRDPGITKVFHAASQDMELLYRELGFVPS 98
Query: 127 NVVDTQIAYSLI--EEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
V DTQIA S++ EQ G Y + V + E++ + R D
Sbjct: 99 PVFDTQIAASMLGYGEQVG-------YANLVK----------TVLERDLDKSQTRTD--- 138
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
W+ RPL+ +R AADDVR L +++ ++ +L+
Sbjct: 139 WSRRPLSAEQIRYAADDVRHLATLFNRLLHELD 171
>gi|312076359|ref|XP_003140825.1| 3'-5' exonuclease [Loa loa]
Length = 596
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
Query: 51 VIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKA-CKPALESSYITKVI 107
V+G D + V L G L ++ LA I + D + ++++ K LES I KVI
Sbjct: 344 VVGVDFKTVILGVQGEEFLSLIVLATTTQIVVFDVVHSDTILLESGVKEILESEKIIKVI 403
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE-EQEGRKRSPDDYISFVGLLADPRYCGI 166
HD KR + L ++ I L + DTQ+A+++++ E+ G+ + +SF L Y
Sbjct: 404 HDAKRVATLLAHRYAINLRKIFDTQVAHAILQHEKFGKALTDMHTVSFRNL--QRIYYPQ 461
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMM 213
S + L P W RP+TE + ++ L + + MM
Sbjct: 462 SIMMSDTTPRKLSHSPS-WGLRPITEDFLVTVVEEAHCLVTVLYRMM 507
>gi|320592146|gb|EFX04585.1| 3'-5' exonuclease [Grosmannia clavigera kw1407]
Length = 340
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 55 DCEGVDLCRHGSLCIMQL-AFPDA-IYLVD-------AIQGGETVVKACKPALESSYITK 105
D EGV+L R G++ I+Q+ P + YL+D A T + + LES+ I K
Sbjct: 142 DVEGVNLSRVGTVSIIQVFVLPKSRAYLLDVHTLKDKAFSTPGTRGRTFQDLLESAAIPK 201
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIA-YSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
VI D + DS+AL+ +F I+L + D Q+ + +GR + I L+
Sbjct: 202 VIFDVRNDSDALFGRFRIRLAGIQDLQLMELATRSYDKGRVKGLAKCIEKDAQLSPADKA 261
Query: 165 GISYQEKEEVRVLL----RQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
+++ VR+ L R+ F RPL+E + R DV+FLP ++ +L +
Sbjct: 262 DWKATKEKGVRLFLPGQGRRRHAF-NERPLSEDVRRYCIQDVQFLPQLWEYYNSRLTRA- 319
Query: 221 LWYLAVRGA 229
W VR A
Sbjct: 320 -WRKRVRRA 327
>gi|294953661|ref|XP_002787875.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902899|gb|EER19671.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 356
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 93/231 (40%), Gaps = 49/231 (21%)
Query: 55 DCEGVDLCRHGSLCIMQLAF---PDAIYLVDAIQGGETVVKAC-------KPALESSYIT 104
D EG++L R G++ + QL P ++Y+VD + G A K +E + I
Sbjct: 140 DFEGLNLSRDGAMSLAQLCLSSDPKSVYVVDITRLGFHAFHATTHTGTSLKSIMEDTLIE 199
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK------------------- 145
KV +D + D +ALY+QF + NV D Q+A + G
Sbjct: 200 KVFYDPRHDVDALYYQFNVAPQNVFDLQLAEVALRRARGLTVRYVIGLFKCLVQSEVFVQ 259
Query: 146 ---RSPDDYISFVG-LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADD 201
R I+ +G L +P++ G SY + +T RPL ++ A+ D
Sbjct: 260 PELRDFATRINDIGKALFEPKHGG-SY--------------KVFTERPLHPGIIVYASHD 304
Query: 202 VRFLPYIYHNMMKKLN-QQSLWYLAVRGALYCRCFCINENDYVDWPPLPPV 251
R+L +Y K+L WY V A R +DY+ PV
Sbjct: 305 ARYLLPLYDTFTKQLKCAGDNWYNRVLAASARRAEWYQHSDYLVATSEAPV 355
>gi|389626759|ref|XP_003711033.1| hypothetical protein MGG_16539 [Magnaporthe oryzae 70-15]
gi|351650562|gb|EHA58421.1| hypothetical protein MGG_16539 [Magnaporthe oryzae 70-15]
gi|440466112|gb|ELQ35397.1| hypothetical protein OOU_Y34scaffold00710g2 [Magnaporthe oryzae
Y34]
gi|440477259|gb|ELQ58361.1| hypothetical protein OOW_P131scaffold01641g3 [Magnaporthe oryzae
P131]
Length = 268
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 28/201 (13%)
Query: 55 DCEGVDLCRHGSLCIMQL-AFP-DAIYLVDAIQGGE---------TVVKACKPALESSYI 103
D EG++L R GS+ I+Q+ A P D +YLVD + G + + K LE +I
Sbjct: 49 DLEGINLSRMGSISILQIYAAPLDHVYLVDVHKLGSDAFTTKPRGSAGQTLKQILECPWI 108
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFV-------- 155
KV D + DS+AL+ FG+ L V D Q+ E R R ++S +
Sbjct: 109 PKVFFDVRNDSDALFAHFGVGLQGVADLQLM-----EIASRDRWRRRFLSGLAKCIELDA 163
Query: 156 GLLADPRYCGISYQEKEEVRVL--LRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMM 213
GL R + +++ + L + RPL + + + DV+ LP ++
Sbjct: 164 GLGLGERSAWVRNKDRGKALFAPELGGSYSVFNIRPLPDEIRDYCSQDVQLLPKLWARYD 223
Query: 214 KKLNQQSLWYLAVRGALYCRC 234
+L+ + W VR A R
Sbjct: 224 ARLS--AAWKDRVREAAVARV 242
>gi|294883488|ref|XP_002770959.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|294886213|ref|XP_002771613.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239874097|gb|EER02775.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239875319|gb|EER03429.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 221
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAF---PDAIYLVDAIQGGETVVKAC-------KPALESS 101
+ D EG++L R G++ + QL P ++Y+VD + G A K +E S
Sbjct: 1 MAVDFEGLNLSRDGAMSLAQLCLSSDPRSVYVVDITRLGFHAFHATTHTGTSLKSIMEDS 60
Query: 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEG 143
I KV +D + D +ALY+QF + NV D Q+A + G
Sbjct: 61 RIEKVFYDPRNDVDALYYQFNVAPQNVFDLQLAEVALRRARG 102
>gi|384247627|gb|EIE21113.1| 3'-5' exonuclease, partial [Coccomyxa subellipsoidea C-169]
Length = 165
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C++QL+ D YLVDA+ + + + LE + + KV+H +
Sbjct: 21 AVDLEHHALRSYLGITCLLQLSTGDKEYLVDALALHDHM-HLLQDVLEDARVVKVLHGGE 79
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L F + L NV DT+ A ++ +E S LL RYCG++ ++
Sbjct: 80 NDISWLQRDFHLYLVNVFDTEKACQVLGYEER---------SLAHLL--QRYCGVTANKQ 128
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYI 208
+ R D W RPL + +V A DV FL YI
Sbjct: 129 YQ-----RAD---WRVRPLAKELVDYARTDVHFLVYI 157
>gi|302837201|ref|XP_002950160.1| 3'-5' exonuclease [Volvox carteri f. nagariensis]
gi|300264633|gb|EFJ48828.1| 3'-5' exonuclease [Volvox carteri f. nagariensis]
Length = 313
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 16/137 (11%)
Query: 91 VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSP-D 149
++ K LE +TK+ +D + D+EALY Q G+ L VVD Q++ E R+ P
Sbjct: 129 LRCLKEVLECPSVTKLFYDVRCDAEALYHQHGVSLRGVVDLQLS-----EVAYRRYGPVV 183
Query: 150 DYISFVGLLADPRYCGISYQEKE-------EVRVL---LRQDPQFWTYRPLTELMVRAAA 199
+ +V L C ++ + +E + R+L +D ++W RPL++ VR AA
Sbjct: 184 RRVGYVIGLTRALECYLAPELRERWQSTAVDKRLLHETFNRDLRYWDRRPLSQEQVRYAA 243
Query: 200 DDVRFLPYIYHNMMKKL 216
DDV +L +++ L
Sbjct: 244 DDVLYLHHLHREFTAAL 260
>gi|405969639|gb|EKC34597.1| hypothetical protein CGI_10012948 [Crassostrea gigas]
Length = 378
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V+ C +DS ALY F I L NV D Q A+ ++EEQ+GRK P + V + P
Sbjct: 57 VMFQCSKDSGALYHNFQITLQNVFDIQDAHIILEEQKGRKLFPSLNLRNVCRVYSP-IDK 115
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR-FLPYIY 209
+ E++ ++ + +W RPLT V AA V+ +P +Y
Sbjct: 116 VPKHEEDSMKECAVESSDYWETRPLTAEKVSVAAGHVKALIPEVY 160
>gi|374299652|ref|YP_005051291.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
gi|332552588|gb|EGJ49632.1| ribonuclease D [Desulfovibrio africanus str. Walvis Bay]
Length = 409
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 21/171 (12%)
Query: 51 VIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
+G D E V +L ++QL ++LVD + G + L + K+ H
Sbjct: 47 AVGMDTEFVRSRTYFPTLGLIQLVADGGVFLVDPL--GVDDLSPLVEILADPRLIKIFHS 104
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C+ D EALY+ G V DTQ+A S + G P Y S V L G+
Sbjct: 105 CQEDLEALYYLCGFAPGPVFDTQVAASFL----GYGFQP-GYGSLVKAL-----FGVEL- 153
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
+K+E R W RPL+E + AA DVR+LP +Y + + L +Q
Sbjct: 154 DKDETR-------SNWIKRPLSESQLIYAAQDVRYLPAMYSILGQALTEQG 197
>gi|294953663|ref|XP_002787876.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902900|gb|EER19672.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 352
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 31/201 (15%)
Query: 45 SSERQLVIGFDCEGVDLCRHGSLCIMQLAF---PDAIYLVD-------AIQGGETVVKAC 94
S+ + + D EG++L R G++ + QL P ++Y+VD A +
Sbjct: 125 SNGKPTAMAVDFEGLNLSRDGAMSLAQLCLSSDPKSVYVVDITRLGFHAFHTTTHTGTSL 184
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF 154
K +E + I KV +D + D +ALY+QF + NV D Q+A + G + +
Sbjct: 185 KSIMEDARIEKVFYDPRNDVDALYYQFNVAPQNVFDLQLAEVALRRARGLT------VRY 238
Query: 155 V-----------GLLADPRYCGISYQEKEEVRVLL--RQDPQF--WTYRPLTELMVRAAA 199
V L P + + + + L + F +T RPL ++ A+
Sbjct: 239 VIGLFKCLIAQPELFTQPAMMDFARRINDAGKALYEPKHGGSFKVFTQRPLHTSIIVYAS 298
Query: 200 DDVRFLPYIYHNMMKKLNQQS 220
DVR+L + K+LN+ S
Sbjct: 299 HDVRYLLPLKDLFTKQLNEAS 319
>gi|88607542|ref|YP_504762.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
gi|88598605|gb|ABD44075.1| putative ribonuclease D [Anaplasma phagocytophilum HZ]
Length = 381
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 19/160 (11%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A+ + ++DA+ G + + +++ I KV HDC++D +AL F
Sbjct: 41 LCLLQIAYENKQCVIDALAEGIDLT-PLQEIFDNTQIFKVFHDCRQDLDALSLLFESLPR 99
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA L E E + + L+ ++ G+ + RV W+
Sbjct: 100 PIFDTQIAAMLCEYHENS-------VGYSKLV--EQFLGVKLNKMPFKRV-------DWS 143
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL--WYL 224
RPLTE VR A DDV +L +Y + L + WY+
Sbjct: 144 KRPLTESEVRYALDDVIYLYKLYGILRDILTSKGRLSWYM 183
>gi|115390535|ref|XP_001212772.1| predicted protein [Aspergillus terreus NIH2624]
gi|114193696|gb|EAU35396.1| predicted protein [Aspergillus terreus NIH2624]
Length = 266
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 23 DSVVPIHIVTNASQLPAEFLE-----PSSERQLVIGFDCEGVDLCRHGSLCIMQL--AFP 75
D P + ++S E LE PSS L + D EGV+L R+GS+ I+ L
Sbjct: 4 DPAAPKVELVDSSATLRELLEDLSLIPSSSPPLFL--DLEGVNLGRNGSISILSLYAVHK 61
Query: 76 DAIYLVDAIQGGETVVKACKP--------ALESSYITKVIHDCKRDSEALYFQFGIKLHN 127
IYLVD + G+ +P LES I KV+ D + DS+AL+ + I+L
Sbjct: 62 KTIYLVDVYKLGKAAFSNPQPDKHTSLRANLESPSIKKVLFDVRNDSDALFSHYNIRLDG 121
Query: 128 VVDTQI 133
+ D Q+
Sbjct: 122 IQDLQL 127
>gi|197116637|ref|YP_002137064.1| ribonuclease D [Geobacter bemidjiensis Bem]
gi|197085997|gb|ACH37268.1| ribonuclease D, putative [Geobacter bemidjiensis Bem]
Length = 377
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 29 HIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHG-SLCIMQLAFPDAIYLVDAIQGG 87
H+VT+ L E +E S R+ V+ FD E L + +C++Q++ L+D +
Sbjct: 14 HLVTDQKTLD-ELVERLS-RESVLAFDLEADSLHHYTEKVCLIQVSSTSEDRLIDPL--A 69
Query: 88 ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRS 147
VK P + I K+ H D +LY FGI++ N+ DT IA + E E
Sbjct: 70 PIDVKVLAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFLGESE----- 124
Query: 148 PDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207
LL + G+ + R W+ RP ++ M+ A D L
Sbjct: 125 ----FGLAALL--KKRFGVELDK--------RYQKADWSKRPFSQEMLDYAMKDTSLLIE 170
Query: 208 IYHNMMKKLNQQ 219
+Y + +L Q+
Sbjct: 171 LYRQLEAELKQK 182
>gi|253698875|ref|YP_003020064.1| 3'-5' exonuclease [Geobacter sp. M21]
gi|251773725|gb|ACT16306.1| 3'-5' exonuclease [Geobacter sp. M21]
Length = 377
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 24/192 (12%)
Query: 29 HIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHG-SLCIMQLAFPDAIYLVDAIQGG 87
H+VT+ L E +E S R+ V+ FD E L + +C++Q++ L+D +
Sbjct: 14 HLVTDQKTLD-ELVERLS-RESVLAFDLEADSLHHYTEKVCLIQVSSASEDRLIDPL--A 69
Query: 88 ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRS 147
VK P + I K+ H D +LY FGI++ N+ DT IA + E E
Sbjct: 70 PIDVKVLAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFLGESE----- 124
Query: 148 PDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207
LL + G+ + R W+ RP ++ M+ A D L
Sbjct: 125 ----FGLAALL--KKRFGVELDK--------RYQKADWSKRPFSQEMLDYAMKDTSLLIE 170
Query: 208 IYHNMMKKLNQQ 219
+Y + +L Q+
Sbjct: 171 LYRQLEAELKQK 182
>gi|443691503|gb|ELT93333.1| hypothetical protein CAPTEDRAFT_224359 [Capitella teleta]
Length = 268
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 13/117 (11%)
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL---LADP 161
KV+HDC+R +L Q+ ++L NV DTQ A+ L+ + K+ P IS L DP
Sbjct: 99 KVMHDCRRSGSSLQRQYQLRLCNVFDTQAAFCLLMME---KQLPPRLISLRDLYEKCGDP 155
Query: 162 -RYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR-FLPYIYHNMMKKL 216
R S QE + V +W RP++ +V++ A ++R LP ++ N+++++
Sbjct: 156 GRRMSTSLQEADGV-----GGGIYWAQRPMSSHLVQSLATELRTLLPNLHENLLREI 207
>gi|39995551|ref|NP_951502.1| ribonuclease D [Geobacter sulfurreducens PCA]
gi|39982314|gb|AAR33775.1| ribonuclease D, putative [Geobacter sulfurreducens PCA]
Length = 381
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
+C++Q A P +VD + + + P ++ I KV H D +L+ FGI++
Sbjct: 45 KVCLIQFAVPGYAAIVDPLAAPD--ISPLAPLFANAAIRKVFHGADYDIRSLHRDFGIEV 102
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF- 184
+N+ DT IA L+ E+E G++ Q ++ V L D Q+
Sbjct: 103 NNLFDTMIACQLLGERE---------------------FGLAAQLRKRFGVEL--DKQYQ 139
Query: 185 ---WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W+ RPLT M+ A D L +Y ++ +L ++
Sbjct: 140 RADWSRRPLTVGMIEYAVKDTTLLIELYRQLVAELEEKG 178
>gi|296416175|ref|XP_002837756.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633639|emb|CAZ81947.1| unnamed protein product [Tuber melanosporum]
Length = 253
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 54 FDCEGVDLCRHGSLCIMQLAF--PDAIYLVDAIQGGETV--------VKACKPALESSYI 103
D EG L RHG++ I+Q+ + YL+D G K K LES I
Sbjct: 34 LDLEGERLGRHGTIAIIQIHVLPQNHTYLLDITTLGREAFTFRENLQAKNLKTILESPSI 93
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIA-YSLIEEQEG-RKRSPDDYISFVGLLADP 161
TK + D + D++AL+ + I L V D Q+ Y+ E + G R R P + AD
Sbjct: 94 TKCLFDVRNDADALFNLYDISLRGVQDIQVMNYAAREVRNGVRGRGPRVMGLAKSIAAD- 152
Query: 162 RYCGISY-------QEKEEVRVLLRQDPQF------WTYRPLTELMVRAAADDVRFLPYI 208
CG++ ++KEE ++ +PQF + RPL + ++ DV LP +
Sbjct: 153 --CGLNRAALAEFERKKEEGGMIF--NPQFGGSYAVFAERPLRQDVLEYCVGDVVHLPTL 208
Query: 209 ---YHNMM 213
YH+++
Sbjct: 209 WRKYHDIL 216
>gi|440638493|gb|ELR08412.1| hypothetical protein GMDG_03201 [Geomyces destructans 20631-21]
Length = 331
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 41/231 (17%)
Query: 31 VTNASQLPAEFLEPSSERQLVIGFD---------CEGVDLCRHGSLCIMQL-AFPDA-IY 79
+N Q+P + L S ++ G D EG+ L RHGS+ I+ L P A IY
Sbjct: 23 TSNQQQIPTQILHESQHARVSHGCDNTNSKREIHLEGIRLSRHGSISIISLYVIPTAKIY 82
Query: 80 LVD-------AIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQ 132
L+D A + + K LES I KVI D + DS+AL+ F I + + D Q
Sbjct: 83 LIDIYTLGGAAFSTTNSNSVSLKTVLESPAIPKVIFDVRNDSDALFSHFQISVDGIKDLQ 142
Query: 133 IAYSLIEEQEGRKRSPDDYISFVGLLA------DPRYCGIS--YQEKEEVRVLLRQDPQF 184
+ + + G + ++V LA P + + +Q ++ L +
Sbjct: 143 LME--LASRMGNR-------AYVAGLAKCIEKDSPVFTTVKTEWQHTKDSASRLYNPEKG 193
Query: 185 WTY-----RPLTELMVRAAADDVRFLPYIYHNMMKKL-NQQSLWYLAVRGA 229
Y RP+ + A DV LP +Y KL N+ + W + VR A
Sbjct: 194 GRYEVFNERPMRPDIKEYCARDVALLPGLYGVYAAKLQNEGAFWRVLVREA 244
>gi|413953324|gb|AFW85973.1| putative DUF1692 domain containing protein [Zea mays]
Length = 1070
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 173 EVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
++R+ + DP FWT RPL+++MVRAA DV FL IY M+KL+++ L
Sbjct: 307 QIRMWQQGDPNFWTIRPLSDMMVRAATHDVCFLLNIYEKTMEKLSKERL 355
>gi|413951106|gb|AFW83755.1| hypothetical protein ZEAMMB73_317062 [Zea mays]
Length = 1594
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Query: 168 YQEKEEVRVLLRQ----DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
Y+E+ + V +R DP FWT RPL+++MVRAA DV FL IY M+KL+++ L
Sbjct: 298 YEEQRVIEVQIRMWQQGDPNFWTIRPLSDMMVRAATHDVCFLLNIYEKTMEKLSKERL 355
>gi|403344491|gb|EJY71591.1| hypothetical protein OXYTRI_07421 [Oxytricha trifallax]
Length = 967
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 19/158 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD ++ +++ P ITKV+H D E L F +
Sbjct: 319 QGFTCLMQISNRTHDYVVDTLKLRQSLGPKLLPLFTDPQITKVLHGADYDVEWLQKDFSL 378
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A ++++ P ++F LL YCG+ +K ++
Sbjct: 379 YVVNMFDTGQAARILQK-------PGFGLAF--LLQS--YCGVLTDKKYQL--------A 419
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
W RP+ E M++ A +D +L Y+Y M K+L Q ++
Sbjct: 420 DWRQRPIPEEMLKYAREDTHYLLYVYDLMRKELIQNAV 457
>gi|167628093|ref|YP_001678593.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25017]
gi|167598094|gb|ABZ88092.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25017]
Length = 366
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 24/154 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A + I+L+D ++ + K E + I K+IH D + F +++
Sbjct: 38 LCLVQIATENEIFLIDTLEDLD--FSKLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A S + Q IS LL D + + + ++ QF
Sbjct: 96 NIFDTQLAASFLGTQSQ--------ISLKALLKDI------------LDIEMEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL++ A DV+ L I +++ KLNQ
Sbjct: 136 WRKRPLSQKQFDYALKDVKHLIEIKYHLESKLNQ 169
>gi|257784443|ref|YP_003179660.1| ribonuclease D [Atopobium parvulum DSM 20469]
gi|257472950|gb|ACV51069.1| ribonuclease D [Atopobium parvulum DSM 20469]
Length = 379
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 20/151 (13%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
LC++Q++ I +D + + + K LE+ I K++H C +D E L +
Sbjct: 40 KLCLVQVSTGSEIAAIDPLLIDD--LTPLKELLENPEIVKILHACSQDLEVLLEKMDCAC 97
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185
V DTQ+A +F+G+ Y G+ + V++ + W
Sbjct: 98 APVFDTQVA-----------------AAFLGMRQQVSYAGL-VENFANVKLAKAESLTDW 139
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ RPL + + A DDVR+LP IY+ M++KL
Sbjct: 140 SKRPLDKEQLVYAEDDVRYLPAIYNQMVEKL 170
>gi|408393574|gb|EKJ72835.1| hypothetical protein FPSE_06881 [Fusarium pseudograminearum CS3096]
Length = 282
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 27/185 (14%)
Query: 54 FDCEGVDLCRHGSLCIMQ-LAFPDAIY-LVDAIQGGETVV-------KACKPALESSYIT 104
D EG +L R+G+L I+ L P + L+D G + K LE + T
Sbjct: 32 LDLEGNNLSRNGNLTIITVLIHPTRVTGLIDVQTLGNSAFTTPTSSGNTLKSILEDTRTT 91
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDD-YISFVGLLADPRY 163
K + D + D++AL+ I+L V D Q+ E R+ D Y+ + + + R
Sbjct: 92 KRLWDVRNDADALWAHHQIRLAGVTDIQLL-------ENASRAGDKTYVRGLDICVE-RD 143
Query: 164 CGISYQE-------KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
G++ E K EV+ L++ D +T RPL ++ +DV +LP +Y K+
Sbjct: 144 LGLNAMEVQRWTRTKREVKALMQND--IFTRRPLDTKTMQYCVNDVLYLPALYSAYAKRT 201
Query: 217 NQQSL 221
+ Q +
Sbjct: 202 DGQRM 206
>gi|281210039|gb|EFA84207.1| 3'-5' exonuclease domain-containing protein [Polysphondylium
pallidum PN500]
Length = 315
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVV-KACKPALESSYITKVIH 108
VI D EG+++ + G + ++Q+ ++L D ++ G+ + + + LES+ I K++H
Sbjct: 156 VIAIDVEGLEMGKQGEISLVQVGLMSGRVFLFDVLRLGQQLFDRGLRQILESNNILKIVH 215
Query: 109 DCKRDSEALY 118
DC+RDSE LY
Sbjct: 216 DCRRDSEILY 225
>gi|294883486|ref|XP_002770958.1| hypothetical protein Pmar_PMAR007114 [Perkinsus marinus ATCC 50983]
gi|239874096|gb|EER02774.1| hypothetical protein Pmar_PMAR007114 [Perkinsus marinus ATCC 50983]
Length = 469
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 48/195 (24%)
Query: 55 DCEGVDLCRHGSLCIMQLAF---PDAIYLVDAIQGGETVVKAC-------KPALESSYIT 104
D EG++L R G++ + QL P ++Y+VD + G A K +E S I
Sbjct: 280 DFEGLNLSRDGAMSLAQLCLSSDPRSVYVVDITRLGFHASHATTHTGTSLKSIMEDSRIE 339
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK------------------- 145
KV +D + D +ALY+QF + NV D Q+A + G
Sbjct: 340 KVFYDPRNDVDALYYQFNVAPQNVFDLQLAEVALRRARGLTVRYVIGLFKCLVQSEVFVQ 399
Query: 146 ---RSPDDYISFVG-LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADD 201
R +I+ +G L +P++ G SY + +T RPL ++ A+ D
Sbjct: 400 PGLREFAMWINDIGKALFEPKHGG-SY--------------KVFTERPLHPGIIVYASHD 444
Query: 202 VRFLPYIYHNMMKKL 216
VR+L +Y K+L
Sbjct: 445 VRYLLPLYDAFTKQL 459
>gi|210632651|ref|ZP_03297493.1| hypothetical protein COLSTE_01396 [Collinsella stercoris DSM 13279]
gi|210159428|gb|EEA90399.1| ribonuclease D [Collinsella stercoris DSM 13279]
Length = 377
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 22/161 (13%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
H LC++Q+A PD ++D + + + + KV H C +D E L G+
Sbjct: 35 HAKLCLVQVATPDECVVIDPLTIDD--LSPLAELMADVDTLKVFHACSQDMEVLVHTLGV 92
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ DTQ+A + E R+ Y + V +CG+S + E +
Sbjct: 93 CPAPIFDTQVAAGFLGE-----RAQCSYHNLVH-----SFCGVSLPKTESL--------T 134
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ--QSLW 222
W+ RPL+ + A DDVR+L Y + KL+ ++ W
Sbjct: 135 DWSRRPLSPQQIEYAVDDVRYLIDAYRVIESKLHSLGRTAW 175
>gi|405983331|ref|ZP_11041637.1| ribonuclease D [Slackia piriformis YIT 12062]
gi|404388937|gb|EJZ84018.1| ribonuclease D [Slackia piriformis YIT 12062]
Length = 382
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 30/157 (19%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALE---SSYITKVIHDCKRDSEALYFQFGI 123
LC++QLA + VD + +K P ++ ITK+ H +D E + G+
Sbjct: 38 LCLIQLATEEVSVAVDPFE-----IKDLTPLIDLFVDESITKLFHAAVQDMELIVHALGV 92
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
V DTQ+A SL L D G E V L++
Sbjct: 93 VPKPVFDTQVAASL--------------------LGDTLQIGYGALVMSECGVRLKKADS 132
Query: 184 F--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
F W+ RPLT+ + A DDV +LP +Y +M KKL +
Sbjct: 133 FTDWSRRPLTDSQIEYALDDVIYLPMLYRSMKKKLEE 169
>gi|294886215|ref|XP_002771614.1| hypothetical protein Pmar_PMAR014646 [Perkinsus marinus ATCC 50983]
gi|239875320|gb|EER03430.1| hypothetical protein Pmar_PMAR014646 [Perkinsus marinus ATCC 50983]
Length = 463
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 55 DCEGVDLCRHGSLCIMQLAF---PDAIYLVDAIQGGETVVKAC-------KPALESSYIT 104
D EG++L R G++ + QL P ++Y+VD + G A K +E S I
Sbjct: 280 DFEGLNLSRDGAMSLAQLCLSSDPRSVYVVDITRLGFHAFHATTHTGTSLKSIMEDSRIE 339
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEG 143
KV +D + D +ALY+QF + NV D Q+A + G
Sbjct: 340 KVFYDPRNDVDALYYQFNVAPQNVFDLQLAEVALRRARG 378
>gi|358401722|gb|EHK51020.1| hypothetical protein TRIATDRAFT_54696 [Trichoderma atroviride IMI
206040]
Length = 260
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 14/94 (14%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAF--PDAIYLVDAIQGGETVVKACKPA----------LE 99
I D EGV+L RHG++ I+QL + +YL+D + E PA LE
Sbjct: 33 IYIDLEGVNLSRHGTISILQLYIHPTNKVYLIDVLILKEKCFST--PATISPLTLIDILE 90
Query: 100 SSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
S KV D + DS++LY F IKL VVD Q+
Sbjct: 91 SKSTPKVFFDVRNDSDSLYSHFQIKLAGVVDLQL 124
>gi|443729778|gb|ELU15581.1| hypothetical protein CAPTEDRAFT_220187 [Capitella teleta]
Length = 705
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVD-AIQGGETVVKACKPALESSYITKVIHD 109
+I EG+ + R+G+L +Q+A + L D G + + LE I K+IHD
Sbjct: 201 IISIAAEGIRIGRNGTLAWLQMATRQHVMLFDMKALGPRAFEEGIRYLLEEPTILKIIHD 260
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
C+ S+ L+ + I+L N+ DTQ+A ++IE
Sbjct: 261 CRGLSDLLHHIYKIRLVNIFDTQVADAVIE 290
>gi|407847392|gb|EKG03114.1| hypothetical protein TCSYLVIO_005846 [Trypanosoma cruzi]
Length = 381
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 14/158 (8%)
Query: 65 GSLCIMQLAFPDA---IYLVDAIQ-GGETVVKACKPALESSYITKVIHDCKRDSEALYFQ 120
G + ++Q A DA ++L D + T VK+ + L + I K++ DC+RD EAL Q
Sbjct: 91 GRISLLQ-ACSDAKPVVFLFDVLTLTAPTFVKSVESFLRNRGIRKLLFDCRRDVEALSSQ 149
Query: 121 FGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKE---EVRVL 177
G+K V+D Q+ ++ I + + RS + +L G++ Q+ + + +
Sbjct: 150 LGLKPEGVLDLQVFFTAI---QWKLRSVNRRSGMTYVLKS--VAGLTRQDGDSAVQAAMT 204
Query: 178 LRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
L P W RPL + + AADDVR + + +++++K
Sbjct: 205 LGNRP-VWDIRPLPDHFLEYAADDVRHILLLANHLVEK 241
>gi|390345989|ref|XP_001198503.2| PREDICTED: exosome component 10 [Strongylocentrotus purpuratus]
Length = 752
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 16 DPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH-GSLCIMQLAF 74
DP P+++ P +V S+L E L S ++ I D E + G C+MQ++
Sbjct: 253 DPSYTPLEAT-PFTLVDTVSKL--EELSRSLKQSKEIAVDLEHHSYRSYLGFTCLMQIST 309
Query: 75 PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
+ Y+VD ++ + ++ A I KV H D + L G+ + N+ DT
Sbjct: 310 AEHDYVVDTLEL-RSELQMLNDAFTDPKIVKVFHGANMDIDWLQRDLGLYVVNMFDTH-- 366
Query: 135 YSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELM 194
+ + + S LL+ RYC + ++ ++ W RPL E M
Sbjct: 367 -------QASRSLGFPHHSLASLLS--RYCQVEADKQYQLAD--------WRIRPLPEEM 409
Query: 195 VRAAADDVRFLPYIYHNMMKKL 216
+ A +D +L YIYH M +L
Sbjct: 410 LHYAREDTHYLLYIYHTMKNEL 431
>gi|256822615|ref|YP_003146578.1| ribonuclease D [Kangiella koreensis DSM 16069]
gi|256796154|gb|ACV26810.1| ribonuclease D [Kangiella koreensis DSM 16069]
Length = 384
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
L ++Q+ IYL+D + + + A S+ + K +H C D EALY Q+G + +
Sbjct: 53 LALIQIYDGKEIYLIDPLAFDD--LSALTELFASTSVVKALHSCSEDLEALYHQYGFEFN 110
Query: 127 NVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
V DTQIA SL I G + ++S V +KE +
Sbjct: 111 QVFDTQIAASLDGIGLSVGYGNIVEHFLSVV-------------LDKEHTKTD------- 150
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVD 244
W RPL++ AA DV++L +Y+ + L ++ L+ + I +DY +
Sbjct: 151 WLQRPLSQEQRVYAAQDVQYLMPVYYRLRDSLLEKGLFECVIEDVNSIFAAIIQADDYAE 210
>gi|224079457|ref|XP_002190659.1| PREDICTED: exosome component 10-like, partial [Taeniopygia guttata]
Length = 504
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 34/196 (17%)
Query: 20 KPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLA 73
+PI+ P H +T +L +E + + F +DL H G C+MQ++
Sbjct: 285 RPIEET-PCHFITTLDEL----VELNEKLMTCKEF---ALDLEHHSYRSFLGLTCLMQIS 336
Query: 74 FPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
+++D + + + I KV+H D E L FG+ L NV DT
Sbjct: 337 TRTEDFIIDTL-ALRSDMNILNETFTDPAIVKVLHGADSDVEWLQRDFGLYLVNVFDTHQ 395
Query: 134 AYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTEL 193
A L+ GR S D + YCG+ +K ++ W RPL E
Sbjct: 396 AARLL--NLGR-HSLDHLLKL--------YCGVDADKKYQLAD--------WRIRPLPEE 436
Query: 194 MVRAAADDVRFLPYIY 209
M+R A DD +L YIY
Sbjct: 437 MIRYARDDTHYLLYIY 452
>gi|337755515|ref|YP_004648026.1| ribonuclease D [Francisella sp. TX077308]
gi|336447120|gb|AEI36426.1| Ribonuclease D [Francisella sp. TX077308]
Length = 364
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A + I+L+D ++ + K E + I K+IH D + F +++
Sbjct: 38 LCLVQIATENEIFLIDTLEDLD--FSKLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A S + Q IS LL D + + + ++ QF
Sbjct: 96 NIFDTQLAASFLGTQSQ--------ISLKALLKDI------------LDIEMEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL++ A DV L I +++ KLNQ
Sbjct: 136 WRKRPLSQKQFDYALKDVEHLIEIKYHLESKLNQ 169
>gi|254877166|ref|ZP_05249876.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25015]
gi|254843187|gb|EET21601.1| ribonuclease D [Francisella philomiragia subsp. philomiragia ATCC
25015]
Length = 364
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 24/154 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A + I+L+D ++ + K E + I K+IH D + F +++
Sbjct: 38 LCLVQIATENEIFLIDTLEDLD--FSKLKDIFEDTNIQKIIHSATNDIPIIKRFFDCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A S + Q IS LL D + + + ++ QF
Sbjct: 96 NIFDTQLAASFLGTQSQ--------ISLKALLKDI------------LDIEMEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL++ A DV L I +++ KLNQ
Sbjct: 136 WRKRPLSQKQFDYALKDVEHLIEIKYHLESKLNQ 169
>gi|335420266|ref|ZP_08551304.1| ribonuclease D [Salinisphaera shabanensis E1L3A]
gi|334894625|gb|EGM32810.1| ribonuclease D [Salinisphaera shabanensis E1L3A]
Length = 382
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 25/202 (12%)
Query: 27 PIHIVTNASQLP-AEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAI 84
P H+VT AEF ER I D E + + + LC++Q+A I L+D I
Sbjct: 6 PEHVVTITDDAALAEFAARMRERDW-IAIDTEFLRESTYYPELCLVQIADAHEIGLIDVI 64
Query: 85 QGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
+ ++ L + + KV H ++D E LY +FG + DTQ+A L+
Sbjct: 65 ALDD--LEPLAALLTDTSVLKVFHSAEQDLEVLYQRFGTMPAPLFDTQVAAPLV------ 116
Query: 145 KRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
DD + + L+ + + E + R D W+ RPL + AADDVR+
Sbjct: 117 --GLDDQMGYARLIK-------ALLDIELPKAHTRTD---WSKRPLPTGALDYAADDVRY 164
Query: 205 LPYIYHNMMKKL--NQQSLWYL 224
L YH + L +++ W +
Sbjct: 165 LALAYHVIGNTLVEHEREAWLV 186
>gi|113676437|ref|NP_001038930.1| exonuclease 3'-5' domain-containing protein 1 [Danio rerio]
gi|123911622|sp|Q0P3U3.1|EXD1_DANRE RecName: Full=Exonuclease 3'-5' domain-containing protein 1;
AltName: Full=Exonuclease 3'-5' domain-like-containing
protein 1
gi|112418997|gb|AAI22449.1| Zgc:154068 [Danio rerio]
Length = 378
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVD-AIQGGETVVKACKPALESSYITK 105
+ Q VIG + LC +Q+A +YL D + GG LE+++I K
Sbjct: 132 QEQDVIGIGADVYGQSGQERLCWLQVATKKVVYLFDILLLGGPAFKNGLSMILENTHILK 191
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLL 158
V+HDC+ + L +F ++L NV DTQ+A L+ E PD S LL
Sbjct: 192 VLHDCRCITRCLRTEFRVQLTNVFDTQVAELLLFFNESGGFLPDRPASLPELL 244
>gi|302335597|ref|YP_003800804.1| ribonuclease D [Olsenella uli DSM 7084]
gi|301319437|gb|ADK67924.1| ribonuclease D [Olsenella uli DSM 7084]
Length = 376
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q A PD +D I + + L ITKV H C +D E +Y
Sbjct: 38 LCLIQAATPDESAAIDPILIDD--LSPLARLLTDESITKVFHACSQDLEVIYDALHCVPG 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + + ++ I + G L D CG+ + E + W+
Sbjct: 96 PIFDTQLAAAFLGHRQ--------QIGY-GALVDA-CCGVRLPKAESL--------TDWS 137
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
RPL + A DDVR+LP IY MM +L
Sbjct: 138 RRPLDAEQLAYAEDDVRYLPGIYDQMMAEL 167
>gi|220933694|ref|YP_002512593.1| ribonuclease D [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995004|gb|ACL71606.1| ribonuclease D [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 396
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 21/170 (12%)
Query: 52 IGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E V + + LC++Q+A PDA+ +D I + + L +TKV+H
Sbjct: 36 IALDTEFVREKTYYPRLCLVQVATPDALACIDPIALPD--LGPLAALLHDPAVTKVVHAA 93
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+D E L G V DTQ+A SL+ D I + R I Y +
Sbjct: 94 HQDMEILLQSTGRVPTPVFDTQVAVSLL--------GHGDQIGYA------RMVQI-YLD 138
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
E + R D W+ RPL +R AADDVR L +Y ++K L ++
Sbjct: 139 LELDKGHTRTD---WSQRPLETAQLRYAADDVRHLARVYPMILKDLEEKG 185
>gi|387126864|ref|YP_006295469.1| ribonuclease D [Methylophaga sp. JAM1]
gi|386273926|gb|AFI83824.1| Ribonuclease D [Methylophaga sp. JAM1]
Length = 382
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 26/158 (16%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSY---ITKVIHDCKRDSEALYFQFG 122
LC++Q+A D I VD I +K P L Y IT V H ++D E LY
Sbjct: 40 QLCLIQIANDDIIACVDPI-----AIKDLTPLLNLLYQPDITLVFHAARQDLELLYLLKN 94
Query: 123 IKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
N+ DTQ+A +++ + D I + L+ +++ +V +
Sbjct: 95 SLPPNLFDTQLAATILGD--------GDQIGYGNLV----------KQRLDVSLDKAHSR 136
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
WT RPL+ + AADDVR+L +YH M L +Q
Sbjct: 137 ADWTQRPLSPEQLEYAADDVRYLCELYHQMSADLEKQQ 174
>gi|449301231|gb|EMC97242.1| hypothetical protein BAUCODRAFT_47352, partial [Baudoinia
compniacensis UAMH 10762]
Length = 239
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 27/182 (14%)
Query: 55 DCEGVDLCRHGSLCIMQ-LAFPDA-IYLVD-------AIQGGETVVKACKPALESSYITK 105
D EG +L R+G+L ++ L P+ +YLVD A T + K LES+ I K
Sbjct: 27 DLEGNNLSRNGTLSLVTILLVPEKEVYLVDVTTLEHDAFTTAGTNGRTLKSVLESTNIVK 86
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V D + DS+AL+ +GI++ + D Q+ + + KR+ + + R
Sbjct: 87 VFFDIRNDSDALFGLYGIRVAGIEDLQLME--LASRSFSKRNVNGLARCI-----ERDGS 139
Query: 166 ISYQEKEEVRVLLRQ-----DPQ------FWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214
I ++ E +++ Q DP + RPL++ +++ DV+F+P++ +
Sbjct: 140 IELSKRNEWQIIKDQGKRLFDPDRGGSYAVFDQRPLSKEILQYCTQDVKFMPHLREVYRR 199
Query: 215 KL 216
+L
Sbjct: 200 RL 201
>gi|374855272|dbj|BAL58133.1| DNA polymerase I [uncultured Acidobacteria bacterium]
Length = 589
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 51 VIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+G D E L G + ++Q+A P+ I+++D G + +P LE KV+H+
Sbjct: 25 VLGVDTETTALDPYQGRIRLLQIATPEDIFVLDLFALGLQALDILRPVLEGEQPVKVLHN 84
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKR 146
K D++ L GI+L V DT +A L+ + KR
Sbjct: 85 AKFDAKMLRHHAGIELGRVFDTMLASQLVAAGDMTKR 121
>gi|118394980|ref|XP_001029847.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89284120|gb|EAR82184.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 1070
Score = 53.5 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAI------YLVDAIQGGET------VVKAC 94
++Q +G D EG L +HG + ++Q+++ D I Y+ D ++ + KA
Sbjct: 843 QQQSYLGVDLEG-SLSKHGHIELIQISYHDFIQNHSFIYVFDFVEMEKQQEVFILAKKAI 901
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEE--------QEGRKR 146
K +E I K++ C++D+ ALY F ++ N +DTQ+A++ I + Q +K+
Sbjct: 902 KQIMEDKSIIKILQGCQKDALALYHLFSTQIINGLDTQVAHNFIIQLKALSDLKQNNKKK 961
Query: 147 SPDDYISFVGL------LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAAD 200
D GL P + + + V Q + RP+ E + ++
Sbjct: 962 IKDLQYFNCGLNQILQIYNAPNGLNPLKAKFQSIFVDPVQSAHYMKQRPINEEFLIYSSK 1021
Query: 201 DVRFLPYIYHNMMKKL--NQQSLW 222
DV L ++ N++K L N ++L+
Sbjct: 1022 DVEDLIPVFFNILKSLISNLKTLY 1045
>gi|413949740|gb|AFW82389.1| putative DUF1692 domain containing protein [Zea mays]
Length = 1061
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 173 EVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
++R+ + DP FWT RPL+++MVRAA DV FL IY M+KL++
Sbjct: 307 QIRMWQQGDPNFWTIRPLSDMMVRAATHDVCFLLNIYEKTMEKLSK 352
>gi|330927778|ref|XP_003301996.1| hypothetical protein PTT_13665 [Pyrenophora teres f. teres 0-1]
gi|311322891|gb|EFQ89918.1| hypothetical protein PTT_13665 [Pyrenophora teres f. teres 0-1]
Length = 314
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 20/185 (10%)
Query: 55 DCEGVDLCRHGSLCIMQLA-----FPDAIYLVDAIQGGETVVKA-------CKPALESSY 102
D EGV+LCR GS+ I L ++L+D G K LE
Sbjct: 41 DLEGVNLCREGSISIFTLLVDIDIITRGVFLIDVYTLGAQAFNTPGAKKTTLKDMLEDEK 100
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR 162
I KV D + DS+AL+ FG+ L + D Q+ S + ++ + V R
Sbjct: 101 IPKVFFDVRNDSDALFTHFGVALQGIEDVQLMESATRKTTASRKYLNGLAKCVENKLPTR 160
Query: 163 YCGISYQ----EKEEVRVLLRQDP----QFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214
+ G KE+ L + + + + RP+ + ++ DVR LP + +
Sbjct: 161 HGGGGLAAWKLAKEKGERLFKAEHGGSYEVFNQRPIPDDIISYCVGDVRHLPELRDTFYR 220
Query: 215 KLNQQ 219
+ Q
Sbjct: 221 QQTHQ 225
>gi|351713711|gb|EHB16630.1| Exosome component 10 [Heterocephalus glaber]
Length = 882
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 73/171 (42%), Gaps = 28/171 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+CE VDL H G C+MQ++ ++VD ++ + +L + I K
Sbjct: 305 LNCEEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-ILNESLTNPAIVK 363
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ R DY+ + YCG
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL----NLGRHSLDYLLRL-------YCG 412
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ ++ ++ W RPL E M+ A DD +L YIY M +L
Sbjct: 413 VESNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|355575967|ref|ZP_09045340.1| ribonuclease D [Olsenella sp. oral taxon 809 str. F0356]
gi|354817183|gb|EHF01693.1| ribonuclease D [Olsenella sp. oral taxon 809 str. F0356]
Length = 376
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 22/182 (12%)
Query: 39 AEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPA 97
A F E +S+ + V+ D E + + LC++Q+A D VD I + + +
Sbjct: 10 ARFCERASDSK-VLAVDTEFLRERTYFPRLCLIQVATADESCAVDPILIED--LTPLRRL 66
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE +TKV H C +D E + G V DTQ+A + + ++ I + L
Sbjct: 67 LEDRSVTKVFHACTQDLEVILDGMGCVPAPVFDTQLAAAFLGHRQ--------QIGYGAL 118
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ CG+ + E + W+ RPL +R A DDV +LP IY M+ +L
Sbjct: 119 VEA--CCGVRLPKAESL--------TDWSRRPLDAEQLRYAEDDVIYLPRIYEQMVSELA 168
Query: 218 QQ 219
++
Sbjct: 169 RR 170
>gi|390368374|ref|XP_003731440.1| PREDICTED: exosome component 10-like, partial [Strongylocentrotus
purpuratus]
Length = 776
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 16 DPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH-GSLCIMQLAF 74
+P P+++ P +V S+L E L S ++ I D E + G C+MQ++
Sbjct: 107 NPSYTPLEAT-PFTLVDTVSKL--EELSRSLKQSKEIAVDLEHHSYRSYLGFTCLMQIST 163
Query: 75 PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
+ Y+VD ++ + ++ A I KV H D + L G+ + N+ DT A
Sbjct: 164 AEHDYVVDTLEL-RSELQMLNDAFTDPKIVKVFHGANMDFDWLQRDLGLYVVNMFDTHQA 222
Query: 135 YSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELM 194
+ + S LL+ RYC + ++ ++ W RPL E M
Sbjct: 223 SRSLGF---------PHHSLASLLS--RYCQVEADKQYQL--------ADWRIRPLPEEM 263
Query: 195 VRAAADDVRFLPYIYHNMMKKL 216
+ A +D +L YIYH M +L
Sbjct: 264 LHYAREDTHYLLYIYHTMKNEL 285
>gi|434388848|ref|YP_007099459.1| ribonuclease D [Chamaesiphon minutus PCC 6605]
gi|428019838|gb|AFY95932.1| ribonuclease D [Chamaesiphon minutus PCC 6605]
Length = 207
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 37 LPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
L A++L+ S + + + G++ R LC++QL F I V I G+T +
Sbjct: 15 LTAKYLQAES---IAVDTETMGLNYLR-DRLCLVQL-FSPGILTVIRIAKGQTAAPNLQQ 69
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
++S+ +TKV H + D L + GI+ + T+IA LI R + G
Sbjct: 70 VMQSTTVTKVFHFARFDVAQLRHRLGIETQPIFCTKIASKLIRTYSNRHGLKELVAQLEG 129
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ D + + E L++ +R AA+DVR+L + + KL
Sbjct: 130 VELDKSAQSSDWGDAEN----------------LSDEQLRYAANDVRYLISMRQKLTTKL 173
Query: 217 NQQSLWYLA 225
++ W LA
Sbjct: 174 QREDRWELA 182
>gi|449522510|ref|XP_004168269.1| PREDICTED: exosome component 10-like [Cucumis sativus]
Length = 935
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD ++ V + + KV+H RD L FGI
Sbjct: 285 QGLTCLMQISTRTEDYVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDVVWLQRDFGI 344
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQD 181
+ N+ DT A +++ + R+ +Y+ F G+ A+ Y
Sbjct: 345 YICNLFDTGQASRVLKLE----RNSLEYLLHHFCGVAANKEYQNAD-------------- 386
Query: 182 PQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL E MVR A +D +L YIY M KL
Sbjct: 387 ---WRLRPLPEEMVRYAREDTHYLLYIYDLMRMKL 418
>gi|414880844|tpg|DAA57975.1| TPA: hypothetical protein ZEAMMB73_592594 [Zea mays]
Length = 761
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
Q K + L DP FWT RPL+++MVRAA DV FL IY M+KL++
Sbjct: 483 QMKNKQTATLGDDPNFWTIRPLSDMMVRAATHDVCFLLNIYEKTMEKLSKH 533
>gi|449462768|ref|XP_004149112.1| PREDICTED: exosome component 10-like [Cucumis sativus]
Length = 936
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD ++ V + + KV+H RD L FGI
Sbjct: 285 QGLTCLMQISTRTEDYVVDTLKLRIHVGPYLREVFKDPSKKKVLHGADRDVVWLQRDFGI 344
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQD 181
+ N+ DT A +++ + R+ +Y+ F G+ A+ Y
Sbjct: 345 YICNLFDTGQASRVLKLE----RNSLEYLLHHFCGVAANKEYQNAD-------------- 386
Query: 182 PQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL E MVR A +D +L YIY M KL
Sbjct: 387 ---WRLRPLPEEMVRYAREDTHYLLYIYDLMRMKL 418
>gi|347975811|ref|XP_003437235.1| unnamed protein product [Podospora anserina S mat+]
gi|170940093|emb|CAP65319.1| unnamed protein product [Podospora anserina S mat+]
Length = 274
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 80/183 (43%), Gaps = 24/183 (13%)
Query: 55 DCEGVDLCRHGSLCIMQL-AFPDA-IYLVDAIQGGE--------TVVKACKPALESSYIT 104
D EGV L RHG++ I+Q+ P YL+D GE T + K LES I
Sbjct: 58 DLEGVYLSRHGTISILQIYVLPRRRAYLIDVHILGEKAFSTLSSTTGRTFKDILESETIP 117
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK------RSPDDYISFVGLL 158
KV D + DS+AL+ F I+L V D Q+ L R+ R + S L
Sbjct: 118 KVFFDVRNDSDALFSHFQIRLAGVQDLQL-MELATRTYSRRVVCGLARCIERDAS---LS 173
Query: 159 ADPRYCGISYQEKEEVRVLLRQDP---QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
R ++ +E+ R+ + Q + RPL E + R DV LP ++ + K
Sbjct: 174 TSVRSSWMTTKER-GTRLFAPERGGSYQVFNERPLNEEIRRYCVQDVHLLPRLWAHYYGK 232
Query: 216 LNQ 218
L +
Sbjct: 233 LTK 235
>gi|348571395|ref|XP_003471481.1| PREDICTED: exosome component 10-like isoform 2 [Cavia porcellus]
Length = 860
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 56 CE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVI 107
CE VDL H G C+MQ++ +LVD ++ + + +L + I KV
Sbjct: 307 CEEFAVDLEHHSYRSFLGLTCLMQISTRTEDFLVDTLEL-RSEMYILNESLTNPAIVKVF 365
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
H D E L FG+ + N+ DT A L+ GR S D + YCG+
Sbjct: 366 HGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLRL--------YCGVE 414
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 415 SNKQYQLAD--------WRVRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|348571393|ref|XP_003471480.1| PREDICTED: exosome component 10-like isoform 1 [Cavia porcellus]
Length = 885
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 71/165 (43%), Gaps = 28/165 (16%)
Query: 56 CE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVI 107
CE VDL H G C+MQ++ +LVD ++ + + +L + I KV
Sbjct: 307 CEEFAVDLEHHSYRSFLGLTCLMQISTRTEDFLVDTLEL-RSEMYILNESLTNPAIVKVF 365
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
H D E L FG+ + N+ DT A L+ GR S D + YCG+
Sbjct: 366 HGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLRL--------YCGVE 414
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 415 SNKQYQLAD--------WRVRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|341899969|gb|EGT55904.1| hypothetical protein CAEBREN_09428 [Caenorhabditis brenneri]
Length = 574
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 14/211 (6%)
Query: 51 VIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKA-CKPALESSYITKVI 107
V+G D + V + G L + +A I + D ++++ K LES + KVI
Sbjct: 317 VVGLDLKTVTVGVDGEIFLSLGVIATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDY-ISFVGLLADPRYCGI 166
HD +R + L ++ + + NV DTQ+A+SL++ + K D ISF+ L Y
Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHDKFGKSLHDMRPISFINL--QRVYYPQ 434
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR-FLPYIYHNMMKKLNQQSLWYLA 225
S + + Q P W RP+TE ++ L +Y + +L +
Sbjct: 435 SIMLSDVTPRKMSQSPN-WGVRPITEEFQLTIVEEAHCLLSALYQAL------SNLIPVH 487
Query: 226 VRGALYCRCFCINENDYVDWPPLPPVPDYLI 256
+RG +C +N + + P P P I
Sbjct: 488 LRGLFEDKCIEVNHPEVLLASPNRPPPQPFI 518
>gi|222474840|ref|YP_002563255.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
gi|222418976|gb|ACM48999.1| ribonuclease D (rnd) [Anaplasma marginale str. Florida]
Length = 386
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 37/169 (21%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESS---------YITKVIHDCKRDSEAL 117
LC++Q+A+ QGG+ VV L+ S I KV HDC++D +AL
Sbjct: 45 LCLLQMAY----------QGGQCVVDVLDERLDLSPLQEIFDDEGIYKVFHDCRQDLDAL 94
Query: 118 YFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVL 177
+F + DTQ A L E D+ + + L+ ++ G+ ++L
Sbjct: 95 SQRFTRLPRPIFDTQTASMLCEYH-------DNSVGYSKLV--EQFLGVKLN-----KLL 140
Query: 178 LRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN--QQSLWYL 224
++ W++RPL+E VR A DDV +L +Y ++ L ++ W+L
Sbjct: 141 FKRVD--WSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKERLTWFL 187
>gi|254994696|ref|ZP_05276886.1| ribonuclease D (rnd) [Anaplasma marginale str. Mississippi]
Length = 386
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 37/169 (21%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESS---------YITKVIHDCKRDSEAL 117
LC++Q+A+ QGG+ VV L+ S I KV HDC++D +AL
Sbjct: 45 LCLLQMAY----------QGGQCVVDVLDERLDLSPLQEIFDDEGIYKVFHDCRQDLDAL 94
Query: 118 YFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVL 177
+F + DTQ A L E D+ + + L+ ++ G+ ++L
Sbjct: 95 SQRFTRLPRPIFDTQTASMLCEYH-------DNSVGYSKLV--EQFLGVKLN-----KLL 140
Query: 178 LRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS--LWYL 224
++ W++RPL+E VR A DDV +L +Y ++ L + W+L
Sbjct: 141 FKRVD--WSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKGRLTWFL 187
>gi|56416471|ref|YP_153545.1| ribonuclease D [Anaplasma marginale str. St. Maries]
gi|56387703|gb|AAV86290.1| ribonuclease D [Anaplasma marginale str. St. Maries]
Length = 401
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 37/169 (21%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESS---------YITKVIHDCKRDSEAL 117
LC++Q+A+ QGG+ VV L+ S I KV HDC++D +AL
Sbjct: 45 LCLLQMAY----------QGGQCVVDVLDERLDLSPLQEIFDDEGIYKVFHDCRQDLDAL 94
Query: 118 YFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVL 177
+F + DTQ A L E D+ + + L+ ++ G+ ++L
Sbjct: 95 SQRFTRLPRPIFDTQTASMLCEYH-------DNSVGYSKLV--EQFLGVKLN-----KLL 140
Query: 178 LRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN--QQSLWYL 224
++ W++RPL+E VR A DDV +L +Y ++ L ++ W+L
Sbjct: 141 FKRVD--WSHRPLSEGKVRYALDDVTYLHELYEVLLGILTAKERLTWFL 187
>gi|405975310|gb|EKC39884.1| hypothetical protein CGI_10016616 [Crassostrea gigas]
Length = 106
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 47 ERQLVIGFDCEGVDLCRHGSLCIMQLA-FPDAIYLVDAIQGGETVVKA-CKPALESSYIT 104
ER+ V+ DCEGV L G L ++Q+ + +YL D ++ + + + LES I
Sbjct: 23 ERERVLAVDCEGVSLGVDGPLTLIQVGNYSREVYLFDILRNKDLLSRGRLGTLLESPNII 82
Query: 105 KVIHDCKRDSEALYFQFGIKLHNV 128
KV C D ALY QF + L NV
Sbjct: 83 KVKQSCSNDIAALYHQFKVTLKNV 106
>gi|295666185|ref|XP_002793643.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277937|gb|EEH33503.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 270
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 44 PSSERQLVIGFDCEGVDLCRHGSLCIMQLAF--PDAIYLVDA-IQGGETVV------KAC 94
P+S L I D EG+ L R G + I+QL + +YLVD + G E K+
Sbjct: 27 PTSPPSLYI--DLEGISLSREGRISILQLFNHPKNHLYLVDIHVLGHEAFTTAAANGKSL 84
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
+ LES + KV D + DS A +F F I+L V D Q+
Sbjct: 85 RTILESPDVPKVFFDVRNDSNAFFFHFDIRLQGVEDIQL 123
>gi|342183638|emb|CCC93118.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 386
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 20/200 (10%)
Query: 27 PIHIVTNASQLPAEFLEPSSERQLVIGFD--CEGVDLCRHGSLCIMQLAFPDA---IYLV 81
P +V +L L + R + + + C + G + ++Q A DA ++L
Sbjct: 50 PYEVVDTEEKLNEAVLSLQNARSIALDIEAFCTTEQAKQLGRISLVQ-ACSDAKPVVFLF 108
Query: 82 DAIQ-GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEE 140
D I E V+ + L S I K+ DC+RD EAL Q GIK V+D Q+ ++ I+
Sbjct: 109 DIITLTSEVFVRRTQSLLRSKDIRKLFFDCRRDVEALSCQLGIKPEGVLDLQVFFTAIQW 168
Query: 141 Q-EG-RKRSPDDYISFVGLLADPRYCGISYQEKE---EVRVLLRQDPQFWTYRPLTELMV 195
+ G +RS Y+ G++ QE + + + L P W RPL + +
Sbjct: 169 KLRGVNRRSGMGYVL-------KSLTGLTRQEGDSAVQAAMTLGNRP-VWDIRPLPDHFL 220
Query: 196 RAAADDVRFLPYIYHNMMKK 215
AA DVR + + ++ K
Sbjct: 221 EYAAGDVRHILLLSSYLLAK 240
>gi|417953178|ref|ZP_12596226.1| ribonuclease D [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342817710|gb|EGU52587.1| ribonuclease D [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 389
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 29/213 (13%)
Query: 17 PDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFP 75
P+ + +V I+T +SQL E + S+ V+ D E V + L ++QL
Sbjct: 10 PETAHSEKLVNYQIITQSSQL--EEVCQSARNVDVVMLDTEFVRTRTYYPQLGLIQLFDG 67
Query: 76 DAIYLVDAIQGGETVVK---ACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQ 132
+ + L+D TV++ A L+ + + KV+H C D E + FG + +VDTQ
Sbjct: 68 EKLSLIDP-----TVIEDMTAFVELLKDTSVLKVLHACGEDLEVFHNSFGCLPYPMVDTQ 122
Query: 133 IAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
+ + + G S F L+ + Y G+ + E R D W RPL++
Sbjct: 123 LMAAFL----GHGLS----TGFAALVEN--YLGVELDKSES-----RTD---WLARPLSD 164
Query: 193 LMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ AA DV +L +Y + +K+ Q W A
Sbjct: 165 KQLEYAAADVYYLQPLYEQLFEKITQAGWWEAA 197
>gi|229815608|ref|ZP_04445935.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
gi|229808838|gb|EEP44613.1| hypothetical protein COLINT_02659 [Collinsella intestinalis DSM
13280]
Length = 377
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 22/161 (13%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
H LC++Q+A PD ++D + + + + KV H C +D E L G
Sbjct: 35 HAKLCLVQVATPDECVVIDPLAIDD--LGPLAELMTDVDTLKVFHACSQDMEVLCHALGS 92
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ DTQ+A + E R+ Y + V +CG+S + E +
Sbjct: 93 VPAPIFDTQVAAGFLGE-----RAQCSYHNLVST-----FCGVSLPKTESL--------T 134
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ--QSLW 222
W+ RPL+ + A DDVR+L Y + KL+ ++ W
Sbjct: 135 DWSRRPLSPKQIEYALDDVRYLIDAYRVIESKLHSLGRTAW 175
>gi|320594033|gb|EFX06436.1| hypothetical protein CMQ_6757 [Grosmannia clavigera kw1407]
Length = 218
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 21/107 (19%)
Query: 41 FLEPSSERQLVIGFDCEGVDLCRHGSLCIMQL--------------AFPDAIYLVDAIQG 86
+ +P++ L I D EGV L R G++ I+Q+ DA +L G
Sbjct: 54 YAQPTTPPSLYI--DLEGVYLFREGTVSILQVYVLPLGRAYLLDVHTLKDAAFLTPGTNG 111
Query: 87 GETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
+ K LESS I KV D + DS+AL+F F I L V D Q+
Sbjct: 112 -----RTLKDLLESSAIPKVFFDVRNDSDALFFHFKINLAGVQDLQL 153
>gi|257063921|ref|YP_003143593.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
gi|256791574|gb|ACV22244.1| ribonuclease D [Slackia heliotrinireducens DSM 20476]
Length = 392
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 27/192 (14%)
Query: 30 IVTNASQLPAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGE 88
++T +QL A F+E + + V+ D E + + LC++QLA P+ VD ++ +
Sbjct: 1 MITEQTQLDA-FVEHARAHK-VLAIDTEFMREKTYWPKLCLIQLATPERAVAVDPLRLHD 58
Query: 89 TVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSP 148
+ A + I K+ H ++D E + + G + DTQIA
Sbjct: 59 --LSALNVLFQDENILKLFHASRQDLEIINIEMGCLPAPIFDTQIA-------------- 102
Query: 149 DDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLP 206
LL G E+ V L++ + W+ RPLT+ ++ A DDV +LP
Sbjct: 103 ------AALLGHTTQIGYGPLVMNELGVHLKKADSYTDWSRRPLTKSQLQYALDDVIYLP 156
Query: 207 YIYHNMMKKLNQ 218
+Y +M +KL +
Sbjct: 157 KLYDSMSRKLKK 168
>gi|336471624|gb|EGO59785.1| hypothetical protein NEUTE1DRAFT_61517 [Neurospora tetrasperma FGSC
2508]
gi|350292737|gb|EGZ73932.1| hypothetical protein NEUTE2DRAFT_87661 [Neurospora tetrasperma FGSC
2509]
Length = 250
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 24/186 (12%)
Query: 54 FDCEGVDLCRHGSLCIMQLAFPD--AIYLVDAIQGGETVV-------KACKPALESSYIT 104
D EG +L RHG+L ++ + A +VD G++ K K LE + +
Sbjct: 28 LDLEGRNLSRHGTLTLLTILVLPTRATSIVDVQTLGDSAFTTPSPDGKTLKAILEDPHTS 87
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
K + D + D++AL+ I+L V D Q+ + G + Y+ + + R
Sbjct: 88 KCLWDVRNDADALWAHHKIRLAGVTDIQLL------ENGSRPGGKTYLFGLDRCIE-RDL 140
Query: 165 GISYQEKE-------EVRVLLRQ-DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ ++EK+ EVR L+ + ++ RPL ++ +DV +LP ++ K++
Sbjct: 141 SLRWEEKQPWARTKQEVRALMNMPNSDIFSRRPLDAKTLQYCVNDVVYLPALHKLYTKRI 200
Query: 217 NQQSLW 222
N+ S W
Sbjct: 201 NKSSGW 206
>gi|452823689|gb|EME30697.1| exosome complex exonuclease RRP6 [Galdieria sulphuraria]
Length = 736
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 19/158 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQ-GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFG 122
G +C++Q + ++VDAI+ G +K LE+ I KV+H D + L FG
Sbjct: 256 QGFICLLQFSTRQEDFVVDAIELRGH--LKMLSKILENGNILKVLHGADSDVQWLQRDFG 313
Query: 123 IKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
+ + ++ DT A + + P ++S LL RYC I + ++ L
Sbjct: 314 LYIVHMFDTGQASRQL-------KFP--FLSLSYLLK--RYCNIDNSKTKKYYQLAD--- 359
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL E M A D +L YIY + ++L Q S
Sbjct: 360 --WRIRPLPEDMFSYARQDTHYLLYIYDRLCEELRQSS 395
>gi|392340772|ref|XP_003754165.1| PREDICTED: exosome component 10-like isoform 2 [Rattus norvegicus]
gi|392348530|ref|XP_003750137.1| PREDICTED: exosome component 10-like isoform 2 [Rattus norvegicus]
Length = 860
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 34/203 (16%)
Query: 20 KPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLA 73
+P++ P H+V++ +L E E ++G VDL H G C+MQ++
Sbjct: 281 RPVEET-PCHVVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQIS 332
Query: 74 FPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
++VD ++ + +L I KV H D E L FG+ + N+ DT
Sbjct: 333 TRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391
Query: 134 AYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTEL 193
A L+ + S D + YCG+ ++ ++ W RPL E
Sbjct: 392 AARLLNLA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEE 432
Query: 194 MVRAAADDVRFLPYIYHNMMKKL 216
M+ A DD +L YIY M +L
Sbjct: 433 MLNYARDDTHYLLYIYDRMRLEL 455
>gi|281206812|gb|EFA80996.1| 3'-5' exonuclease [Polysphondylium pallidum PN500]
Length = 1011
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G +C+MQ++ ++VD + + +K + I KV+H +
Sbjct: 297 AVDLEAHNYRSFQGFVCLMQVSTRTEDFIVDTL-VLRSHMKMLNVPFTNPKIVKVLHGSE 355
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D + L FGI + N+ DT A ++E P ++F+ YCG+ +K
Sbjct: 356 SDVKWLQRDFGIYIVNMFDTGQASRILE-------YPSASLAFLLRF----YCGVDANKK 404
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RP+ E M++ A +D +L YIY + +L
Sbjct: 405 FQLAD--------WRIRPVPEEMIKYAREDTHYLLYIYDRLRNEL 441
>gi|389638638|ref|XP_003716952.1| hypothetical protein MGG_06583 [Magnaporthe oryzae 70-15]
gi|351642771|gb|EHA50633.1| hypothetical protein MGG_06583 [Magnaporthe oryzae 70-15]
gi|440474191|gb|ELQ42948.1| hypothetical protein OOU_Y34scaffold00182g18 [Magnaporthe oryzae
Y34]
gi|440484980|gb|ELQ64980.1| hypothetical protein OOW_P131scaffold00539g20 [Magnaporthe oryzae
P131]
Length = 394
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLAF--PDAIYLVDAIQGGETVVKAC------KPALESSY 102
V+ + EG +LCR G + ++ + +YLVD + GE K LES+
Sbjct: 107 VLYLNSEGANLCRDGDISVVAIFVEPKRHVYLVDVQELGEQAFNTTGSGTSLKQILESAD 166
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
+ KV D + D+ AL+ +GI+L V D Q+ + E+ R+
Sbjct: 167 VPKVFFDVRDDASALFGIYGIRLQGVQDVQLMENANREEWTRR 209
>gi|308482748|ref|XP_003103577.1| hypothetical protein CRE_28761 [Caenorhabditis remanei]
gi|308259998|gb|EFP03951.1| hypothetical protein CRE_28761 [Caenorhabditis remanei]
Length = 591
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 21/192 (10%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
+ I LA D I L +G LES + KVIHD +R + L ++ + +
Sbjct: 363 IGIFDLASSDVIILESGFKG----------ILESEKVVKVIHDARRVASLLAHKYAVHMR 412
Query: 127 NVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185
NV DTQ+A+SL++ + G+ ISF+ L Y S + + Q P W
Sbjct: 413 NVFDTQVAHSLLQHDKFGKSLHEMRPISFINL--QRVYYPQSIMLSDVTPRKMSQSPN-W 469
Query: 186 TYRPLTELMVRAAADDVR-FLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVD 244
RP+TE ++ L +Y + +L + +RG +C +N + +
Sbjct: 470 GVRPITEEFQLTIVEEAHCLLSALYQAL------SNLIPVHLRGLFEDKCIEVNHPEVLL 523
Query: 245 WPPLPPVPDYLI 256
P P P I
Sbjct: 524 ASPNRPPPQPFI 535
>gi|333985394|ref|YP_004514604.1| ribonuclease D [Methylomonas methanica MC09]
gi|333809435|gb|AEG02105.1| ribonuclease D [Methylomonas methanica MC09]
Length = 385
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 32/158 (20%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSY---ITKVIHDCKRDSEALYFQFGI 123
C++Q+A P + VD + + P + Y I KV+H C++D E ++FQ
Sbjct: 41 FCLLQIAAPGWVACVDPL-----AIDDLSPLFDVIYNPEIVKVLHSCRQDLE-IFFQITG 94
Query: 124 KLHN-VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGI--SYQEKEEVRVLLRQ 180
++ + DTQIA L+ QE +P Y + S+ + R
Sbjct: 95 RIPGPIFDTQIAAPLLGFQE-----------------NPGYAMLVSSFLNINLSKAHTRT 137
Query: 181 DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
D WT RPL+E ++ AADDV +L IY M ++L +
Sbjct: 138 D---WTQRPLSEDQIQYAADDVIYLCKIYTTMCEQLEK 172
>gi|392340770|ref|XP_003754164.1| PREDICTED: exosome component 10-like isoform 1 [Rattus norvegicus]
gi|392348528|ref|XP_003750136.1| PREDICTED: exosome component 10-like isoform 1 [Rattus norvegicus]
gi|149024626|gb|EDL81123.1| rCG30986, isoform CRA_a [Rattus norvegicus]
Length = 885
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 85/203 (41%), Gaps = 34/203 (16%)
Query: 20 KPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLA 73
+P++ P H+V++ +L E E ++G VDL H G C+MQ++
Sbjct: 281 RPVEET-PCHVVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQIS 332
Query: 74 FPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
++VD ++ + +L I KV H D E L FG+ + N+ DT
Sbjct: 333 TRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391
Query: 134 AYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTEL 193
A L+ + S D + YCG+ ++ ++ W RPL E
Sbjct: 392 AARLLNLA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEE 432
Query: 194 MVRAAADDVRFLPYIYHNMMKKL 216
M+ A DD +L YIY M +L
Sbjct: 433 MLNYARDDTHYLLYIYDRMRLEL 455
>gi|322417808|ref|YP_004197031.1| 3'-5' exonuclease [Geobacter sp. M18]
gi|320124195|gb|ADW11755.1| 3'-5' exonuclease [Geobacter sp. M18]
Length = 377
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 24/189 (12%)
Query: 29 HIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHG-SLCIMQLAFPDAIYLVDAIQGG 87
H+VT+ L E +E S ++ V+ FD E L + +C++Q++ L+D +
Sbjct: 14 HLVTDQKTLD-ELVERLS-KESVLAFDLEADSLHHYTEKVCLIQVSSESENRLIDPL--A 69
Query: 88 ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRS 147
V+ P + I K+ H D +LY FGI++ N+ DT IA + E E
Sbjct: 70 PIDVRVLAPIFANPAIKKIFHGADYDMRSLYRDFGIEVVNLFDTMIASQFLGESE----- 124
Query: 148 PDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207
LL + G+ + R W+ RP ++ M+ A D L
Sbjct: 125 ----FGLAALL--KKRFGVELDK--------RYQKADWSKRPFSQEMLEYAMKDTSLLIE 170
Query: 208 IYHNMMKKL 216
+Y + +L
Sbjct: 171 LYRQLEAEL 179
>gi|74187922|dbj|BAE37100.1| unnamed protein product [Mus musculus]
Length = 497
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 33/197 (16%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIY 79
P H+V++ +L E E ++G VDL H G C+MQ++ +
Sbjct: 286 TPCHLVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDF 338
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
+VD ++ + + +L I KV H D E L FG+ + N+ DT A L+
Sbjct: 339 IVDTLEL-RSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 397
Query: 140 EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
+ S D + YCG+ ++ ++ W RPL E M+ A
Sbjct: 398 LA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEEMLSYAR 438
Query: 200 DDVRFLPYIYHNMMKKL 216
DD +L YIY M +L
Sbjct: 439 DDTHYLLYIYDRMRLEL 455
>gi|393241161|gb|EJD48684.1| hypothetical protein AURDEDRAFT_112824 [Auricularia delicata
TFB-10046 SS5]
Length = 371
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 14/165 (8%)
Query: 55 DCEGVDL-CRHGSLCIMQL--AFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
DCEG DL C G L ++ + AF + ++L D ++ + ++ L K + D +
Sbjct: 26 DCEGRDLGCAGGQLSVISVGTAFAEHVFLFDVLRLKRSALRPVVDLLRDDKQIKYVWDGR 85
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSL---IEEQEGRKR-SPDDYISFVGL---LADPRYC 164
D+ L FG+ +D QIA L I QE +K P S VGL L R
Sbjct: 86 MDNIELQRAFGVPFGRTIDLQIADVLSRKIRAQEAKKHFDPWGVHSLVGLKNALEQHRIL 145
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
E + ++V + W RPL ++ A D+ L YIY
Sbjct: 146 QDPDGEDDTIQV----NHTEWMLRPLPPTYLQYAERDILLLAYIY 186
>gi|308455848|ref|XP_003090418.1| hypothetical protein CRE_16505 [Caenorhabditis remanei]
gi|308264027|gb|EFP07980.1| hypothetical protein CRE_16505 [Caenorhabditis remanei]
Length = 591
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 21/192 (10%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
+ I LA D I L +G LES + KVIHD +R + L ++ + +
Sbjct: 363 IGIFDLASSDVIILESGFKG----------ILESEKVVKVIHDARRVASLLAHKYAVHMR 412
Query: 127 NVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185
NV DTQ+A+SL++ + G+ ISF+ L Y S + + Q P W
Sbjct: 413 NVFDTQVAHSLLQHDKFGKSLHEMRPISFINL--QRVYYPQSIMLSDVTPRKMSQSPN-W 469
Query: 186 TYRPLTELMVRAAADDVR-FLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVD 244
RP+TE ++ L +Y + +L + +RG +C +N + +
Sbjct: 470 GVRPITEEFQLTIVEEAHCLLSALYQAL------SNLIPVHLRGLFEDKCIEVNHPEVLL 523
Query: 245 WPPLPPVPDYLI 256
P P P I
Sbjct: 524 ASPNRPPPQPFI 535
>gi|118497275|ref|YP_898325.1| ribonuclease D [Francisella novicida U112]
gi|194323578|ref|ZP_03057355.1| ribonuclease D [Francisella novicida FTE]
gi|208779068|ref|ZP_03246414.1| ribonuclease D [Francisella novicida FTG]
gi|118423181|gb|ABK89571.1| ribonuclease D [Francisella novicida U112]
gi|194322433|gb|EDX19914.1| ribonuclease D [Francisella tularensis subsp. novicida FTE]
gi|208744868|gb|EDZ91166.1| ribonuclease D [Francisella novicida FTG]
Length = 364
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 38 LCLVQLATENEIFLIDTLEDLE--FKKLKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 136 WRNRPLTQNQLNYAIKDVEYL 156
>gi|12856957|dbj|BAB30844.1| unnamed protein product [Mus musculus]
Length = 705
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 33/197 (16%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIY 79
P H+V++ +L E E ++G VDL H G C+MQ++ +
Sbjct: 263 TPCHLVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDF 315
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
+VD ++ + + +L I KV H D E L FG+ + N+ DT A L+
Sbjct: 316 IVDTLEL-RSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 374
Query: 140 EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
+ S D + YCG+ ++ ++ W RPL E M+ A
Sbjct: 375 LA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEEMLSYAR 415
Query: 200 DDVRFLPYIYHNMMKKL 216
DD +L YIY M +L
Sbjct: 416 DDTHYLLYIYDRMRLEL 432
>gi|254372648|ref|ZP_04988137.1| ribonuclease III [Francisella tularensis subsp. novicida GA99-3549]
gi|151570375|gb|EDN36029.1| ribonuclease III [Francisella novicida GA99-3549]
Length = 364
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 38 LCLVQLATENEIFLIDTLKDLE--FKKLKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 136 WRNRPLTQNQLNYAIKDVEYL 156
>gi|336366156|gb|EGN94504.1| hypothetical protein SERLA73DRAFT_188440 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378823|gb|EGO19980.1| hypothetical protein SERLADRAFT_478548 [Serpula lacrymans var.
lacrymans S7.9]
Length = 341
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 32/193 (16%)
Query: 54 FDCEGVDLCRHG---SLCIMQLAFPDAIYLVDAIQGGET--VVKACKPALESSYITKVIH 108
DCEG ++ R G SL + A I++ DA+ + V++ L S Y+TKV+
Sbjct: 31 LDCEGKNIGRIGGVLSLLCIGTARAQHIFIFDALALNQDDPAVQSLLWLLSSPYVTKVMW 90
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
D ++D ++ ++GI L ++D Q+ ++ + R + ++ + P S
Sbjct: 91 DGRQDFLEIWDKYGITLGKILDLQLV-EVVSRKTVRHEDENKRVARIAGRCLPWKVVKSN 149
Query: 169 QEK-EEVRVLL--------------RQDPQ-----------FWTYRPLTELMVRAAADDV 202
+E + + V+L +DP+ W RPL+ ++R AA+D+
Sbjct: 150 RELCQNIHVVLGMQGCFQENKLPFTGKDPEVVAMHKANGSGLWLDRPLSAKLLRYAANDI 209
Query: 203 RFLPYIYHNMMKK 215
R + +Y N +K
Sbjct: 210 RMIAMLYVNFSQK 222
>gi|254374109|ref|ZP_04989591.1| ribonuclease D [Francisella novicida GA99-3548]
gi|151571829|gb|EDN37483.1| ribonuclease D [Francisella novicida GA99-3548]
Length = 364
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 38 LCLVQLATENEIFLIDTLKDLE--FKKLKEIFEDKDIIKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 136 WRNRPLTQNQLNYAIKDVEYL 156
>gi|6018181|gb|AAF01781.1| P100 polymyositis-scleroderma overlap syndrome associated
autoantigen homolog [Mus musculus]
Length = 831
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 33/197 (16%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIY 79
P H+V++ +L E E ++G VDL H G C+MQ++ +
Sbjct: 286 TPCHLVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDF 338
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
+VD ++ + +L I KV H D E L FG+ + N+ DT A L+
Sbjct: 339 IVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL- 396
Query: 140 EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
R D++ + YCG+ ++ ++ W RPL E M+ A
Sbjct: 397 ---NLARHSLDHLLRL-------YCGVESNKQYQLAD--------WRIRPLPEEMLSYAR 438
Query: 200 DDVRFLPYIYHNMMKKL 216
DD +L YIY M +L
Sbjct: 439 DDTHYLLYIYDRMRLEL 455
>gi|321465482|gb|EFX76483.1| hypothetical protein DAPPUDRAFT_226045 [Daphnia pulex]
Length = 544
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 49 QLVIGFDCEG-VDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVI 107
Q VIG D E D G C+MQ++ Y++D +Q + + K + + I K+
Sbjct: 116 QTVIGVDLEHHSDRSYRGITCLMQISTDKTDYIIDTLQLWDHLQPLNKVFCDPN-IVKIF 174
Query: 108 HDCKRDSEALYFQ--FGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
DS+ ++ Q FGI + N+ DT A SL+ Q+ LL YC
Sbjct: 175 QGA--DSDVIWLQRDFGIYVVNLFDTLQAASLLGFQKK---------GLYFLLQ--HYCQ 221
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ +K ++ W RPL + MV+ A +D +L YIY M + L
Sbjct: 222 VHVNKKYQL--------ADWRIRPLPQEMVKYAREDTHYLIYIYERMKQDL 264
>gi|393216490|gb|EJD01980.1| hypothetical protein FOMMEDRAFT_157145 [Fomitiporia mediterranea
MF3/22]
Length = 324
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 52 IGFDCEGVDL-CRHGSLCIMQLAFPDA--IYLVD-------AIQGGETVVKACKPALESS 101
I DCEG DL G+L ++ L P A I+L D A+Q V + PA +
Sbjct: 24 IILDCEGRDLGSASGALSLISLGTPHASDIFLFDILLLPHHALQILFNAVLSLTPAARAK 83
Query: 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADP 161
TKV+ D + D L+F + + NV+D Q+A L + G ++ + + A P
Sbjct: 84 --TKVVWDGRMDYSELFFSYTCPIENVLDLQLADILSRAKRG--QNDKQRLDRLSRRAFP 139
Query: 162 RYCGISYQEKEEVRVLLRQDPQFWTYRPL-TELMVRAAADDVR----FLPYIYHNMMKKL 216
R I + EEV L D RPL +EL+ AA+D VR + ++ H ++ +
Sbjct: 140 R-SEIRKLQLEEVHALNGMDGA----RPLSSELLSYAASDIVRIAGLYDHFLGHGYLEPM 194
Query: 217 NQQSLWYLAVR 227
Q LW L+ R
Sbjct: 195 EQ--LWELSAR 203
>gi|20381286|gb|AAH27840.1| Exosc10 protein [Mus musculus]
Length = 862
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 33/197 (16%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIY 79
P H+V++ +L E E ++G VDL H G C+MQ++ +
Sbjct: 286 TPCHLVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDF 338
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
+VD ++ + +L I KV H D E L FG+ + N+ DT A L+
Sbjct: 339 IVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 397
Query: 140 EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
+ S D + YCG+ ++ ++ W RPL E M+ A
Sbjct: 398 LA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEEMLSYAR 438
Query: 200 DDVRFLPYIYHNMMKKL 216
DD +L YIY M +L
Sbjct: 439 DDTHYLLYIYDRMRLEL 455
>gi|145485444|ref|XP_001428730.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395818|emb|CAK61332.1| unnamed protein product [Paramecium tetraurelia]
Length = 669
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 38/180 (21%)
Query: 53 GFDCEGVDLCRHGSL------CIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKV 106
GF VDL + S+ C++QL+ Y++D + + + I KV
Sbjct: 216 GFSEIAVDLEHNHSISYLGVTCLIQLSTRTQDYIIDPFPLWKQLGDMLSVVFTNPRIVKV 275
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDT-QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
H D + L FG+ + N+ DT Q + L+ Q SF LL++ YC
Sbjct: 276 FHGADNDVQWLQRDFGLYIVNLFDTFQASKELLLMQN----------SFQFLLSE--YCK 323
Query: 166 IS----YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---MKKLNQ 218
S YQ + WT RPL++ M++ A D +L YIY M +KKLN+
Sbjct: 324 KSTDKTYQTAD------------WTQRPLSDEMIKYAQIDTHYLLYIYDRMRQDLKKLNK 371
>gi|57340046|gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
Length = 399
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 64 LCLVQLATENEIFLIDTLKDLE--FKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN 121
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 122 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 161
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 162 WRNRPLTQNQLNYAIKDVEYL 182
>gi|89256742|ref|YP_514104.1| ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115315142|ref|YP_763865.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|254368041|ref|ZP_04984061.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|422939063|ref|YP_007012210.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
gi|89144573|emb|CAJ79888.1| Ribonuclease D [Francisella tularensis subsp. holarctica LVS]
gi|115130041|gb|ABI83228.1| ribonuclease III [Francisella tularensis subsp. holarctica OSU18]
gi|134253851|gb|EBA52945.1| ribonuclease D [Francisella tularensis subsp. holarctica 257]
gi|407294214|gb|AFT93120.1| ribonuclease D [Francisella tularensis subsp. holarctica FSC200]
Length = 364
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 38 LCLVQLATENEIFLIDTLKDLE--FKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 136 WRNRPLTQNQLNYAIKDVEYL 156
>gi|385792618|ref|YP_005825594.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676764|gb|AEB27634.1| Ribonuclease D [Francisella cf. novicida Fx1]
Length = 364
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 38 LCLVQLATENEIFLIDTLKDLE--FKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 136 WRNRPLTQNQLNYAIKDVEYL 156
>gi|156502902|ref|YP_001428967.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|290953633|ref|ZP_06558254.1| ribonuclease D [Francisella tularensis subsp. holarctica URFT1]
gi|423051113|ref|YP_007009547.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
gi|156253505|gb|ABU62011.1| ribonuclease D [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|421951835|gb|AFX71084.1| ribonuclease D [Francisella tularensis subsp. holarctica F92]
Length = 363
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 38 LCLVQLATENEIFLIDTLKDLE--FKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 136 WRNRPLTQNQLNYAIKDVEYL 156
>gi|212545983|ref|XP_002153145.1| hypothetical protein PMAA_010410 [Talaromyces marneffei ATCC 18224]
gi|210064665|gb|EEA18760.1| hypothetical protein PMAA_010410 [Talaromyces marneffei ATCC 18224]
Length = 285
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 43/193 (22%)
Query: 54 FDCEGVDLCRHGSLCIMQLAFP--DAIYLVDAIQGGETVV-------KACKPALESSYIT 104
FD EGV L R+G++ I+ + + +YL+D E + K LE+ I
Sbjct: 34 FDLEGVRLGRNGTISIISVFIQPLNQVYLIDVFTLSEKAFLITNDKQTSLKTILEAPSIP 93
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIA-----YSLIEEQEGRKRSPDDYISF----- 154
KV D + DS+A+ GI+L V D Q+ + + G + +++ +
Sbjct: 94 KVFFDVRNDSDAMCSHHGIRLQCVKDLQVMELAVRFGSQKYVAGLAKCIENHANLPPIEL 153
Query: 155 ---------VGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
VG L DPR G SY Q + RP+ +++ A DV L
Sbjct: 154 QKWKQIKASVGQLWDPRRGG-SY--------------QVFNQRPIRTDIIQYCAQDVTIL 198
Query: 206 PYIYHNMMKKLNQ 218
P +++ +KL Q
Sbjct: 199 PSLWNVYHQKLRQ 211
>gi|85106391|ref|XP_962175.1| hypothetical protein NCU07036 [Neurospora crassa OR74A]
gi|28923773|gb|EAA32939.1| predicted protein [Neurospora crassa OR74A]
Length = 232
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 85/182 (46%), Gaps = 24/182 (13%)
Query: 54 FDCEGVDLCRHGSLCIMQLAFPD--AIYLVDAIQGGETVV-------KACKPALESSYIT 104
D EG +LCRHG+L ++ + A +VD G++ K K LE + +
Sbjct: 28 LDLEGKNLCRHGTLTLLTILVLPTRATSIVDVQTLGDSAFTTPGPDGKTLKTILEDPHTS 87
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
K + D + D++AL+ I+L V D Q+ + G + Y+ + + +
Sbjct: 88 KCLWDVRNDADALWAHHKIRLAGVTDIQLL------ENGSRPGGKTYLFGLDRCIE-KDL 140
Query: 165 GISYQE-------KEEVRVLLRQ-DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ ++E K+EVR L+ + ++ RPL ++ +DV +LP +++ K++
Sbjct: 141 SLRWEEKQPWARTKQEVRALMNMPNSDIFSRRPLDAKTLQYCVNDVVYLPALHNLYTKRI 200
Query: 217 NQ 218
N+
Sbjct: 201 NK 202
>gi|134302344|ref|YP_001122313.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752196|ref|ZP_16189228.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|421754061|ref|ZP_16191044.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|421757785|ref|ZP_16194655.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|421759628|ref|ZP_16196457.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|424674949|ref|ZP_18111861.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
gi|134050121|gb|ABO47192.1| putative ribonuclease D [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409085560|gb|EKM85698.1| ribonuclease D [Francisella tularensis subsp. tularensis 831]
gi|409085718|gb|EKM85850.1| ribonuclease D [Francisella tularensis subsp. tularensis AS_713]
gi|409090457|gb|EKM90474.1| ribonuclease D [Francisella tularensis subsp. tularensis 70102010]
gi|409091730|gb|EKM91720.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700103]
gi|417434204|gb|EKT89163.1| ribonuclease D [Francisella tularensis subsp. tularensis 70001275]
Length = 364
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 38 LCLVQLATENEIFLIDTLKDLE--FKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 136 WRNRPLTQNQLNYAIKDVEYL 156
>gi|354502292|ref|XP_003513221.1| PREDICTED: exosome component 10 isoform 2 [Cricetulus griseus]
Length = 860
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 34/203 (16%)
Query: 20 KPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLA 73
+P++ P H V+ QL E E ++G VDL H G C+MQ++
Sbjct: 281 RPVEET-PCHFVSTLDQL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQIS 332
Query: 74 FPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
+++D ++ + +L I KV H D E L FG+ + N+ DT
Sbjct: 333 TRTEDFILDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391
Query: 134 AYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTEL 193
A L+ R D++ + YCG+ ++ ++ W RPL E
Sbjct: 392 AARLL----NLARHSLDHLLRL-------YCGVESNKQYQLAD--------WRIRPLPEE 432
Query: 194 MVRAAADDVRFLPYIYHNMMKKL 216
M+ A DD +L YIY M +L
Sbjct: 433 MLNYARDDTHYLLYIYDRMRLEL 455
>gi|308810304|ref|XP_003082461.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
(ISS) [Ostreococcus tauri]
gi|116060929|emb|CAL57407.1| Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6)
(ISS) [Ostreococcus tauri]
Length = 701
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ + ++VD + V A A KV+H
Sbjct: 142 AVDLEHHSYRSFKGFTCLMQVSTREKDFVVDVLALRSLVRDALGKAFADPNTLKVMHGAD 201
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D + L FGI + + DT A ++E P +++ LL YCGI +K
Sbjct: 202 NDVQWLQKDFGIFVSCLFDTGQAARVLE-------LPSKALAY--LLQ--HYCGIKANKK 250
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALY 231
++ W RPLT M+ A D +L Y+Y + K LA RG
Sbjct: 251 FQL--------ADWRVRPLTREMLDYARGDTHYLLYVYDELKKA--------LAARGENS 294
Query: 232 CRCFCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVP 273
D LPP D D+ + L+ L+ P
Sbjct: 295 IAATLTQSRDVCLKKYLPPTFDEGSYYEDLLKTNNLTNLNDP 336
>gi|354502290|ref|XP_003513220.1| PREDICTED: exosome component 10 isoform 1 [Cricetulus griseus]
Length = 885
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 34/203 (16%)
Query: 20 KPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLA 73
+P++ P H V+ QL E E ++G VDL H G C+MQ++
Sbjct: 281 RPVEET-PCHFVSTLDQL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQIS 332
Query: 74 FPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
+++D ++ + +L I KV H D E L FG+ + N+ DT
Sbjct: 333 TRTEDFILDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 391
Query: 134 AYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTEL 193
A L+ R D++ + YCG+ ++ ++ W RPL E
Sbjct: 392 AARLL----NLARHSLDHLLRL-------YCGVESNKQYQLAD--------WRIRPLPEE 432
Query: 194 MVRAAADDVRFLPYIYHNMMKKL 216
M+ A DD +L YIY M +L
Sbjct: 433 MLNYARDDTHYLLYIYDRMRLEL 455
>gi|187931952|ref|YP_001891937.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
gi|187712861|gb|ACD31158.1| ribonuclease D [Francisella tularensis subsp. mediasiatica FSC147]
Length = 364
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 38 LCLVQLATENEIFLIDTLKDLE--FKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 136 WRNRPLTQNQLNYAIKDVEYL 156
>gi|148682875|gb|EDL14822.1| exosome component 10, isoform CRA_a [Mus musculus]
Length = 916
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 33/197 (16%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIY 79
P H+V++ +L E E ++G VDL H G C+MQ++ +
Sbjct: 289 TPCHLVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDF 341
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
+VD ++ + + +L I KV H D E L FG+ + N+ DT A L+
Sbjct: 342 IVDTLEL-RSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 400
Query: 140 EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
+ S D + YCG+ ++ ++ W RPL E M+ A
Sbjct: 401 LA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEEMLSYAR 441
Query: 200 DDVRFLPYIYHNMMKKL 216
DD +L YIY M +L
Sbjct: 442 DDTHYLLYIYDRMRLEL 458
>gi|156361913|ref|XP_001625528.1| predicted protein [Nematostella vectensis]
gi|156212365|gb|EDO33428.1| predicted protein [Nematostella vectensis]
Length = 552
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G +C+MQ++ D +LVD ++ + + + I KV H
Sbjct: 273 AVDLEHHSYRSFLGFVCLMQISTRDHDFLVDTLELRNDL-HLLNESFTNPNILKVFHGAD 331
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L FGI + N+ DT A ++ + S LL ++CG++ ++
Sbjct: 332 MDVGWLQRDFGIYVVNMFDTGQASRVLALER---------FSLAFLLK--KFCGVTADKQ 380
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+R A +D +L YI+ + +L
Sbjct: 381 YQL--------ADWRIRPLPEEMIRYAREDTHYLLYIHDRLRNEL 417
>gi|20071218|gb|AAH27326.1| Exosome component 10 [Mus musculus]
Length = 887
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 33/197 (16%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIY 79
P H+V++ +L E E ++G VDL H G C+MQ++ +
Sbjct: 286 TPCHLVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDF 338
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
+VD ++ + +L I KV H D E L FG+ + N+ DT A L+
Sbjct: 339 IVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 397
Query: 140 EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
+ S D + YCG+ ++ ++ W RPL E M+ A
Sbjct: 398 LA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEEMLSYAR 438
Query: 200 DDVRFLPYIYHNMMKKL 216
DD +L YIY M +L
Sbjct: 439 DDTHYLLYIYDRMRLEL 455
>gi|56707887|ref|YP_169783.1| ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110670358|ref|YP_666915.1| ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|254370381|ref|ZP_04986386.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254874700|ref|ZP_05247410.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|379717133|ref|YP_005305469.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|379725737|ref|YP_005317923.1| ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|385794536|ref|YP_005830942.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|421755410|ref|ZP_16192356.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella tularensis subsp. tularensis SCHU S4]
gi|110320691|emb|CAL08792.1| Ribonuclease D [Francisella tularensis subsp. tularensis FSC198]
gi|151568624|gb|EDN34278.1| hypothetical protein FTBG_00144 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840699|gb|EET19135.1| ribonuclease D [Francisella tularensis subsp. tularensis MA00-2987]
gi|282159071|gb|ADA78462.1| Ribonuclease D [Francisella tularensis subsp. tularensis NE061598]
gi|377827186|gb|AFB80434.1| Ribonuclease D [Francisella tularensis subsp. tularensis TI0902]
gi|377828810|gb|AFB78889.1| Ribonuclease D [Francisella tularensis subsp. tularensis TIGB03]
gi|409088212|gb|EKM88289.1| ribonuclease D [Francisella tularensis subsp. tularensis 80700075]
Length = 364
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 38 LCLVQLATENEIFLIDTLKDLE--FKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 136 WRNRPLTQNQLNYAIKDVEYL 156
>gi|148682876|gb|EDL14823.1| exosome component 10, isoform CRA_b [Mus musculus]
Length = 864
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 33/197 (16%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIY 79
P H+V++ +L E E ++G VDL H G C+MQ++ +
Sbjct: 288 TPCHLVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDF 340
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
+VD ++ + + +L I KV H D E L FG+ + N+ DT A L+
Sbjct: 341 IVDTLEL-RSDMYILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 399
Query: 140 EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
+ S D + YCG+ ++ ++ W RPL E M+ A
Sbjct: 400 LA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEEMLSYAR 440
Query: 200 DDVRFLPYIYHNMMKKL 216
DD +L YIY M +L
Sbjct: 441 DDTHYLLYIYDRMRLEL 457
>gi|227116266|ref|NP_057908.2| exosome component 10 [Mus musculus]
gi|341940669|sp|P56960.2|EXOSX_MOUSE RecName: Full=Exosome component 10; AltName: Full=Autoantigen
PM/Scl 2 homolog; AltName: Full=Polymyositis/scleroderma
autoantigen 2 homolog
Length = 887
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 33/197 (16%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIY 79
P H+V++ +L E E ++G VDL H G C+MQ++ +
Sbjct: 286 TPCHLVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDF 338
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
+VD ++ + +L I KV H D E L FG+ + N+ DT A L+
Sbjct: 339 IVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 397
Query: 140 EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
+ S D + YCG+ ++ ++ W RPL E M+ A
Sbjct: 398 LA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEEMLSYAR 438
Query: 200 DDVRFLPYIYHNMMKKL 216
DD +L YIY M +L
Sbjct: 439 DDTHYLLYIYDRMRLEL 455
>gi|6018165|gb|AAF01779.1|AF091392_1 P100 polymyositis-scleroderma overlap syndrome associated
autoantigen homolog [Mus musculus]
gi|74184429|dbj|BAE25741.1| unnamed protein product [Mus musculus]
gi|148682877|gb|EDL14824.1| exosome component 10, isoform CRA_c [Mus musculus]
Length = 887
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 33/197 (16%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIY 79
P H+V++ +L E E ++G VDL H G C+MQ++ +
Sbjct: 286 TPCHLVSSLDEL-VELNEK------LLGCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDF 338
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE 139
+VD ++ + +L I KV H D E L FG+ + N+ DT A L+
Sbjct: 339 IVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLN 397
Query: 140 EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAA 199
+ S D + YCG+ ++ ++ W RPL E M+ A
Sbjct: 398 LA---RHSLDHLLRL--------YCGVESNKQYQLAD--------WRIRPLPEEMLSYAR 438
Query: 200 DDVRFLPYIYHNMMKKL 216
DD +L YIY M +L
Sbjct: 439 DDTHYLLYIYDRMRLEL 455
>gi|355686789|gb|AER98187.1| exosome component 10 [Mustela putorius furo]
Length = 732
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 187 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGAD 245
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YCG+ ++
Sbjct: 246 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCGVESNKQ 294
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 295 YQLAD--------WRIRPLPEEMLHYARDDTHYLLYIYDKMRLEL 331
>gi|224370825|ref|YP_002604989.1| Rnd [Desulfobacterium autotrophicum HRM2]
gi|223693542|gb|ACN16825.1| Rnd [Desulfobacterium autotrophicum HRM2]
Length = 377
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 26/171 (15%)
Query: 52 IGFDCEGVDLCRH--GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
+ FD E D H +C++Q+A P+ ++VD + + V KP E ITKV H
Sbjct: 26 LAFDLEA-DSMHHFKEKVCLVQMADPNDSFVVDPLSIDDLSV--LKPVFEDPAITKVFHG 82
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYI-SFVGLLADPRYCGISY 168
D +L F I ++N+ DT+IA + Q KRS + L D R+
Sbjct: 83 SDFDIRSLDRDFDIHVNNLFDTEIACRFLGIQ---KRSLAALLEKHFDLTLDKRFQKTD- 138
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W+ RPL++ M+ + +DV +L + + K+L +
Sbjct: 139 ----------------WSRRPLSKEMIAYSVNDVAYLLELSDILKKRLEDE 173
>gi|268537368|ref|XP_002633820.1| Hypothetical protein CBG19850 [Caenorhabditis briggsae]
Length = 574
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 14/211 (6%)
Query: 51 VIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKA-CKPALESSYITKVI 107
V+G D + V + G L + +A I + D ++++ K LES + KVI
Sbjct: 317 VVGLDLKTVTVGVDGEIFLSLGVIATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLLADPRYCGI 166
HD +R + L ++ + + NV DTQ+A+SL++ + G+ I+F+ L Y
Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHDKFGKPVHEMRPITFINL--QRVYYPQ 434
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR-FLPYIYHNMMKKLNQQSLWYLA 225
S + + Q P W RP+TE ++ L +Y + +L +
Sbjct: 435 SLMLSDVTPRKMSQSPN-WGVRPITEEFQLTIVEEAHCLLSALYQAL------SNLIPVH 487
Query: 226 VRGALYCRCFCINENDYVDWPPLPPVPDYLI 256
+RG +C +N + + P P P I
Sbjct: 488 LRGLFEDKCIEVNHPEVLLASPNRPPPQPFI 518
>gi|339717675|pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
gi|339717676|pdb|3SAH|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
Y436a Mutation In The Catalytic Site
Length = 428
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 26/161 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L I KV H
Sbjct: 133 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 191
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 192 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVDSNKQ 240
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
++ W RPL E M+ AA DD +L YIY M
Sbjct: 241 YQLAD--------WRIRPLPEEMLSAARDDTHYLLYIYDKM 273
>gi|281349256|gb|EFB24840.1| hypothetical protein PANDA_011805 [Ailuropoda melanoleuca]
Length = 834
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLEL-RSEMYILNESLTDPSIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YCG+ ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCGVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLEL 455
>gi|393245591|gb|EJD53101.1| hypothetical protein AURDEDRAFT_180678 [Auricularia delicata
TFB-10046 SS5]
Length = 365
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 111/253 (43%), Gaps = 31/253 (12%)
Query: 4 SPSHQTHIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-C 62
+ + QT P + + ID V P+ + A++L E + I DCEG L
Sbjct: 10 AENQQTLPPAADQARERAID-VPPVQFLHVANELALEDAVRELKYATHIFLDCEGYQLGA 68
Query: 63 RHGSLCIMQLAF-PDAI-YLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQ 120
GS+ ++ ++ PD + Y+VDA ++ + I KV+ D + D+
Sbjct: 69 VGGSMSLINVSCGPDGVVYVVDATCFERDALEPLFELFRNPEIKKVMFDGRMDASEFMHG 128
Query: 121 FGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR--------YCGISYQEK- 171
+ I+L V+D Q+A I + R P + ++ + PR Y G+
Sbjct: 129 YNIELEGVLDMQLAD--ITGRYMRGEGPREQLARLRPFIHPRDMIGHESDYLGVHRLNGL 186
Query: 172 ----EEVRV-LLRQDPQF---WTYRPLTELMVRAAADDVRFLPYIYHNMMKK-------L 216
EE R+ ++R++ + W RPL M+ AAA DV ++ ++ + + + L
Sbjct: 187 VKCMEEFRLPVVRRNEAYHNRWQERPLPNAMLLAAARDVCYIRTLWEHFISRGWVSQGEL 246
Query: 217 NQQSLWYLA-VRG 228
QS Y+A VRG
Sbjct: 247 EAQSARYVALVRG 259
>gi|75675781|ref|YP_318202.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
gi|74420651|gb|ABA04850.1| ribonuclease D [Nitrobacter winogradskyi Nb-255]
Length = 382
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD +VDA+ GG +K + + + KV H ++D E ++ Q G+ H
Sbjct: 39 LCVIQLASPDEAVVVDALAGG-IDLKPFFALMSNESVLKVFHAARQDIEIIWHQAGLIPH 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
V DTQ+A ++ D I++ L+ R G + W+
Sbjct: 98 PVFDTQVAAMVL--------GHGDSIAYDALV--ERITGHRPDKTHRF--------TDWS 139
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
RPLT + A DV L ++ + L+++
Sbjct: 140 RRPLTAEQLEYAVADVTHLRDVFAALDADLSKR 172
>gi|344943543|ref|ZP_08782830.1| ribonuclease D [Methylobacter tundripaludum SV96]
gi|344260830|gb|EGW21102.1| ribonuclease D [Methylobacter tundripaludum SV96]
Length = 389
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
+ C++Q+A P+ + +D I + A+ S I KV H C++D E Y G
Sbjct: 40 YPKFCLLQIATPEWVACIDPI--ALPSLDILFEAIYSPSIVKVFHSCRQDLEIFYQLTGK 97
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ DTQIA L+ QE Y V L + + R D
Sbjct: 98 LPEPLFDTQIAAPLLGFQEN-----PGYAMLVSSLLNVNLN----------KAHTRAD-- 140
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W+ RPL + ++ AADDV +L IY M++KL
Sbjct: 141 -WSKRPLIDAEIQYAADDVIYLCKIYQMMLQKL 172
>gi|301774745|ref|XP_002922791.1| PREDICTED: exosome component 10-like isoform 1 [Ailuropoda
melanoleuca]
Length = 885
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + + +L I KV H
Sbjct: 334 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLEL-RSEMYILNESLTDPSIVKVFHGAD 392
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YCG+ ++
Sbjct: 393 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCGVESNKQ 441
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 442 YQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLEL 478
>gi|71982768|ref|NP_001021323.1| Protein EGAL-1, isoform a [Caenorhabditis elegans]
gi|351049691|emb|CCD63389.1| Protein EGAL-1, isoform a [Caenorhabditis elegans]
Length = 574
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 18/213 (8%)
Query: 51 VIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKA-CKPALESSYITKVI 107
V+G D + V + G L + +A I + D ++++ K LES + KVI
Sbjct: 317 VVGLDLKTVTVGVDGEIFLSLGVIATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDY-ISFVGL--LADPRYC 164
HD +R + L ++ + + NV DTQ+A+SL++ ++ K + ISF+ L + P+
Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHEKFNKSLNEMRPISFINLQRVYYPQSI 436
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR-FLPYIYHNMMKKLNQQSLWY 223
+S ++ + P W RP+TE ++ L +Y ++ +L
Sbjct: 437 MLSDVTPRKMSMC----PN-WGVRPITEEFQLTIVEEAHCLLSALYQSL------SNLIP 485
Query: 224 LAVRGALYCRCFCINENDYVDWPPLPPVPDYLI 256
+ +RG +C +N + + P P P I
Sbjct: 486 VHLRGVFEDKCIEVNHPEVLLASPNRPPPQPFI 518
>gi|301774747|ref|XP_002922792.1| PREDICTED: exosome component 10-like isoform 2 [Ailuropoda
melanoleuca]
Length = 887
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLEL-RSEMYILNESLTDPSIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YCG+ ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCGVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLEL 455
>gi|384083552|ref|ZP_09994727.1| ribonuclease D [gamma proteobacterium HIMB30]
Length = 360
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 22/173 (12%)
Query: 47 ERQLVIGFDCEGVDLCR-HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
E IG D E V + H ++Q+A +L+D + +KA AL + ++
Sbjct: 21 ENATTIGLDTEFVRISTFHPRPGLIQIAVDGDAFLIDP--QADLDLKALGHALTGTTVS- 77
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
++H + D E L+ G V DTQ+AY+L+ ++ +S GL+A+
Sbjct: 78 ILHAAQEDYEVLFRLTGSIPSPVFDTQVAYALLNDKIS--------LSLSGLVAEVLGKE 129
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
+S KEE R WT RPL+E + A +DV L IY + ++L +
Sbjct: 130 LS---KEETR-------SDWTKRPLSEAQCQYAKEDVLVLEPIYEILCQQLEE 172
>gi|322708171|gb|EFY99748.1| exosome complex exonuclease Rrp6, putative [Metarhizium anisopliae
ARSEF 23]
Length = 830
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 31/212 (14%)
Query: 8 QTHIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH-GS 66
Q H P+ S +PIDS + T L E LE + I D E D + G
Sbjct: 208 QKHDPIPS----QPIDSTKATWVDTYEGVL--EMLE-ELRKAKEIAVDLEHHDFRTYTGL 260
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
+C+MQ++ D ++VD +Q ++ + KV H D L G+ ++
Sbjct: 261 VCLMQVSTRDRDWIVDTLQPWRHKLEVLNDVFADPSVVKVFHGAYMDMVWLQRDLGLYVN 320
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ DT A +L+ GR + ++ FVG AD +Y
Sbjct: 321 GLFDTYFACNLL-NYPGRSLA---FLLSKFVGFDADKQYQLAD----------------- 359
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RP+ E M+ A D +L YIY N+ +L
Sbjct: 360 WRIRPIPEDMLYYARSDTHYLLYIYDNVRNEL 391
>gi|95928412|ref|ZP_01311160.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
gi|95135683|gb|EAT17334.1| 3'-5' exonuclease [Desulfuromonas acetoxidans DSM 684]
Length = 374
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 22/160 (13%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
+C++Q + D L+D + G+ + KP L S I K+ H D L F I++
Sbjct: 41 KVCLLQFTYHDTTVLLDPLAAGD--LAPLKPVLADSSIRKIFHAADYDIRCLARDFDIEI 98
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185
+ DT IA + E++ + +L +Y ++ ++ R D W
Sbjct: 99 RGLFDTMIASQFLGEEK---------VGLADVLG--KYFDVTLDKR-----FQRAD---W 139
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS-LWYL 224
+ RPL+ M AA+D R L + + L ++ LW++
Sbjct: 140 SKRPLSPEMCHYAAEDTRHLEKLVAILEPALKEKDRLWWV 179
>gi|344283519|ref|XP_003413519.1| PREDICTED: exosome component 10 isoform 2 [Loxodonta africana]
Length = 862
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S LL YCG+ ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGRH-------SLDHLLK--HYCGVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL + M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPDEMLHYARDDTHYLLYIYDKMRLEL 455
>gi|344283517|ref|XP_003413518.1| PREDICTED: exosome component 10 isoform 1 [Loxodonta africana]
Length = 887
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S LL YCG+ ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGRH-------SLDHLLK--HYCGVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL + M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPDEMLHYARDDTHYLLYIYDKMRLEL 455
>gi|225683831|gb|EEH22115.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 269
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 44 PSSERQLVIGFDCEGVDLCRHGSLCIMQLAF--PDAIYLVD-------AIQGGETVVKAC 94
P+S L I D G+ R GS+ I+QL + +YL+D A T K+
Sbjct: 25 PTSPPSLYI--DLGGISPSREGSISILQLFNHPKNHLYLIDIHVLGREAFTTAATNGKSL 82
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYS 136
+ LES + KV D + DS A +F F I+L V D Q+ S
Sbjct: 83 RTILESPDVPKVFFDVRNDSNAFFFHFDIRLQGVEDIQLMES 124
>gi|357508795|ref|XP_003624686.1| Exosome complex exonuclease rrp6 [Medicago truncatula]
gi|355499701|gb|AES80904.1| Exosome complex exonuclease rrp6 [Medicago truncatula]
Length = 832
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 27/156 (17%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G C+MQ++ ++VD ++ + V K + KV+H RD L FGI
Sbjct: 326 GLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIY 385
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLRQ 180
+ N+ DT A +++ + S LL +CG++ YQ +
Sbjct: 386 ICNMFDTGQASRVLKMER---------YSLQHLLQ--HFCGVTANKEYQNAD-------- 426
Query: 181 DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL ++M++ +D +L YIY M KL
Sbjct: 427 ----WRARPLPDVMIKYGREDTHYLLYIYDLMRIKL 458
>gi|303232226|ref|ZP_07318925.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
gi|302481636|gb|EFL44697.1| ribonuclease D [Atopobium vaginae PB189-T1-4]
Length = 437
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A +VD + AC LE I KV C +D E LY G+
Sbjct: 99 LCLIQMATHTQSAVVDPLACSSLCDLAC--LLEDKSIIKVFFACSQDIEVLYDALGVVPK 156
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
NV D Q+A +F+G Y G + V + Q W+
Sbjct: 157 NVFDAQLA-----------------AAFLGYRYQLGY-GALVEAMVGVHLPKTQALTDWS 198
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
RPLTE ++ AADDV + P +Y ++++L + +
Sbjct: 199 LRPLTEEQLKYAADDVIYQPQMYTLLVRELTRTN 232
>gi|367039187|ref|XP_003649974.1| hypothetical protein THITE_2038171 [Thielavia terrestris NRRL 8126]
gi|346997235|gb|AEO63638.1| hypothetical protein THITE_2038171 [Thielavia terrestris NRRL 8126]
Length = 241
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 55 DCEGVDLCRHGSLCIMQL-AFP-DAIYLVD-------AIQGGETVVKACKPALESSYITK 105
D EGV+L R+GS+ I QL P + YL+D A + K LE + K
Sbjct: 28 DLEGVNLSRYGSISIFQLHVLPRNRTYLIDIYTLQNKAFSTPSKSGRTLKDILECAATPK 87
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQI 133
V D + DS+AL+ FGI L V D Q+
Sbjct: 88 VFFDVRNDSDALHSHFGIALAGVQDLQL 115
>gi|345570352|gb|EGX53175.1| hypothetical protein AOL_s00006g553 [Arthrobotrys oligospora ATCC
24927]
Length = 262
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 52 IGFDCEGVDLCRHGSLCIMQL--AFPDAIYLVDAIQGGETV---------VKACKPALES 100
I D EG +L RHGS+ ++QL + IY++D G++ + K LE
Sbjct: 32 IYIDLEGANLGRHGSISLLQLFISIIPHIYILDIHTLGQSAFTTPSLIDPLTTLKTVLED 91
Query: 101 SYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
I V +D + DS+ALY + + + NVVD Q+
Sbjct: 92 PSIPIVCYDVRSDSDALYNLYSVSIANVVDLQL 124
>gi|338722160|ref|XP_003364495.1| PREDICTED: exosome component 10 isoform 2 [Equus caballus]
Length = 861
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + + I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRREDFIVDTLELRSDMY-ILNESFTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S LL RYC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGRH-------SLDHLLK--RYCSVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLEL 455
>gi|334183304|ref|NP_001185222.1| RRP6-like protein 1 [Arabidopsis thaliana]
gi|332194982|gb|AEE33103.1| RRP6-like protein 1 [Arabidopsis thaliana]
Length = 639
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD + + + + + KVIH RD L FGI
Sbjct: 150 QGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGI 209
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ + S LL YCG++ YQ+ +
Sbjct: 210 YVCNLFDTGQASRVLKLERN---------SLEFLLK--HYCGVAANKEYQKAD------- 251
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIY-------HNMMKKLNQQSLWYLAVRGALYC 232
W RPL ++M R A +D +L YIY H M K+ Q + V Y
Sbjct: 252 -----WRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKEDEQSDSPLVEVYKRSYD 306
Query: 233 RCFCINEND 241
C + E +
Sbjct: 307 VCMQLYEKE 315
>gi|254369642|ref|ZP_04985652.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
gi|157122601|gb|EDO66730.1| hypothetical protein FTAG_00956 [Francisella tularensis subsp.
holarctica FSC022]
Length = 364
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + I+L+D ++ E K K E I K+IH D + F +++
Sbjct: 38 LCLVQLATENEIFLIDTLKDLE--FKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------ATFLGFQTQSSLKTLL---KEILDIEIEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + + DV +L
Sbjct: 136 WRNRPLTQNQLNYSIKDVEYL 156
>gi|302776536|ref|XP_002971426.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
gi|300160558|gb|EFJ27175.1| hypothetical protein SELMODRAFT_95804 [Selaginella moellendorffii]
Length = 512
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 27/162 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G +C+MQ++ ++VD + + + + I KVIH
Sbjct: 247 AVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSD 306
Query: 112 RDSEALYFQFGIKLHNVVDT-QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
RD L FGI + N+ DT Q A L E+ G ++F LL +CG++ +
Sbjct: 307 RDILWLQRDFGIYVCNLFDTGQAARVLRMERFG--------LAF--LLQT--FCGVTPDK 354
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ W RPL+ M++ A +D +L Y+Y M
Sbjct: 355 RYQL--------ADWRLRPLSAEMLKYAREDTHYLLYVYDKM 388
>gi|4585987|gb|AAD25623.1|AC005287_25 Similar to nucleolar protein [Arabidopsis thaliana]
Length = 642
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD + + + + + KVIH RD L FGI
Sbjct: 150 QGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGI 209
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ + S LL YCG++ YQ+ +
Sbjct: 210 YVCNLFDTGQASRVLKLERN---------SLEFLLK--HYCGVAANKEYQKAD------- 251
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIY-------HNMMKKLNQQSLWYLAVRGALYC 232
W RPL ++M R A +D +L YIY H M K+ Q + V Y
Sbjct: 252 -----WRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKEDEQSDSPLVEVYKRSYD 306
Query: 233 RCFCINEND 241
C + E +
Sbjct: 307 VCMQLYEKE 315
>gi|241727922|ref|XP_002413785.1| conserved hypothetical protein [Ixodes scapularis]
gi|215507601|gb|EEC17093.1| conserved hypothetical protein [Ixodes scapularis]
Length = 256
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 51 VIGFDCEGVDLCRHGSLCIMQLA-FPDAIYLVDAIQGGETVVKA--CKPALESSYITKVI 107
++G D EG+ G + ++ LA +Y+ D ++ E + + K LES+ + KV+
Sbjct: 38 MLGLDAEGLAARSRGRISMVTLATLWRHVYIFD-VKESEALFEEGNLKILLESAKMLKVV 96
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEG 143
HD + +E Y FG+K+ V DT AY I Q G
Sbjct: 97 HDFRNIAETFYNTFGVKVRKVFDTHSAYQTIAIQRG 132
>gi|145336746|ref|NP_175846.3| RRP6-like protein 1 [Arabidopsis thaliana]
gi|110741918|dbj|BAE98900.1| hypothetical protein [Arabidopsis thaliana]
gi|160892399|gb|ABX52079.1| RRP6-like protein 1 [Arabidopsis thaliana]
gi|332194981|gb|AEE33102.1| RRP6-like protein 1 [Arabidopsis thaliana]
Length = 637
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD + + + + + KVIH RD L FGI
Sbjct: 150 QGLTCLMQISTRTEDYIVDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGI 209
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ + S LL YCG++ YQ+ +
Sbjct: 210 YVCNLFDTGQASRVLKLERN---------SLEFLLK--HYCGVAANKEYQKAD------- 251
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIY-------HNMMKKLNQQSLWYLAVRGALYC 232
W RPL ++M R A +D +L YIY H M K+ Q + V Y
Sbjct: 252 -----WRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTMAKEDEQSDSPLVEVYKRSYD 306
Query: 233 RCFCINEND 241
C + E +
Sbjct: 307 VCMQLYEKE 315
>gi|149695529|ref|XP_001492550.1| PREDICTED: exosome component 10 isoform 1 [Equus caballus]
Length = 886
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + + I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRREDFIVDTLELRSDMY-ILNESFTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S LL RYC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGRH-------SLDHLLK--RYCSVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLEL 455
>gi|421095097|ref|ZP_15555810.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
gi|410361807|gb|EKP12847.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200801926]
Length = 439
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ + E I K+ H
Sbjct: 80 ISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LDGLGNLFEDKKILKIFHSA 137
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG K HN+ DT + L++ ++ DY Y I +
Sbjct: 138 IDDIKALKKDFGFKFHNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 186
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 187 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNLYEEAL 234
>gi|226293213|gb|EEH48633.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 271
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 44 PSSERQLVIGFDCEGVDLCRHGSLCIMQLAF--PDAIYLVD-------AIQGGETVVKAC 94
P+S L I D G+ R GS+ I+QL + +YL+D A T K+
Sbjct: 27 PTSPPSLYI--DLGGISPSREGSISILQLFNHPKNHLYLIDIHVLGREAFTTAATNGKSL 84
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
+ LES + KV D + DS A +F F I+L V D Q+
Sbjct: 85 RTILESPDVPKVFFDVRNDSNAFFFHFDIRLQGVEDIQL 123
>gi|71051605|ref|NP_001012748.1| exosome component 10 [Gallus gallus]
Length = 910
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 25/158 (15%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G C+MQ++ +++D ++ + + I KV+H D E L FG+
Sbjct: 342 GLTCLMQISTRTEDFIIDTLEL-RSDMSILNETFTDPAIVKVLHGADSDVEWLQKDFGLY 400
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
L N+ DT A L+ K S D + YC + ++ ++
Sbjct: 401 LVNMFDTHQAARLLNLG---KHSLDHLLKL--------YCSVDADKQYQLAD-------- 441
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
W RPL E M++ A DD +L YIY M +++LW
Sbjct: 442 WRIRPLPEEMIQYARDDTHYLLYIYDKM-----REALW 474
>gi|398023443|ref|XP_003864883.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503119|emb|CBZ38203.1| hypothetical protein, conserved [Leishmania donovani]
Length = 412
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 78 IYLVDAIQGGETV-VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYS 136
++L D + V ++A +P I K+ DC+RD EAL Q + V+D Q+ ++
Sbjct: 139 VFLFDVLSLSVPVFMQALRPVFHDETIRKLFFDCRRDIEALSTQMDLTPRRVLDLQLLFT 198
Query: 137 LIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV--RVLLRQDPQFWTYRPLTELM 194
+ + + RS + +L GI QE + ++ D W RPL E
Sbjct: 199 AV---QWKLRSVNRRSGMTYVLKS--VAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHF 253
Query: 195 VRAAADDVRFLPYIYHNMMKKLNQQ 219
+ AADDVR + ++ L QQ
Sbjct: 254 LEYAADDVRHI-HLLSTYFPSLTQQ 277
>gi|440680047|ref|YP_007154842.1| 3'-5' exonuclease [Anabaena cylindrica PCC 7122]
gi|428677166|gb|AFZ55932.1| 3'-5' exonuclease [Anabaena cylindrica PCC 7122]
Length = 209
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+ D E + L + LC++QL P+ I G+T K LE+ ++ KV H
Sbjct: 27 LAVDTETMGLLPQRDRLCLIQLCNPEGQVTAIRIAQGQTEAPHLKQLLEAPHVLKVFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L GI++ V T+IA L R D QE
Sbjct: 87 RFDVATLRHNLGIQVQPVFCTKIASKLARTYTNRHGLKD-----------------VVQE 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E+V + W L+E + AA+DVR+L I + + L ++ W LA
Sbjct: 130 LEQVELDKSSQSSDWGNATNLSEAQLSYAANDVRYLLNIQQKLTQMLQREGRWQLA 185
>gi|418720286|ref|ZP_13279484.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|418738363|ref|ZP_13294758.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|410743264|gb|EKQ92007.1| 3'-5' exonuclease [Leptospira borgpetersenii str. UI 09149]
gi|410745856|gb|EKQ98764.1| 3'-5' exonuclease [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456888486|gb|EMF99469.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200701203]
Length = 388
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ + E I K+ H
Sbjct: 29 ISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LDGLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG K HN+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFKFHNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNLYEEAL 183
>gi|254448397|ref|ZP_05061858.1| ribonuclease D [gamma proteobacterium HTCC5015]
gi|198262010|gb|EDY86294.1| ribonuclease D [gamma proteobacterium HTCC5015]
Length = 384
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 20/151 (13%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
LC++Q+A D I +D + + + L I KV+H +D E LY
Sbjct: 41 QLCLIQIANHDLIACIDPLAIDD--LTPLYALLHDESIVKVLHAAVQDQEILYQSSQQPP 98
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185
V DTQ+A SL+ D + + L+ + CG+ + + R D W
Sbjct: 99 KPVFDTQVAASLL--------GYGDQMGYAKLVE--KICGVQLDKSQS-----RTD---W 140
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ RPL E + AADDVR L IY ++ +L
Sbjct: 141 SRRPLNEKQIDYAADDVRHLREIYQHLKTEL 171
>gi|407715500|ref|YP_006836780.1| ribonuclease D [Cycloclasticus sp. P1]
gi|407255836|gb|AFT66277.1| Ribonuclease D [Cycloclasticus sp. P1]
Length = 383
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 36/175 (20%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKAC--KPALESSY---ITKVIHDCKRDSEALYFQF 121
L ++Q+A D + ++D I AC KP L+ Y I KV H ++D E Y
Sbjct: 42 LALIQIATADIVAIIDPI--------ACDIKPLLDILYNQNILKVFHAARQDQEIFYDLR 93
Query: 122 GIKLHNVVDTQIAYSLIE--EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLR 179
G L V DTQIA ++ EQ G R DD + G+ + R
Sbjct: 94 GKPLAPVFDTQIAAPILGHPEQAGYARLVDDIL------------GVQLSKAHS-----R 136
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS-LWYLAVRGALYCR 233
D W RPL+E + AADDV +L +Y + +L ++ L +LA A C+
Sbjct: 137 TD---WLRRPLSEEQITYAADDVIYLAKLYPLLENQLKEKDRLNWLAPAFADLCK 188
>gi|116329422|ref|YP_799142.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116329974|ref|YP_799692.1| ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
gi|116122166|gb|ABJ80209.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. L550]
gi|116123663|gb|ABJ74934.1| Ribonuclease III [Leptospira borgpetersenii serovar Hardjo-bovis
str. JB197]
Length = 388
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ + E I K+ H
Sbjct: 29 ISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LDGLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG K HN+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFKFHNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
KE+ W RPL + ++ AA D +L I+ M ++L +++L+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNLY 179
>gi|22298627|ref|NP_681874.1| ribonuclease D [Thermosynechococcus elongatus BP-1]
gi|22294807|dbj|BAC08636.1| tlr1083 [Thermosynechococcus elongatus BP-1]
Length = 211
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 21/194 (10%)
Query: 39 AEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPAL 98
A FL QL + + G+++ R LC++Q+ P+ V I G+ + L
Sbjct: 20 AHFLNAD---QLAVDTETMGLNIPR-DRLCLVQVCDPEGQVAVVKIGRGQKEAPHLQQLL 75
Query: 99 ESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLL 158
E ITK+ H + D L + GI++H V T+IA + R D + +G+
Sbjct: 76 EHPRITKIFHYARFDLATLRYHLGIRVHPVFCTKIASKIARTYSPRHGLKDLVLDLLGVE 135
Query: 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
D Q + L E +R AA+DVR+L + + L +
Sbjct: 136 IDKS----------------AQSSDWGNATALREDQLRYAANDVRYLIPLRQQLTAMLKR 179
Query: 219 QSLWYLAVRGALYC 232
+ + L V+ AL C
Sbjct: 180 EERFEL-VQTALSC 192
>gi|326932437|ref|XP_003212324.1| PREDICTED: exosome component 10-like [Meleagris gallopavo]
Length = 888
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 71/171 (41%), Gaps = 31/171 (18%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
+DL H G C+MQ++ +++D ++ + + I KV+H
Sbjct: 307 ALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLEL-RSDMSILNETFTDPAIVKVLHGAD 365
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ L N+ DT A L+ K S D + YC + ++
Sbjct: 366 SDVEWLQKDFGLYLVNMFDTHQAARLLN---LGKHSLDHLLKL--------YCSVDADKQ 414
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
++ W RPL E M++ A DD +L YIY M +++LW
Sbjct: 415 YQLAD--------WRIRPLPEEMIQYARDDTHYLLYIYDKM-----REALW 452
>gi|451942118|ref|YP_007462755.1| ribonuclease D [Bartonella vinsonii subsp. berkhoffii str. Winnie]
gi|451901505|gb|AGF75967.1| ribonuclease D [Bartonella vinsonii subsp. berkhoffii str. Winnie]
Length = 384
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 25/160 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + ++A + I KV H ++D E +Y GI +
Sbjct: 40 LCLIQLASPDVTILIDPI-AQDINLQAFFDLMVDKKIIKVFHAARQDIETIYHLGGIIPY 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQIA S+ D IS+ ++ + C + +K +F
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIV---QRCTGHHIDKS---------SRFTD 138
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
W+YRPL+E + A DV +L +Y + K+L N+++ W
Sbjct: 139 WSYRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRTHW 178
>gi|256073603|ref|XP_002573119.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
gi|353232486|emb|CCD79841.1| polymyositis/scleroderma autoantigen-related [Schistosoma mansoni]
Length = 830
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 28/187 (14%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C++Q++ + Y++DA+ + + I KV H
Sbjct: 237 AVDLEHHSYRSFLGITCLIQMSTLGSDYIIDALALRDHL-SILNEVFTDPKIVKVFHGSD 295
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L FG+ + N+ DT IA L+ Q GR S LL R+ GI +K
Sbjct: 296 SDLMWLQRDFGVYVVNLFDTGIAARLL--QYGR-------FSLSYLLQ--RFVGIYANKK 344
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA-- 229
++ W RPL ++ A D +L +I M ++L + L +A+ A
Sbjct: 345 YQL--------ADWRIRPLPNELIEYARSDTHYLLHIASRMCRELQDRDLLSVAIERARQ 396
Query: 230 LYCRCFC 236
L RC+
Sbjct: 397 LCLRCYT 403
>gi|357622825|gb|EHJ74204.1| hypothetical protein KGM_19917 [Danaus plexippus]
Length = 315
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFPDAIYLVD-AIQGGETVVKACKPALESSYITKVIHDC 110
I +G ++ R L + L+ P IY+ D + K LES + K++HDC
Sbjct: 115 ICISTDGGNMGRKCKLPFLVLSTPAQIYIFDIQVLQHHAFDAGLKKLLESDHPKKIVHDC 174
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
++ S+ LY + +KL++V DTQ+ LI + R P++ S L Y G+
Sbjct: 175 RKISDCLYHKHNVKLNSVFDTQVG-DLIITRNKTGRLPNNVKSLSECLN--TYLGLRLNT 231
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDV----RFLPYIYHNMM 213
++ +++ + RPL+ + + A +V RF I MM
Sbjct: 232 IQDKLDIIKCNE-----RPLSTTIKESLARNVCYMHRFSEIINEQMM 273
>gi|452835556|gb|AGG14045.1| exosome subunit RRP6p-like protein [Leishmania braziliensis]
Length = 735
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 22/162 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C+MQ++ + ++VD +Q +++ P + I KV+H
Sbjct: 255 IAVDLEHHDFYSYQGITCLMQISTREEDFIVDCLQL-RSLMGTLAPVFLNPLILKVLHGA 313
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L F + L N DT +A + ++ + A +C + +
Sbjct: 314 REDIRWLQKDFSLYLVNFFDTGVALQTL------------HMPYSLAFAVDHFCQVKLNK 361
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
K + W RPL+ MV A D FL Y+Y +
Sbjct: 362 KFQT--------ADWRVRPLSAEMVHYARQDTHFLLYVYDRL 395
>gi|269959116|ref|YP_003328905.1| ribonuclease D [Anaplasma centrale str. Israel]
gi|269848947|gb|ACZ49591.1| ribonuclease D [Anaplasma centrale str. Israel]
Length = 389
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 35/152 (23%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESS---------YITKVIHDCKRDSEAL 117
LC++Q+A+ QGG+ VV L+ S I KV HDC++D +AL
Sbjct: 45 LCLLQMAY----------QGGQCVVDVLDERLDLSPLQEIFDDEGICKVFHDCRQDLDAL 94
Query: 118 YFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVL 177
+F + DTQ A L E D+ + + L+ ++ G+ ++L
Sbjct: 95 SQRFLRLPKPIFDTQTASMLCEYH-------DNSVGYSKLV--EQFLGVKLN-----KLL 140
Query: 178 LRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
++ W++RPL+E VR A DDV +L +Y
Sbjct: 141 FKRVD--WSHRPLSEGKVRYALDDVTYLHELY 170
>gi|449310638|gb|AGE92546.1| exosome subunit RRP6p-like protein [Leishmania braziliensis]
Length = 735
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 22/162 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C+MQ++ + ++VD +Q +++ P + I KV+H
Sbjct: 255 IAVDLEHHDFYSYQGITCLMQISTREEDFIVDCLQL-RSLMGTLAPVFLNPLILKVLHGA 313
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L F + L N DT +A + ++ + A +C + +
Sbjct: 314 REDIRWLQKDFSLYLVNFFDTGVALQTL------------HMPYSLAFAVDHFCQVKLNK 361
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
K + W RPL+ MV A D FL Y+Y +
Sbjct: 362 KFQT--------ADWRVRPLSAEMVHYARQDTHFLLYVYDRL 395
>gi|261253420|ref|ZP_05945993.1| ribonuclease D [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260936811|gb|EEX92800.1| ribonuclease D [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 371
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 29/201 (14%)
Query: 29 HIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGG 87
I+T +SQL E + S+ V+ D E V + L ++QL + + L+D
Sbjct: 4 QIITQSSQL--EEVCQSARNVDVVMLDTEFVRTRTYYPQLGLIQLFDGEKLSLIDP---- 57
Query: 88 ETVVK---ACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
TV++ A L+ + + KV+H C D E + FG + +VDTQ+ + + G
Sbjct: 58 -TVIEDMTAFVELLKDTSVLKVLHACGEDLEVFHNSFGCLPYPMVDTQLMAAFL----GH 112
Query: 145 KRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
S F L+ + Y G+ + E R D W RPL++ + AA DV +
Sbjct: 113 GLS----TGFAALVEN--YLGVELDKSES-----RTD---WLARPLSDKQLEYAAADVYY 158
Query: 205 LPYIYHNMMKKLNQQSLWYLA 225
L +Y + +K+ Q W A
Sbjct: 159 LQPLYEQLFEKITQAGWWEAA 179
>gi|154336623|ref|XP_001564547.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061582|emb|CAM38612.1| putative exosome subunit rrp6p homologue [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 735
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 22/162 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C+MQ++ + ++VD +Q +++ P + I KV+H
Sbjct: 255 IAVDLEHHDFYSYQGITCLMQISTREEDFIVDCLQL-RSLMGTLAPVFLNPLILKVLHGA 313
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L F + L N DT +A + ++ + A +C + +
Sbjct: 314 REDIRWLQKDFSLYLVNFFDTGVALQTL------------HMPYSLAFAVDHFCQVKLNK 361
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
K + W RPL+ MV A D FL Y+Y +
Sbjct: 362 KFQT--------ADWRVRPLSAEMVHYARQDTHFLLYVYDRL 395
>gi|221194797|ref|ZP_03567854.1| ribonuclease D [Atopobium rimae ATCC 49626]
gi|221185701|gb|EEE18091.1| ribonuclease D [Atopobium rimae ATCC 49626]
Length = 376
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 67 LCIMQLAFPDAIYLVD--AIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
LC++Q++ + I +D +I +V+ E I KVIH C +D E L +
Sbjct: 38 LCLVQVSTGEEIAAIDPLSIDDLSPLVRL----FEDQKIVKVIHACSQDLEVLLYGMHCA 93
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
V DTQ+A + + R Y S V Y G+ + E +
Sbjct: 94 CAPVFDTQLAAAFLG-----MRQQASYASVV-----EHYMGVHLPKTESL--------TD 135
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W+ RPL + A DDVR+LP IY M ++L
Sbjct: 136 WSRRPLDPEQLVYAEDDVRYLPDIYRCMYERL 167
>gi|145548742|ref|XP_001460051.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427879|emb|CAK92654.1| unnamed protein product [Paramecium tetraurelia]
Length = 676
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 85/205 (41%), Gaps = 37/205 (18%)
Query: 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAFPDAIYL 80
P ++TNA L L+ E GF VDL + G C++QL+ Y+
Sbjct: 191 PPMMITNADHLGELVLKIQQEVDQN-GFSEIAVDLEHNHQISYLGITCLIQLSTRSQDYI 249
Query: 81 VDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEE 140
+D + + + I KV H + D + L FG+ + N+ DT A ++
Sbjct: 250 IDPFPLWKQLGDMLSVIFANPKIVKVFHGAENDVQWLQRDFGLYIVNLFDTFHASKELQL 309
Query: 141 QEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLRQDPQFWTYRPLTELMVR 196
+ SF LL++ YC S YQ + WT RPL + M++
Sbjct: 310 MQN---------SFQFLLSE--YCKKSTDKTYQTAD------------WTQRPLPDEMIK 346
Query: 197 AAADDVRFLPYIYHNM---MKKLNQ 218
A D +L YIY M +KKLN+
Sbjct: 347 YAQIDTHYLLYIYDRMRQDLKKLNK 371
>gi|356571755|ref|XP_003554038.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 643
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ +++D ++ V + + KV+H RD L FGI
Sbjct: 218 QGLTCLMQISTRTEDFVIDTLKVRNHVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGI 277
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT Q R D Y S LL ++CG++ ++ +
Sbjct: 278 YVCNMFDTG--------QSSRVLKLDRY-SLQYLLQ--QFCGVTANKEYQ--------SA 318
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL ++M+R +D +L YIY M KL
Sbjct: 319 DWRLRPLPDVMLRYGREDTHYLLYIYDLMRIKL 351
>gi|381152499|ref|ZP_09864368.1| ribonuclease D [Methylomicrobium album BG8]
gi|380884471|gb|EIC30348.1| ribonuclease D [Methylomicrobium album BG8]
Length = 387
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
C++Q+A PD + VD I + AL + I KV+H ++D E Y G
Sbjct: 43 KFCLLQIATPDWVACVDPI--ALPRLDELFEALYNPGIVKVLHSSRQDLEIFYQLTGKLP 100
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185
+ DTQ+A L+ G + +P Y V L + + R D W
Sbjct: 101 SPIFDTQVAAPLL----GYQDNP-GYAMLVSHLLNVNLN----------KAHTRAD---W 142
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ RPLTE ++ AADDV +L IY M KL+
Sbjct: 143 SKRPLTEEEIQYAADDVIYLCRIYQLMRDKLS 174
>gi|409910998|ref|YP_006889463.1| ribonuclease D [Geobacter sulfurreducens KN400]
gi|298504558|gb|ADI83281.1| ribonuclease D, putative [Geobacter sulfurreducens KN400]
Length = 381
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 29/144 (20%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
+C++Q A P +VD + + + P ++ I KV H D +L+ FG+++
Sbjct: 45 KVCLIQFAVPGYAAIVDPLAAPD--ISPLAPLFANAAIRKVFHGADYDIRSLHRDFGMEV 102
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF- 184
+N+ DT IA L+ E+E G++ Q ++ V L D Q+
Sbjct: 103 NNLFDTMIACQLLGERE---------------------FGLAAQLRKRFGVEL--DKQYQ 139
Query: 185 ---WTYRPLTELMVRAAADDVRFL 205
W+ RPLT M+ A D L
Sbjct: 140 RADWSRRPLTPGMIEYAVKDTTLL 163
>gi|71982776|ref|NP_001021324.1| Protein EGAL-1, isoform b [Caenorhabditis elegans]
gi|351049692|emb|CCD63390.1| Protein EGAL-1, isoform b [Caenorhabditis elegans]
Length = 569
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 51 VIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKA-CKPALESSYITKVI 107
V+G D + V + G L + +A I + D ++++ K LES + KVI
Sbjct: 317 VVGLDLKTVTVGVDGEIFLSLGVIATTSQIGIFDLASSDVIILESGFKGILESEKVVKVI 376
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDY-ISFVGL 157
HD +R + L ++ + + NV DTQ+A+SL++ ++ K + ISF+ L
Sbjct: 377 HDARRVASLLAHKYAVHMRNVFDTQVAHSLLQHEKFNKSLNEMRPISFINL 427
>gi|410966022|ref|XP_003989537.1| PREDICTED: exosome component 10 isoform 2 [Felis catus]
Length = 862
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 30/172 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL----NQQ 219
++ W RPL E M+ A DD +L YIY M +L NQQ
Sbjct: 419 FQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNQQ 462
>gi|146101398|ref|XP_001469106.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073475|emb|CAM72206.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 412
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 78 IYLVDAIQGGETV-VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYS 136
++L D + V ++A +P I K+ DC+RD EAL Q + V+D Q+ ++
Sbjct: 139 VFLFDVLSLSVPVFMQALRPVFHDETIRKLFFDCRRDIEALSTQMDLTPKRVLDLQLLFT 198
Query: 137 LIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV--RVLLRQDPQFWTYRPLTELM 194
+ + + RS + +L GI QE + ++ D W RPL E
Sbjct: 199 AL---QWKLRSVNRRSGMTYVLKS--VAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHF 253
Query: 195 VRAAADDVRFLPYIYHNMMKKLNQQ 219
+ AADDVR + ++ L QQ
Sbjct: 254 LEYAADDVRHI-HLLSTYFPSLTQQ 277
>gi|403418903|emb|CCM05603.1| predicted protein [Fibroporia radiculosa]
Length = 751
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G +C+MQ++ D ++VDA+ + + +A L I KV+H +
Sbjct: 163 AVDLEHHSYRTYSGFVCLMQISTRDEDWVVDALAVRDEM-EALNEVLTDPAIVKVLHGAE 221
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L F + + N+ DT A ++E S LL YC + ++
Sbjct: 222 SDIIWLQQDFNLYIVNLFDTYHASKILEFPRH---------SLATLLE--MYCDFTADKR 270
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A D FL +IY N+ L
Sbjct: 271 YQL--------ADWRIRPLPEEMLAYARSDTHFLLFIYDNLRNAL 307
>gi|388579133|gb|EIM19461.1| hypothetical protein WALSEDRAFT_61456 [Wallemia sebi CBS 633.66]
Length = 789
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 21/170 (12%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G +C+MQ++ +++D ++ + ++K + I KV H
Sbjct: 225 IAIDLEHHDFRSYRGFVCLMQISIRGEDFIIDTLELRDQLIK-LNDTFTNPAIVKVFHGA 283
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D L FG+ + N+ DT A ++ + S I F G D RY
Sbjct: 284 DSDIVWLQRDFGVYIVNMFDTYHATKVLGFSQHSLASL--LIKFCGYTPDKRYQ------ 335
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
R D W RPLT M+ A D +L YIY + L ++S
Sbjct: 336 --------RAD---WRKRPLTNKMLEYARSDTHYLLYIYDMLRNTLIEKS 374
>gi|124359359|gb|ABD28520.2| HRDC; Polynucleotidyl transferase, Ribonuclease H fold [Medicago
truncatula]
Length = 341
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 27/160 (16%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G C+MQ++ ++VD ++ + V K + KV+H RD L FGI
Sbjct: 28 GLTCLMQISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIY 87
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLRQ 180
+ N+ DT A +++ + S LL +CG++ YQ +
Sbjct: 88 ICNMFDTGQASRVLKMER---------YSLQHLL--QHFCGVTANKEYQNAD-------- 128
Query: 181 DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL ++M++ +D +L YIY M KL + S
Sbjct: 129 ----WRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELS 164
>gi|49475730|ref|YP_033771.1| ribonuclease D [Bartonella henselae str. Houston-1]
gi|81647819|sp|Q6G329.1|RND_BARHE RecName: Full=Ribonuclease D; Short=RNase D
gi|49238537|emb|CAF27773.1| Ribonuclease D [Bartonella henselae str. Houston-1]
Length = 406
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + +K + + I KV H ++D E +Y G+
Sbjct: 62 LCLIQLASPDTTVLIDPI-SQDIDLKPFFDLMVNKKIVKVFHAARQDIETIYHLGGVIPS 120
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA S+ D IS+ ++ R G YQ + R W+
Sbjct: 121 PLFDTQIAGSIC--------GFGDSISYDQIVQ--RCTG--YQLDKSSRF------TDWS 162
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
+RPL+E + A DV +L +Y + K+L N+++ W
Sbjct: 163 FRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRTHW 200
>gi|410966020|ref|XP_003989536.1| PREDICTED: exosome component 10 isoform 1 [Felis catus]
Length = 887
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 30/172 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL----NQQ 219
++ W RPL E M+ A DD +L YIY M +L NQQ
Sbjct: 419 FQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLELWERGNQQ 462
>gi|302683492|ref|XP_003031427.1| hypothetical protein SCHCODRAFT_109934 [Schizophyllum commune H4-8]
gi|300105119|gb|EFI96524.1| hypothetical protein SCHCODRAFT_109934, partial [Schizophyllum
commune H4-8]
Length = 319
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 99/252 (39%), Gaps = 39/252 (15%)
Query: 30 IVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQL-AFPDAIYLVDAIQGG 87
+V S L E L+ R + D EG DL +G L ++ D YLVDA+
Sbjct: 2 LVNTTSGL--ESLQEQLRRSGIFALDMEGRDLGAANGKLSVISFRTLDDVTYLVDALAFT 59
Query: 88 ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ------ 141
+++ L S +TK++ D + D+ L +G++L VD QIA + +
Sbjct: 60 ADQLQSLLSLLADSSVTKLVWDGRMDASELLHGYGVQLRGAVDLQIADIMARRKRESFFD 119
Query: 142 ------EGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLR-------QDPQF---- 184
G + P I+ R G+ E+ V+ R Q P+F
Sbjct: 120 QKRRLSRGYRGIPASLITEAEFADVHRLNGLR-GAAEDYGVIQRPMGLRGPQGPKFDHSK 178
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKK-------LNQQSLWYLAVRGALYCRCFCI 237
W RPLT V A +DV + +Y + L +Q+ Y ++ + RC
Sbjct: 179 WLQRPLTAEQVVYATEDVDMILALYRIFKGRGDIQEANLKRQTEAYHSI----HSRCRPD 234
Query: 238 NENDYVDWPPLP 249
N Y+ +P
Sbjct: 235 GSNAYLRHSLMP 246
>gi|386719281|ref|YP_006185607.1| ribonuclease D [Stenotrophomonas maltophilia D457]
gi|384078843|emb|CCH13436.1| Ribonuclease D [Stenotrophomonas maltophilia D457]
Length = 359
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 31/216 (14%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE +R IG D E + + L ++Q+A I L+D + G T +A P
Sbjct: 8 PAELDPYFQQRPARIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMT--EALAP 65
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
L I KV+H D A + G+ + DTQI SL G + +
Sbjct: 66 WLADESIVKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGGG--------MGYQK 117
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---- 212
L+A+ G++ + E R D W RPL+E ++ AADDV L + H+
Sbjct: 118 LVAE--ITGVALAKGET-----RSD---WMRRPLSESQLQYAADDVEHL-FALHDAIDAR 166
Query: 213 MKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPL 248
++ L +Q +L G R ND WP L
Sbjct: 167 LQALGRQQ--WLHDDGE---RLLASVANDEDRWPHL 197
>gi|403289992|ref|XP_003936119.1| PREDICTED: exosome component 10 [Saimiri boliviensis boliviensis]
Length = 884
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L I KV H
Sbjct: 309 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 367
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 368 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCSVESNKQ 416
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
++ W RPL E M+ A DD +L YIY M +L ++S
Sbjct: 417 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLELWERS 457
>gi|189207443|ref|XP_001940055.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976148|gb|EDU42774.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 216
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 55 DCEGVDLCRHGSLCIMQLAF-----PDAIYLVD-------AIQGGETVVKACKPALESSY 102
D EGV+LCR GS+ I L P +YL+D A K L+
Sbjct: 39 DLEGVNLCREGSVLIFTLLIDTVMPPGRVYLIDVHTLGAQAFNTAGAKQKTLIDILQDEK 98
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYS 136
I KV D + DS+AL+ F + L V D Q+ S
Sbjct: 99 IPKVFFDVRNDSDALFAHFDVALQGVGDVQLMES 132
>gi|426239736|ref|XP_004013775.1| PREDICTED: exosome component 10 isoform 2 [Ovis aries]
Length = 862
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-VLNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCSVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|389594941|ref|XP_003722693.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|323363921|emb|CBZ12927.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 412
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 9/145 (6%)
Query: 78 IYLVDAIQGGETV-VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYS 136
++L D + V ++A +P I K+ DC+RD EAL Q + V+D Q+ ++
Sbjct: 139 VFLFDVLSLSVPVFMQAIRPLFHDETIRKLFFDCRRDIEALSTQMDLTPRRVLDLQLLFT 198
Query: 137 LIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV--RVLLRQDPQFWTYRPLTELM 194
+ + + RS + +L GI QE + ++ D W RPL E
Sbjct: 199 SV---QWKLRSVNRRSGMTYVLKS--VAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHF 253
Query: 195 VRAAADDVRFLPYIYHNMMKKLNQQ 219
+ AADDVR + ++ L QQ
Sbjct: 254 LEYAADDVRHI-HLLSTYFPSLTQQ 277
>gi|344208183|ref|YP_004793324.1| ribonuclease D [Stenotrophomonas maltophilia JV3]
gi|343779545|gb|AEM52098.1| ribonuclease D [Stenotrophomonas maltophilia JV3]
Length = 359
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 31/216 (14%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE +R IG D E + + L ++Q+A I L+D + G T +A P
Sbjct: 8 PAELDAYFQQRPARIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMT--EALAP 65
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
L I KV+H D A + G+ + DTQI SL G + +
Sbjct: 66 WLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGGG--------MGYQK 117
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---- 212
L+A+ G++ + E R D W RPL+E ++ AADDV L + H+
Sbjct: 118 LVAE--ITGVALAKGET-----RSD---WMRRPLSESQLQYAADDVEHL-FALHDAIDAR 166
Query: 213 MKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPL 248
++ L +Q +L G R ND WP L
Sbjct: 167 LQALGRQQ--WLHDDGE---RLLASVANDEDRWPHL 197
>gi|196007028|ref|XP_002113380.1| hypothetical protein TRIADDRAFT_27020 [Trichoplax adhaerens]
gi|190583784|gb|EDV23854.1| hypothetical protein TRIADDRAFT_27020, partial [Trichoplax
adhaerens]
Length = 535
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 34/206 (16%)
Query: 21 PIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLAF 74
P+D P++++T +L + LE V F VDL H G +C+MQ++
Sbjct: 233 PLDET-PLNVITEKDEL-KDLLETLKS---VTEF---AVDLEHHSYRSYQGFVCLMQIST 284
Query: 75 PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIA 134
DA Y+VD + + + I K++H D L F I + N+ DT A
Sbjct: 285 RDADYIVDTL-ALRSELWTLNEVFSDPKIIKILHGADSDIIWLQRDFAIYVVNMFDTGQA 343
Query: 135 YSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELM 194
L++ P +S++ L +YC ++ + ++ W RPL + M
Sbjct: 344 ARLLQ-------FPRFSLSYLLL----KYCNVTANKGLQLAD--------WRIRPLPQEM 384
Query: 195 VRAAADDVRFLPYIYHNMMKKLNQQS 220
V+ A +D +L YI+ + +L S
Sbjct: 385 VQYAREDTHYLLYIFDVLTNELMNAS 410
>gi|88800842|ref|ZP_01116397.1| ribonuclease D [Reinekea blandensis MED297]
gi|88776415|gb|EAR07635.1| ribonuclease D [Reinekea sp. MED297]
Length = 380
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 35/178 (19%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
VI D E V + L ++Q+ D ++L+D +Q + L I KV+H
Sbjct: 26 VIALDTEFVRTDSFYAHLGLIQVGIEDQVWLIDPLQINDWA--PLVRVLSDPAIVKVLHA 83
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
D+E L G++L NV DTQIA G L P +SY
Sbjct: 84 LSEDAEVLAHHLGVELQNVFDTQIA--------------------AGFLGHP--VQMSYA 121
Query: 170 EKEEV-------RVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
E + R D W RPL + AA DV +L +Y + +L +Q+
Sbjct: 122 RLVEAICDVELPKEATRSD---WLQRPLADEQCFYAAADVLWLYRVYQHCAAQLKEQN 176
>gi|426239734|ref|XP_004013774.1| PREDICTED: exosome component 10 isoform 1 [Ovis aries]
Length = 887
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-VLNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCSVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|398392757|ref|XP_003849838.1| hypothetical protein MYCGRDRAFT_17511, partial [Zymoseptoria
tritici IPO323]
gi|339469715|gb|EGP84814.1| hypothetical protein MYCGRDRAFT_17511 [Zymoseptoria tritici IPO323]
Length = 239
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 54 FDCEGVDLCRHGSLCIMQLAF-PDA-IYLVDAIQGGETVV-------KACKPALESSYIT 104
D EG DL R G+L ++ + P+ +YL+D G+ + K +ES I
Sbjct: 26 MDLEGNDLSRAGTLSLITILLEPEKDVYLIDITTLGQKAFSTADDNGRTFKSVMESPDII 85
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
KV D + DS+ALY + +++ + D Q+ E R S ++ + D +
Sbjct: 86 KVFFDIRNDSDALYSLYRVRVAGIEDLQLM-----ELASRNFSK-KCVNGLAKCIDGDHT 139
Query: 165 GISYQEKEEVRVLLRQ-----DP------QFWTYRPLTELMVRAAADDVRFLPYIYHNMM 213
I + EK + + + Q DP + RPL+E M + A DV F+P++
Sbjct: 140 -IGHAEKRQWQTVKDQGRKLFDPARGGSYSVFDQRPLSEDMKQYCAQDVTFMPHLRQAYR 198
Query: 214 KKL 216
+KL
Sbjct: 199 QKL 201
>gi|359319089|ref|XP_003638993.1| PREDICTED: exosome component 10 isoform 1 [Canis lupus familiaris]
Length = 861
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-ILNESLTDPTIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCSVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLEL 455
>gi|427730695|ref|YP_007076932.1| ribonuclease D [Nostoc sp. PCC 7524]
gi|427366614|gb|AFY49335.1| ribonuclease D [Nostoc sp. PCC 7524]
Length = 209
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QL P+ I G+T K LE++ + KV H
Sbjct: 27 IAVDTETMGLLPQRDRLCLVQLCNPEGKVTAIRILKGQTQAPNLKTLLEATNVLKVFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L + GI + V T+IA L R D QE
Sbjct: 87 RFDVATLRYHLGIHVQPVFCTKIASKLARTYTNRHGLKD-----------------VVQE 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E++ + W L+E + AA+DVR+L + + L ++ W LA
Sbjct: 130 LEKIELDKTAQSSDWGNAANLSEAQLSYAANDVRYLLSVQQKLTAMLEREERWQLA 185
>gi|418749157|ref|ZP_13305449.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
gi|418757399|ref|ZP_13313587.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|384117070|gb|EIE03327.1| 3'-5' exonuclease domain / HRDC domain multi-domain protein
[Leptospira licerasiae serovar Varillal str. VAR 010]
gi|404276226|gb|EJZ43540.1| 3'-5' exonuclease [Leptospira licerasiae str. MMD4847]
Length = 389
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 27/178 (15%)
Query: 55 DCEGVDLCRHG------SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIH 108
DC +D G +C++Q++ Y+ D I+ + + P E+ I K+ H
Sbjct: 27 DCLSIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIRLDD--LNGLGPLFENPNILKIFH 84
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
D +AL FG K N+ DT + L++ ++ S + L+ Y +
Sbjct: 85 SASDDIKALKRDFGFKFINIADTMFSSRLLDLEQN---------SLLYLV--EHYHKVKL 133
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
+KE+ W RPL + ++ AA D +L I+ M ++L ++ L AV
Sbjct: 134 SKKEQ--------KSNWEKRPLEKSQLQYAALDTVYLESIWTKMGEELGKRKLLDEAV 183
>gi|431906334|gb|ELK10531.1| Exosome component 10 [Pteropus alecto]
Length = 883
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 305 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGAD 363
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 364 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVESNKQ 412
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 413 YQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLEL 449
>gi|321468927|gb|EFX79910.1| hypothetical protein DAPPUDRAFT_304334 [Daphnia pulex]
Length = 834
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 29/176 (16%)
Query: 49 QLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKA----CKPALESSYI 103
+ VI D E G C+MQ++ + Y++D ++ + + C P I
Sbjct: 252 ETVIAVDLEAHSYRSFQGLTCLMQISTSSSDYIIDTLELWDQLQPLNEVFCNPK-----I 306
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
K+ H D + L FGI + N+ DT A L+ + +S LL Y
Sbjct: 307 VKIFHGADMDIQWLQRDFGIYVVNLFDTYHAAKLLGFAQ---------LSLSFLLR--HY 355
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
C + ++ ++ W RPL E MV A +D +L YIY M K L +
Sbjct: 356 CQVIADKQYQLAD--------WRIRPLPEQMVNYAREDTHYLGYIYEKMKKDLKMK 403
>gi|359689033|ref|ZP_09259034.1| ribonuclease D [Leptospira licerasiae serovar Varillal str.
MMD0835]
Length = 372
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 27/178 (15%)
Query: 55 DCEGVDLCRHG------SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIH 108
DC +D G +C++Q++ Y+ D I+ + + P E+ I K+ H
Sbjct: 10 DCLSIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIRLDD--LNGLGPLFENPNILKIFH 67
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
D +AL FG K N+ DT + L++ ++ S + L+ Y +
Sbjct: 68 SASDDIKALKRDFGFKFINIADTMFSSRLLDLEQN---------SLLYLV--EHYHKVKL 116
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
+KE+ W RPL + ++ AA D +L I+ M ++L ++ L AV
Sbjct: 117 SKKEQ--------KSNWEKRPLEKSQLQYAALDTVYLESIWTKMGEELGKRKLLDEAV 166
>gi|159482675|ref|XP_001699393.1| predicted protein [Chlamydomonas reinhardtii]
gi|158272844|gb|EDO98639.1| predicted protein [Chlamydomonas reinhardtii]
Length = 785
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 14/122 (11%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIA-YSLIEEQEGRKRSP--DDYISF 154
LE ++ K+++D + D+ AL+ ++G++L V D Q+A + + +EG +R+ + +
Sbjct: 64 LEDEHVPKLLYDVRSDAAALWSEYGVRLRGVTDLQLADVAARQAEEGARRAAWVEGLVRC 123
Query: 155 VG--LLADPR-YCGI--------SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR 203
+ L AD R G+ + R + Q WT RPLT + AA DVR
Sbjct: 124 LSRRLAADGRGGAGVPPRLADDLAAATAIAKRYHDGGNTQVWTQRPLTPELSEYAATDVR 183
Query: 204 FL 205
+L
Sbjct: 184 YL 185
>gi|432098121|gb|ELK28008.1| Exosome component 10 [Myotis davidii]
Length = 876
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
+DL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 300 AIDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDLY-ILNESLTDPAIVKVFHGAD 358
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S LL YC + ++
Sbjct: 359 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGRH-------SLDHLLK--HYCNVESNKQ 407
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 408 YQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLEL 444
>gi|359319087|ref|XP_535408.4| PREDICTED: exosome component 10 isoform 2 [Canis lupus familiaris]
Length = 886
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIVDTLELRSDMY-ILNESLTDPTIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCSVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLNYARDDTHYLLYIYDKMRLEL 455
>gi|424669527|ref|ZP_18106552.1| ribonuclease D [Stenotrophomonas maltophilia Ab55555]
gi|401071598|gb|EJP80109.1| ribonuclease D [Stenotrophomonas maltophilia Ab55555]
Length = 359
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 91/216 (42%), Gaps = 31/216 (14%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE +R IG D E + + L ++Q+A I L+D + G T A
Sbjct: 8 PAELDAYFQQRPTRIGLDTEFIRERTYWPQLALVQMAVGQDILLIDPLIPGMTEALAHWL 67
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
A ES ITKV+H D A + G+ + DTQI SL G + +
Sbjct: 68 ADES--ITKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLASIGGG--------MGYQK 117
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---- 212
L+A+ G++ + E R D W RPL+E ++ AADDV L + H+
Sbjct: 118 LVAE--ITGVALAKGET-----RSD---WMRRPLSESQLQYAADDVEHL-FALHDAIDAR 166
Query: 213 MKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPL 248
++ L +Q +L G R ND WP L
Sbjct: 167 LQALGRQQ--WLHDDGE---RLLASVANDDDRWPHL 197
>gi|90420956|ref|ZP_01228860.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
gi|90334734|gb|EAS48510.1| 3'-5' exonuclease [Aurantimonas manganoxydans SI85-9A1]
Length = 205
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 67/175 (38%), Gaps = 18/175 (10%)
Query: 52 IGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+ D E + L R LC++QL+ D V I G++ L+ TK+ H
Sbjct: 20 VAIDTETLGLDTRRDRLCVVQLSPGDGTADVVQIAKGQSEAPNITALLKDPAKTKIFHYA 79
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D ALY FG+ + T+IA L R D VG
Sbjct: 80 RFDVAALYHAFGVMTDGIFCTKIASRLTRTYTDRHGLKDLAREMVG-------------- 125
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
V + +Q W L++ V AA DV +L I + K+L ++ LA
Sbjct: 126 ---VDISKQQQSSDWAAETLSQAQVEYAASDVLYLHDIMGGLYKRLEREDRMELA 177
>gi|67970274|dbj|BAE01480.1| unnamed protein product [Macaca fascicularis]
Length = 673
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLEL-RSDMYILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVDSNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|449268441|gb|EMC79305.1| Exosome component 10, partial [Columba livia]
Length = 829
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 31/171 (18%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
+DL H G C+MQ++ +++D ++ + + I KV+H
Sbjct: 276 ALDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLEL-RSDMNILNETFTDPAIVKVLHGAD 334
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ L N+ DT A L+ GR S D + YC I ++
Sbjct: 335 SDVEWLQKDFGLYLVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNIDADKQ 383
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
++ W RPL E M++ A DD +L YIY + +++LW
Sbjct: 384 YQLAD--------WRIRPLPEEMIQYARDDTHYLLYIYDKV-----REALW 421
>gi|156121019|ref|NP_001095656.1| exosome component 10 [Bos taurus]
gi|154757487|gb|AAI51675.1| EXOSC10 protein [Bos taurus]
gi|296479174|tpg|DAA21289.1| TPA: exosome component 10 [Bos taurus]
Length = 702
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLEL-RSDMYILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCSVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|262199835|ref|YP_003271044.1| ribonuclease D [Haliangium ochraceum DSM 14365]
gi|262083182|gb|ACY19151.1| Ribonuclease D [Haliangium ochraceum DSM 14365]
Length = 400
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 26/120 (21%)
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI--EEQEGRKRSPDDYISFVGLLAD 160
+ V H K+D L +F I N DTQIA + + EQ G + D +
Sbjct: 83 VVSVAHAAKQDLGILAARFDIFAENFWDTQIAAAFVGMAEQIGYGKLVDALLG------- 135
Query: 161 PRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
V L + QF W RPL+ +R AADDVR+LP ++ ++ ++L++
Sbjct: 136 ---------------VQLDKASQFTKWLERPLSPAQLRYAADDVRYLPRVWAHLSQRLDE 180
>gi|255075175|ref|XP_002501262.1| predicted protein [Micromonas sp. RCC299]
gi|226516526|gb|ACO62520.1| predicted protein [Micromonas sp. RCC299]
Length = 332
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C++Q++ ++VDA++ + A P + + KV H
Sbjct: 58 AVDLEHHSYRSFQGFTCVIQVSTRRMDFVVDALELRGLIRDALGPVMADPRVMKVFHGAD 117
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D + L FGI + + DT A ++E P +++ L D YC + ++
Sbjct: 118 MDVQWLQRDFGIYVVGMFDTGQAARVLE-------LPSKGLAY---LLD-HYCSVKADKR 166
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
++ W RPL+E M+ A D L Y+Y + ++L+
Sbjct: 167 FQL--------ADWRVRPLSEEMISYARGDTHHLLYVYDRLRQQLD 204
>gi|428201084|ref|YP_007079673.1| ribonuclease D [Pleurocapsa sp. PCC 7327]
gi|427978516|gb|AFY76116.1| ribonuclease D [Pleurocapsa sp. PCC 7327]
Length = 210
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 65/160 (40%), Gaps = 18/160 (11%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QL P I G+T K +E++ ITK+ H + D L + FGI+
Sbjct: 44 LCLVQLCDPSGFVTAIRIAKGQTEAPNLKQLMEATNITKIFHFARFDLAQLRYNFGIETQ 103
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW- 185
+ T+IA L Y S GL Q+ E V + W
Sbjct: 104 PIFCTKIASKLART----------YTSNHGL-------KNLVQDLEGVELDKSSQSSDWG 146
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
LTE + AA+DVR+L + + L ++ W LA
Sbjct: 147 NAANLTEAQLSYAANDVRYLHGLRDKLTTMLKREDRWELA 186
>gi|402073127|gb|EJT68752.1| hypothetical protein GGTG_13682 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 261
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 13/178 (7%)
Query: 55 DCEGVDLCRHGSLCIM--------QLAFPDAIYLVDA-IQGGETVVKACKPALESSYITK 105
D EG +L R+G+L I+ + + D L DA + K LE + K
Sbjct: 9 DLEGRNLSRNGTLDILTALVRPTKKTSLIDVHTLGDAAFTTANGAGRTLKGILEDPDVPK 68
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
D + D+ AL+ ++L V D Q+ + + G K + V +P
Sbjct: 69 YFWDVRNDANALWSHHRVRLAGVTDVQLLEN--AARRGNKTRLWGLSAAVERHLNPPQEL 126
Query: 166 IS--YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
+S Q K+E+ L+R ++ RPLT+ +V A DV LP + +LN + L
Sbjct: 127 LSPWLQNKKEIAGLMRAGEDVFSCRPLTDRIVWYCAGDVAHLPALRGLYAGRLNARRL 184
>gi|154278130|ref|XP_001539887.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413472|gb|EDN08855.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 441
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Query: 17 PDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQL--AF 74
P+ K +DS+ +H + L L P S + D EG++L R GS+ I+ L
Sbjct: 27 PNIKLVDSLSTLHEL-----LENLRLIPKSSPPFFV--DLEGINLGRSGSISILSLYAVH 79
Query: 75 PDAIYLVDAIQGGETVVKACKPA--------LESSYITKVIHDCKRDSEALYFQFGIKLH 126
YLVD + G+ + +P +ES I KV+ D + +S+AL+ + I L
Sbjct: 80 KGITYLVDVYKLGKAAFSSPQPGQNTSLQGIMESPTIKKVMFDVRNESDALFSHYNIHLD 139
Query: 127 NVVDTQI 133
+ D Q+
Sbjct: 140 GIQDLQL 146
>gi|163803649|ref|ZP_02197513.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
gi|159172559|gb|EDP57420.1| cell division topological specificity factor MinE [Vibrio sp. AND4]
Length = 372
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G+ + E R D W RPLT+ + AA DV +L +Y ++ K+N
Sbjct: 122 VEE--YLGVELDKSES-----RTD---WMARPLTQKQLDYAAADVHYLMPLYEKLLDKVN 171
Query: 218 QQSLW 222
Q W
Sbjct: 172 QAGWW 176
>gi|345566704|gb|EGX49646.1| hypothetical protein AOL_s00078g135 [Arthrobotrys oligospora ATCC
24927]
Length = 254
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 24/211 (11%)
Query: 52 IGFDCEGVDLCRHGSLCIMQL-AFP-DAIYLVDAIQGGETVVKACKP---------ALES 100
I D EG+DL RHG + ++Q+ FP +++D G + P LE
Sbjct: 32 IYIDLEGIDLSRHGYISLLQIFLFPLSQNFILDIHTLGHSAFTTSSPDDPSRTFKSILED 91
Query: 101 SYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDY---ISFVGL 157
I V +D + D++ALY + I L NV+D Q+ + + G +R + I + +
Sbjct: 92 PNIPIVCYDIRADNDALYNLYSISLANVIDLQLLE--LATRHGSRRLLNGLSRSIQYYPI 149
Query: 158 L-ADPRYCGISYQEKEEVRVLLRQDP----QFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
L A +Y + + KE R L + + + RPL + ++ DV+ L ++
Sbjct: 150 LSASEKYDWV--EIKERGRRLFAPERGGSYEIFNSRPLPDDLLEYCVQDVQHLQKLWQYF 207
Query: 213 MKKLNQQ-SLWYLAVRGALYCRCFCINENDY 242
+L + S+W +R R + D+
Sbjct: 208 NSRLEKMDSIWRQKIRDETERRISLCRDRDF 238
>gi|156379680|ref|XP_001631584.1| predicted protein [Nematostella vectensis]
gi|156218627|gb|EDO39521.1| predicted protein [Nematostella vectensis]
Length = 855
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 41/192 (21%)
Query: 48 RQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ-GGETVVKACKPALESSYITKV 106
+Q VIG CEGV+L R+G +C + + + +YL D ++ G + + LE+ I KV
Sbjct: 243 KQRVIGVSCEGVNLSRYGKICWLLIGTREFVYLFDVLKLGASCFDEGLQEILENGNILKV 302
Query: 107 ----IHDCKRDSEALYFQFGIKLHNVVDTQIA--YSLIEEQEGRKRSPDDYISFVGLLAD 160
I+ +R E L +V+ +A Y + P + +SF
Sbjct: 303 ADIIIYKRERQGE---------LPQLVNGLVACLYEYLN-------MPPENMSF------ 340
Query: 161 PRYCGISYQEKEEVRVLLRQ-DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
++ RV Q D WT RPL E M+ AAA V +L + M++L +
Sbjct: 341 -----------QKYRVNQMQLDEAIWTRRPLPERMLDAAAKRVVYLRELRLAQMERLMAE 389
Query: 220 SLWYLAVRGALY 231
+ + + LY
Sbjct: 390 CIHGVNIYLGLY 401
>gi|328543996|ref|YP_004304105.1| ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
gi|326413740|gb|ADZ70803.1| Probable ribonuclease d protein [Polymorphum gilvum SL003B-26A1]
Length = 394
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A PD +VDA+ G + + + +TKV H ++D E +Y G+ H
Sbjct: 39 LCVIQMAGPDDAVIVDALADGLDLAPFLD-LMRNERVTKVFHAARQDIEIVYHLGGLIPH 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D IS+ L+ R G + W
Sbjct: 98 PLFDTQVAAMVC--------GFGDSISYDQLV--QRITGARIDKSSRF--------TDWA 139
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
RPLT+ + A DV +L +Y + L +Q
Sbjct: 140 RRPLTQKQLDYALADVTYLRDVYRFLKANLAEQ 172
>gi|85702967|ref|ZP_01034071.1| ribonuclease D [Roseovarius sp. 217]
gi|85671895|gb|EAQ26752.1| ribonuclease D [Roseovarius sp. 217]
Length = 386
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 30/161 (18%)
Query: 64 HGSLCIMQLAFP----DAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYF 119
+ LC++QLA P D+ LVD I+G + ++ + + KV H ++D E Y
Sbjct: 36 YSKLCLLQLAVPGKGDDSAVLVDPIEGEDMSMEPLYELFRDTSVVKVFHAARQDLEIFYV 95
Query: 120 QFGIKLHNVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVL 177
G+ + DTQ+A + EQ G Y + V +A +
Sbjct: 96 DAGVIPDPMFDTQVAAMVCGFGEQVG-------YETLVKRIA---------------KQT 133
Query: 178 LRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ + +F W+ RPLT+ A DV L +Y + KKL
Sbjct: 134 VDKSSRFTDWSRRPLTDAQKTYALADVTHLRVVYEFLAKKL 174
>gi|222053523|ref|YP_002535885.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
gi|221562812|gb|ACM18784.1| 3'-5' exonuclease [Geobacter daltonii FRC-32]
Length = 390
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 85/216 (39%), Gaps = 31/216 (14%)
Query: 6 SHQTHIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHG 65
+T + SD P ++ N L R+ ++ FD E L +
Sbjct: 3 KRRTFLQKQSDSTNSPAKGIIETQKDLN-------LLVEQLSRENILAFDLEADSLHHYT 55
Query: 66 -SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
+C++Q++ L+D + + P L I KV H D +LY FG++
Sbjct: 56 EKVCLIQVSNLSQTALIDPL--APVDLSPLAPVLADRGIRKVFHGADYDMRSLYRDFGLE 113
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD-PRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT IA + E+E VGL A + G+ +K + + D
Sbjct: 114 VCNMFDTMIACQFLGEKE------------VGLAAALKKRFGVELNKKYQ-----KAD-- 154
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W+ RP + M+ A D L +Y + ++L +
Sbjct: 155 -WSKRPFSAEMIEYAKMDTALLIRLYLQLEEELRAK 189
>gi|400288021|ref|ZP_10790053.1| 3'-5' exonuclease [Psychrobacter sp. PAMC 21119]
Length = 441
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 31/161 (19%)
Query: 67 LCIMQLAFPDAIYLVDA--IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
L ++QL D IYL+DA +Q G+ AL S + H C D Y G
Sbjct: 97 LALVQLNTGDHIYLLDAPQLQLGD-----FWQAL-SEVDVAIWHACGEDLGIFYLLSGCP 150
Query: 125 -LHNVVDTQIAYSLI--EEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQD 181
L N+ DTQIA S + + Q G +++ DD + ++ + Q
Sbjct: 151 PLTNIFDTQIALSYLTGQLQMGYQQALDDQL--------------------DMHIDKEQS 190
Query: 182 PQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
W RPL++ + A DDVRFLP +Y ++ +L +Q L+
Sbjct: 191 QSDWLQRPLSDEQEQYAIDDVRFLPALYLSLEYELKKQGLF 231
>gi|163868507|ref|YP_001609716.1| hypothetical protein Btr_1359 [Bartonella tribocorum CIP 105476]
gi|161018163|emb|CAK01721.1| Ribonuclease D [Bartonella tribocorum CIP 105476]
Length = 384
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + ++ + I KV H ++D E +Y+ G+
Sbjct: 40 LCLIQLASPDVTVLIDPI-APDIDLQPFFDLMIDKKIVKVFHSARQDIETIYYLGGVIPS 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQIA S+ D IS+ ++ ++C + +K +F
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIV---QHCTGHHLDKSS---------RFTD 138
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
W+ RPL+E + A DV +L +Y + K+L NQ++ W
Sbjct: 139 WSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRTHW 178
>gi|221121078|ref|XP_002157951.1| PREDICTED: exosome component 10-like [Hydra magnipapillata]
Length = 758
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G LC+MQ++ +++D + E + K I KV+H
Sbjct: 264 AVDLEHHSYRSFQGFLCLMQISTRFEDFIIDTLALREEMYK-INEIFSDPNILKVMHGAD 322
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L FG+ + N+ DT A + E D S LL+ +YC + Q++
Sbjct: 323 SDIGWLQRDFGVYVVNMFDTGQAARTLHE---------DRFSLAYLLS--KYCNVDAQKQ 371
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RP+ + M+ A +D +L Y+Y + +L
Sbjct: 372 YQLAD--------WRIRPIPKEMILYAQEDTHYLLYVYDILRNQL 408
>gi|359400250|ref|ZP_09193238.1| ribonuclease D [Novosphingobium pentaromativorans US6-1]
gi|357598399|gb|EHJ60129.1| ribonuclease D [Novosphingobium pentaromativorans US6-1]
Length = 414
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 18/150 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A + +D + G + ++ + KV H +D E ++ G H
Sbjct: 42 LCLVQIANTEEAAAIDPMAEGLDLSPLLDLLTDNEEVLKVFHAGGQDVEIIFNATGRTPH 101
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA I + E S + S++GL D G + + W+
Sbjct: 102 PIFDTQIAMMAISQSEQIGYS-NLVESWLGLTIDK---GARFTD--------------WS 143
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
RPLTE + A DV L I+ ++K+L
Sbjct: 144 RRPLTERQIEYAIGDVTHLSKIFPKILKRL 173
>gi|194383644|dbj|BAG59180.1| unnamed protein product [Homo sapiens]
Length = 679
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 26/161 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLEL-RSDMYILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVDSNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
++ W RPL E M+ A DD +L YIY M
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|198424231|ref|XP_002122101.1| PREDICTED: similar to exosome component 10 [Ciona intestinalis]
Length = 669
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 28/163 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQL+ Y+VD + + + I KV H
Sbjct: 140 AVDLEAHSFRSYQGITCLMQLSTRKTDYIVDTL-ALRANLNILNQVFTNPKIVKVFHGAD 198
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
+D + L FG+ + N+ DT A ++E R +Y+ YC + +K
Sbjct: 199 QDIKWLQRDFGVYVVNLFDTGQAARVLELGLSR-----EYLL-------KHYCKVESDKK 246
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214
+ + D W RPL++ M++ A +D +L YIY +MMK
Sbjct: 247 YQ-----KAD---WRERPLSKDMLKYAQEDTHYLLYIY-DMMK 280
>gi|291414300|ref|XP_002723398.1| PREDICTED: exosome component 10 [Oryctolagus cuniculus]
Length = 886
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + + +L + I KV H
Sbjct: 308 AVDLEHHSYRSFLGLTCLMQVSTRTEDFIIDTLEL-RSEMYLLNESLTNPTIVKVFHGAD 366
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 367 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCSVDSDKQ 415
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 416 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDRMRLEL 452
>gi|334140955|ref|YP_004534161.1| ribonuclease D [Novosphingobium sp. PP1Y]
gi|333938985|emb|CCA92343.1| ribonuclease D [Novosphingobium sp. PP1Y]
Length = 414
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 18/150 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A + +D + G + ++ + KV H +D E ++ G H
Sbjct: 42 LCLVQIANTEEAAAIDPMAEGLDLSPLLDLLTDNEEVLKVFHAGGQDVEIIFNATGRTPH 101
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA I + E S + S++GL D G + + W+
Sbjct: 102 PIFDTQIAMMAISQSEQIGYS-NLVESWLGLTIDK---GARFTD--------------WS 143
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
RPLTE + A DV L I+ ++K+L
Sbjct: 144 RRPLTERQIEYAIGDVTHLSKIFPKILKRL 173
>gi|149202482|ref|ZP_01879454.1| ribonuclease D [Roseovarius sp. TM1035]
gi|149143764|gb|EDM31798.1| ribonuclease D [Roseovarius sp. TM1035]
Length = 386
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 30/161 (18%)
Query: 64 HGSLCIMQLAFP----DAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYF 119
+ LC++Q+A P D LVD I G E ++ + + KV H ++D E +
Sbjct: 36 YSKLCLLQMAVPGADDDTAVLVDPIDGAEMSMEPLYELFRDTSVVKVFHAARQDLEIFHV 95
Query: 120 QFGIKLHNVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVL 177
G+ + DTQ+A + EQ G Y + V +A +
Sbjct: 96 DAGVIPDPLFDTQVAAMVCGFGEQVG-------YETLVKRIA---------------KQT 133
Query: 178 LRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ + +F W+ RPLTE A DV L IY + KKL
Sbjct: 134 VDKSSRFTDWSRRPLTEAQKVYALADVTHLRVIYEYLAKKL 174
>gi|407404412|gb|EKF29876.1| hypothetical protein MOQ_006321 [Trypanosoma cruzi marinkellei]
Length = 713
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 31/188 (16%)
Query: 35 SQLPAEFLEPSSERQLVIGFDCE----GVDLCRH------GSLCIMQLAFPDAIYLVDAI 84
+Q P F++ + + + V+ + VDL H G C+MQ++ L+D +
Sbjct: 209 AQCPLRFVDATVDLEEVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILIDCL 268
Query: 85 QGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
+ + + P +S I KV+H + D L FG+ L N DT IA + G
Sbjct: 269 KL-RSSMHLLAPVFLNSNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIALQTLHMPHG- 326
Query: 145 KRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
++F A +C + +K + W RP+ MV A D F
Sbjct: 327 -------LAF----AVDHFCQVKLNKKYQT--------ADWRIRPIPAEMVAYARQDTHF 367
Query: 205 LPYIYHNM 212
L Y+Y +
Sbjct: 368 LLYVYDRL 375
>gi|456736776|gb|EMF61502.1| Ribonuclease D [Stenotrophomonas maltophilia EPM1]
Length = 359
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 91/216 (42%), Gaps = 31/216 (14%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE +R IG D E + + L ++Q+A I L+D + G T A
Sbjct: 8 PAELDAYFQQRPTRIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMTEALAHWL 67
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
A ES ITKV+H D A + G+ + DTQI SL G + +
Sbjct: 68 ADES--ITKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGGG--------MGYQK 117
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---- 212
L+A+ G++ + E R D W RPL+E ++ AADDV L + H+
Sbjct: 118 LVAE--ITGVALAKGET-----RSD---WMRRPLSESQLQYAADDVEHL-FALHDAIDAR 166
Query: 213 MKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPL 248
++ L +Q +L G R ND WP L
Sbjct: 167 LQALGRQQ--WLHDDGE---RLLASVANDEDRWPHL 197
>gi|4505917|ref|NP_002676.1| exosome component 10 isoform 2 [Homo sapiens]
gi|179283|gb|AAB59352.1| PM-Scl autoantigen [Homo sapiens]
gi|11136976|emb|CAC15569.1| PM-scl autoantigen [Homo sapiens]
Length = 860
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 26/161 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVDSNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
++ W RPL E M+ A DD +L YIY M
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|332250403|ref|XP_003274341.1| PREDICTED: exosome component 10 [Nomascus leucogenys]
Length = 912
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 329 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 387
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 388 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 436
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ ++ ++ W RPL E M+ A DD +L YIY M +L
Sbjct: 437 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 479
>gi|410256430|gb|JAA16182.1| exosome component 10 [Pan troglodytes]
Length = 890
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 305 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 363
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 412
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 413 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|398348927|ref|ZP_10533630.1| ribonuclease III [Leptospira broomii str. 5399]
Length = 389
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 27/173 (15%)
Query: 55 DCEGVDLCRHG------SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIH 108
DC +D G +C++Q++ Y+ D I+ + V P E+ I K+ H
Sbjct: 27 DCISIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIRLAD--VSGLGPLFENPAILKIFH 84
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
D +AL F K N+ DT + L++ ++ S + L+ Y +
Sbjct: 85 SASDDIKALKRDFSFKFVNIADTMFSSRLLDLEQN---------SLLYLVE--HYHKVKL 133
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
+KE+ W RPL + ++ AA D +L I+ M ++L ++ L
Sbjct: 134 SKKEQ--------KSNWEKRPLDKSQLQYAALDTVYLESIWEKMREELAKRKL 178
>gi|190575218|ref|YP_001973063.1| ribonuclease D [Stenotrophomonas maltophilia K279a]
gi|190013140|emb|CAQ46772.1| putative ribonuclease D [Stenotrophomonas maltophilia K279a]
Length = 359
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 91/216 (42%), Gaps = 31/216 (14%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE +R IG D E + + L ++Q+A I L+D + G T A
Sbjct: 8 PAELDAYFQQRPTRIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMTEALAHWL 67
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
A ES ITKV+H D A + G+ + DTQI SL G + +
Sbjct: 68 ADES--ITKVMHSASEDLVAFRWACGVLPRPLFDTQIGASLAGIGGG--------MGYQK 117
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---- 212
L+A+ G++ + E R D W RPL+E ++ AADDV L + H+
Sbjct: 118 LVAE--ITGVALAKGET-----RSD---WMRRPLSESQLQYAADDVEHL-FALHDAIDAR 166
Query: 213 MKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPL 248
++ L +Q +L G R ND WP L
Sbjct: 167 LQALGRQQ--WLHDDGE---RLLASVANDEDRWPHL 197
>gi|410215484|gb|JAA04961.1| exosome component 10 [Pan troglodytes]
Length = 890
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 305 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 363
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 412
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 413 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|380813854|gb|AFE78801.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|383419273|gb|AFH32850.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|384947748|gb|AFI37479.1| exosome component 10 isoform 1 [Macaca mulatta]
Length = 882
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVDSNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|402852919|ref|XP_003891154.1| PREDICTED: exosome component 10 [Papio anubis]
Length = 844
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 265 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 323
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 324 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GR-HSLDHLLKL--------YCN 372
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ ++ ++ W RPL E M+ A DD +L YIY M +L
Sbjct: 373 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 415
>gi|108997029|ref|XP_001103741.1| PREDICTED: exosome component 10-like isoform 4 [Macaca mulatta]
gi|355557539|gb|EHH14319.1| hypothetical protein EGK_00224 [Macaca mulatta]
Length = 884
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVDSNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|398343905|ref|ZP_10528608.1| ribonuclease III [Leptospira inadai serovar Lyme str. 10]
Length = 389
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 27/173 (15%)
Query: 55 DCEGVDLCRHG------SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIH 108
DC +D G +C++Q++ Y+ D I+ + V P E+ I K+ H
Sbjct: 27 DCISIDTESSGYYTYYSKVCLIQISSKGKNYIFDPIRLAD--VSGLGPLFENPAILKIFH 84
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
D +AL F K N+ DT + L++ ++ S + L+ Y +
Sbjct: 85 SASDDIKALKRDFSFKFVNIADTMFSSRLLDLEQN---------SLLYLV--EHYHKVKL 133
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
+KE+ W RPL + ++ AA D +L I+ M ++L ++ L
Sbjct: 134 SKKEQ--------KSNWEKRPLDKSQLQYAALDTVYLESIWEKMREELAKRKL 178
>gi|326521328|dbj|BAJ96867.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 906
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 27/161 (16%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + + KV+H RD L FGI
Sbjct: 301 QGLTCLMQISTRTEDFIVDTLKLRNCLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGI 360
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ D S LL +CG++ YQ +
Sbjct: 361 YVCNLFDTGQASRILQM---------DRNSLEHLLQ--YFCGVTANKEYQSAD------- 402
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL + M + A +D +L YIY M +L +S
Sbjct: 403 -----WRLRPLPDEMTKYAREDTHYLLYIYDLMRLRLVNES 438
>gi|254522754|ref|ZP_05134809.1| ribonuclease D [Stenotrophomonas sp. SKA14]
gi|219720345|gb|EED38870.1| ribonuclease D [Stenotrophomonas sp. SKA14]
Length = 359
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 90/216 (41%), Gaps = 31/216 (14%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE +R IG D E + + L ++Q+A I L+D + G T +A P
Sbjct: 8 PAELDAYFQQRPSRIGLDTEFIRERTFWPQLALVQMAVGRDILLIDPLIPGMT--EALAP 65
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
L I KV+H D A + G+ + DTQI SL G + +
Sbjct: 66 WLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGGG--------MGYQK 117
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---- 212
L+A+ G++ + E R D W RPL+E ++ AADDV L + H+
Sbjct: 118 LVAE--ITGVALAKGET-----RSD---WMRRPLSESQLQYAADDVEHL-FALHDAIGAR 166
Query: 213 MKKLNQQSLWYLAVRGALYCRCFCINENDYVDWPPL 248
++ L +Q +L G R ND WP L
Sbjct: 167 LQALGRQQ--WLHDDGE---RLLASVANDEDRWPHL 197
>gi|358383326|gb|EHK20993.1| hypothetical protein TRIVIDRAFT_137858, partial [Trichoderma virens
Gv29-8]
Length = 218
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAF--PDAIYLVDAIQGGETV-------VKACKPALESSY 102
I D EG L R+ ++ I+Q+ IYL+D GE +K + L+S
Sbjct: 24 IYMDLEGAPLSRYDTISILQIHVHPTKTIYLIDVQSLGEKCFSTPGKCLKTLRDILKSPL 83
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADP- 161
I KV D + DS+AL+ F I L V+D Q+ RKR S V + D
Sbjct: 84 IPKVFFDVRSDSDALFALFTITLDGVLDLQLM-EFATRSVLRKRFVRSLTSCV--MNDSP 140
Query: 162 ---RYCGISYQEKEEVRVLLRQDP----QFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214
KE+ R+L + RPL + ++R A DV +P ++
Sbjct: 141 LSSAKKSSWKSVKEQGRLLFTPKSGGSYEVLNERPLRQDILRYCAQDVSVMPVLWSVYDS 200
Query: 215 KLNQQ 219
K+ Q+
Sbjct: 201 KITQE 205
>gi|410350403|gb|JAA41805.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 305 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 363
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 412
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 413 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|355744909|gb|EHH49534.1| hypothetical protein EGM_00210 [Macaca fascicularis]
Length = 887
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 329 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 387
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 388 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 436
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ ++ ++ W RPL E M+ A DD +L YIY M +L
Sbjct: 437 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 479
>gi|343962561|dbj|BAK62868.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 305 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 363
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 412
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 413 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|206598216|gb|ACI16020.1| exosome subunit Rrp6P [Bodo saltans]
Length = 741
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 28/165 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQL+ Y+VD ++ + + + L+++ I KV H K
Sbjct: 242 AVDLEHHDFRSFQGITCLMQLSTRSEDYIVDVLRLRSHMHRLNRVFLDTN-ILKVFHGAK 300
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L FG+ + N+ DT IA + ++ A +CG+ +K
Sbjct: 301 EDVRWLQKDFGLYVANMFDTGIALQTL------------HMPHSLAFAVDHFCGVRLDKK 348
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ W RP+ M+ A D +L Y+ H+ +K L
Sbjct: 349 YQT--------ADWRIRPVPSEMIHYARQDTHYLLYV-HDRLKAL 384
>gi|357146328|ref|XP_003573952.1| PREDICTED: exosome component 10-like [Brachypodium distachyon]
Length = 906
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 19/157 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + + + KV+H RD L FGI
Sbjct: 300 QGLTCLMQISTRTEDFIVDTLKLRKYLGENLREVFQDPTKKKVMHGAGRDIIWLQRDFGI 359
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A ++ Q R F G++A+ Y
Sbjct: 360 YVCNLFDTGQASRIL--QMDRNSLEHLLHHFCGVVANKEYQSAD---------------- 401
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL + M + A +D +L YIY M +L +S
Sbjct: 402 -WRLRPLPDEMTKYAREDTHYLLYIYDLMRLRLVNES 437
>gi|50301240|ref|NP_001001998.1| exosome component 10 isoform 1 [Homo sapiens]
gi|8928564|sp|Q01780.2|EXOSX_HUMAN RecName: Full=Exosome component 10; AltName: Full=Autoantigen
PM/Scl 2; AltName: Full=P100 polymyositis-scleroderma
overlap syndrome-associated autoantigen; AltName:
Full=Polymyositis/scleroderma autoantigen 100 kDa;
Short=PM/Scl-100; AltName: Full=Polymyositis/scleroderma
autoantigen 2
gi|35555|emb|CAA46904.1| PM/Scl 100kD nucleolar protein [Homo sapiens]
gi|25140242|gb|AAH39901.1| Exosome component 10 [Homo sapiens]
gi|49257470|gb|AAH73788.1| Exosome component 10 [Homo sapiens]
gi|119592085|gb|EAW71679.1| exosome component 10, isoform CRA_c [Homo sapiens]
gi|190690525|gb|ACE87037.1| exosome component 10 protein [synthetic construct]
gi|190691893|gb|ACE87721.1| exosome component 10 protein [synthetic construct]
gi|261858988|dbj|BAI46016.1| exosome component 10 [synthetic construct]
Length = 885
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 305 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 363
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 412
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 413 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|380813852|gb|AFE78800.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|383419271|gb|AFH32849.1| exosome component 10 isoform 1 [Macaca mulatta]
gi|384947746|gb|AFI37478.1| exosome component 10 isoform 1 [Macaca mulatta]
Length = 884
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVDSNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|194366535|ref|YP_002029145.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
gi|194349339|gb|ACF52462.1| ribonuclease D [Stenotrophomonas maltophilia R551-3]
Length = 358
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 25/188 (13%)
Query: 31 VTNASQLPAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGET 89
+T ++L A F +R IG D E + + L ++Q+A I L+D + G
Sbjct: 5 ITTPTELDAYF----QQRPSRIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPG-- 58
Query: 90 VVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPD 149
+ +A P L I KV+H D A + G+ + DTQI SL G
Sbjct: 59 MAEALAPWLADESIIKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGGG------ 112
Query: 150 DYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
+ + L+A+ G++ + E R D W RPL+E ++ AADDV L ++
Sbjct: 113 --MGYQKLVAE--ITGVALAKGET-----RSD---WMRRPLSESQLQYAADDVEHLFAMH 160
Query: 210 HNMMKKLN 217
+ KL
Sbjct: 161 DAIDAKLQ 168
>gi|297282176|ref|XP_001103657.2| PREDICTED: exosome component 10-like isoform 3 [Macaca mulatta]
Length = 884
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 329 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 387
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 388 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 436
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ ++ ++ W RPL E M+ A DD +L YIY M +L
Sbjct: 437 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 479
>gi|296206702|ref|XP_002750328.1| PREDICTED: exosome component 10 isoform 2 [Callithrix jacchus]
Length = 885
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L + I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRMEDFIIDTLELRSDMY-ILNESLTNPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|296206700|ref|XP_002750327.1| PREDICTED: exosome component 10 isoform 1 [Callithrix jacchus]
Length = 860
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L + I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRMEDFIIDTLELRSDMY-ILNESLTNPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|119592083|gb|EAW71677.1| exosome component 10, isoform CRA_a [Homo sapiens]
Length = 899
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 329 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 387
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 388 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 436
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 437 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 475
>gi|110289135|gb|AAP53938.2| Nucleolar protein, putative, expressed [Oryza sativa Japonica
Group]
Length = 902
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 19/157 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + + KV+H RD L FGI
Sbjct: 296 QGLTCLMQISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGI 355
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A +++ D S LL +CG++ ++ +
Sbjct: 356 YVCNLFDTGQASRILQM---------DRNSLEHLLH--HFCGVTANKEYQS--------A 396
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL + M++ A +D +L YIY M +L ++S
Sbjct: 397 DWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKES 433
>gi|194376518|dbj|BAG57405.1| unnamed protein product [Homo sapiens]
Length = 529
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 26/161 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVDSNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
++ W RPL E M+ A DD +L YIY M
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|410215482|gb|JAA04960.1| exosome component 10 [Pan troglodytes]
gi|410256428|gb|JAA16181.1| exosome component 10 [Pan troglodytes]
gi|410289248|gb|JAA23224.1| exosome component 10 [Pan troglodytes]
Length = 885
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 305 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 363
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 364 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 412
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 413 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|395778089|ref|ZP_10458602.1| ribonuclease D [Bartonella elizabethae Re6043vi]
gi|423715652|ref|ZP_17689876.1| ribonuclease D [Bartonella elizabethae F9251]
gi|395418398|gb|EJF84725.1| ribonuclease D [Bartonella elizabethae Re6043vi]
gi|395429779|gb|EJF95840.1| ribonuclease D [Bartonella elizabethae F9251]
Length = 384
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + ++A + I KV H ++D E +Y+ G+
Sbjct: 40 LCLIQLASPDVTVLIDPI-APDIDLQAFFDLMIDKKIVKVFHSARQDIETIYYLGGVIPS 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQIA S+ D IS+ ++ + C + +K +F
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIV---QRCTGHHLDKSS---------RFTD 138
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
W+ RPL+E + A DV L +Y + K+L NQ++ W
Sbjct: 139 WSCRPLSEKQLLYAVADVTHLRDVYLLLKKRLEKNQRTHW 178
>gi|332807618|ref|XP_001136533.2| PREDICTED: exosome component 10 isoform 4 [Pan troglodytes]
Length = 909
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 329 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 387
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 388 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GR-HSLDHLLKL--------YCN 436
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 437 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 475
>gi|119592084|gb|EAW71678.1| exosome component 10, isoform CRA_b [Homo sapiens]
Length = 884
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 329 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 387
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 388 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 436
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 437 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 475
>gi|426327783|ref|XP_004024690.1| PREDICTED: exosome component 10 [Gorilla gorilla gorilla]
Length = 909
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 329 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 387
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 388 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GR-HSLDHLLKL--------YCN 436
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 437 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 475
>gi|397503016|ref|XP_003822132.1| PREDICTED: exosome component 10 [Pan paniscus]
Length = 909
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + +L I K
Sbjct: 329 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVK 387
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 388 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNL--GR-HSLDHLLKL--------YCN 436
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ ++ W RPL E M+ A DD +L YIY M
Sbjct: 437 VDSNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 475
>gi|343501910|ref|ZP_08739777.1| ribonuclease D [Vibrio tubiashii ATCC 19109]
gi|418480461|ref|ZP_13049519.1| ribonuclease D [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342816339|gb|EGU51238.1| ribonuclease D [Vibrio tubiashii ATCC 19109]
gi|384571853|gb|EIF02381.1| ribonuclease D [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 397
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 29/204 (14%)
Query: 23 DSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLV 81
+ +V I+T +QL + + S+ + V+ D E V + L ++QL + L+
Sbjct: 24 EKLVNYQIITQTAQL--DTVCQSARQADVVMLDTEFVRTRTYYPQLGLIQLFDGQNLSLI 81
Query: 82 DAIQGGETVVKACKPALE---SSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLI 138
D TV++ P +E + + KV+H C D E + F + +VDTQ+ + +
Sbjct: 82 DP-----TVIEDMAPFVELLKDTSVLKVLHACGEDLEVFHNSFECLPYPMVDTQLMAAFL 136
Query: 139 EEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAA 198
G S F L+ Y G+ + E R D W RPLT+ + A
Sbjct: 137 ----GHGLS----TGFAALVES--YLGVELDKSES-----RTD---WLARPLTDKQLEYA 178
Query: 199 ADDVRFLPYIYHNMMKKLNQQSLW 222
A DV +L +Y + +K+ Q W
Sbjct: 179 AADVYYLQPLYEQLFEKITQAGWW 202
>gi|401429626|ref|XP_003879295.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495545|emb|CBZ30850.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 413
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 78 IYLVDAIQGGETV-VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYS 136
++L D + V V+A + I K+ DC+RD EAL Q + V+D Q+ ++
Sbjct: 140 VFLFDVLSLSVPVFVQAIRSVFHDETIRKLFFDCRRDIEALSTQMDLTPKRVLDLQLLFT 199
Query: 137 LIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV--RVLLRQDPQFWTYRPLTELM 194
+ + + RS + +L GI QE + ++ D W RPL E
Sbjct: 200 AV---QWKLRSVNRRSGMTYVLKS--VAGIHRQEGDSAVQTAMMVGDRPVWDTRPLPEHF 254
Query: 195 VRAAADDVRFLPYIYHNMMKKLNQQ 219
+ AADDVR + ++ L QQ
Sbjct: 255 LEYAADDVRHI-HLLSTYFPSLTQQ 278
>gi|261855126|ref|YP_003262409.1| ribonuclease D [Halothiobacillus neapolitanus c2]
gi|261835595|gb|ACX95362.1| ribonuclease D [Halothiobacillus neapolitanus c2]
Length = 374
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 25/152 (16%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A PDAI+L+D + + L + V H ++D E +Y G
Sbjct: 51 LCLVQIATPDAIWLIDPL---AVPLAPLWHELNRTSSPLVFHAAEQDLELIYLDSGALPQ 107
Query: 127 NVVDTQIAYSLIE--EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ D+QIA + + EQ G Y + V L V + Q
Sbjct: 108 TLRDSQIAAAFLGLGEQIG-------YANLVNRLL-------------HVELDKSQSRTN 147
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPLT AADDVRFL +Y + ++L
Sbjct: 148 WAQRPLTAEQQHYAADDVRFLRSMYPLLREQL 179
>gi|395779818|ref|ZP_10460287.1| ribonuclease D [Bartonella washoensis 085-0475]
gi|395420193|gb|EJF86478.1| ribonuclease D [Bartonella washoensis 085-0475]
Length = 384
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + +K + I KV H ++D E +Y GI +
Sbjct: 40 LCLIQLASPDTTVLIDPI-ASDIDLKPFFDLMADKKIVKVFHAARQDIETIYHLGGIIPY 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQIA S+ D IS+ ++ + C + +K +F
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIV---QRCTGHHIDKSS---------RFTD 138
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
W+ RPL+E + A DV +L IY + K+L N+++ W
Sbjct: 139 WSCRPLSEKQLLYALADVTYLRDIYLLLKKQLEKNKRTHW 178
>gi|335290494|ref|XP_003356194.1| PREDICTED: exosome component 10 isoform 2 [Sus scrofa]
Length = 861
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 26/161 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCSVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
++ W RPL E M+ A DD +L YIY M
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|335290492|ref|XP_003127631.2| PREDICTED: exosome component 10 isoform 1 [Sus scrofa]
Length = 886
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 26/161 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCSVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
++ W RPL E M+ A DD +L YIY M
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKM 451
>gi|222612881|gb|EEE51013.1| hypothetical protein OsJ_31642 [Oryza sativa Japonica Group]
Length = 877
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 19/157 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + + KV+H RD L FGI
Sbjct: 271 QGLTCLMQISTRTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFGI 330
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A +++ D S LL +CG++ ++ +
Sbjct: 331 YVCNLFDTGQASRILQM---------DRNSLEHLLH--HFCGVTANKEYQS--------A 371
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL + M++ A +D +L YIY M +L ++S
Sbjct: 372 DWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRLVKES 408
>gi|85860425|ref|YP_462627.1| ribonuclease D [Syntrophus aciditrophicus SB]
gi|85723516|gb|ABC78459.1| ribonuclease D [Syntrophus aciditrophicus SB]
Length = 339
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+ Y+ D G + ++ +P + KV H D L +G +
Sbjct: 94 LCLVQVRASKRTYVFDPFNGID--LQFLRPYFADPRLLKVTHAGDNDIRILKRDYGFEFR 151
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
N+ DT A ++ Q Y++ ++ +Y G+ E E+ + + R W
Sbjct: 152 NIFDTHRAAHMLGSQ---------YLALSSII--EQYLGV---EIEKTKKMQRSK---WE 194
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
RPL+E +R A D +L +Y ++ +KL+ + +
Sbjct: 195 ARPLSEGQLRYAVQDTAYLADLYRHLNEKLSLKGM 229
>gi|434404004|ref|YP_007146889.1| ribonuclease D [Cylindrospermum stagnale PCC 7417]
gi|428258259|gb|AFZ24209.1| ribonuclease D [Cylindrospermum stagnale PCC 7417]
Length = 209
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QL P+ I G+T K LE++ I KV H
Sbjct: 27 IAVDTETMGLLPQRDRLCLVQLCNPEGNVTAIRIAKGQTTAPNLKKLLEAAQIHKVFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L GI++ + T+IA L R GL QE
Sbjct: 87 RFDIATLRHNLGIQVQPIFCTKIASKLARTYTNRH----------GL-------KEVVQE 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E+V + W L++ + AA+DVR+L + + L ++ W LA
Sbjct: 130 LEQVELDKSAQSSDWGNATNLSDTQLNYAANDVRYLLSVRRKLTAMLQREQRWELA 185
>gi|157876102|ref|XP_001686412.1| putative exosome subunit rrp6p homologue [Leishmania major strain
Friedlin]
gi|68129486|emb|CAJ08029.1| putative exosome subunit rrp6p homologue [Leishmania major strain
Friedlin]
Length = 742
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 23/166 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C+MQ++ + ++VD ++ + + A P + I KV+H
Sbjct: 254 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL-RSSMGALAPVFLNPSILKVLHGA 312
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L F + + N+ DT +A + ++ + A +C + +
Sbjct: 313 REDIRWLQKDFSLYVVNLFDTGVALQTL------------HMPYSLAFAVDHFCQVKLNK 360
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
K + W RPL+ MV A D FL Y+ H+ +K L
Sbjct: 361 KYQT--------ADWRVRPLSAEMVHYARQDTHFLLYV-HDRLKAL 397
>gi|444428716|ref|ZP_21224024.1| ribonuclease D [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444238052|gb|ELU49683.1| ribonuclease D [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 372
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + + L ++QL + L+D + T + + L+ + + KV+H
Sbjct: 24 VVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTE--LTDMTSFVELLKDTSVLKVLHA 81
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E FG +VDTQ+ + + G S F L+ + Y G+
Sbjct: 82 CGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATLVEE--YLGVELD 131
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
+ E R D W RPLT+ + AA DV +L +Y ++ K+N+ W+ AV+
Sbjct: 132 KSES-----RTD---WMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAG-WWEAVQQE 182
Query: 230 ----LYCRCFCIN-ENDYVD 244
+ R +N EN Y+D
Sbjct: 183 SDLLVSKRIRSVNEENAYLD 202
>gi|87122723|ref|ZP_01078598.1| Ribonuclease D [Marinomonas sp. MED121]
gi|86162020|gb|EAQ63310.1| Ribonuclease D [Marinomonas sp. MED121]
Length = 387
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
+ + + KV H C D E G+ DTQ+A + + Q +S+V L
Sbjct: 84 MTNQSVVKVFHACSEDLEVFDRLLGVVPSPFYDTQVAEAYVSGQWS--------LSYVKL 135
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ ++Y+ E + R D W RPLTE R AA DV L +YH M L+
Sbjct: 136 I-------LAYKNIEIAKDETRSD---WLKRPLTEAQKRYAALDVIHLIDVYHTQMDALD 185
Query: 218 QQSLWYLAVR-GALYCRCFCINENDYVDW 245
++++ A+ GA + +N + +W
Sbjct: 186 KKNMLAWALEDGAAIIHQYRLNSDPEQNW 214
>gi|297848030|ref|XP_002891896.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
lyrata]
gi|297337738|gb|EFH68155.1| hypothetical protein ARALYDRAFT_337734 [Arabidopsis lyrata subsp.
lyrata]
Length = 681
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD + + + + + KV+H D L FGI
Sbjct: 243 QGLTCLMQISTRTEDYIVDTFKLWDHIGPHLRELFKDPKKKKVMHGADHDIIWLQRDFGI 302
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A +++ + RK S LL YCG++ D Q
Sbjct: 303 YVCNLFDTGQASRVLKLE--RK-------SLEFLLK--HYCGVA------------ADKQ 339
Query: 184 F----WTYRPLTELMVRAAADDVRFLPYIYHNM------MKKLNQQS 220
+ W RPL ++M R A +D +L YIY M M K ++QS
Sbjct: 340 YQNADWRIRPLPDVMTRYAREDTHYLLYIYDVMRIDLHTMAKEDEQS 386
>gi|424513045|emb|CCO66629.1| exosome component 10 [Bathycoccus prasinos]
Length = 911
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 25/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C++Q++ + ++VDA++ + A E+ KV H
Sbjct: 258 AVDLEHHSYRTYRGFTCLIQISTREQDFVVDALRLRHLIGPALGRHFENEEKLKVFHGAN 317
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L FGI + N+ DT A ++E SF +YCGI ++K
Sbjct: 318 SDMIWLQRDFGIYVVNMFDTGQAARILE-----------LPSFGLAYLLKQYCGIKAEKK 366
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL+ M+ A D L Y++ + ++L
Sbjct: 367 YQL--------ADWRLRPLSREMINYARSDTHSLLYVHDRLKQEL 403
>gi|395793332|ref|ZP_10472737.1| ribonuclease D [Bartonella vinsonii subsp. arupensis Pm136co]
gi|395431646|gb|EJF97664.1| ribonuclease D [Bartonella vinsonii subsp. arupensis Pm136co]
Length = 384
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + + A + ITKV H ++D E +Y G+ +
Sbjct: 40 LCLIQLASPDVTVLIDPI-AQDINLHAFFDLMVDKKITKVFHAARQDIETIYHLGGVIPY 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQIA S+ D IS+ ++ + C + +K +F
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIV---QRCTGHHIDKSS---------RFTD 138
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
W+ RPL+E + A DV +L +Y + K+L N+++ W
Sbjct: 139 WSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEENERTHW 178
>gi|323453102|gb|EGB08974.1| hypothetical protein AURANDRAFT_63530 [Aureococcus anophagefferens]
Length = 549
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 74/175 (42%), Gaps = 19/175 (10%)
Query: 53 GFDCEGVDLCRHGS------LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKV 106
G D GVDL H C++Q++ D Y+VDA+ ++A PA I KV
Sbjct: 225 GVDVFGVDLEAHAEHSYESIACLVQISTADVDYVVDAL-ALRFELRALAPAFADPNIRKV 283
Query: 107 IHDCKR-DSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
H C+ D L FGI + NV DTQ A G + +GL+A G
Sbjct: 284 FHACQGVDIPRLQRDFGIFVVNVFDTQEAARCAARVLG---------APLGLVALYASAG 334
Query: 166 -ISYQEKEEVRVLLRQDPQF-WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
IS ++E+ L R W RPL+ + A D R L + + ++L
Sbjct: 335 VISTARRDELESLKRAYQNCDWRSRPLSPAQLEYAVCDARHLVDLEAYLNRELRH 389
>gi|240254568|ref|NP_850189.5| RRP6-like protein 3 [Arabidopsis thaliana]
gi|330253588|gb|AEC08682.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 891
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G ++Q++ + +LVD I V+ +P I KV H D L F I
Sbjct: 155 GFTALIQISTHEEDFLVDTI-ALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIY 213
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A ++ + P ++++ CG++ ++L R+D
Sbjct: 214 VVNMFDTAKACEVLSK-------PQRSLAYLL----ETVCGVATN-----KLLQRED--- 254
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL+E MVR A D +L YI ++ +L Q
Sbjct: 255 WRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQ 288
>gi|407850984|gb|EKG05126.1| hypothetical protein TCSYLVIO_003804 [Trypanosoma cruzi]
Length = 713
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 31/188 (16%)
Query: 35 SQLPAEFLEPSSERQLVIGFDCE----GVDLCRH------GSLCIMQLAFPDAIYLVDAI 84
+Q P F++ + + + V+ + VDL H G C+MQ++ L+D +
Sbjct: 209 AQCPLRFVDATVDLEEVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILIDCL 268
Query: 85 QGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
+ +++ P + I KV+H + D L FG+ L N DT IA + G
Sbjct: 269 KL-RSLMHLLAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIALQTLHMPHG- 326
Query: 145 KRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
++F A +C + +K + W RP+ MV A D F
Sbjct: 327 -------LAF----AVDHFCQVKLDKKYQT--------ADWRIRPIPAEMVTYARQDTHF 367
Query: 205 LPYIYHNM 212
L Y+Y +
Sbjct: 368 LLYVYDRL 375
>gi|160892403|gb|ABX52081.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 892
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G ++Q++ + +LVD I V+ +P I KV H D L F I
Sbjct: 155 GFTALIQISTHEEDFLVDTI-ALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIY 213
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A ++ + P ++++ CG++ ++L R+D
Sbjct: 214 VVNMFDTAKACEVLSK-------PQRSLAYLL----ETVCGVATN-----KLLQRED--- 254
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL+E MVR A D +L YI ++ +L Q
Sbjct: 255 WRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQ 288
>gi|423713103|ref|ZP_17687363.1| ribonuclease D [Bartonella vinsonii subsp. arupensis OK-94-513]
gi|395424729|gb|EJF90909.1| ribonuclease D [Bartonella vinsonii subsp. arupensis OK-94-513]
Length = 384
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 25/160 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + + A + ITKV H ++D E +Y G+ +
Sbjct: 40 LCLIQLASPDVTVLIDPI-AQDINLHAFFDLMVDKKITKVFHAARQDIETIYHLGGVIPY 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQIA S+ D IS+ ++ + C + +K +F
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIV---QRCTGHHIDKSS---------RFTD 138
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
W+ RPL+E + A DV +L +Y + K+L N+++ W
Sbjct: 139 WSCRPLSEKQLLYALADVTYLRDVYLLLKKQLEENERTHW 178
>gi|167392672|ref|XP_001740248.1| exosome complex exonuclease RRP6 [Entamoeba dispar SAW760]
gi|165895708|gb|EDR23337.1| exosome complex exonuclease RRP6, putative [Entamoeba dispar
SAW760]
Length = 517
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
+G +C++Q++ + Y++D I +++ P + I KV H C D L + FG+
Sbjct: 222 YGFVCLLQISTRSSDYIIDTITLRDSITLLNDP-FTNPNIEKVFHGCDFDMIWLSYNFGL 280
Query: 124 KLHNVVDT-QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
+ N +D+ Q A +L + + S LL +YC + +K ++
Sbjct: 281 YVVNCIDSGQCARALKLQ----------HFSLKYLLQ--KYCNVDADKKYQLAD------ 322
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYI 208
W RPLT+ M+ A D +L YI
Sbjct: 323 --WRLRPLTKEMIEYARGDTHYLLYI 346
>gi|334184634|ref|NP_001189656.1| RRP6-like protein 3 [Arabidopsis thaliana]
gi|330253589|gb|AEC08683.1| RRP6-like protein 3 [Arabidopsis thaliana]
Length = 872
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G ++Q++ + +LVD I V+ +P I KV H D L F I
Sbjct: 155 GFTALIQISTHEEDFLVDTI-ALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIY 213
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A ++ + P ++++ CG++ ++L R+D
Sbjct: 214 VVNMFDTAKACEVLSK-------PQRSLAYLL----ETVCGVATN-----KLLQRED--- 254
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL+E MVR A D +L YI ++ +L Q
Sbjct: 255 WRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQ 288
>gi|407070822|ref|ZP_11101660.1| ribonuclease D [Vibrio cyclitrophicus ZF14]
Length = 372
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 21/176 (11%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + L ++QL + + L+D I GE + L+ + + KV+H
Sbjct: 24 VVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIALGE--MTPFVGLLKDASVLKVLHA 81
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E FG +VDTQI + + G S F L+++ + G+
Sbjct: 82 CGEDLEVFQNAFGCTPTPMVDTQIMAAFL----GHGLS----TGFAALVSE--FVGVDLD 131
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ E R D W RPL++ + AA DV +L +Y+ +++K+ + W A
Sbjct: 132 KSES-----RTD---WLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAA 179
>gi|407036010|gb|EKE37956.1| exosome component 10, putative [Entamoeba nuttalli P19]
Length = 517
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
+G +C++Q++ + Y++D I +++ P + I KV H C D L + FG+
Sbjct: 222 YGFVCLLQISTRSSDYIIDTITLRDSITLLNDP-FTNPNIEKVFHGCDFDMIWLSYNFGL 280
Query: 124 KLHNVVDT-QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
+ N +D+ Q A +L + + S LL +YC + +K ++
Sbjct: 281 YVVNCIDSGQCARALKLQ----------HFSLKYLLQ--KYCNVDADKKYQLAD------ 322
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYI 208
W RPLT+ M+ A D +L YI
Sbjct: 323 --WRLRPLTKEMIEYARGDTHYLLYI 346
>gi|404498237|ref|YP_006722343.1| ribonuclease D [Geobacter metallireducens GS-15]
gi|418065969|ref|ZP_12703338.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
gi|78195834|gb|ABB33601.1| ribonuclease D, putative [Geobacter metallireducens GS-15]
gi|373561476|gb|EHP87711.1| 3'-5' exonuclease [Geobacter metallireducens RCH3]
Length = 382
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 73/181 (40%), Gaps = 30/181 (16%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
+C++Q P +VD + + A P + I KV H D +L+ FGI++
Sbjct: 45 KVCLIQFTVPGLAAIVDPLAVADLAPLA--PVFANPSIRKVFHGADYDIRSLHRDFGIEV 102
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF- 184
+N+ DT IA + E+E GL A R R + D Q+
Sbjct: 103 NNLFDTMIACQFLGERE------------FGLAAVLRK-----------RFGVELDKQYQ 139
Query: 185 ---WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS-LWYLAVRGALYCRCFCINEN 240
W+ RPLT M+ AA D L + + +L ++ + ++ AL R +
Sbjct: 140 RADWSRRPLTAGMIEYAAKDTTLLIELCGRLEAELREKGRIGWVEEECALLARVRVAQRS 199
Query: 241 D 241
D
Sbjct: 200 D 200
>gi|365538247|ref|ZP_09363422.1| ribonuclease D [Vibrio ordalii ATCC 33509]
Length = 371
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E + FG +VDTQ+ + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFHNAFGCTPFPMVDTQVMAAFL----GHGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + + GI + E R D W RPL++ + AA DV +L IY ++ K+
Sbjct: 122 VNE--FLGIEVDKSES-----RTD---WLARPLSQKQLDYAAADVFYLLPIYEKLLDKVT 171
Query: 218 QQSLWYLA 225
Q W A
Sbjct: 172 QAGWWQAA 179
>gi|183231928|ref|XP_650756.2| exosome component 10 [Entamoeba histolytica HM-1:IMSS]
gi|169802269|gb|EAL45368.2| exosome component 10, putative [Entamoeba histolytica HM-1:IMSS]
gi|449704625|gb|EMD44835.1| exosome complex exonuclease RRP6, putative [Entamoeba histolytica
KU27]
Length = 517
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
+G +C++Q++ + Y++D I +++ P + I KV H C D L + FG+
Sbjct: 222 YGFVCLLQISTRSSDYIIDTITLRDSITLLNDP-FTNPNIEKVFHGCDFDMIWLSYNFGL 280
Query: 124 KLHNVVDT-QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
+ N +D+ Q A +L + + S LL +YC + +K ++
Sbjct: 281 YVVNCIDSGQCARALKLQ----------HFSLKYLLQ--KYCNVDADKKYQLAD------ 322
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYI 208
W RPLT+ M+ A D +L YI
Sbjct: 323 --WRLRPLTKEMIEYARGDTHYLLYI 346
>gi|339717671|pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717672|pdb|3SAF|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717673|pdb|3SAG|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
gi|339717674|pdb|3SAG|B Chain B, Crystal Structure Of The Human Rrp6 Catalytic Domain With
D313n Mutation In The Active Site
Length = 428
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 20/148 (13%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G C+MQ++ +++D ++ + +L I KV H D E L FG+
Sbjct: 146 GLTCLMQISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLY 204
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A L+ GR S D + YC + ++ ++
Sbjct: 205 VVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCNVDSNKQYQLAD-------- 245
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNM 212
W RPL E M+ A DD +L YIY M
Sbjct: 246 WRIRPLPEEMLSYARDDTHYLLYIYDKM 273
>gi|157124837|ref|XP_001660547.1| hypothetical protein AaeL_AAEL010007 [Aedes aegypti]
gi|108873835|gb|EAT38060.1| AAEL010007-PA [Aedes aegypti]
Length = 949
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ 85
P+ I+ SQLP E + ++L I + + G C+MQ++ Y++D +
Sbjct: 269 TPLDIIDKESQLPGLLKELKAAKELAIDLEHHSYRTYQ-GFTCLMQISTRSKDYIIDTLA 327
Query: 86 GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
E + + + KV+H D E L + + N+ DT A ++E
Sbjct: 328 LREEL-HILNEVFTNPKVVKVLHGAISDIEWLQRDLSLYIVNMFDTGEAAKVLE------ 380
Query: 146 RSPDDYISFVGL-LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
S +GL YC I + ++ W RP+ + A D +
Sbjct: 381 ------FSRIGLQFLLKHYCNIDTDKAYQL--------ADWRIRPIPHNFIEYARKDTHY 426
Query: 205 LPYIYHNMMKKL 216
L YIY M +L
Sbjct: 427 LLYIYDRMRNEL 438
>gi|387824213|ref|YP_005823684.1| Ribonuclease D [Francisella cf. novicida 3523]
gi|328675812|gb|AEB28487.1| Ribonuclease D [Francisella cf. novicida 3523]
Length = 364
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A + I+L+D ++ + K E+ I K+IH D + F +++
Sbjct: 38 LCLVQIATENEIFLIDTLKDLD--FSKLKDIFENKDIQKIIHSATNDIPIIKRFFNCEVN 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
N+ DTQ+A +F+G + KE + + + ++ QF
Sbjct: 96 NIFDTQLA-----------------AAFLGFQTQSSLKTLL---KEILDIEMEKESQFSD 135
Query: 185 WTYRPLTELMVRAAADDVRFL 205
W RPLT+ + A DV +L
Sbjct: 136 WRNRPLTQKQLNYAIKDVEYL 156
>gi|262194484|ref|YP_003265693.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
gi|262077831|gb|ACY13800.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
Length = 925
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 26/168 (15%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPA---LESSYITKVIH 108
+G D E R +LC++QLA P+ ++DA V P L S + K+IH
Sbjct: 778 VGLDVETTLFDR--ALCLVQLAAPEYTVVIDA-----RAVDDLGPVSELLASRAVVKIIH 830
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
+ + + +++ + G+ + NV DT + GRKR + V R G
Sbjct: 831 NAQFE-RSVFRKLGMDIENVFDT---LKVSRRLRGRKREGGHGLGAVC----ARELGREL 882
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ E+ R D WT RPLT+ + AA D L ++ ++L
Sbjct: 883 DKHEQ-----RSD---WTLRPLTQRQLDYAALDAEVLLVLHERFTREL 922
>gi|336124579|ref|YP_004566627.1| ribonuclease D [Vibrio anguillarum 775]
gi|335342302|gb|AEH33585.1| Ribonuclease D [Vibrio anguillarum 775]
Length = 372
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E + FG +VDTQ+ + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFHNAFGCTPFPMVDTQVMAAFL----GHGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + + GI + E R D W RPL++ + AA DV +L IY ++ K+
Sbjct: 122 VNE--FLGIEIDKSES-----RTD---WLARPLSQKQLDYAAADVFYLLPIYEKLLDKVT 171
Query: 218 QQSLWYLA 225
Q W A
Sbjct: 172 QAGWWQAA 179
>gi|302838749|ref|XP_002950932.1| hypothetical protein VOLCADRAFT_91413 [Volvox carteri f.
nagariensis]
gi|300263627|gb|EFJ47826.1| hypothetical protein VOLCADRAFT_91413 [Volvox carteri f.
nagariensis]
Length = 254
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 77 AIYLVD-AIQGGETV--------VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHN 127
+I+LVD A GG V + K LE + K ++D +RD+EAL ++G++L
Sbjct: 55 SIWLVDVAALGGRAFQHRSGLDGVTSLKRLLEDPVVIKYLYDVRRDAEALSSEYGVRLRG 114
Query: 128 VVDTQIAYSLIEEQEGRKRS 147
VVD Q+A + + EG R+
Sbjct: 115 VVDLQLADVAVRQAEGGLRA 134
>gi|189236369|ref|XP_001811750.1| PREDICTED: similar to exonuclease 3-5 domain-like 1 [Tribolium
castaneum]
gi|270005886|gb|EFA02334.1| hypothetical protein TcasGA2_TC008002 [Tribolium castaneum]
Length = 313
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 63 RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFG 122
R+ + ++ +A +++ D + G+ +K + LES YI KV+HD + LY ++G
Sbjct: 140 RNKPMSVLVMADFKQVFIFDMLCLGK--LKTLREVLESGYICKVVHDGGALFDCLYHKYG 197
Query: 123 IKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
+++ N+ DTQ S++ ++ +D + +++ ++ VL +
Sbjct: 198 VEMKNIFDTQAVDSMLSKE-------NDDVEIKRNISECLTYHFNFPAALLSAVLETMND 250
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ W RPLT+ +A V +L + +MK++
Sbjct: 251 KTWFIRPLTKSDKIKSAQLVAYLLSLRDQLMKQI 284
>gi|423712809|ref|ZP_17687107.1| ribonuclease D [Bartonella washoensis Sb944nv]
gi|395410505|gb|EJF77059.1| ribonuclease D [Bartonella washoensis Sb944nv]
Length = 384
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + +K + I KV H ++D E +Y GI +
Sbjct: 40 LCLIQLASPDTTMLIDPI-APDIDLKPFFDLMADKKIVKVFHAARQDIETIYHLGGIVPY 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQIA S+ D IS+ ++ + C + +K +F
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIV---QRCTGHHIDKSS---------RFTD 138
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
W+ RPL+E + A DV +L IY + K+L N+++ W
Sbjct: 139 WSCRPLSEKQLLYALADVTYLRDIYLLLKKQLEKNKRTHW 178
>gi|444728183|gb|ELW68647.1| Serine/threonine-protein kinase mTOR [Tupaia chinensis]
Length = 3780
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 34/169 (20%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSY----ITKVI 107
VDL H G C+MQ++ +++D ++ +++ L S+ I KV
Sbjct: 3000 AVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLE-----LRSDMYILNESFTDPAIVKVF 3054
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
H D E L FG+ + N+ DT A L+ GR S D + YC +
Sbjct: 3055 HGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCSVE 3103
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ ++ W RPL E M+ A DD +L YIY M +L
Sbjct: 3104 SNKQYQL--------ADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 3144
>gi|406597337|ref|YP_006748467.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
gi|407684351|ref|YP_006799525.1| ribonuclease D [Alteromonas macleodii str. 'English Channel 673']
gi|407688279|ref|YP_006803452.1| ribonuclease D [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|406374658|gb|AFS37913.1| ribonuclease D [Alteromonas macleodii ATCC 27126]
gi|407245962|gb|AFT75148.1| ribonuclease D [Alteromonas macleodii str. 'English Channel 673']
gi|407291659|gb|AFT95971.1| ribonuclease D [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 385
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 29 HIVTNASQLPAEFLEPSSERQLVIGFDCEGV---DLCRHGSLCIMQLAFPDAIYLVD--A 83
++T + QL E + +++RQ + D E V L H L ++QL + L+D A
Sbjct: 4 QLITTSEQL--EKVCTAAQRQEAVALDTEFVRTKTLTPH--LGLIQLYDGHQLVLIDPLA 59
Query: 84 IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEG 143
I + + +E++ + KV+H C D EA F V DTQ+A S+++
Sbjct: 60 IDNMQPFIDL----MENTEVVKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILD---- 111
Query: 144 RKRSPD-DYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDV 202
P Y V LL C IS + E R D W RPL E + AA+DV
Sbjct: 112 --MGPSLGYAKLVELL-----CDISLDKGES-----RTD---WLARPLREAQLSYAANDV 156
Query: 203 RFLPYIYHNMMKKLNQ 218
+L Y + K+ +
Sbjct: 157 LYLLPCYQQLASKVQE 172
>gi|408825052|ref|ZP_11209942.1| ribonuclease D [Pseudomonas geniculata N1]
Length = 359
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 21/181 (11%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE +R IG D E + + L ++Q+A I L+D + G T +A P
Sbjct: 8 PAELDAYFQQRPTRIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMT--EALAP 65
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
L ITKV+H D A + G+ + DTQI +L +S+
Sbjct: 66 WLADESITKVMHSASEDLVAFKWACGVLPRPLFDTQIGAALAGIGG--------GMSYQK 117
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
L+A+ G++ + E R D W RPL+E ++ AADDV L ++ + KL
Sbjct: 118 LVAE--ITGVALAKGE-----TRSD---WMRRPLSESQLQYAADDVEHLFALHDAIDAKL 167
Query: 217 N 217
Sbjct: 168 Q 168
>gi|294943277|ref|XP_002783816.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
gi|239896568|gb|EER15612.1| Ribonuclease D, putative [Perkinsus marinus ATCC 50983]
Length = 350
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 64/154 (41%), Gaps = 19/154 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESS-YITKVIHDCKRDSEALYFQFG 122
G C++Q+A Y+VD + G + + S I KV+H D + L
Sbjct: 5 RGFTCLIQIATRKKDYIVDVLAPGIMMKMHDFNRITSDPGIVKVLHGADMDVQWLQRDLS 64
Query: 123 IKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
L N+ DT A ++E G S + + F YCG + ++
Sbjct: 65 AYLCNMFDTGQAARVLELGGGY--SLKNLLDF--------YCGYKADKANQL-------- 106
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL+E M + A DDV +L YIY M +L
Sbjct: 107 ADWRQRPLSERMKQYARDDVHYLLYIYDRMRAQL 140
>gi|407700585|ref|YP_006825372.1| ribonuclease D [Alteromonas macleodii str. 'Black Sea 11']
gi|407249732|gb|AFT78917.1| ribonuclease D [Alteromonas macleodii str. 'Black Sea 11']
Length = 385
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 33/196 (16%)
Query: 29 HIVTNASQLPAEFLEPSSERQLVIGFDCEGV---DLCRHGSLCIMQLAFPDAIYLVD--A 83
++T + QL E + +++RQ + D E V L H L ++QL + L+D A
Sbjct: 4 QLITTSEQL--EKVCTAAQRQEAVALDTEFVRTKTLTPH--LGLIQLYDGHQLVLIDPLA 59
Query: 84 IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEG 143
I + + +E++ + KV+H C D EA F V DTQ+A S+++
Sbjct: 60 IDNMQPFIDL----MENTEVVKVLHSCSEDIEAFLTAFDTVPTPVFDTQLAGSILD---- 111
Query: 144 RKRSPD-DYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDV 202
P Y V LL C IS + E R D W RPL E + AA+DV
Sbjct: 112 --MGPSLGYAKLVELL-----CDISLDKGES-----RTD---WLARPLREAQLSYAANDV 156
Query: 203 RFLPYIYHNMMKKLNQ 218
+L Y + K+ +
Sbjct: 157 LYLLPCYQQLASKVQE 172
>gi|440797552|gb|ELR18636.1| 3'5' exonuclease domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 929
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 32/200 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ ++VD + E + + + I KV H
Sbjct: 281 AVDLEHHSYRTFQGFTCLMQISTRTEDFIVDTLALREHM-HLLSSSFHDANIVKVFHGSD 339
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L FG+ + N+ DT A ++E Y SF +CG+ +K
Sbjct: 340 SDIMWLQRDFGLYVINMFDTGQACRVLE-----------YPSFSLAYLLRHHCGVLADKK 388
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL----NQQSLWYLAVR 227
++ W RPL E M++ A +D +L +IY + +L N + LAV
Sbjct: 389 YQLAD--------WRIRPLPEEMLKYAREDTHYLLFIYDKLRNELIGRANMSNNLILAVL 440
Query: 228 GALYCRCFCINENDYVDWPP 247
R C+ + + W P
Sbjct: 441 N--RSRELCLLQYEKPLWTP 458
>gi|399527748|ref|ZP_10767435.1| 3'-5' exonuclease [Actinomyces sp. ICM39]
gi|398361684|gb|EJN45426.1| 3'-5' exonuclease [Actinomyces sp. ICM39]
Length = 414
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 97/240 (40%), Gaps = 53/240 (22%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPD-AIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E R+GS ++Q+ D +L+D + V +P +E ++ +HD
Sbjct: 51 IALDVERAQGFRYGSDPYLVQIRREDVGTFLIDTHALPDLSV--LQPGVEDVWL---LHD 105
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C +D L Q G++ ++ DT+IA LI + + + + +GL+ D +Q
Sbjct: 106 CLQDLPNLR-QVGLRPSSLFDTEIAARLIGLERFGLAAVAEQVLGLGLVKD-------HQ 157
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
+ W+ RPL + +R AA DV L +Y+ + K+L+Q W A +
Sbjct: 158 ASD------------WSVRPLPKEWLRYAALDVELLTELYYRLSKRLDQMGRWEWAQQEF 205
Query: 230 LYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMGRIIGRRGSSIL 289
Y PP P + V G G+I RRG ++L
Sbjct: 206 AYALSVT---------PPGPKADRWRSVPG-----------------AGKIRSRRGLAVL 239
>gi|262193925|ref|YP_003265134.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
gi|262077272|gb|ACY13241.1| 3'-5' exonuclease [Haliangium ochraceum DSM 14365]
Length = 925
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 26/168 (15%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPA---LESSYITKVIH 108
+G D E R +LC++QLA P+ ++DA V P L S + K+IH
Sbjct: 778 VGLDVETTLFDR--ALCLVQLAAPEYTVVIDA-----RAVDDLGPVSELLASRAVVKIIH 830
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
+ + + +++ + G+ + NV DT + GRKR + V R G
Sbjct: 831 NAQFE-RSVFRKLGMDIENVFDT---LKVSRRLRGRKREGGHGLGAVC----ARELGREL 882
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ E+ R D WT RPLT+ + AA D L ++ ++L
Sbjct: 883 DKHEQ-----RSD---WTQRPLTQRQLDYAALDAEVLLALHERFTREL 922
>gi|421099052|ref|ZP_15559712.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
gi|410797786|gb|EKR99885.1| 3'-5' exonuclease [Leptospira borgpetersenii str. 200901122]
Length = 388
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ + E I K+ H
Sbjct: 29 ISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LDGLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG K N+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFKFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNLYEEAL 183
>gi|398332245|ref|ZP_10516950.1| ribonuclease III [Leptospira alexanderi serovar Manhao 3 str. L 60]
gi|456860990|gb|EMF79700.1| 3'-5' exonuclease [Leptospira weilii serovar Topaz str. LT2116]
Length = 388
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ + E I K+ H
Sbjct: 29 ISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LDGLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG K N+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFKFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNLYEEAL 183
>gi|359729247|ref|ZP_09267943.1| ribonuclease D [Leptospira weilii str. 2006001855]
gi|417777730|ref|ZP_12425544.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
gi|410782027|gb|EKR66592.1| 3'-5' exonuclease [Leptospira weilii str. 2006001853]
Length = 388
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ + E I K+ H
Sbjct: 29 ISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LDGLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG K N+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFKFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNLYEEAL 183
>gi|261331708|emb|CBH14702.1| zinc finger protein, predicted [Trypanosoma brucei gambiense
DAL972]
Length = 390
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 88 ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ--EGRK 145
+ VK + L I K+ DC+RD EAL Q G+K V+D Q+ ++ I+ + +
Sbjct: 120 DVFVKDMQSLLSDREIRKLFFDCRRDVEALSCQLGVKPEGVLDLQVFFTAIQWKLRSVNR 179
Query: 146 RSPDDYISFVGLLADPRYCGISYQEKE---EVRVLLRQDPQFWTYRPLTELMVRAAADDV 202
RS Y+ G++ QE + + + L P W RPL + + AA DV
Sbjct: 180 RSGMGYVL-------KSVAGLTRQEGDSAVQTAMTLGNRP-VWDIRPLPDHFLEYAAGDV 231
Query: 203 RFL 205
R +
Sbjct: 232 RHI 234
>gi|154344909|ref|XP_001568396.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065733|emb|CAM43507.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 412
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 9/145 (6%)
Query: 78 IYLVDAIQ-GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYS 136
++L D + +A +P I K+ DC+RD EAL Q + V+D Q+ ++
Sbjct: 139 VFLFDVLSLSVHIFTQAIRPVFNDETIRKLFFDCRRDIEALSTQMSLVPKRVLDLQLLFT 198
Query: 137 LIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV--RVLLRQDPQFWTYRPLTELM 194
+ + + RS + +L GI QE + ++ D W RPL E
Sbjct: 199 AV---QWKLRSVNRRSGMTYVLKS--VAGIHRQEGDFAVQTAMVVGDRPVWDTRPLPEHF 253
Query: 195 VRAAADDVRFLPYIYHNMMKKLNQQ 219
+ AADDVR + ++ L QQ
Sbjct: 254 LEYAADDVRHI-HLLSTYFPSLTQQ 277
>gi|71745756|ref|XP_827508.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831673|gb|EAN77178.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 390
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 88 ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ--EGRK 145
+ VK + L I K+ DC+RD EAL Q G+K V+D Q+ ++ I+ + +
Sbjct: 120 DVFVKDMQSLLSDREIRKLFFDCRRDVEALSCQLGVKPEGVLDLQVFFTAIQWKLRSVNR 179
Query: 146 RSPDDYISFVGLLADPRYCGISYQEKE---EVRVLLRQDPQFWTYRPLTELMVRAAADDV 202
RS Y+ G++ QE + + + L P W RPL + + AA DV
Sbjct: 180 RSGMGYVL-------KSVAGLTRQEGDSAVQTAMTLGNRP-VWDIRPLPDHFLEYAAGDV 231
Query: 203 RFL 205
R +
Sbjct: 232 RHI 234
>gi|148266297|ref|YP_001233003.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
gi|146399797|gb|ABQ28430.1| 3'-5' exonuclease [Geobacter uraniireducens Rf4]
Length = 409
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 24/173 (13%)
Query: 49 QLVIGFDCEGVDLCRHG-SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVI 107
+ + FD E L + +C++Q++ L+D + + P L + + KV
Sbjct: 55 ETTLAFDLEADSLHHYTEKVCLIQVSTNSETALIDPL--APLDLSPLAPILANPAVRKVF 112
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD-PRYCGI 166
H D +LY FG ++ N+ DT IA + E+E VGL A + G+
Sbjct: 113 HGADYDMRSLYRDFGFEVRNLFDTMIASQFLGEKE------------VGLAAALKKRFGV 160
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
+K + + D W+ RP + M+ A D L +Y + +L +
Sbjct: 161 ELDKKYQ-----KAD---WSKRPFSPQMIEYAMKDTSLLIKLYLQLEDELRAK 205
>gi|226228424|ref|YP_002762530.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
gi|226091615|dbj|BAH40060.1| putative ribonuclease [Gemmatimonas aurantiaca T-27]
Length = 388
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 32/211 (15%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D EG R + ++QL+ D ++D + G LE + V+HD
Sbjct: 27 AIALDTEGASFHRFVDRIYLLQLSTADHEAVIDPLPIGTPTRLGV--LLEDPQVEVVLHD 84
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD-PRYCGISY 168
D L +G ++ ++ DT++A L+ I GL A ++ GI
Sbjct: 85 ADYDLRLLRQDYGWRVTHLFDTRVAAQLLG------------IRAFGLAALLEQFFGIKL 132
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRG 228
+K + R D W+ RPLT M+ AA D R L + + +L Q+ W A
Sbjct: 133 DKKHQ-----RAD---WSMRPLTADMLDYAAHDTRHLLGLRDRLHDELVQKGRWSWA--- 181
Query: 229 ALYCRCFCINENDYVDWPPLPPVPDYLIVEG 259
F E W P P +L ++G
Sbjct: 182 ---QEEFTRAEG--TRWEPEAPDTSFLRLKG 207
>gi|209524209|ref|ZP_03272759.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
gi|376003571|ref|ZP_09781380.1| ribonuclease D [Arthrospira sp. PCC 8005]
gi|423066711|ref|ZP_17055501.1| 3'-5' exonuclease [Arthrospira platensis C1]
gi|209495300|gb|EDZ95605.1| 3'-5' exonuclease [Arthrospira maxima CS-328]
gi|375328045|emb|CCE17133.1| ribonuclease D [Arthrospira sp. PCC 8005]
gi|406711736|gb|EKD06935.1| 3'-5' exonuclease [Arthrospira platensis C1]
Length = 207
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 16/160 (10%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+ P + I+ G+ K LE++ I KV H + D L GI+++
Sbjct: 41 LCLVQICDPKGQVVAIRIERGQREAPNLKTLLETANILKVFHFARFDVATLRHNLGIEVN 100
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
V T+IA L G+ D + G+ D Q +
Sbjct: 101 PVFCTKIASKLARTYTGKHGLKDLIMELEGVELDKS----------------SQSSDWGN 144
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
L+E + AA+DVR+L +++ L ++ W LA+
Sbjct: 145 AANLSENQLNYAANDVRYLLSAKDKLIQMLKREERWDLAL 184
>gi|226487924|emb|CAX75627.1| Exosome component 10 [Schistosoma japonicum]
Length = 860
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 28/187 (14%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C++Q++ D Y++DA+ + + I KV H
Sbjct: 281 AVDLEHHSYRSFLGITCLIQISTLDTDYIIDALALHDHL-SILNEVFTDPKIVKVFHGSD 339
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L FG+ + N+ DT +A L+ Q GR S LL RY I+ +K
Sbjct: 340 SDLMWLQRDFGVYVVNLFDTGVAARLL--QHGR-------FSLSYLLQ--RYVNINPNKK 388
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA-- 229
++ W RPL ++ A D +L +I M ++L ++L + A
Sbjct: 389 YQLAD--------WRIRPLPNELIEYARTDTHYLLHIASRMCRELQDRNLLSVTFERARQ 440
Query: 230 LYCRCFC 236
L +C+
Sbjct: 441 LCLKCYT 447
>gi|417405124|gb|JAA49287.1| Putative exosome 3'-5' exoribonuclease complex subunit pm/scl-100
rrp6 [Desmodus rotundus]
Length = 888
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + +L I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRTEDFVIDTLELRSDMY-ILNESLTHPAIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A L+ GR S D + YC + ++
Sbjct: 370 SDVEWLQKDFGLYVVNMFDTHQAACLL--NLGR-HSLDHLLKL--------YCDVESNKQ 418
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M+ A DD +L YIY M +L
Sbjct: 419 YQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 455
>gi|424033629|ref|ZP_17773042.1| ribonuclease D [Vibrio cholerae HENC-01]
gi|408874288|gb|EKM13462.1| ribonuclease D [Vibrio cholerae HENC-01]
Length = 372
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + + L ++QL + L+D + T + + L+ + + KV+H
Sbjct: 24 VVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTEL--TDMTSFVELLKDTSVLKVLHA 81
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E FG +VDTQ+ + + G S F L+ + Y G+
Sbjct: 82 CGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATLVEE--YLGVELD 131
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
+ E R D W RPLT+ + AA DV +L +Y ++ K+N+ W
Sbjct: 132 KSES-----RTD---WMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWW 176
>gi|302765286|ref|XP_002966064.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
gi|300166878|gb|EFJ33484.1| hypothetical protein SELMODRAFT_84661 [Selaginella moellendorffii]
Length = 512
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G +C+MQ++ ++VD + + + + I KVIH
Sbjct: 247 AVDLENHHYRSFQGFVCLMQVSTRSQDFIVDTLVLRSHIGPVLRSVFANPSIRKVIHGSD 306
Query: 112 RDSEALYFQFGIKLHNVVDT-QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
RD L FGI + N+ DT Q A L E+ G ++F+ +C ++ +
Sbjct: 307 RDILWLQRDFGIYVCNLFDTGQAARVLRMERFG--------LAFLL----QTFCEVTPDK 354
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
+ ++ W RPL+ M++ A +D +L Y+Y M
Sbjct: 355 RYQL--------ADWRLRPLSAEMLKYAREDTHYLLYVYDKM 388
>gi|269960729|ref|ZP_06175101.1| ribonuclease D [Vibrio harveyi 1DA3]
gi|424036272|ref|ZP_17775343.1| ribonuclease D [Vibrio cholerae HENC-02]
gi|424047109|ref|ZP_17784670.1| ribonuclease D [Vibrio cholerae HENC-03]
gi|269834806|gb|EEZ88893.1| ribonuclease D [Vibrio harveyi 1DA3]
gi|408884407|gb|EKM23151.1| ribonuclease D [Vibrio cholerae HENC-03]
gi|408896827|gb|EKM32789.1| ribonuclease D [Vibrio cholerae HENC-02]
Length = 372
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + + L ++QL + L+D + T + + L+ + + KV+H
Sbjct: 24 VVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTEL--TDMTSFVELLKDTSVLKVLHA 81
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E FG +VDTQ+ + + G S F L+ + Y G+
Sbjct: 82 CGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATLVEE--YLGVELD 131
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
+ E R D W RPLT+ + AA DV +L +Y ++ K+N+ W
Sbjct: 132 KSES-----RTD---WMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWW 176
>gi|335043651|ref|ZP_08536678.1| ribonuclease D [Methylophaga aminisulfidivorans MP]
gi|333790265|gb|EGL56147.1| ribonuclease D [Methylophaga aminisulfidivorans MP]
Length = 381
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A D I VD + + + S IT V H ++D E +
Sbjct: 41 LCLIQVASNDVIACVDPLAISD--LSPLMALFYSENITIVFHAARQDLELFFLMKNALPP 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
V DTQ+A +++ D I + L+ + C +K + R RQ
Sbjct: 99 KVFDTQLAATVL--------GYGDQIGYGNLV---KQCLGVELDKGQARTDWRQ------ 141
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
RPL+E V AADDVR+L +Y ++ +LN+
Sbjct: 142 -RPLSEAQVDYAADDVRYLRQLYLQLVDELNR 172
>gi|156973677|ref|YP_001444584.1| ribonuclease D [Vibrio harveyi ATCC BAA-1116]
gi|156525271|gb|ABU70357.1| hypothetical protein VIBHAR_01380 [Vibrio harveyi ATCC BAA-1116]
Length = 382
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + + L ++QL + L+D + T + + L+ + + KV+H
Sbjct: 34 VVMLDTEFVRIRTYYPQLGLIQLFDGKQLSLIDPTE--LTDMTSFVELLKDTSVLKVLHA 91
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E FG +VDTQ+ + + G S F L+ + Y G+
Sbjct: 92 CGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATLVEE--YLGVELD 141
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
+ E R D W RPLT+ + AA DV +L +Y ++ K+N+ W
Sbjct: 142 KSES-----RTD---WMARPLTQKQLDYAAADVHYLMPLYEKLLDKVNEAGWW 186
>gi|357417303|ref|YP_004930323.1| ribonuclease D [Pseudoxanthomonas spadix BD-a59]
gi|355334881|gb|AER56282.1| ribonuclease D [Pseudoxanthomonas spadix BD-a59]
Length = 375
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 21/167 (12%)
Query: 52 IGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+G D E + + L ++Q+A D I LVD + G + +A P L + + KV+H
Sbjct: 37 VGMDTEFIREKTFWPQLALVQIAIGDRILLVDPLVPG--INQALAPLLSNPDVVKVMHSA 94
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D AL + G + + DTQIA +L + + L+A+ G+ +
Sbjct: 95 SEDLVALGWACGTQPSPLFDTQIAAALAGVGG--------GLGYQKLVAE--ITGVPLAK 144
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
E R D W RPL+ + AADDV L IY + +L+
Sbjct: 145 GET-----RSD---WLRRPLSAAQLEYAADDVTHLGAIYQALSARLD 183
>gi|291571594|dbj|BAI93866.1| ribonuclease D [Arthrospira platensis NIES-39]
Length = 207
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 22/189 (11%)
Query: 39 AEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPA 97
+EF+E + + D E + L LC++Q+ P + I+ G+ K
Sbjct: 17 SEFMEAEA-----LAIDTETMGLLPWRDRLCLVQICDPKGQVVAIRIERGQREAPNLKTL 71
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE++ I KV H + D L GI+++ V T+IA L G+ D + G+
Sbjct: 72 LETTNILKVFHFARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHGLKDLIMELEGV 131
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
D Q + L+E + AA+DVR+L + + L
Sbjct: 132 ELDKS----------------SQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLK 175
Query: 218 QQSLWYLAV 226
++ W LA+
Sbjct: 176 REERWDLAL 184
>gi|356565747|ref|XP_003551099.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 889
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 23/155 (14%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + KV+H RD L FGI
Sbjct: 291 QGLTCLMQISTRTEDFIVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIAWLQRDFGI 350
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQD 181
+ N+ DT A L+ +R+ ++I F + A+ Y
Sbjct: 351 YICNLFDTHQASKLL----NLERNSLEHILHHFCEVTANKEYQNAD-------------- 392
Query: 182 PQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL + M+R A +D +L YIY M KL
Sbjct: 393 ---WRLRPLPDEMIRYAREDTHYLLYIYDLMRIKL 424
>gi|388599678|ref|ZP_10158074.1| ribonuclease D [Vibrio campbellii DS40M4]
Length = 372
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 24/152 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 70 LKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G+ + E R D W RPLT+ + AA DV +L +Y ++ K+N
Sbjct: 122 VEE--YLGVELDKSES-----RTD---WMARPLTQKQLDYAAADVHYLMPLYEKLLDKVN 171
Query: 218 QQSLWYLAVRGA----LYCRCFCIN-ENDYVD 244
+ W+ AV+ + R +N EN Y+D
Sbjct: 172 EAG-WWEAVQQESDLLVSKRIRNVNEENAYLD 202
>gi|407794360|ref|ZP_11141387.1| ribonuclease D [Idiomarina xiamenensis 10-D-4]
gi|407212960|gb|EKE82821.1| ribonuclease D [Idiomarina xiamenensis 10-D-4]
Length = 387
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 23/195 (11%)
Query: 23 DSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLV 81
+ V ++T +QL EF + E Q + D E V + L ++Q L+
Sbjct: 9 NQVTAYQVITAQAQL-LEFCQQVRE-QGWVAIDSEFVRTRTYYAKLGLLQANCGHGAVLI 66
Query: 82 DAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ 141
D + G + +K + + I KV+H D + + Q G++ +++D+QIA + +
Sbjct: 67 DPLVGLD--LKPFWRLVGDADIVKVMHAAGEDIQLFWQQGGVQPQHLLDSQIAAAFL--- 121
Query: 142 EGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADD 201
D + + L+ RY IS + + R D W RPL+E + AADD
Sbjct: 122 -----GWGDSLGYAALV--ERYYDISLDKSQS-----RTD---WLARPLSEAQLAYAADD 166
Query: 202 VRFLPYIYHNMMKKL 216
V +L Y ++ ++L
Sbjct: 167 VIYLARFYADLRERL 181
>gi|409991198|ref|ZP_11274482.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca]
gi|409937948|gb|EKN79328.1| 3'-5' exonuclease [Arthrospira platensis str. Paraca]
Length = 209
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 76/189 (40%), Gaps = 22/189 (11%)
Query: 39 AEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPA 97
+EF+E + + D E + L LC++Q+ P + I+ G+ K
Sbjct: 19 SEFMEAEA-----LAIDTETMGLLPWRDRLCLVQICDPKGQVVAIRIERGQREAPNLKTL 73
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE++ I KV H + D L GI+++ V T+IA L G+ D + G+
Sbjct: 74 LETTNILKVFHFARFDVATLRHNLGIEVNPVFCTKIASKLARTYTGKHGLKDLIMELEGV 133
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
D Q + L+E + AA+DVR+L + + L
Sbjct: 134 ELDKS----------------SQSSDWGNAANLSENQLNYAANDVRYLLSAKDKLNQMLK 177
Query: 218 QQSLWYLAV 226
++ W LA+
Sbjct: 178 REERWDLAL 186
>gi|350587033|ref|XP_001925126.4| PREDICTED: exonuclease 3'-5' domain-containing protein 2 [Sus
scrofa]
Length = 624
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 5 PSHQTHIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVD 60
P+ + P SS P + ++ +VT + + + +EP R+L V+G DCE V+
Sbjct: 57 PAPEEDQPHSSAPRASWEERILKAKVVTVSQEEEWDQIEPLLRRELKDFPVLGIDCEWVN 116
Query: 61 LCRHGS-LCIMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSE 115
L S L ++Q+A P + L I GG+T+ K L I KV C D+
Sbjct: 117 LEGKASPLSLLQMASPSGFCVLVRLPKLISGGKTLPKTLLDILADGTILKVGVGCSEDAS 176
Query: 116 ALYFQFGIKLHNVVD 130
L +G+ + +D
Sbjct: 177 KLLQDYGLVVKGCLD 191
>gi|3831454|gb|AAC69936.1| hypothetical protein [Arabidopsis thaliana]
Length = 237
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G ++Q++ + +LVD I V+ +P I KV H D L F I
Sbjct: 91 GFTALIQISTHEEDFLVDTI-ALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIY 149
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A ++ + P ++++ CG++ ++L R+D
Sbjct: 150 VVNMFDTAKACEVLSK-------PQRSLAYLL----ETVCGVATN-----KLLQRED--- 190
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL+E MVR A D +L YI ++ +L Q
Sbjct: 191 WRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQ 224
>gi|395841111|ref|XP_003793392.1| PREDICTED: exosome component 10 [Otolemur garnettii]
Length = 881
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 54 FDCE--GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+C+ VDL H G C+MQ++ +++D ++ + + I K
Sbjct: 300 LNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFVIDTLELRSDLY-ILNESFTDPAIVK 358
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H D E L FG+ + N+ DT A L+ GR S D + YC
Sbjct: 359 VFHGADSDIEWLQKDFGLYVVNMFDTHQAARLL--NLGR-HSLDHLLKL--------YCN 407
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ ++ ++ W RPL E M+ A DD +L YIY M +L
Sbjct: 408 VESNKQYQLAD--------WRIRPLPEEMLSYARDDTHYLLYIYDKMRLEL 450
>gi|428169598|gb|EKX38530.1| hypothetical protein GUITHDRAFT_59898, partial [Guillardia theta
CCMP2712]
Length = 153
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 34/165 (20%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ + ++VD I+ + + PA ITKV H
Sbjct: 12 AVDLEHHSLRSFQGFTCLMQISTREQDFIVDTIEL-RSCIHLLLPAFTDPKITKVFHGAD 70
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L FG+ + N+ DT A ++E + S+ R+C +
Sbjct: 71 SDVRWLQRDFGLYIVNMFDTGQASRVLE-----------FPSYGLAYLLHRFC------E 113
Query: 172 EEVRVLLRQDPQF----WTYRPLTELMVRAAADDVRFLPYIYHNM 212
EE D Q+ W RPLT M++ A D +L YIY +
Sbjct: 114 EEA------DKQYQLADWRVRPLTPEMLKYARMDTHYLLYIYDQL 152
>gi|67848464|gb|AAY82265.1| hypothetical protein At2g32420 [Arabidopsis thaliana]
Length = 327
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G ++Q++ + +LVD I V+ +P I KV H D L F I
Sbjct: 155 GFTALIQISTHEEDFLVDTI-ALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIY 213
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A ++ + + S LL CG++ ++L R+D
Sbjct: 214 VVNMFDTAKACEVLSKPQR---------SLAYLL--ETVCGVATN-----KLLQRED--- 254
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL+E MVR A D +L YI ++ +L Q
Sbjct: 255 WRQRPLSEEMVRYARXDAHYLLYIADSLTTELKQ 288
>gi|357471299|ref|XP_003605934.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
gi|355506989|gb|AES88131.1| Exosome complex exonuclease RRP6 [Medicago truncatula]
Length = 974
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 21/167 (12%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
GVD +H G ++Q++ YL+D I +++ + +P I KV H
Sbjct: 176 GVDTEQHSLRSFLGFTGLVQISTQQEDYLIDTIALHDSM-EILRPVFADPSICKVFHGAD 234
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L F I + N+ DT A ++ + + S LL YCG++ +
Sbjct: 235 NDVLWLQRDFHIYVVNLFDTSKACEVLSKPQK---------SLAYLL--ETYCGVNTNKL 283
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
+V R+D W RPL+ MV A D +L YI + ++ +L Q
Sbjct: 284 LQVWPNYRED---WRQRPLSAEMVHYARTDAHYLLYIANCLIDELKQ 327
>gi|319408646|emb|CBI82301.1| Ribonuclease D [Bartonella schoenbuchensis R1]
Length = 383
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 25/160 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA P+ L+D + + +++ + I KV H ++D E +Y GI +
Sbjct: 39 LCLIQLASPNVTMLIDPM-VPDIDLQSFFDLMVDEKIVKVFHAARQDIETIYHLGGIIPY 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQIA S+ D IS+ ++ + C + L + +F
Sbjct: 98 PLFDTQIAGSIC--------GFGDSISYDQIV---QRCTGHH---------LDKSSRFTD 137
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
W++RPL+E + A DV +L +Y ++ KKL N+++ W
Sbjct: 138 WSHRPLSEKQLLYALADVTYLRDVYLSLKKKLEKNKRTHW 177
>gi|322700217|gb|EFY91973.1| exosome complex exonuclease Rrp [Metarhizium acridum CQMa 102]
Length = 831
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 30/171 (17%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G +C+MQ++ D ++VD +Q ++ + I KV H
Sbjct: 245 IAVDLEHHDFRTYTGLVCLMQVSTRDQDWIVDTLQPWRHKLEVLNDVFANPSIVKVFHGA 304
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYIS-----FVGLLADPRYCG 165
D L G+ ++ + DT A L+ P ++ FVG AD +Y
Sbjct: 305 YMDMVWLQRDLGLYVNGLFDTYFACDLL-------NYPGKSLAFLLSKFVGFDADKQYQL 357
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RP+ E M+ A D +L YI+ N+ +L
Sbjct: 358 AD-----------------WRIRPIPEEMLYYARSDTHYLLYIFDNVRNEL 391
>gi|254492081|ref|ZP_05105256.1| ribonuclease D [Methylophaga thiooxidans DMS010]
gi|224462633|gb|EEF78907.1| ribonuclease D [Methylophaga thiooxydans DMS010]
Length = 379
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 26/153 (16%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSY---ITKVIHDCKRDSEALYFQFGI 123
LC++Q+A D I VD ++ + P ++ Y +T V H ++D E L+
Sbjct: 41 LCLIQVANDDVIACVDPLK-----IDDLSPLMDVFYRTDMTLVFHAARQDLELLFLLRDA 95
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
V DTQ+A +++ D I + L+ + C +K R
Sbjct: 96 LPQQVFDTQLAATVL--------GYGDQIGYGNLV---KQCLNVDLDKAHART------- 137
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL+ + AADDVR+L +YH + KL
Sbjct: 138 DWRQRPLSPEQIDYAADDVRYLRELYHQLEAKL 170
>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa]
gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa]
Length = 855
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 28/157 (17%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ V + + KV+H RD L FGI
Sbjct: 267 QGLTCLMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIVWLQRDFGI 326
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ + R+ +Y+ +CG++ YQ E
Sbjct: 327 YICNLFDTGQASRVLKLE----RNSLEYLLH-------HFCGVTAKKEYQNAE------- 368
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL + M+R A +D +L +IY ++M+ L
Sbjct: 369 -----WRLRPLPDEMIRYAREDTHYLLHIY-DLMRAL 399
>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis]
gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis]
Length = 857
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 27/153 (17%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ +++D ++ V + + KV+H RD L FGI
Sbjct: 264 QGLTCLMQISTRTEDFIIDTLKLRIHVGPYLREVFKDPTKRKVMHGADRDIIWLQRDFGI 323
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ + S LL +CGI+ YQ +
Sbjct: 324 YVCNLFDTGQASRVLKLERN---------SLEHLLR--HFCGITANKEYQNAD------- 365
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
W RPLT+ M+R +D +L YIY M
Sbjct: 366 -----WRLRPLTDEMLRYGREDTHYLLYIYDLM 393
>gi|84684593|ref|ZP_01012494.1| exonuclease, putative [Maritimibacter alkaliphilus HTCC2654]
gi|84667572|gb|EAQ14041.1| exonuclease, putative [Maritimibacter alkaliphilus HTCC2654]
Length = 203
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 30/202 (14%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ DCE + L H LC++Q++ D + ++ G+T L + K+ H
Sbjct: 19 VVAIDCETMGLNPHRDRLCVVQMSGGDGHAHMVQVERGQTEAPNLTAMLTDPNVLKIFHF 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS-Y 168
+ D AL FG+ V T+IA LI R+ D LL + IS Y
Sbjct: 79 GRFDIAALLNAFGVVTAPVYCTKIASKLI-------RTYTDRHGLKTLLEEILRIDISKY 131
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRG 228
Q++ + W R LTE + AA DV +L + + +L ++ R
Sbjct: 132 QQQTD-----------WGARELTEAQLDYAASDVLYLHRLREKLDGRLAREG------RA 174
Query: 229 ALYCRCF----CINENDYVDWP 246
L CF + D WP
Sbjct: 175 ELAQACFDFLPARAQLDLAGWP 196
>gi|401428763|ref|XP_003878864.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495113|emb|CBZ30417.1| putative exosome subunit rrp6p homologue [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 743
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 23/166 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C+MQ++ + ++VD ++ + + A P + I KV H
Sbjct: 255 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL-RSSMGALAPVFLNPSILKVFHGA 313
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L F + + N DT +A + ++ + A +C + +
Sbjct: 314 REDIRWLQKDFSLYVVNFFDTGVALQTL------------HMPYSLAFAVDHFCQVKLNK 361
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
K + W RPL+ MV A D FL Y+ H+ +K L
Sbjct: 362 KYQT--------ADWRVRPLSAEMVHYARQDTHFLLYV-HDRLKAL 398
>gi|73667317|ref|YP_303333.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
gi|72394458|gb|AAZ68735.1| 3'-5' exonuclease [Ehrlichia canis str. Jake]
Length = 386
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 107/259 (41%), Gaps = 55/259 (21%)
Query: 22 IDSVVPI-HIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGS-----LCIMQLAFP 75
IDSV + H+ N L +F I D E + R+ S LC+MQ+A+
Sbjct: 3 IDSVKNLEHMCNNLLMLQPKF----------IAIDTEFI---RNSSEYYPRLCLMQVAYG 49
Query: 76 DAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAY 135
+++D + + + L + I KV HDC++D +AL +F + + DTQ+A
Sbjct: 50 REQFVIDVL-ASDMDLSPLNSILYNKNIVKVFHDCRQDIDALLTKFPKIPNPIFDTQVAA 108
Query: 136 SL---IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
E G R + ++ GIS + L W RPL+
Sbjct: 109 MFCYCYENAVGYSRLVEQFL------------GISLDK-------LSLKRSNWMLRPLSP 149
Query: 193 LMVRAAADDVRFLPYIYHNMMKKL--NQQSLWYLAVRGALYCRCFCINENDYVDWPPLPP 250
++ A +DV +L +Y + L + + LW+L + + +++ +
Sbjct: 150 DKIQYALNDVIYLHELYQILYDNLVDSGKLLWFLEEMDNIVLQ--------ELNYSNVCD 201
Query: 251 VPDYLIVEGDVPEEEILSI 269
+PD + D+ EEI+ +
Sbjct: 202 IPD---LSSDITREEIIVV 217
>gi|356515280|ref|XP_003526329.1| PREDICTED: uncharacterized protein LOC100791485 [Glycine max]
Length = 873
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G ++Q++ + YLVD I + +P + I KV H D L F I
Sbjct: 155 GFTALVQISTREKDYLVDTI-ALHDFMGILRPIFANPSICKVFHGADNDIVWLQRDFHIY 213
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A ++ + + S LL YCG++ ++L R+D
Sbjct: 214 VVNLFDTSKACEVLSKPQK---------SLAYLLET--YCGVTTN-----KLLQRED--- 254
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL+ MV A D +L YI + ++ +L Q
Sbjct: 255 WRQRPLSAEMVHYARTDAHYLLYIANCLINELKQ 288
>gi|119513593|ref|ZP_01632605.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
gi|119461746|gb|EAW42771.1| 3'-5' exonuclease [Nodularia spumigena CCY9414]
Length = 189
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QL P+ I G+T K +E+ + K+ H
Sbjct: 7 IAVDTETMGLLPQRDRLCLVQLCNPEGKVTAIRIAKGQTEAPNLKILMEAVNVVKIFHFA 66
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L GI++ V T+IA L R + QE
Sbjct: 67 RFDIATLRHNLGIQVQPVFCTKIASKLARTYTNRHGLKE-----------------VVQE 109
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E + + W L+E + AA+DVR+L + +M+ L ++ W +A
Sbjct: 110 LEHIELDKSSQSSDWGNAANLSEAQLNYAANDVRYLISVRQKLMEMLQREERWEIA 165
>gi|374316685|ref|YP_005063113.1| ribonuclease D [Sphaerochaeta pleomorpha str. Grapes]
gi|359352329|gb|AEV30103.1| ribonuclease D [Sphaerochaeta pleomorpha str. Grapes]
Length = 295
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 51 VIGFDCEG-VDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIH 108
V+ D EG +L +G LC++QL + YL+D + + +KA L+ + I K++
Sbjct: 27 VLAMDFEGEFNLHIYGEHLCLIQLYDGTSFYLIDPFKVQPSSLKAF---LQDAEIEKIMF 83
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
DC DS + +FGI + N+ D R P + + G L+ +
Sbjct: 84 DCASDSALVRKEFGILMQNIYDI--------------RVPALALGYTGNLSGLVSLYLGE 129
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
QE++ + W RPL V+ A DV L + + K+ ++ L
Sbjct: 130 QEEKTNGSKKKNQMTNWLARPLKNDQVQYALSDVAHLFSLKDILQAKIAEKGL 182
>gi|262394860|ref|YP_003286714.1| ribonuclease D [Vibrio sp. Ex25]
gi|262338454|gb|ACY52249.1| ribonuclease D [Vibrio sp. Ex25]
Length = 388
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFASL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G+ + E R D W RPLT+ + AA DV +L +Y ++ K+
Sbjct: 138 VEE--YLGVELDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 218 QQSLW 222
Q W
Sbjct: 188 QAGWW 192
>gi|330504002|ref|YP_004380871.1| ribonuclease D [Pseudomonas mendocina NK-01]
gi|328918288|gb|AEB59119.1| ribonuclease D [Pseudomonas mendocina NK-01]
Length = 377
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 38/170 (22%)
Query: 69 IMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128
++Q++ D YL+D ++ + + LE+ + KV+H C D E G +
Sbjct: 45 LLQVSGGDGAYLIDPLRISDW--RPFAALLEAPNVVKVLHSCSEDLEVFLRLSGSLPAPL 102
Query: 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLL---------R 179
DTQ+A Y++ G S V+ LL R
Sbjct: 103 FDTQLAAG--------------YLNL----------GFSMGYSRLVQALLDIELPKGETR 138
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
D W RPL+EL VR AA+DV L +Y +M +L Q + ++ GA
Sbjct: 139 SD---WLQRPLSELQVRYAAEDVLHLVEVYRALMARLAPQKVEWVLEDGA 185
>gi|405975309|gb|EKC39883.1| hypothetical protein CGI_10016615 [Crassostrea gigas]
Length = 429
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 43/201 (21%)
Query: 34 ASQLPAEFLEPSSERQLVIGF---------DCEGVDLCRHGSLCIMQLA-FPDAIYLVDA 83
AS+LP E +E ++ + V+G DCEGV L G L ++Q+ + +YL D
Sbjct: 2 ASKLP-EVIENTARCRQVVGILAGEQVLAVDCEGVSLGVDGPLTLVQVGNYSGEVYLFDI 60
Query: 84 IQGGETVVKA-CKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE 142
++ + + + LES I K C A LI+E +
Sbjct: 61 LKNKDLLSRGRLGTLLESGNIVK----C-----------------------ANLLIQEHK 93
Query: 143 GRKRSPDDYISFVGLLADPRYCGISYQEKEEVRV-LLRQDPQFWTYRPLTELMVRAAADD 201
GR+ +P + + + G S + K+ ++ L+ W RP+TE M+ AA D
Sbjct: 94 GRRLAPP--LKLAVICEEYGGKGFSTELKDGIKTEWLKMTGDIWAKRPMTEEMILYAAGD 151
Query: 202 VR-FLPYIYHNMMKKLNQQSL 221
V +P +Y N + L +L
Sbjct: 152 VTAIVPEVYENQKRYLEDNNL 172
>gi|126667419|ref|ZP_01738391.1| ribonuclease D [Marinobacter sp. ELB17]
gi|126628175|gb|EAZ98800.1| ribonuclease D [Marinobacter sp. ELB17]
Length = 382
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 24/155 (15%)
Query: 69 IMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128
++QL D LVD + + ALE + K+++ D E GI + V
Sbjct: 57 LVQLGLADQFRLVDPEVAEASA--GFRAALEDAQRPKLLYAVSEDLELFRHWLGIPMQGV 114
Query: 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGI--SYQEKEEVRVLLRQDPQFWT 186
+D Q+ ++F GL Y + S + + L R D W
Sbjct: 115 IDLQLG-----------------VAFAGLGFSMGYAKLVESLFGESLDKTLTRSD---WI 154
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
RPL+++ R A DDVRFL IY + + L ++ L
Sbjct: 155 SRPLSDVQQRYAIDDVRFLKPIYDWLQEVLAERGL 189
>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera]
Length = 901
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 33/182 (18%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ V + + KV+H RD L FGI
Sbjct: 251 QGLTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGI 310
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ + S LL YCG++ YQ +
Sbjct: 311 YICNMFDTGQASRVLKLERN---------SLEHLLH--HYCGVTANKEYQNGD------- 352
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGAL----YCRCF 235
W RPL M+R A +D +L +IY M +L S+ L AL Y R F
Sbjct: 353 -----WRLRPLPHEMLRYAREDTHYLLHIYDLMRTQL--LSMAELENSNALLLEVYKRSF 405
Query: 236 CI 237
I
Sbjct: 406 DI 407
>gi|56695010|ref|YP_165357.1| exonuclease [Ruegeria pomeroyi DSS-3]
gi|56676747|gb|AAV93413.1| exonuclease, putative [Ruegeria pomeroyi DSS-3]
Length = 204
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 78/201 (38%), Gaps = 28/201 (13%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ DCE + L H LC++Q++ D + ++ G+T LE+ + K+ H
Sbjct: 19 VVAIDCETMGLNPHRDRLCVIQMSGGDGNTHIVQVEKGQTAAPNLCAMLENPEVLKLFHF 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D ALY FG V T+IA L+ R GL C Q
Sbjct: 79 GRFDIAALYHAFGALTAPVYCTKIASRLVRTYTDRH----------GL---KNLC----Q 121
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
E V + +Q W L+E + AA DV +L + + +L ++ R
Sbjct: 122 ELLGVDISKQQQMSDWGAETLSEAQLDYAASDVLYLHRLREALDGRLAREG------RAD 175
Query: 230 LYCRCFCI----NENDYVDWP 246
L CF D V WP
Sbjct: 176 LAQSCFDFLPTRARLDLVGWP 196
>gi|429850597|gb|ELA25856.1| 3'-5' exonuclease [Colletotrichum gloeosporioides Nara gc5]
Length = 251
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 80/201 (39%), Gaps = 39/201 (19%)
Query: 54 FDCEGVDLCRHGSLCIMQ--LAFPDAIYLVDAIQGGETVVK-------ACKPALESSYIT 104
D EG L R G++ I+Q L+ YL+D G K LES IT
Sbjct: 36 MDLEGEYLGRLGTISIIQIYLSSRQHTYLIDVQTLGAASFSEPGANGTTLKTILESPSIT 95
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
KV D + DS+AL + F I L D Q+ + ++ KR LL + C
Sbjct: 96 KVFFDVRNDSDALIYHFNIDLRGFEDLQLME--LASRKSNKR----------LLFGLKKC 143
Query: 165 GISYQE------------KEEVRVLLRQDP----QFWTYRPLTELMVRAAADDVRFLPYI 208
+S + KE+ L D ++ RPL+ ++ DV++LP +
Sbjct: 144 IVSDAQMTTGELLEWSRVKEQGLKLFSPDSGGSYAVFSQRPLSRDILSYCVQDVQYLPRL 203
Query: 209 YHNMMKKLNQQSLWYLAVRGA 229
+ +KL W L V A
Sbjct: 204 WKTYDEKLTPA--WKLKVLQA 222
>gi|87199358|ref|YP_496615.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444]
gi|87135039|gb|ABD25781.1| ribonuclease D [Novosphingobium aromaticivorans DSM 12444]
Length = 405
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 18/150 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A +D + G + +++ + KV H +D E +Y G H
Sbjct: 42 LCLVQIADDKEAAAIDPLAPGLDMSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGKTPH 101
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA + + E I + L+ + G+S + W+
Sbjct: 102 PIFDTQIAMMAVSQSE--------QIGYSNLVES--WLGLSIDKGARF--------TDWS 143
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
RPLTE + A DV L I+ ++K+L
Sbjct: 144 RRPLTERQIEYAIGDVTHLSKIFPKLLKRL 173
>gi|300867874|ref|ZP_07112515.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
gi|300334110|emb|CBN57691.1| 3'-5' exonuclease [Oscillatoria sp. PCC 6506]
Length = 210
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 18/160 (11%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QL + I V I G+ K +E+S I K+ H + D L + I +
Sbjct: 41 LCLVQLCDAEGIVTVVRIAKGQREAPNLKKLMEASNIVKIFHFARFDMATLKYHLDIHVA 100
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW- 185
V ++IA L G+ D QE E+V + W
Sbjct: 101 PVFCSKIASKLARTYTGKHGLKD-----------------LVQELEQVELDKTAQSSDWG 143
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
L+E +R AA+DVR+L ++ L ++ W LA
Sbjct: 144 NAANLSEKQLRYAANDVRYLISAREKLITMLQREDRWQLA 183
>gi|348041370|ref|NP_998833.2| exosome component 10 [Xenopus (Silurana) tropicalis]
Length = 890
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 31/178 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ Y++D ++ + + + I KV+H
Sbjct: 314 AVDLEHHSYRSFLGLTCLMQISTRTEDYIIDVLELRSNMY-ILNESFTNPSIIKVLHGAD 372
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A ++ GR S D + YC + ++
Sbjct: 373 SDIEWLQKDFGLYIVNMFDTHQAARIL--NLGR-HSLDHLLRL--------YCNVESDKR 421
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL-----NQQSLWYL 224
++ W RPL E M+ A D +L +IY M L QQ+L L
Sbjct: 422 YQLAD--------WRIRPLPEEMIEYARADTHYLLFIYDKMRTALLGAANEQQNLLQL 471
>gi|45708813|gb|AAH67962.1| exosome component 10 [Xenopus (Silurana) tropicalis]
Length = 883
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 31/178 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ Y++D ++ + + + I KV+H
Sbjct: 307 AVDLEHHSYRSFLGLTCLMQISTRTEDYIIDVLELRSNMY-ILNESFTNPSIIKVLHGAD 365
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A ++ GR S D + YC + ++
Sbjct: 366 SDIEWLQKDFGLYIVNMFDTHQAARIL--NLGR-HSLDHLLRL--------YCNVESDKR 414
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL-----NQQSLWYL 224
++ W RPL E M+ A D +L +IY M L QQ+L L
Sbjct: 415 YQLAD--------WRIRPLPEEMIEYARADTHYLLFIYDKMRTALLGAANEQQNLLQL 464
>gi|110633474|ref|YP_673682.1| ribonuclease D [Chelativorans sp. BNC1]
gi|110284458|gb|ABG62517.1| ribonuclease D [Chelativorans sp. BNC1]
Length = 392
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 19/152 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P LVD + G + + + + + KV H ++D E +Y + G+ H
Sbjct: 39 LCLIQMAAPGVTALVDPLADGMDLAPFFR-LMGNEQVVKVFHAARQDIEIIYNRGGLIPH 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D IS+ L+ R G + W
Sbjct: 98 PIFDTQVAAMVC--------GFGDSISYDQLVL--RITGEHIDKTSRF--------TDWR 139
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
+RPL+E +R A DV L +Y ++ +L +
Sbjct: 140 HRPLSEKQLRYALADVTHLIPVYAHLTTELQR 171
>gi|359481017|ref|XP_002269553.2| PREDICTED: exosome component 10-like [Vitis vinifera]
Length = 931
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 74/182 (40%), Gaps = 33/182 (18%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ V + + KV+H RD L FGI
Sbjct: 281 QGLTCLMQISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGI 340
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ + S LL YCG++ YQ +
Sbjct: 341 YICNMFDTGQASRVLKLERN---------SLEHLLH--HYCGVTANKEYQNGD------- 382
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGAL----YCRCF 235
W RPL M+R A +D +L +IY M +L S+ L AL Y R F
Sbjct: 383 -----WRLRPLPHEMLRYAREDTHYLLHIYDLMRTQL--LSMAELENSNALLLEVYKRSF 435
Query: 236 CI 237
I
Sbjct: 436 DI 437
>gi|326502996|dbj|BAJ99123.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 19/157 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ +++D ++ + K + KV+H RD L F +
Sbjct: 68 QGLTCLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFRV 127
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A +++ + S LL +CG++ ++ D
Sbjct: 128 YVCNLFDTGQASRVLQMERN---------SLEHLLH--HFCGVTAN-----KIYQNAD-- 169
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL++ M++ A +D +L YIY M +L ++S
Sbjct: 170 -WRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRES 205
>gi|113475312|ref|YP_721373.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
gi|110166360|gb|ABG50900.1| 3'-5' exonuclease [Trichodesmium erythraeum IMS101]
Length = 207
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 67/175 (38%), Gaps = 17/175 (9%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+ D E + L R LC++QL P I G+ K +E++ I KV H
Sbjct: 25 MAVDTETMGLLPRRDRLCLVQLCDPLGQVTAIRIHKGQQEAPNLKQLMEANSIVKVFHFA 84
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L GIK+ + T+I+ L G+ D + + D
Sbjct: 85 RFDVAMLQHYLGIKVSPIFCTKISSKLARTYTGKHGLKDLVMELEKVELDKS-------- 136
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
Q + LTE + AA+DVR+L + + K L ++ W LA
Sbjct: 137 --------SQSSDWGNAENLTEKQLNYAANDVRYLLSVREKLSKILKREERWELA 183
>gi|119476222|ref|ZP_01616573.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
gi|119450086|gb|EAW31321.1| ribonuclease D [marine gamma proteobacterium HTCC2143]
Length = 384
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 26/124 (20%)
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR 162
I KV+H C D E F + ++DTQIA L D Y +G
Sbjct: 85 IVKVLHSCSEDLEVFERLFQVLPQPLIDTQIAAGL-----------DGYGFSLG------ 127
Query: 163 YCGISYQEKEE----VRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
YQ+ E + V + W RPLTE + AA DV +LP +Y + + L
Sbjct: 128 -----YQKMTEALLQIHVAKGETRSNWLQRPLTESQIHYAALDVAYLPEMYQQLKQSLES 182
Query: 219 QSLW 222
+ W
Sbjct: 183 KGRW 186
>gi|332141837|ref|YP_004427575.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
gi|327551859|gb|AEA98577.1| ribonuclease D [Alteromonas macleodii str. 'Deep ecotype']
Length = 385
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Query: 45 SSERQLVIGFDCEGV---DLCRHGSLCIMQLAFPDAIYLVD--AIQGGETVVKACKPALE 99
+++RQ + D E V L H L ++QL + L+D AI + V LE
Sbjct: 18 AAQRQEAVALDTEFVRTKTLTPH--LGLIQLYDGHQLVLIDPLAIDNMQPFV----ALLE 71
Query: 100 SSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPD-DYISFVGLL 158
++ + KV+H C D EA F V DTQIA S+++ P Y V LL
Sbjct: 72 NTEVVKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILD------MGPSLGYAKLVELL 125
Query: 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
C IS + E R D W RPL E + AA+DV +L Y +
Sbjct: 126 -----CEISLDKGES-----RTD---WLARPLREAQLSYAANDVLYLLPCYQQL 166
>gi|146099475|ref|XP_001468653.1| exosome subunit rrp6p homologue, putative [Leishmania infantum
JPCM5]
gi|134073021|emb|CAM71740.1| exosome subunit rrp6p homologue, putative [Leishmania infantum
JPCM5]
Length = 743
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C+MQ++ + ++VD ++ + + A P + I KV+H
Sbjct: 255 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL-RSSMGALAPVFLNPSILKVLHGA 313
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L F + + N DT +A + ++ A +C + +
Sbjct: 314 REDIRWLQKDFSLYVVNFFDTGVALQTL------------HMPHSLAFAVDHFCQVKLNK 361
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
K + W RPL+ MV A D FL Y+Y +
Sbjct: 362 KYQT--------ADWRVRPLSAEMVHYARQDTHFLLYVYDRL 395
>gi|449548764|gb|EMD39730.1| hypothetical protein CERSUDRAFT_112032 [Ceriporiopsis subvermispora
B]
Length = 850
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G +C+MQ++ + ++VD +Q E + + L I KV+H + D L F +
Sbjct: 276 GFVCLMQISTRERDFIVDVLQVREEM-EELNEVLTDPRIVKVLHGAESDIVWLQQDFNLY 334
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A ++E +G L + YC + ++ ++
Sbjct: 335 VVNLFDTYHASKVLEFPRHN----------LGTLLE-MYCDFTPDKRYQL--------AD 375
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL E M++ A D FL YIY N+ L
Sbjct: 376 WRIRPLPEEMLQYARSDTHFLLYIYDNLRNAL 407
>gi|427720618|ref|YP_007068612.1| 3'-5' exonuclease [Calothrix sp. PCC 7507]
gi|427353054|gb|AFY35778.1| 3'-5' exonuclease [Calothrix sp. PCC 7507]
Length = 209
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QL + V I G+T K LE++ I KV H
Sbjct: 27 IAIDTETMGLLPQRDRLCLVQLCNLEGNVAVVRIAKGQTDAANLKKLLEAANIQKVFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L + GI++ + T+IA L R D QE
Sbjct: 87 RFDVATLRYHLGIQVQPIFCTKIASKLARTYTNRHGLKD-----------------VVQE 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E+V + W L+ + AA+DVR+L + + + L ++ W LA
Sbjct: 130 LEKVELDKSAQSSDWGNAANLSADQLSYAANDVRYLLSVQQKLTEMLKREQRWELA 185
>gi|269215504|ref|ZP_06159358.1| ribonuclease D [Slackia exigua ATCC 700122]
gi|269130991|gb|EEZ62066.1| ribonuclease D [Slackia exigua ATCC 700122]
Length = 399
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Query: 51 VIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E + + C LC++QL + +VD ++ + + + + + + KV H
Sbjct: 23 VVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKVHD--LSPLRDLMVDTSVVKVFHA 80
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+D + L+ + + + DTQ+A +L+ + + + L+ + CG+ +
Sbjct: 81 ATQDLDILFHELDVMPDPIFDTQVAAALLGQTV--------QVGYGTLVLNE--CGVRLK 130
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ + W RPL+ + A +DV +LP IY + ++L
Sbjct: 131 KADSF--------TDWARRPLSSSQINYALEDVVYLPRIYRQLTERL 169
>gi|340723182|ref|XP_003399974.1| PREDICTED: exosome component 10-like [Bombus terrestris]
Length = 1295
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 34/196 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ D YL+D + + + S I KV H
Sbjct: 278 AVDLEHHSYRSFQGITCLMQISTGDTDYLIDTL-SLRSELHELNEIFTKSTILKVFHGAD 336
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D + L + + N+ DT + K+ Y+S LL YC +
Sbjct: 337 LDIQWLQRDLSLYVVNMFDTH---------QAAKQLNLPYLSLAYLLK--HYCNVD---- 381
Query: 172 EEVRVLLRQDPQF----WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVR 227
D F W RPL E +++ A +D +L YI + L + + +
Sbjct: 382 --------PDKHFQMADWRIRPLPEKLIKYAREDTHYLLYIKDLLRNALIDVANGQINIL 433
Query: 228 GALYCRCFCINENDYV 243
A+Y R I +N Y+
Sbjct: 434 KAVYDRSTEICKNTYI 449
>gi|395766197|ref|ZP_10446774.1| ribonuclease D [Bartonella sp. DB5-6]
gi|395409707|gb|EJF76293.1| ribonuclease D [Bartonella sp. DB5-6]
Length = 384
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + ++ + + KV H ++D E +Y GI
Sbjct: 40 LCLIQLASPDTTVLIDPI-SQDIDLQPFFDLMVDKKVVKVFHAARQDIETIYHLGGIIPS 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA S+ D IS+ ++ R G +Q + R W+
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIVQ--RCTG--HQLDKSSRF------TDWS 140
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
YRPL+E + A DV +L IY + K+L N++ W
Sbjct: 141 YRPLSEKQLLYALADVTYLRDIYLLLKKQLEKNKRIHW 178
>gi|410941522|ref|ZP_11373317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
gi|410783321|gb|EKR72317.1| 3'-5' exonuclease [Leptospira noguchii str. 2006001870]
Length = 372
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ ++ E I KV H
Sbjct: 7 ISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LEGLGNLFEDKKILKVFHSA 64
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG + N+ DT + L++ ++ DY Y I +
Sbjct: 65 IDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 113
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 114 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMREELIKRNLYEEAI 161
>gi|171689072|ref|XP_001909476.1| hypothetical protein [Podospora anserina S mat+]
gi|170944498|emb|CAP70609.1| unnamed protein product [Podospora anserina S mat+]
Length = 328
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 20/194 (10%)
Query: 30 IVTNASQLPAEFLE---PSSERQLVIGFDCEGVDLCRHGSLCIMQLAFP--DAIYLVDAI 84
+VTN L FL PSS I D EG +L R G+L ++ + P + ++D
Sbjct: 14 LVTNVQAL-RNFLATIGPSSS----IYVDLEGTNLGRGGTLDLITVLVPPDRKVRIIDVK 68
Query: 85 QGGETVVKA---------CKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAY 135
G K LE I K + D + D++AL + + + V+D Q+
Sbjct: 69 AMGNQAFTTPSKKDDNVTLKSILEDPSIRKYLWDVRNDADALKSLYHVAISGVIDLQLLE 128
Query: 136 SLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQ-DPQFWTYRPLTELM 194
+L + + D L D + + KE++R + D ++ RP T +
Sbjct: 129 NLTRQGNSFYVTGLDKAVENDLRLDQQEQIEWKKTKEDIRKRMASGDSGIFSTRPFTTPV 188
Query: 195 VRAAADDVRFLPYI 208
+R A DV+FLP +
Sbjct: 189 LRYCAGDVQFLPLL 202
>gi|85059311|ref|YP_455013.1| ribonuclease D [Sodalis glossinidius str. 'morsitans']
gi|84779831|dbj|BAE74608.1| ribonuclease D [Sodalis glossinidius str. 'morsitans']
Length = 380
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 28/196 (14%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVD--AIQGGETVVKACKPALESSYITKVIH 108
+ D E V C + L ++Q+ +A+ L+D AI + + L +TK++H
Sbjct: 26 VAVDTEFVRTCTYYPQLGLIQMFDGEALTLIDPLAITDWQPFI----ALLADEQVTKLLH 81
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
C D E + FG ++DTQ+ + GR S F L+A+ +
Sbjct: 82 ACSEDLEVFWHSFGQMPVPMIDTQVLAAFT----GRALS----CGFAALVAETLDVTLDK 133
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRG 228
E R D W RPL++ AA DV +L + H ++ + Q W A +
Sbjct: 134 TES-------RTD---WLARPLSKRQCDYAAADVYWLLPMAHKLIAQTQQAGWWSQASQE 183
Query: 229 ALYCRCFCINENDYVD 244
C C + D
Sbjct: 184 ---CEAICQRRREVAD 196
>gi|414864885|tpg|DAA43442.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 577
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 19/159 (11%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + KV+H RD L F I
Sbjct: 186 QGLTCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHI 245
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A ++ Q R + F G+ A Y
Sbjct: 246 YVCNLFDTGQASRVL--QMERNSLEHLLLHFCGVTAKKEYQNAD---------------- 287
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
W RPL + M++ A +D +L YIY M ++L ++S +
Sbjct: 288 -WRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQRESTF 325
>gi|456983567|gb|EMG19831.1| 3'-5' exonuclease [Leptospira interrogans serovar Copenhageni str.
LT2050]
Length = 388
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ +++ E I K+ H
Sbjct: 29 ISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LESLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG + N+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELIKRNLYEEAI 183
>gi|398334995|ref|ZP_10519700.1| ribonuclease III [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 366
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ + E I K+ H
Sbjct: 7 ISIDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LDGLGTLFEDKKILKIFHSA 64
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG K N+ DT + L++ ++ DY Y I +
Sbjct: 65 IDDIKALKKDFGFKFVNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 113
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 114 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELTKRNLYEEAL 161
>gi|398022862|ref|XP_003864593.1| unnamed protein product [Leishmania donovani]
gi|322502828|emb|CBZ37911.1| unnamed protein product [Leishmania donovani]
Length = 743
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C+MQ++ + ++VD ++ + + A P + I KV+H
Sbjct: 255 IAVDLEHHDFYSYQGFTCLMQISTREEDFIVDCLKL-RSSMGALAPVFLNPSILKVLHGA 313
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L F + + N DT +A + ++ A +C + +
Sbjct: 314 REDIRWLQKDFSLYVVNFFDTGVALQTL------------HMPHSLAFAVDHFCQVKLNK 361
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
K + W RPL+ MV A D FL Y+Y +
Sbjct: 362 KYQT--------ADWRVRPLSAEMVHYARQDTHFLLYVYDRL 395
>gi|440292006|gb|ELP85248.1| exosome complex exonuclease RRP6, putative [Entamoeba invadens IP1]
Length = 517
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 20/160 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
+G C+MQ++ ++VD I +++ +P + I KV H C D L + FG+
Sbjct: 221 NGFACLMQISTRSEDFVVDVITLRDSIHLLNEP-FTNPKIEKVFHGCDFDMVWLSYNFGL 279
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N D+ A ++ Q + S LL +Y G+ +K ++
Sbjct: 280 YVVNNFDSGQAARCLKLQ---------HFSLKFLLE--KYVGVEADKKYQLAD------- 321
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWY 223
W RPLT+ M+ A D +L YI M + +Q++ Y
Sbjct: 322 -WRIRPLTQEMINYARGDTHYLLYICDLMRNECLEQNVLY 360
>gi|357120688|ref|XP_003562057.1| PREDICTED: exosome component 10-like [Brachypodium distachyon]
Length = 690
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 19/157 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + KV+H RD L F I
Sbjct: 186 QGLTCLMQISTRTEDFIVDTLKLRIYLGPYLQKHFKDPTKRKVMHGADRDIIWLQRDFRI 245
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A +++ + S LL +CG++ +V D
Sbjct: 246 YVCNLFDTGQASRVLQMERN---------SLEHLLH--HFCGVTAN-----KVYQNAD-- 287
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL++ M++ A +D +L YIY M +L ++S
Sbjct: 288 -WRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQKES 323
>gi|293334443|ref|NP_001170525.1| uncharacterized protein LOC100384536 [Zea mays]
gi|238005848|gb|ACR33959.1| unknown [Zea mays]
gi|414864884|tpg|DAA43441.1| TPA: hypothetical protein ZEAMMB73_373944 [Zea mays]
Length = 666
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 19/159 (11%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + KV+H RD L F I
Sbjct: 186 QGLTCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHI 245
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A ++ Q R + F G+ A Y
Sbjct: 246 YVCNLFDTGQASRVL--QMERNSLEHLLLHFCGVTAKKEYQNAD---------------- 287
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
W RPL + M++ A +D +L YIY M ++L ++S +
Sbjct: 288 -WRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQRESTF 325
>gi|326388937|ref|ZP_08210519.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370]
gi|326206537|gb|EGD57372.1| ribonuclease D [Novosphingobium nitrogenifigens DSM 19370]
Length = 445
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A +D + G + +++ + KV H +D E +Y G H
Sbjct: 42 LCLVQIADDKEAAAIDPMAPGIDLSPLLDLLVDNEDVLKVFHAGGQDVEIIYNLTGRTPH 101
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA + + E I + L+ + G S + W+
Sbjct: 102 PIFDTQIAMMAVSQSE--------QIGYSNLVES--WLGFSIDKGARF--------TDWS 143
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
RPLTE + A DV L I+ ++K+L
Sbjct: 144 RRPLTERQIEYAIGDVTHLSKIFPRILKRL 173
>gi|242218119|ref|XP_002474853.1| predicted protein [Postia placenta Mad-698-R]
gi|220725980|gb|EED79945.1| predicted protein [Postia placenta Mad-698-R]
Length = 882
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G +C+MQL+ + ++VD + + + +A S I KV+H + D L F +
Sbjct: 283 GFVCLMQLSTREEDWVVDTLAVRDEM-EALNEVFTDSQIVKVLHGAESDIVWLQQDFNLY 341
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A +++ S LL YC + ++ ++
Sbjct: 342 IVNLFDTYHASKVLDFPRH---------SLATLLE--MYCDFTADKRYQL--------AD 382
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL E M+ A D FL YIY N+ L
Sbjct: 383 WRIRPLPEEMLAYARSDTHFLLYIYDNLRNAL 414
>gi|220907657|ref|YP_002482968.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
gi|219864268|gb|ACL44607.1| 3'-5' exonuclease [Cyanothece sp. PCC 7425]
Length = 217
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 68/175 (38%), Gaps = 17/175 (9%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QLA P + V I G+ K LE TKV H
Sbjct: 35 IAVDTETMGLKPQRDRLCLVQLAHPQGLITVIRIGQGQRSAPHLKQLLEHPGTTKVFHFA 94
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L + I + + T+IA L R D G+ D
Sbjct: 95 RFDITTLRYHLDIWVQPLFCTKIASKLARTYSPRHGLKDLIRELEGVELDKTV------- 147
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
Q + LTE +R A++DVR+L +++ L +++ W LA
Sbjct: 148 ---------QSSDWGNPNNLTEEQLRYASNDVRYLLAAQAKLVEMLQRENRWQLA 193
>gi|456355676|dbj|BAM90121.1| ribonuclease D [Agromonas oligotrophica S58]
Length = 382
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD ++DA+ G +K+ + + + KV H ++D E ++ + GI H
Sbjct: 39 LCVVQLASPDEAVVIDALADG-IDLKSFFELMANEKVLKVFHAARQDIEIIWHRAGIVPH 97
Query: 127 NVVDTQIA 134
+ DTQ+A
Sbjct: 98 PIFDTQVA 105
>gi|166240642|ref|XP_645586.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
gi|165988709|gb|EAL71650.2| 3'-5' exonuclease [Dictyostelium discoideum AX4]
Length = 1195
Score = 45.1 bits (105), Expect = 0.041, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 20/153 (13%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ +L+D + + + + I KV+H D + L FG+
Sbjct: 281 QGFTCLMQISTRSEDFLIDTLLL-RSHIHMLNQVFTNPSIVKVLHGSDSDIKWLQRDFGV 339
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A ++E P ++F+ YC I +K ++
Sbjct: 340 YIVNMFDTGQASRILE-------YPSASLAFLLKF----YCAIDANKKYQL--------A 380
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W R L E M++ A +D +L YIY + +L
Sbjct: 381 DWRIRKLPEEMIKYAREDTHYLLYIYDRLRNEL 413
>gi|163745220|ref|ZP_02152580.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
HEL-45]
gi|161382038|gb|EDQ06447.1| 3'- 5' exonuclease family protein, putative [Oceanibulbus indolifex
HEL-45]
Length = 204
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 18/167 (10%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
++ DCE + L H LC++QL+ D + I G+T LE+ ++ K+ H
Sbjct: 19 MVAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQIAKGQTEAPNLCALLENPHVLKLFHY 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D A+ FG V T+IA LI R GL + C Q
Sbjct: 79 GRFDIAAMLNAFGATAAPVYCTKIASRLIRTYTDRH----------GL---AKLC----Q 121
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
E V + +Q W + LT+ + AA DV +L + + K+L
Sbjct: 122 ELLSVDISKQQQSSDWGAKELTQAQIDYAASDVLYLHRLRDELNKRL 168
>gi|45659084|ref|YP_003170.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|294828464|ref|NP_714272.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|386075688|ref|YP_005990008.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|417761741|ref|ZP_12409746.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|417771399|ref|ZP_12419294.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417772941|ref|ZP_12420827.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|417785994|ref|ZP_12433691.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|418667421|ref|ZP_13228833.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|418671067|ref|ZP_13232422.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|418683302|ref|ZP_13244507.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418692063|ref|ZP_13253144.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|418702415|ref|ZP_13263323.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418704115|ref|ZP_13264995.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|418710116|ref|ZP_13270898.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418728912|ref|ZP_13287481.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|421083604|ref|ZP_15544478.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|421101603|ref|ZP_15562215.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115524|ref|ZP_15575929.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421126273|ref|ZP_15586510.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421135637|ref|ZP_15595758.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|45602330|gb|AAS71807.1| ribonuclease D [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|293386317|gb|AAN51290.2| ribonuclease D [Leptospira interrogans serovar Lai str. 56601]
gi|353459480|gb|AER04025.1| ribonuclease D [Leptospira interrogans serovar Lai str. IPAV]
gi|400324875|gb|EJO77159.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|400358126|gb|EJP14242.1| 3'-5' exonuclease [Leptospira interrogans str. FPW2026]
gi|409942474|gb|EKN88086.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000624]
gi|409946596|gb|EKN96605.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409950823|gb|EKO05345.1| 3'-5' exonuclease [Leptospira interrogans str. C10069]
gi|410012826|gb|EKO70912.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410020301|gb|EKO87105.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410368775|gb|EKP24151.1| 3'-5' exonuclease [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410433965|gb|EKP78302.1| 3'-5' exonuclease [Leptospira santarosai str. HAI1594]
gi|410436223|gb|EKP85342.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410577276|gb|EKQ40272.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000621]
gi|410581930|gb|EKQ49736.1| 3'-5' exonuclease [Leptospira interrogans str. 2002000623]
gi|410757024|gb|EKR18642.1| 3'-5' exonuclease [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410758584|gb|EKR24813.1| 3'-5' exonuclease [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410766337|gb|EKR37024.1| 3'-5' exonuclease [Leptospira interrogans serovar Hebdomadis str.
R499]
gi|410769574|gb|EKR44805.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410776315|gb|EKR56294.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12758]
gi|455667095|gb|EMF32456.1| 3'-5' exonuclease [Leptospira interrogans serovar Pomona str. Fox
32256]
gi|455792168|gb|EMF43937.1| 3'-5' exonuclease [Leptospira interrogans serovar Lora str. TE
1992]
gi|456823784|gb|EMF72221.1| 3'-5' exonuclease [Leptospira interrogans serovar Canicola str.
LT1962]
gi|456966971|gb|EMG08438.1| 3'-5' exonuclease [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 388
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ +++ E I K+ H
Sbjct: 29 ISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LESLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG + N+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELIKRNLYEEAI 183
>gi|406989767|gb|EKE09498.1| hypothetical protein ACD_16C00152G0001 [uncultured bacterium]
Length = 383
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 22/193 (11%)
Query: 28 IHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHG-SLCIMQLAFPDAIYLVDAIQG 86
+ I+T S L E E +++ I D E V + LC++Q+ + +++D +
Sbjct: 1 MKIITKTSDL-KELCERAAQESF-ITLDTEFVRETTYWPQLCLIQMGLAEEAFIIDPL-S 57
Query: 87 GETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKR 146
E + L+ S + KVIH ++D E Y G ++ DTQIA +
Sbjct: 58 KELDLAPFFTLLQKSELIKVIHSGRQDVEIFYHMTGKIPTHLFDTQIAAMVC-------- 109
Query: 147 SPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLP 206
D +++ L+ +Y +S + W RPLT+ + A DV L
Sbjct: 110 GFGDSVAYEALVR--QYAKVSLDKSSRY--------THWAQRPLTDKQLTYALGDVTHLR 159
Query: 207 YIYHNMMKKLNQQ 219
IY + KL ++
Sbjct: 160 VIYEKLYAKLVKE 172
>gi|402829193|ref|ZP_10878069.1| ribonuclease D [Slackia sp. CM382]
gi|402284174|gb|EJU32677.1| ribonuclease D [Slackia sp. CM382]
Length = 397
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 21/167 (12%)
Query: 51 VIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E + + C LC++QL + +VD ++ + + + + + + KV H
Sbjct: 21 VVAIDTEFLRERCYWAKLCLIQLGTDERSVVVDPLKVRD--LSPLRDLMVDTSVVKVFHA 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+D + L+ + + + DTQ+A +L+ + + + L+ + CG+ +
Sbjct: 79 ATQDLDILFHELDVMPDPIFDTQVAAALLGQTV--------QVGYGTLVLNE--CGVRLK 128
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ + W RPL+ + A +DV +LP IY + ++L
Sbjct: 129 KADSF--------TDWARRPLSSSQINYALEDVVYLPRIYRQLTERL 167
>gi|91228923|ref|ZP_01262822.1| ribonuclease D, partial [Vibrio alginolyticus 12G01]
gi|91187531|gb|EAS73864.1| ribonuclease D [Vibrio alginolyticus 12G01]
Length = 277
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 83 LKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFASL 134
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G+ + E R D W RPLT+ + AA DV +L +Y + K+
Sbjct: 135 VEE--YLGVELDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLFDKVT 184
Query: 218 QQSLW 222
Q W
Sbjct: 185 QAGWW 189
>gi|26452498|dbj|BAC43334.1| putative nucleolar protein [Arabidopsis thaliana]
Length = 578
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD + + + + KV+H RD L FGI
Sbjct: 295 QGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGI 354
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQD 181
+ N+ DT A ++ +R+ +++ F G+ A+ Y
Sbjct: 355 YVCNLFDTGQASRVL----NLERNSLEFLLQHFCGVTANKEYQNAD-------------- 396
Query: 182 PQFWTYRPLTELMVRAAADDVRFLPYIY 209
W RPL E M R A +D +L YIY
Sbjct: 397 ---WRIRPLPEEMTRYAREDTHYLLYIY 421
>gi|421121879|ref|ZP_15582169.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
gi|410345216|gb|EKO96335.1| 3'-5' exonuclease [Leptospira interrogans str. Brem 329]
Length = 388
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ +++ E I K+ H
Sbjct: 29 ISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LESLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG + N+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELIKRNLYEEAI 183
>gi|242042163|ref|XP_002468476.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
gi|241922330|gb|EER95474.1| hypothetical protein SORBIDRAFT_01g046585 [Sorghum bicolor]
Length = 702
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 19/159 (11%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + KV+H RD L F I
Sbjct: 186 QGLTCLMQISTRTEDFIVDTLKLRIYIGLYLQEPFKDPTKRKVMHGADRDIMWLQRDFHI 245
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A +++ + R + F G+ A Y
Sbjct: 246 YVCNLFDTGQASRVLQME--RNSLEHLLLHFCGVTAKKEYQNAD---------------- 287
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
W RPL + M++ A +D +L YIY M ++L ++S +
Sbjct: 288 -WRSRPLPDEMIKYAREDTHYLLYIYDLMRQRLQKESTF 325
>gi|403223072|dbj|BAM41203.1| uncharacterized protein TOT_030000466 [Theileria orientalis strain
Shintoku]
Length = 820
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G +C++QL+ P+ Y+VD T + I KV+H D E L FG+
Sbjct: 456 RGIVCLIQLSTPEENYIVDPFDIF-TKLNILNVVTTDPRILKVMHGSDNDIEWLQRDFGV 514
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT+ A ++ +E S + L+ +Y + +K ++
Sbjct: 515 YIVNMFDTRQAAKVLNLKEE---------SLMKLI--DKYFNVKMNKKYQL--------A 555
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA-VRGALYCRCFCINENDY 242
W+ RPL E M+ A D +L +Y M ++ S + +R Y + C+ + Y
Sbjct: 556 DWSKRPLDEEMLNYACSDSNYLIPLYIKMKNEILSTSDGKVKMIRVMNYSKNICLTQ--Y 613
Query: 243 VD 244
VD
Sbjct: 614 VD 615
>gi|195174216|ref|XP_002027875.1| GL18050 [Drosophila persimilis]
gi|194115556|gb|EDW37599.1| GL18050 [Drosophila persimilis]
Length = 284
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 82/206 (39%), Gaps = 20/206 (9%)
Query: 49 QLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIH 108
QL I E RH + ++ +A + Y+ D IQ K LE+ Y KV+H
Sbjct: 64 QLSISVIAEPSLYGRHRPVAVLVVATANQTYVFD-IQALGAFFPELKKLLEAKYPRKVVH 122
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
R S+ L+++ IKL DT +A + + + P+ S + + C
Sbjct: 123 YSHRISDQLFYKHQIKLTGFSDTFVALCVARQDKSACSLPEAISSVLNIPLRELLC---- 178
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL---PYIYHNMMKKLNQQSLWYLA 225
+EV + + Q +T RPL+ D RFL + H M +L +
Sbjct: 179 ---DEV-TGVSESRQLFTARPLS-------GDQFRFLGRMAILQHQMHDRLTFGHICAGM 227
Query: 226 VR-GALYCRCFCINENDYVDWPPLPP 250
R A + + FC N Y P + P
Sbjct: 228 QRMSATFSQSFCRFRNGYDVAPYMGP 253
>gi|172035932|ref|YP_001802433.1| ribonuclease D [Cyanothece sp. ATCC 51142]
gi|354556022|ref|ZP_08975320.1| 3'-5' exonuclease [Cyanothece sp. ATCC 51472]
gi|171697386|gb|ACB50367.1| ribonuclease D [Cyanothece sp. ATCC 51142]
gi|353552021|gb|EHC21419.1| 3'-5' exonuclease [Cyanothece sp. ATCC 51472]
Length = 214
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 51 VIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + L + LC++QL P I+ G+ + K LE+ I K+ H
Sbjct: 31 AIAIDTETMGLIPQRDRLCLVQLCDPSGYVTAIRIEKGQQTAENLKQLLENQNIIKIFHY 90
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D + F I+ + T++A L G GL A Q
Sbjct: 91 ARFDVAQFKYNFAIETEPIFCTKVASKLARTYTGSH----------GLKA-------LVQ 133
Query: 170 EKEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVR 227
E E V + W + L+E + AA+DVR+L + ++ L ++ W LA +
Sbjct: 134 EIEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIPLKEQLITMLQREERWELAQK 192
>gi|218440719|ref|YP_002379048.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
gi|218173447|gb|ACK72180.1| 3'-5' exonuclease [Cyanothece sp. PCC 7424]
Length = 209
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 70/183 (38%), Gaps = 18/183 (9%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + L H LC++QL P+ + G+ K +E+S ITKV H
Sbjct: 26 AIAVDTETMGLNPHRDRLCLIQLCDPEGYVTAIRVTKGQQEAPKLKQLMEASNITKVFHF 85
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D L FGI+ + T+IA L + G+ D
Sbjct: 86 ARFDVAQLRHHFGIETTPIFCTKIASKLARTYTSSHGLKSLVLELEGVELDKT------- 138
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
Q + L+E + AA+DVR+L + ++ LN+++ LA R
Sbjct: 139 ---------AQSSDWGNADKLSEEQLSYAANDVRYLLGVKEKLISMLNRENRMELA-RNC 188
Query: 230 LYC 232
C
Sbjct: 189 FNC 191
>gi|342179230|sp|Q1QLI8.2|RND_NITHX RecName: Full=Ribonuclease D; Short=RNase D
Length = 382
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A PD +VDA+ G +K + + + KV H ++D E ++ Q GI H
Sbjct: 39 LCVVQMASPDEAVVVDALAEG-IDLKPFFDLMSNERVLKVFHAARQDIEIVWHQAGIIPH 97
Query: 127 NVVDTQIA 134
+ DTQ+A
Sbjct: 98 PIFDTQVA 105
>gi|357384625|ref|YP_004899349.1| ribonuclease D [Pelagibacterium halotolerans B2]
gi|351593262|gb|AEQ51599.1| ribonuclease D [Pelagibacterium halotolerans B2]
Length = 386
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 25/155 (16%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q A D ++D + + + L ++TKV H ++D E FG+ H
Sbjct: 39 LCLIQAATADRAVIIDPL-ADDIDLAPFAELLADRHVTKVFHAARQDIEIFVKLFGVVPH 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYI-SFVGLLAD--PRYCGISYQEKEEVRVLLRQDPQ 183
+ DTQ+A S+ G S D+ + S VG D R+
Sbjct: 98 PIFDTQVAASVC--GHGDSVSYDNLVRSVVGEQIDKSSRFTD------------------ 137
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W++RPLTE + A DV L IY + ++++
Sbjct: 138 -WSHRPLTEKQLNYALADVTHLRDIYGQLRTEIDK 171
>gi|10176710|dbj|BAB09932.1| nucleolar protein-like [Arabidopsis thaliana]
Length = 834
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD + + + + KV+H RD L FGI
Sbjct: 258 QGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGI 317
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQD 181
+ N+ DT A ++ +R+ +++ F G+ A+ Y
Sbjct: 318 YVCNLFDTGQASRVL----NLERNSLEFLLQHFCGVTANKEYQNAD-------------- 359
Query: 182 PQFWTYRPLTELMVRAAADDVRFLPYIY 209
W RPL E M R A +D +L YIY
Sbjct: 360 ---WRIRPLPEEMTRYAREDTHYLLYIY 384
>gi|326496869|dbj|BAJ98461.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 524
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G C+MQ++ +++D ++ + K + KV+H RD L F +
Sbjct: 1 GLTCLMQISTRSEDFIIDTLKLRIYIGSYLKEIFKDPTKRKVMHGADRDIMWLQRDFRVY 60
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A +++ + S LL +CG++ ++ D
Sbjct: 61 VCNLFDTGQASRVLQMERN---------SLEHLL--HHFCGVTAN-----KIYQNAD--- 101
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL++ M++ A +D +L YIY M +L ++S
Sbjct: 102 WRSRPLSDEMIKYAREDTHYLLYIYDLMRLRLQRES 137
>gi|254282849|ref|ZP_04957817.1| ribonuclease D [gamma proteobacterium NOR51-B]
gi|219679052|gb|EED35401.1| ribonuclease D [gamma proteobacterium NOR51-B]
Length = 372
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
+ ++Q+A D ++L+D + +T L+ S +TKV+H D E G+
Sbjct: 41 VALVQIATADQVWLIDPLPLTDT--GPLAELLQKSTLTKVLHSAGEDLEVFQAWLGVLPS 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ A +L+ G +S+ L+ C +S + E W
Sbjct: 99 PLFDTQKAAALLGYGFG--------LSYAKLV--EAVCQVSLDKDET--------NSDWL 140
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
RPLT R AA DV +L +Y ++ Q
Sbjct: 141 VRPLTSAQCRYAAQDVTYLVDVYSRLLGDAGTQG 174
>gi|115450833|ref|NP_001049017.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|108706273|gb|ABF94068.1| 3'-5' exonuclease family protein, expressed [Oryza sativa Japonica
Group]
gi|113547488|dbj|BAF10931.1| Os03g0157800 [Oryza sativa Japonica Group]
gi|215695202|dbj|BAG90393.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624215|gb|EEE58347.1| hypothetical protein OsJ_09469 [Oryza sativa Japonica Group]
Length = 600
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + K + KV+H RD L F I
Sbjct: 180 QGLTCLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHI 239
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ + S LL +CG++ YQ +
Sbjct: 240 YVCNLFDTGQASRVLQMERN---------SLEHLLR--HFCGVTANKEYQNAD------- 281
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL++ M++ A +D +L Y+Y M +L ++S
Sbjct: 282 -----WRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKES 317
>gi|92117640|ref|YP_577369.1| ribonuclease D [Nitrobacter hamburgensis X14]
gi|91800534|gb|ABE62909.1| ribonuclease D [Nitrobacter hamburgensis X14]
Length = 396
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A PD +VDA+ G +K + + + KV H ++D E ++ Q GI H
Sbjct: 53 LCVVQMASPDEAVVVDALAEG-IDLKPFFDLMSNERVLKVFHAARQDIEIVWHQAGIIPH 111
Query: 127 NVVDTQIA 134
+ DTQ+A
Sbjct: 112 PIFDTQVA 119
>gi|218192123|gb|EEC74550.1| hypothetical protein OsI_10088 [Oryza sativa Indica Group]
Length = 599
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 27/161 (16%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + K + KV+H RD L F I
Sbjct: 179 QGLTCLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHI 238
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ + S LL +CG++ YQ +
Sbjct: 239 YVCNLFDTGQASRVLQMERN---------SLEHLLR--HFCGVTANKEYQNAD------- 280
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL++ M++ A +D +L Y+Y M +L ++S
Sbjct: 281 -----WRSRPLSDEMIKYAREDTHYLLYMYDLMRLRLQKES 316
>gi|269967938|ref|ZP_06181978.1| ribonuclease D [Vibrio alginolyticus 40B]
gi|269827461|gb|EEZ81755.1| ribonuclease D [Vibrio alginolyticus 40B]
Length = 388
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFASL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G+ + E R D W RPLT+ + AA DV +L +Y + K+
Sbjct: 138 VEE--YLGVELDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLFDKVT 187
Query: 218 QQSLW 222
Q W
Sbjct: 188 QAGWW 192
>gi|334188034|ref|NP_198440.2| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
gi|160892401|gb|ABX52080.1| RRP6-like protein 2 [Arabidopsis thaliana]
gi|332006642|gb|AED94025.1| exosome complex exonuclease RRP6 [Arabidopsis thaliana]
Length = 870
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD + + + + KV+H RD L FGI
Sbjct: 295 QGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGI 354
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQD 181
+ N+ DT A ++ +R+ +++ F G+ A+ Y
Sbjct: 355 YVCNLFDTGQASRVL----NLERNSLEFLLQHFCGVTANKEYQNAD-------------- 396
Query: 182 PQFWTYRPLTELMVRAAADDVRFLPYIY 209
W RPL E M R A +D +L YIY
Sbjct: 397 ---WRIRPLPEEMTRYAREDTHYLLYIY 421
>gi|451975380|ref|ZP_21926571.1| ribonuclease D [Vibrio alginolyticus E0666]
gi|451930692|gb|EMD78395.1| ribonuclease D [Vibrio alginolyticus E0666]
Length = 388
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFASL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G+ + E R D W RPLT+ + AA DV +L +Y + K+
Sbjct: 138 VEE--YLGVELDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLFDKVT 187
Query: 218 QQSLW 222
Q W
Sbjct: 188 QAGWW 192
>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa]
gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa]
Length = 858
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 28/157 (17%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ V + + KV+H RD L FGI
Sbjct: 268 QGLTCLMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDVVWLQRDFGI 327
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS----YQEKEEVRVLLR 179
+ N+ DT A +++ + S LL +CG++ YQ +
Sbjct: 328 YICNLFDTGQASRVLKLERN---------SLEHLLH--HFCGVTANKEYQNAD------- 369
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL + M+R A +D +L +IY ++M+ L
Sbjct: 370 -----WRLRPLPDEMIRYAREDTHYLLHIY-DLMRAL 400
>gi|126328720|ref|XP_001364275.1| PREDICTED: exosome component 10 isoform 2 [Monodelphis domestica]
Length = 836
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
GVDL H G C+MQ++ +++D ++ + + I KV H
Sbjct: 287 GVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDLY-ILNESFTDPSIVKVFHGAD 345
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A ++ GR S D + YC + ++
Sbjct: 346 MDIEWLQKDFGLYVVNMFDTHQAARILNL--GR-HSLDHLLKL--------YCNVESNKQ 394
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M A D +L YIY M L
Sbjct: 395 YQLAD--------WRIRPLPEEMFNYARHDTHYLLYIYDKMRSDL 431
>gi|86136835|ref|ZP_01055413.1| exonuclease, putative [Roseobacter sp. MED193]
gi|85826159|gb|EAQ46356.1| exonuclease, putative [Roseobacter sp. MED193]
Length = 204
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 22/178 (12%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ DCE + L H LC++QL+ D + + G+T LE K+ H
Sbjct: 19 VVAIDCETMGLNPHRDRLCVIQLSDGDGNAHIVQVAKGQTEAPNLCAMLEDPETLKLFHF 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D A+Y FG V T+IA L+ R G+
Sbjct: 79 GRFDIAAMYHAFGALTAPVYCTKIASRLVRTYTDRH-------------------GLKNL 119
Query: 170 EKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+E + V + + Q W + LTE + AA DV +L + + K+L ++ +A
Sbjct: 120 TQELIGVDISKQQQMSDWGAKVLTEAQLDYAASDVLYLHRLREALNKRLEREGRMEMA 177
>gi|126328718|ref|XP_001364197.1| PREDICTED: exosome component 10 isoform 1 [Monodelphis domestica]
Length = 861
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
GVDL H G C+MQ++ +++D ++ + + I KV H
Sbjct: 287 GVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDLY-ILNESFTDPSIVKVFHGAD 345
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A ++ GR S D + YC + ++
Sbjct: 346 MDIEWLQKDFGLYVVNMFDTHQAARIL--NLGR-HSLDHLLKL--------YCNVESNKQ 394
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M A D +L YIY M L
Sbjct: 395 YQLAD--------WRIRPLPEEMFNYARHDTHYLLYIYDKMRSDL 431
>gi|421849279|ref|ZP_16282261.1| ribonuclease D [Acetobacter pasteurianus NBRC 101655]
gi|371459917|dbj|GAB27464.1| ribonuclease D [Acetobacter pasteurianus NBRC 101655]
Length = 402
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 27/157 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+ + + L+DA+ G + K + + KV H ++D E F
Sbjct: 50 LCLVQIGATNDVVLIDALADGIDLTP-LKNLFADTAVLKVFHAARQDLEIFLHLFDALPT 108
Query: 127 NVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ DTQ+A + +Q G Y S VG L ++ + +F
Sbjct: 109 PLFDTQVAAMVAGFGDQVG-------YDSLVGSLTGH---------------MIDKSHRF 146
Query: 185 --WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W+ RPL+ + AA DV +L +Y ++KKL Q+
Sbjct: 147 TDWSVRPLSPAQLTYAAGDVTWLRLVYERLVKKLEQE 183
>gi|345327688|ref|XP_003431189.1| PREDICTED: exosome component 10 [Ornithorhynchus anatinus]
Length = 864
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 34/199 (17%)
Query: 20 KPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLA 73
+P++ P H++T L E E ++ VDL H G C+MQ++
Sbjct: 254 RPVEKT-PFHLITTVDDL-VELNEK------LLNLKEFAVDLEHHSYRSFLGLTCLMQIS 305
Query: 74 FPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
+++D ++ + + + I KV H D E L FG+ + N+ DT
Sbjct: 306 TRTEDFIIDTLEL-RSELYILNESFTDPSIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQ 364
Query: 134 AYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTEL 193
A L+ R DY+ YC + ++ ++ W RPL
Sbjct: 365 AARLL----NLGRHSLDYLL-------KHYCNVEADKQYQLAD--------WRIRPLPRE 405
Query: 194 MVRAAADDVRFLPYIYHNM 212
M+ A DD +L ++Y M
Sbjct: 406 MLNYARDDTHYLLFVYDKM 424
>gi|452978276|gb|EME78040.1| hypothetical protein MYCFIDRAFT_107101, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 799
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 20/170 (11%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D+ + G + +MQ++ D ++VD ++ ++ I KV+H
Sbjct: 251 IAIDLEHHDIRTYIGIVSLMQISTRDKDWIVDTLKPWRRKLQCLNEVFADPNILKVLHGA 310
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D L G+ L + DT A + G S LL R+ G+ Q+
Sbjct: 311 YMDIIWLQRDLGLYLVGLFDTHHAARALGYPAG---------SLAYLLK--RFAGVDAQK 359
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
K + W RPL + + A D +L YI+ N+ +L Q+S
Sbjct: 360 KYQT--------ADWRVRPLPQALFDYARSDTHYLLYIFDNLRNELIQRS 401
>gi|421853080|ref|ZP_16285760.1| ribonuclease D [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371478657|dbj|GAB30963.1| ribonuclease D [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 402
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 27/157 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+ + + L+DA+ G + K + + KV H ++D E F
Sbjct: 50 LCLVQIGATNDVVLIDALADGIDLTP-LKNLFADTAVLKVFHAARQDLEIFLHLFDALPT 108
Query: 127 NVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ DTQ+A + +Q G Y S VG L ++ + +F
Sbjct: 109 PLFDTQVAAMVAGFGDQVG-------YDSLVGSLTGH---------------MIDKSHRF 146
Query: 185 --WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W+ RPL+ + AA DV +L +Y ++KKL Q+
Sbjct: 147 TDWSVRPLSPAQLTYAAGDVTWLRLVYERLVKKLEQE 183
>gi|40063706|gb|AAR38487.1| ribonuclease D, putative [uncultured marine bacterium 583]
Length = 341
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 35/183 (19%)
Query: 30 IVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGET 89
++ SQL +S+ +L I + + ++ + LC++Q+A ++ +D +
Sbjct: 1 MIQTTSQLERYLKTINSDSRLAIDTEFKRIN-TYYPQLCLVQIATTHSLECIDVLS---- 55
Query: 90 VVKACKPALESSYITK---VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKR 146
+ +P E Y +K ++H ++D EA Y ++ DTQIA SL+
Sbjct: 56 -INDLEPLFEKLYRSKTEWIVHSARQDIEAFYHLSKRIPVSLFDTQIAASLLNYP----- 109
Query: 147 SPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF----WTYRPLTELMVRAAADDV 202
ISYQ EV ++ D F WT RPL +V A DDV
Sbjct: 110 -----------------LQISYQLITEVLQDIQLDKSFTRFDWTTRPLPADVVEYALDDV 152
Query: 203 RFL 205
R+L
Sbjct: 153 RYL 155
>gi|297826687|ref|XP_002881226.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
lyrata]
gi|297327065|gb|EFH57485.1| hypothetical protein ARALYDRAFT_320982 [Arabidopsis lyrata subsp.
lyrata]
Length = 891
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G ++Q++ + +LVD I + + +P I KV H D L F I
Sbjct: 154 GFTALIQISTHEKDFLVDTIVLHD-AMSILRPVFSEPNICKVFHGADNDVLWLQRDFHIY 212
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A ++ + + S LL CG++ ++L R+D
Sbjct: 213 VVNMFDTAKACEVLSKPQR---------SLAYLL--ETVCGVATN-----KLLQRED--- 253
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL+E MVR A D +L YI ++ +L Q
Sbjct: 254 WRQRPLSEEMVRYARTDAHYLLYIADSLTAELKQ 287
>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
lyrata]
gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp.
lyrata]
Length = 867
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 19/155 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ Y+VD + + + + K++H RD L FGI
Sbjct: 291 QGLTCLMQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKIMHGADRDIIWLQRDFGI 350
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A ++ GR F G+ A+ Y
Sbjct: 351 YVCNLFDTGQASRVL--NLGRNSLEFLLQHFCGVTANKEYQNAD---------------- 392
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W RPL E M R A +D +L YIY M +L +
Sbjct: 393 -WRIRPLPEEMTRYAREDTHYLLYIYDVMRLELER 426
>gi|327291874|ref|XP_003230645.1| PREDICTED: exosome component 10-like, partial [Anolis carolinensis]
Length = 329
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 20 KPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQLA 73
+P+ S P H ++ +L +E S + + F +DL H G C++Q++
Sbjct: 65 RPV-SETPCHFISTLDEL----VELSEKLRTCKEF---ALDLEHHSYRSFLGLTCLVQIS 116
Query: 74 FPDAIYLVDAIQ-GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQ 132
+++DA++ G+ V I KV+H D E L FG+ L NV DT
Sbjct: 117 TRTEDFILDALELRGDLYV--LNETFTDPAIIKVLHGADSDVEWLQRDFGLYLVNVFDTH 174
Query: 133 IAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTE 192
A Q R D++ + YC + ++ ++ W RPL E
Sbjct: 175 QA----ARQLSLGRHSLDHLLKL-------YCNVDANKQYQLAD--------WRIRPLPE 215
Query: 193 LMVRAAADDVRFLPYIYHNMMKKL 216
M+ A DD +L YIY + +L
Sbjct: 216 EMLNYARDDTHYLLYIYDRVRTEL 239
>gi|341614946|ref|ZP_08701815.1| ribonuclease D [Citromicrobium sp. JLT1363]
Length = 392
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 28/180 (15%)
Query: 54 FDCEGVDLCRHGS----LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
F C + R + LC++Q+ + +D + G + E+ + KV H
Sbjct: 25 FVCVDTEFMRENTYWPELCLVQIGDENEAAAIDPLADGIDLKPLLDLLCENEDVLKVFHA 84
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+D E + G H + DTQIA I + E I + L+ S+
Sbjct: 85 GSQDVEIFFNLTGKTPHPIFDTQIAMMAISQSE--------QIGYANLVE-------SWL 129
Query: 170 EKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLWYLA 225
+K + + +F W+ RPLT+ + A DV +L I+ ++KKL ++ W A
Sbjct: 130 DK-----TIDKGARFTDWSRRPLTDRQLEYAIGDVTYLAKIFPKILKKLMKTERGAWLNA 184
>gi|254234416|ref|ZP_04927739.1| ribonuclease D [Pseudomonas aeruginosa C3719]
gi|126166347|gb|EAZ51858.1| ribonuclease D [Pseudomonas aeruginosa C3719]
Length = 374
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 73 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 115
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 116 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 172
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 173 LSEEKRAWLLEDGAELVANLC-RESD 197
>gi|116075800|ref|ZP_01473059.1| putative ribonuclease D [Synechococcus sp. RS9916]
gi|116067115|gb|EAU72870.1| putative ribonuclease D [Synechococcus sp. RS9916]
Length = 214
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 72/182 (39%), Gaps = 19/182 (10%)
Query: 48 RQLVIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
R + D E + L HG LC++Q+ PD I G+T + +ES + K
Sbjct: 28 RAKALAVDTEAMGLI-HGRDRLCLVQICDPDDHVACVRIGLGQTEAPRLEALMESKAVEK 86
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H + D AL GI ++ + T++A L R D + VG+ D +
Sbjct: 87 VFHFARFDVAALASGLGIAVNPIFCTKVASRLARTYTPRHGLKDLVMELVGVELDKQAQS 146
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ +E LTE + AA+D R+L + L ++ W LA
Sbjct: 147 SDWGRVDE----------------LTEAQLAYAANDARYLLPARDRLELMLRREGRWELA 190
Query: 226 VR 227
R
Sbjct: 191 ER 192
>gi|15837353|ref|NP_298041.1| ribonuclease D [Xylella fastidiosa 9a5c]
gi|9105641|gb|AAF83561.1|AE003916_15 ribonuclease D [Xylella fastidiosa 9a5c]
Length = 362
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 21/170 (12%)
Query: 52 IGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
IG D E + + L ++Q+A D I LVD + G T A L + + K++H
Sbjct: 22 IGMDTEFIRERTFWPELALVQIAIEDEILLVDPLVPGMT--DALGLWLAAPNVIKIMHSA 79
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D A + G+ + DTQI +L G + + L+A + E
Sbjct: 80 SEDLIAFKYACGVLPRPLFDTQIGAALTGLGGG--------MGYQKLVATVTNVAL---E 128
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
K E R W +RPLT + AA+DVR+L ++ + ++L + S
Sbjct: 129 KGETR-------SDWMHRPLTPAQLDYAANDVRYLFALHDTLTERLAEMS 171
>gi|403360645|gb|EJY80003.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 701
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 28 IHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGG 87
I +V N + L + ++Q +G D EG L G++ ++Q+A + IY+ D Q
Sbjct: 447 ILVVNNYASLTMSL--RTMKKQKSLGVDLEG-RLKIGGNINLIQIACEEIIYIFDMYQIQ 503
Query: 88 ---------ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQ----IA 134
+ ++ K S I KV D K+D EAL+F G+ +N DTQ +
Sbjct: 504 KLSQDEGLLQLTIQVLKCVFLDSGIRKVFFDGKKDVEALHFILGVGCNNYYDTQALHMVL 563
Query: 135 YSLIEEQEGRK 145
L E Q+ +K
Sbjct: 564 TQLKEMQKNKK 574
>gi|414164492|ref|ZP_11420739.1| hypothetical protein HMPREF9697_02640 [Afipia felis ATCC 53690]
gi|410882272|gb|EKS30112.1| hypothetical protein HMPREF9697_02640 [Afipia felis ATCC 53690]
Length = 204
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 70/185 (37%), Gaps = 24/185 (12%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+ D E + L H LC++QL+ D V I G T K L ITK+ H
Sbjct: 20 VAIDTETLGLNPHRDRLCVVQLSNGDGSADVVQIPAGHTDAPNLKKLLGDPAITKLFHFA 79
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D LY FG+ V T+IA L+ R D +G
Sbjct: 80 RFDIAVLYHAFGVMAQPVYCTKIASKLVRTYTDRHGLKDLVREMLG-------------- 125
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGAL 230
V + +Q W L+E + AA DV L H + +KL+ ++ R AL
Sbjct: 126 ---VEISKQQQSSDWGAASLSEAQLSYAASDVLHL----HALREKLD--AMLARENRSAL 176
Query: 231 YCRCF 235
CF
Sbjct: 177 AKACF 181
>gi|153840116|ref|ZP_01992783.1| ribonuclease D, partial [Vibrio parahaemolyticus AQ3810]
gi|149746274|gb|EDM57352.1| ribonuclease D [Vibrio parahaemolyticus AQ3810]
Length = 341
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G++ + E R D W RPLT+ + AA DV +L +Y ++ K+
Sbjct: 138 VEE--YLGVALDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 218 QQSLW 222
+ W
Sbjct: 188 EAGWW 192
>gi|348690893|gb|EGZ30707.1| hypothetical protein PHYSODRAFT_553621 [Phytophthora sojae]
Length = 1507
Score = 44.7 bits (104), Expect = 0.059, Method: Composition-based stats.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 34/171 (19%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVD--AIQGGETVVKA--CKPALESSYITKVI 107
VDL H G C+MQ++ +LVD A++G + C PA KV+
Sbjct: 272 AVDLEHHSYRSYMGLTCLMQISTAREDFLVDTLALRGKLQTLNQVFCDPAK-----VKVL 326
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
H D L G+ + N+ DT A L++ Y F R+C I
Sbjct: 327 HGSDMDILWLQRDLGLYIVNLFDTGRAARLLQ-----------YPRFSLAYMLKRHCNID 375
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
++ ++ W RPL + MV+ A +D R+L +IY + K+L Q
Sbjct: 376 ADKQYQL--------ADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKELLQ 418
>gi|417767687|ref|ZP_12415623.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
gi|400349705|gb|EJP01993.1| 3'-5' exonuclease [Leptospira interrogans serovar Bulgarica str.
Mallika]
Length = 388
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ +++ E I K+ H
Sbjct: 29 ISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LESLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG + N+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + + AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQFQYAALDTVYLETIWEKMKEELIKRNLYEEAI 183
>gi|380513496|ref|ZP_09856903.1| ribonuclease D [Xanthomonas sacchari NCPPB 4393]
Length = 361
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 75/181 (41%), Gaps = 21/181 (11%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE E ++R IG D E V + L ++Q+A D I L+D + G + +A P
Sbjct: 8 PAELSERLAQRPARIGLDTEFVRERTYWPQLALVQMAVGDEILLIDPLIPG--MPQALAP 65
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
L I K++H D A G + DTQIA L + +
Sbjct: 66 WLSDPGILKIMHSASEDLVAFKCACGTLPRPLFDTQIAAGLAGLGA--------GMGYQK 117
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
L+ + G+ + E R D W RPL+ + AADDVR L ++ + +L
Sbjct: 118 LVLE--ITGVHLAKGET-----RSD---WLRRPLSPAQLEYAADDVRHLFALHDALQARL 167
Query: 217 N 217
Sbjct: 168 Q 168
>gi|427724275|ref|YP_007071552.1| 3'-5' exonuclease [Leptolyngbya sp. PCC 7376]
gi|427355995|gb|AFY38718.1| 3'-5' exonuclease [Leptolyngbya sp. PCC 7376]
Length = 208
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 19/176 (10%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + L H LC++QL D I G+T K +E+ ITKV H
Sbjct: 24 AIAVDTETMGLNPHRDRLCLVQLCDDDGYVSAVRISRGQTEAPNLKTLMEAENITKVFHF 83
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR-YCGISY 168
+ D L FGI+ + + T+IA L Y S GL + + GI
Sbjct: 84 GRFDIAQLRHTFGIETNPIFCTKIASKLART----------YTSSHGLKSLVKELMGIEL 133
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYL 224
+ Q + L+ + A++DVR+L + H ++ L ++ W+L
Sbjct: 134 DKSA-------QSSDWGNVAALSAEQLSYASNDVRYLIPMMHKLIDMLKREDRWHL 182
>gi|260895639|ref|ZP_05904135.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
gi|308088174|gb|EFO37869.1| ribonuclease D [Vibrio parahaemolyticus Peru-466]
Length = 325
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G++ + E R D W RPLT+ + AA DV +L +Y ++ K+
Sbjct: 138 VEE--YLGVALDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 218 QQSLW 222
+ W
Sbjct: 188 EAGWW 192
>gi|392397230|ref|YP_006433831.1| ribonuclease D [Flexibacter litoralis DSM 6794]
gi|390528308|gb|AFM04038.1| ribonuclease D [Flexibacter litoralis DSM 6794]
Length = 449
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 27/200 (13%)
Query: 27 PIHIVTNASQLPAEFLEPSSERQLVIG--FDCEGVDLCRHGSLCIMQLAFPDAIYLVDAI 84
PI+I T +L L+ + Q+ I FD RH LC++Q+ D IYL+D +
Sbjct: 54 PIYIKT-FEELEKAALKWNKCNQIAIDTEFDDNNNYYGRH--LCLVQIYDKDKIYLIDTV 110
Query: 85 QGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
+ E + LE+ + K+ H C D + + N+ DT + Y
Sbjct: 111 KL-EGNINPLLAVLENPNVEKIFHSCSSDLIVVGDVCNCAIKNIQDTALMYRF------- 162
Query: 145 KRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDV 202
LL G+ +E++ + L + Q W RPL++ + AA DV
Sbjct: 163 ------------LLKSHNDIGLQSLVEEKLNIELEKQEQVSDWAKRPLSKSQLIYAATDV 210
Query: 203 RFLPYIYHNMMKKLNQQSLW 222
+L ++ + K+L + W
Sbjct: 211 IYLFELFEILKKELQELERW 230
>gi|399545204|ref|YP_006558512.1| ribonuclease D [Marinobacter sp. BSs20148]
gi|399160536|gb|AFP31099.1| Ribonuclease D [Marinobacter sp. BSs20148]
Length = 382
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 69 IMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128
++QL D LVD + + ALE S K+++ D E GI + V
Sbjct: 57 LVQLGLADQFRLVDPEVAEASA--GFRAALEDSQRLKLLYAVSEDLELFRHWLGIPMQGV 114
Query: 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGI--SYQEKEEVRVLLRQDPQFWT 186
+D Q+ ++F GL Y + S + + L R + W
Sbjct: 115 IDLQLG-----------------VAFAGLGFSMGYAKLVESLFGESLDKTLTRSN---WI 154
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
RPL++L R A DDVRFL +Y + L + L
Sbjct: 155 SRPLSDLQQRYAIDDVRFLKPVYDWLQDVLAGRGL 189
>gi|398340441|ref|ZP_10525144.1| ribonuclease III [Leptospira kirschneri serovar Bim str. 1051]
gi|418693755|ref|ZP_13254804.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|421106132|ref|ZP_15566708.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
gi|409958332|gb|EKO17224.1| 3'-5' exonuclease [Leptospira kirschneri str. H1]
gi|410008854|gb|EKO62514.1| 3'-5' exonuclease [Leptospira kirschneri str. H2]
Length = 388
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ +++ E I K+ H
Sbjct: 29 ISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LESLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG + N+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWAKMKEELIKRNLYEEAI 183
>gi|218710187|ref|YP_002417808.1| Ribonuclease D [Vibrio splendidus LGP32]
gi|218323206|emb|CAV19383.1| Ribonuclease D [Vibrio splendidus LGP32]
Length = 397
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 21/176 (11%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + L ++QL + + L+D I E + L+ + + KV+H
Sbjct: 49 VVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIALDE--MTPFVGLLKDTSVLKVLHA 106
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E FG +VDTQI + + G S F L+++ + G+
Sbjct: 107 CGEDLEVFQNAFGCTPTPMVDTQIMAAFL----GHGLS----TGFAALVSE--FVGVDLD 156
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ E R D W RPL++ + AA DV +L +Y+ +++K+ + W A
Sbjct: 157 KSES-----RTD---WLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAA 204
>gi|118395219|ref|XP_001029962.1| 3'-5' exonuclease family protein [Tetrahymena thermophila]
gi|89284244|gb|EAR82299.1| 3'-5' exonuclease family protein [Tetrahymena thermophila SB210]
Length = 1087
Score = 44.7 bits (104), Expect = 0.064, Method: Composition-based stats.
Identities = 49/226 (21%), Positives = 84/226 (37%), Gaps = 34/226 (15%)
Query: 27 PIHIVTNASQLPAEFLE----------PSSERQLVIGFDCEGVDLCRHGSL---CIMQLA 73
P+HI + LP+ F++ P + +IG D E + L C +QL+
Sbjct: 862 PLHIKNKMNSLPSIFVDKEEQLIEKVIPDLLQHQIIGIDLEYWTDNKDQKLSFICTLQLS 921
Query: 74 FPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
+ +++D + ++V K ES KV H + D + L L N+ DT
Sbjct: 922 TLSSNFVIDILNLSKSVSVHLKSIFESPKFVKVFHGGETDLKLLKKDLNFNLVNIFDTAK 981
Query: 134 AYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTEL 193
AY + G ++ D + YQ + W RPL +
Sbjct: 982 AYLKQNKGAGSVSLSSLSQQYLNYNVDKQ-----YQTSD------------WRIRPLPKP 1024
Query: 194 MVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINE 239
M+ A D ++ M ++Q+ L +A+ C CI +
Sbjct: 1025 MLNYAMYDSFITLILFFVMKSTISQEDLSIIAIS----CNKMCIKQ 1066
>gi|418679035|ref|ZP_13240300.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|418685440|ref|ZP_13246616.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|418740873|ref|ZP_13297249.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421089663|ref|ZP_15550467.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|421131604|ref|ZP_15591784.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|400320450|gb|EJO68319.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
RM52]
gi|410001487|gb|EKO52083.1| 3'-5' exonuclease [Leptospira kirschneri str. 200802841]
gi|410356978|gb|EKP04263.1| 3'-5' exonuclease [Leptospira kirschneri str. 2008720114]
gi|410740048|gb|EKQ84770.1| 3'-5' exonuclease [Leptospira kirschneri serovar Grippotyphosa str.
Moskva]
gi|410751468|gb|EKR08445.1| 3'-5' exonuclease [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 388
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ +++ E I K+ H
Sbjct: 29 ISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LESLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG + N+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWAKMKEELIKRNLYEEAI 183
>gi|15596491|ref|NP_249985.1| ribonuclease D [Pseudomonas aeruginosa PAO1]
gi|9947230|gb|AAG04683.1|AE004559_2 ribonuclease D [Pseudomonas aeruginosa PAO1]
Length = 374
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 73 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 115
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 116 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDTR 172
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 173 LSEEKRAWLLEDGAELVANLC-RESD 197
>gi|313106280|ref|ZP_07792525.1| ribonuclease D [Pseudomonas aeruginosa 39016]
gi|355645431|ref|ZP_09054144.1| ribonuclease D [Pseudomonas sp. 2_1_26]
gi|386065119|ref|YP_005980423.1| ribonuclease D [Pseudomonas aeruginosa NCGM2.S1]
gi|421155212|ref|ZP_15614693.1| ribonuclease D [Pseudomonas aeruginosa ATCC 14886]
gi|421169151|ref|ZP_15627193.1| ribonuclease D [Pseudomonas aeruginosa ATCC 700888]
gi|310879027|gb|EFQ37621.1| ribonuclease D [Pseudomonas aeruginosa 39016]
gi|348033678|dbj|BAK89038.1| ribonuclease D [Pseudomonas aeruginosa NCGM2.S1]
gi|354828894|gb|EHF12994.1| ribonuclease D [Pseudomonas sp. 2_1_26]
gi|404520842|gb|EKA31492.1| ribonuclease D [Pseudomonas aeruginosa ATCC 14886]
gi|404527609|gb|EKA37756.1| ribonuclease D [Pseudomonas aeruginosa ATCC 700888]
Length = 374
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 73 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 115
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 116 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 172
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 173 LSEEKRAWLLEDGAELVANLC-RESD 197
>gi|416856557|ref|ZP_11912131.1| ribonuclease D [Pseudomonas aeruginosa 138244]
gi|420140701|ref|ZP_14648441.1| ribonuclease D [Pseudomonas aeruginosa CIG1]
gi|421161990|ref|ZP_15620882.1| ribonuclease D [Pseudomonas aeruginosa ATCC 25324]
gi|424940506|ref|ZP_18356269.1| ribonuclease D [Pseudomonas aeruginosa NCMG1179]
gi|451988440|ref|ZP_21936569.1| Ribonuclease D [Pseudomonas aeruginosa 18A]
gi|334841819|gb|EGM20440.1| ribonuclease D [Pseudomonas aeruginosa 138244]
gi|346056952|dbj|GAA16835.1| ribonuclease D [Pseudomonas aeruginosa NCMG1179]
gi|403246543|gb|EJY60259.1| ribonuclease D [Pseudomonas aeruginosa CIG1]
gi|404537329|gb|EKA46933.1| ribonuclease D [Pseudomonas aeruginosa ATCC 25324]
gi|451753938|emb|CCQ89092.1| Ribonuclease D [Pseudomonas aeruginosa 18A]
Length = 374
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 73 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 115
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 116 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 172
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 173 LSEEKRAWLLEDGAELVANLC-RESD 197
>gi|154508933|ref|ZP_02044575.1| hypothetical protein ACTODO_01449 [Actinomyces odontolyticus ATCC
17982]
gi|153798567|gb|EDN80987.1| putative ribonuclease D [Actinomyces odontolyticus ATCC 17982]
Length = 414
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 27/176 (15%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPD-AIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E R+GS ++Q+ D +L+D + V +P +E ++ +HD
Sbjct: 51 IALDVERAQGFRYGSDPYLVQIRREDVGTFLIDTHALPDLSV--LQPGVEDVWL---LHD 105
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C +D L Q G++ + DT+IA LI + + + + +GL+ D +Q
Sbjct: 106 CLQDLPNLR-QVGLRPSTLFDTEIAARLIGLERFGLAAVVEQVLGLGLVKD-------HQ 157
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ W+ RPL + +R AA DV L +Y+ + K+L++ W A
Sbjct: 158 ASD------------WSVRPLPKEWLRYAALDVELLTELYYRLSKRLDEMGRWEWA 201
>gi|116049246|ref|YP_791951.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
gi|296390324|ref|ZP_06879799.1| ribonuclease D [Pseudomonas aeruginosa PAb1]
gi|416873541|ref|ZP_11917580.1| ribonuclease D [Pseudomonas aeruginosa 152504]
gi|421175630|ref|ZP_15633306.1| ribonuclease D [Pseudomonas aeruginosa CI27]
gi|115584467|gb|ABJ10482.1| ribonuclease D [Pseudomonas aeruginosa UCBPP-PA14]
gi|334844716|gb|EGM23287.1| ribonuclease D [Pseudomonas aeruginosa 152504]
gi|404532027|gb|EKA41953.1| ribonuclease D [Pseudomonas aeruginosa CI27]
Length = 374
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 73 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 115
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 116 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 172
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 173 LSEEKRAWLLEDGAELVANLC-RESD 197
>gi|396585245|ref|ZP_10485670.1| 3'-5' exonuclease [Actinomyces sp. ICM47]
gi|395546974|gb|EJG14494.1| 3'-5' exonuclease [Actinomyces sp. ICM47]
Length = 414
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 27/176 (15%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPD-AIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E R+GS ++Q+ D +L+D + V +P +E ++ +HD
Sbjct: 51 IALDVERAQGFRYGSDPYLVQIRREDVGSFLIDTHALPDLSV--LQPGVEDVWL---LHD 105
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C +D L Q G++ + DT+IA L+ + + + + +GL+ D +Q
Sbjct: 106 CLQDLPNLR-QVGLRPSALFDTEIAARLVGLERFGLAAVAEQVLGLGLVKD-------HQ 157
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ W+ RPL + +R AA DV L +Y+ + K+L+Q W A
Sbjct: 158 ASD------------WSVRPLPKEWLRYAALDVELLTELYYRLSKRLDQMGRWEWA 201
>gi|159469482|ref|XP_001692892.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277694|gb|EDP03461.1| predicted protein [Chlamydomonas reinhardtii]
Length = 163
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 25/128 (19%)
Query: 44 PSSERQL-------VIGFDCEGVDLCRHGSLCIMQLAFPDAI---------YLVDAIQGG 87
P+ ER L + D EGV L R G LC++ L + YLVD
Sbjct: 8 PALERMLGALVGVEWLAVDAEGVSLSRDGKLCLLALQPARLLVRTWQWLPGYLVDVSVLS 67
Query: 88 ETVVKAC-------KPALESSYITKVIHDCKRDSEALYFQFGIK--LHNVVDTQIAYSLI 138
C K LE +TK++ D +RD+EALY Q G + V T++ + +
Sbjct: 68 TEAFSHCRRRDCSLKTLLECGDVTKLLFDVRRDAEALYHQHGAREWERAVERTRVWEAAV 127
Query: 139 EEQEGRKR 146
E R+R
Sbjct: 128 EYGGARRR 135
>gi|107100745|ref|ZP_01364663.1| hypothetical protein PaerPA_01001773 [Pseudomonas aeruginosa PACS2]
gi|421515925|ref|ZP_15962611.1| ribonuclease D [Pseudomonas aeruginosa PAO579]
gi|404349653|gb|EJZ75990.1| ribonuclease D [Pseudomonas aeruginosa PAO579]
Length = 380
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 79 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 122 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDTR 178
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 179 LSEEKRAWLLEDGAELVANLC-RESD 203
>gi|260366009|ref|ZP_05778494.1| ribonuclease D [Vibrio parahaemolyticus K5030]
gi|308111259|gb|EFO48799.1| ribonuclease D [Vibrio parahaemolyticus K5030]
Length = 292
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G++ + E R D W RPLT+ + AA DV +L +Y ++ K+
Sbjct: 138 VEE--YLGVALDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 218 QQSLW 222
+ W
Sbjct: 188 EAGWW 192
>gi|218892602|ref|YP_002441471.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
gi|254239667|ref|ZP_04932989.1| ribonuclease D [Pseudomonas aeruginosa 2192]
gi|386059670|ref|YP_005976192.1| ribonuclease D [Pseudomonas aeruginosa M18]
gi|421181719|ref|ZP_15639210.1| ribonuclease D [Pseudomonas aeruginosa E2]
gi|126193045|gb|EAZ57108.1| ribonuclease D [Pseudomonas aeruginosa 2192]
gi|218772830|emb|CAW28624.1| ribonuclease D [Pseudomonas aeruginosa LESB58]
gi|347305976|gb|AEO76090.1| ribonuclease D [Pseudomonas aeruginosa M18]
gi|404543287|gb|EKA52574.1| ribonuclease D [Pseudomonas aeruginosa E2]
Length = 374
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 73 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 115
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 116 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 172
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 173 LSEEKRAWLLEDGAELVANLC-RESD 197
>gi|433676711|ref|ZP_20508790.1| ribonuclease D [Xanthomonas translucens pv. translucens DSM 18974]
gi|430818169|emb|CCP39107.1| ribonuclease D [Xanthomonas translucens pv. translucens DSM 18974]
Length = 361
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 73/181 (40%), Gaps = 21/181 (11%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE E ++R IG D E V + L ++Q+A D I L+D + G + +A P
Sbjct: 8 PAELAERLAQRPARIGLDTEFVRERTYWPQLALVQMAVADEILLIDPLIPG--MPQALAP 65
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
L I KV+H D A G + DTQI L G Y V
Sbjct: 66 WLSDPAILKVMHSASEDLVAFKCACGALPRPLFDTQIGAGLAGIGAGMG-----YQKLVQ 120
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
G+ + E R D W RPL+ + AADDVR L I+ + ++L
Sbjct: 121 -----EITGVHLAKGET-----RSD---WLRRPLSPAQLDYAADDVRHLFAIHDALQERL 167
Query: 217 N 217
Sbjct: 168 Q 168
>gi|260901199|ref|ZP_05909594.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
gi|308106837|gb|EFO44377.1| ribonuclease D [Vibrio parahaemolyticus AQ4037]
Length = 354
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G++ + E R D W RPLT+ + AA DV +L +Y ++ K+
Sbjct: 138 VEE--YLGVALDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 218 QQSLW 222
+ W
Sbjct: 188 EAGWW 192
>gi|260878202|ref|ZP_05890557.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
gi|308090210|gb|EFO39905.1| ribonuclease D [Vibrio parahaemolyticus AN-5034]
Length = 372
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLS----TGFATL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G++ + E R D W RPLT+ + AA DV +L +Y ++ K+
Sbjct: 138 VEE--YLGVALDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 218 QQSLW 222
+ W
Sbjct: 188 EAGWW 192
>gi|440733927|ref|ZP_20913568.1| ribonuclease D [Xanthomonas translucens DAR61454]
gi|440358018|gb|ELP95461.1| ribonuclease D [Xanthomonas translucens DAR61454]
Length = 361
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 73/181 (40%), Gaps = 21/181 (11%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE E ++R IG D E V + L ++Q+A D I L+D + G + +A P
Sbjct: 8 PAELAERLAQRPARIGLDTEFVRERTYWPQLALVQMAVADEILLIDPLIPG--MPQALAP 65
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
L I KV+H D A G + DTQI L G Y V
Sbjct: 66 WLSDPAILKVMHSASEDLVAFKCACGALPRPLFDTQIGAGLAGIGAGMG-----YQKLVQ 120
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
G+ + E R D W RPL+ + AADDVR L I+ + ++L
Sbjct: 121 -----EITGVHLAKGET-----RSD---WLRRPLSPAQLDYAADDVRHLFAIHDALQERL 167
Query: 217 N 217
Sbjct: 168 Q 168
>gi|42520085|ref|NP_966000.1| ribonuclease D [Wolbachia endosymbiont of Drosophila melanogaster]
gi|42409822|gb|AAS13934.1| ribonuclease D, putative [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 392
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 90/198 (45%), Gaps = 21/198 (10%)
Query: 30 IVTNASQLPAEFLEPSSERQLVIGFDCEGV--DLCRHGSLCIMQLAFPDAIYLVDAIQGG 87
+++ S+L E +++ I D E + +L + L ++Q+++ + ++VDA+
Sbjct: 2 LISTTSELENTCEELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSFIVDAL-VP 60
Query: 88 ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRS 147
E + K + + ITKV H C++D E+L F + DTQ+A
Sbjct: 61 EIDLSFIKKIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYH----- 115
Query: 148 PDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207
D+I + ++ +Y GI+ + ++ W RPL+E + A +DV L
Sbjct: 116 --DFIGYSKVV--EQYQGIALDK-------IKAKNSDWLRRPLSEDQLDYAVNDVVHLYD 164
Query: 208 IYHNMMKKL--NQQSLWY 223
+Y + KL N + W+
Sbjct: 165 LYQILCNKLEENNRMGWF 182
>gi|418583147|ref|ZP_13147217.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P1]
gi|375047367|gb|EHS39913.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P1]
Length = 376
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 75 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 117
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 118 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDTR 174
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 175 LSEEKRAWLLEDGAELVANLC-RESD 199
>gi|328767973|gb|EGF78021.1| hypothetical protein BATDEDRAFT_27210 [Batrachochytrium
dendrobatidis JAM81]
Length = 826
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 34/173 (19%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSY----ITKVI 107
VDL H G C+MQ++ +LVD + +++ AL +S+ I KV
Sbjct: 271 AVDLEHHDFRSYQGFTCLMQISTRTEDFLVDTL-----ILRNSLHALNTSFANPQIVKVF 325
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
H + D + L FG+ + ++ DT A +E EG S LL YC +
Sbjct: 326 HGAEMDIQWLQRDFGVYVVDLFDTYHASHALE-LEGH--------SLAFLLK--YYCDVV 374
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
++ ++ W RPL + MV A D +L YI+ M +L +S
Sbjct: 375 TDKRYQL--------ADWRIRPLPKEMVHYARMDTHYLLYIFDRMRNELLNKS 419
>gi|28897645|ref|NP_797250.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
gi|417320410|ref|ZP_12106956.1| ribonuclease D [Vibrio parahaemolyticus 10329]
gi|28805858|dbj|BAC59134.1| ribonuclease D [Vibrio parahaemolyticus RIMD 2210633]
gi|328473373|gb|EGF44221.1| ribonuclease D [Vibrio parahaemolyticus 10329]
Length = 388
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G++ + E R D W RPLT+ + AA DV +L +Y ++ K+
Sbjct: 138 VEE--YLGVALDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 218 QQSLW 222
+ W
Sbjct: 188 EAGWW 192
>gi|389581646|ref|ZP_10171673.1| ribonuclease D [Desulfobacter postgatei 2ac9]
gi|389403281|gb|EIM65503.1| ribonuclease D [Desulfobacter postgatei 2ac9]
Length = 404
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 25/167 (14%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
+IG D E + C +C++Q+A P+ +L+D + + LE+ I KV H
Sbjct: 52 IIGVDLEADSMHCFSEKICLIQIAGPNQAWLLDPFLINDFL--PFSRILENPEIIKVFHG 109
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYI-SFVGLLADPRYCGISY 168
D +L + +++ N+ DT+IA + +E R + SF + D +Y +
Sbjct: 110 SDFDVRSLDRELSVEIENLFDTEIACRFLNIKE---RGLGALLKSFFDIDVDKKYQKVD- 165
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
W+ RPL E M+ + DV L + H+++K+
Sbjct: 166 ----------------WSKRPLKEEMIAYSVGDVATLVDL-HDLLKE 195
>gi|159184639|ref|NP_354170.2| ribonuclease D [Agrobacterium fabrum str. C58]
gi|159139937|gb|AAK86955.2| ribonuclease D [Agrobacterium fabrum str. C58]
Length = 388
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P LVD + G + + + + + KV H ++D E +Y G+ H
Sbjct: 37 LCLVQMASPTLEVLVDPLAKGIDLTPMFE-LMANPNVVKVFHAARQDIEIIYHLGGLIPH 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D IS+ L+ Q+ + V++ W+
Sbjct: 96 PIFDTQVAAMVC--------GFGDSISYDQLV----------QKIKNVQIDKSSRFTDWS 137
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ--SLW 222
RPLTE + A DV L +Y ++ +L ++ SLW
Sbjct: 138 RRPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLW 175
>gi|338211062|ref|YP_004655113.1| 3'-5' exonuclease [Runella slithyformis DSM 19594]
gi|336304879|gb|AEI47981.1| 3'-5' exonuclease [Runella slithyformis DSM 19594]
Length = 383
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
+LC++Q+A PD YL+D + + + LE KV HDC D L+ G
Sbjct: 42 TLCLIQIAAPDTCYLIDPFSIPD--LTSLWRVLEDERSEKVFHDCGEDLRLLHLH-GCSP 98
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185
N+ DT +A ++ ++ I +L + G+ +K++ W
Sbjct: 99 RNIFDTSVAAKMLSFEK---------IGLSSVLNE--LLGVESSKKKQ--------QSNW 139
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
RPL L + AA DV L + ++L Q+ W
Sbjct: 140 LKRPLLPLQLEYAATDVIHLLALRKVFAERLQAQNRW 176
>gi|260790959|ref|XP_002590508.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
gi|229275702|gb|EEN46519.1| hypothetical protein BRAFLDRAFT_124507 [Branchiostoma floridae]
Length = 832
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 42/208 (20%)
Query: 19 GKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQL 72
KPID+ P+ +VT +L ++ + + + F VDL H G C+MQ+
Sbjct: 265 SKPIDAT-PLTLVTTLEEL----MDMNDKLTMCSEF---AVDLEHHSYRSFQGFTCLMQV 316
Query: 73 AFPDAIYLVDAIQGGETVVKACKPALESSY----ITKVIHDCKRDSEALYFQFGIKLHNV 128
+ D Y+VD + ++A L ++ + KV H D + L FG+ + N+
Sbjct: 317 STRDHDYIVDTL-----ALRADLHVLNDTFTDPKVVKVFHGADMDIQWLQRDFGVYVVNM 371
Query: 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYR 188
DT A ++ G R S LL YC + +K ++ W R
Sbjct: 372 FDTGQASHVL----GLPRH-----SLAYLLK--TYCDVEPDKKYQL--------ADWRIR 412
Query: 189 PLTELMVRAAADDVRFLPYIYHNMMKKL 216
PL M + A +D +L +IY M +L
Sbjct: 413 PLPSEMTQYAREDTHYLLHIYDCMRSEL 440
>gi|387129863|ref|YP_006292753.1| Ribonuclease D [Methylophaga sp. JAM7]
gi|386271152|gb|AFJ02066.1| Ribonuclease D [Methylophaga sp. JAM7]
Length = 383
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 30/158 (18%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSY---ITKVIHDCKRDSEALYFQFG 122
LC++Q+A D I +D + + P + Y +T V H ++D E L
Sbjct: 40 QLCLIQIANDDVIACIDPL-----AIDDLTPLFDVLYQPKMTLVFHAARQDLELLLMHRQ 94
Query: 123 IKLHNVVDTQIAYSLIE--EQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQ 180
+ DTQ+A S++ EQ G Y + V + + +K R
Sbjct: 95 QLPDTIFDTQLAASVLGLGEQVG-------YGNLVKTVLNVDL------DKAHSRT---- 137
Query: 181 DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
WT RPL+ + AADDVR+L +YH M + L +
Sbjct: 138 ---DWTARPLSTAQLDYAADDVRYLRSLYHQMQQSLTE 172
>gi|392985222|ref|YP_006483809.1| ribonuclease D [Pseudomonas aeruginosa DK2]
gi|419751377|ref|ZP_14277789.1| ribonuclease D [Pseudomonas aeruginosa PADK2_CF510]
gi|384402151|gb|EIE48502.1| ribonuclease D [Pseudomonas aeruginosa PADK2_CF510]
gi|392320727|gb|AFM66107.1| ribonuclease D [Pseudomonas aeruginosa DK2]
Length = 376
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 75 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 117
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 118 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 174
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 175 LSEEKRAWLLEDGAELVANLC-RESD 199
>gi|71657562|ref|XP_817295.1| ribosomal RNA processing protein 6 [Trypanosoma cruzi strain CL
Brener]
gi|70882476|gb|EAN95444.1| ribosomal RNA processing protein 6, putative [Trypanosoma cruzi]
Length = 768
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 31/188 (16%)
Query: 35 SQLPAEFLEPSSERQLVIGFDCE----GVDLCRH------GSLCIMQLAFPDAIYLVDAI 84
+Q P F++ + + + V+ + VDL H G C+MQ++ L+D +
Sbjct: 264 AQCPLRFVDATVDLEDVVALLLKEKEIAVDLEHHSFYSYQGFTCLMQISTRSEDILIDCL 323
Query: 85 QGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
+ + + P + I KV+H + D L FG+ L N DT IA + G
Sbjct: 324 KL-RSSMHLLAPVFLNPNILKVLHGAREDIRWLQKDFGLYLVNFFDTGIALQTLHMPHG- 381
Query: 145 KRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
++F A +C + +K + W RP+ M A D F
Sbjct: 382 -------LAF----AVDHFCQVKLDKKYQT--------ADWRIRPIPAEMATYARQDTHF 422
Query: 205 LPYIYHNM 212
L Y+Y +
Sbjct: 423 LLYVYDRL 430
>gi|399154517|ref|ZP_10754584.1| Ribonuclease D [gamma proteobacterium SCGC AAA007-O20]
Length = 345
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 61/146 (41%), Gaps = 34/146 (23%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK---VIHDCKRDSEALYFQFGI 123
LC++Q+A +D + +K +P E Y K V+H ++D EALY
Sbjct: 37 LCLVQIATSHFAECIDVLS-----IKDLEPLFEKLYHNKTEWVVHSARQDIEALYHLSKR 91
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
++ DTQIA SL+ ISYQ E+ ++ D
Sbjct: 92 IPSSLFDTQIAASLLNYP----------------------LQISYQALTEILQGVQLDKS 129
Query: 184 F----WTYRPLTELMVRAAADDVRFL 205
F WT RPL +V A DDVR+L
Sbjct: 130 FTRFDWTTRPLPANVVEYALDDVRYL 155
>gi|414871321|tpg|DAA49878.1| TPA: hypothetical protein ZEAMMB73_153639 [Zea mays]
Length = 532
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + KV+H RD L F I
Sbjct: 298 QGLTCLMQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSI 357
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A +++ D S LL +CG++ ++ +
Sbjct: 358 YVCNLFDTGQASKVLQM---------DRNSLEHLLH--HFCGVAANKEYQA--------A 398
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL + M++ A +D +L YIY M +L
Sbjct: 399 DWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRL 431
>gi|198421501|ref|XP_002119853.1| PREDICTED: similar to exosome component 10, partial [Ciona
intestinalis]
Length = 647
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 67/164 (40%), Gaps = 29/164 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQL+ Y+VD I + + I KV H
Sbjct: 87 AVDLEAHSYRSYQGITCLMQLSTRTKDYIVDTI-ALRAELNILNQVFANPNIIKVFHGAD 145
Query: 112 RDSEALYFQFGIKLHNVVDT-QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D L FGI + N+ DT Q A +L G +R DY+ YC + +
Sbjct: 146 SDIIWLQRDFGIYVVNLFDTGQAARAL-----GLQRHSLDYLL-------THYCNVQADK 193
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214
K ++ W RPL + M+ A D +L Y+Y +MM+
Sbjct: 194 KYQL--------ADWRIRPLPKEMLLYAQGDTHYLLYVY-DMMR 228
>gi|13195121|gb|AAK13017.1| RNase D [Agrobacterium tumefaciens]
Length = 388
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P LVD + G + + + + + KV H ++D E +Y G+ H
Sbjct: 37 LCLVQMASPTLEVLVDPLAKGIDLTPMFE-LMANPNVVKVFHAARQDIEIIYHLGGLIPH 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D IS+ L+ Q+ + V++ W+
Sbjct: 96 PIFDTQVAAMVC--------GFGDSISYDQLV----------QKIKNVQIDKSSRFTDWS 137
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ--SLW 222
RPLTE + A DV L +Y ++ +L ++ SLW
Sbjct: 138 RRPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLW 175
>gi|333892430|ref|YP_004466305.1| ribonuclease D [Alteromonas sp. SN2]
gi|332992448|gb|AEF02503.1| ribonuclease D [Alteromonas sp. SN2]
Length = 385
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
+E++ + KV+H C D E F V D+Q A S++ G S Y V L
Sbjct: 70 MENTRVVKVLHSCSEDLETFLTAFNTVPTPVFDSQFAASIL----GLGASLG-YAKLVEL 124
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
L C +S + E R D W RPL E + AA+DV +L Y ++++K+N
Sbjct: 125 L-----CDVSLDKGES-----RTD---WIARPLREAQLSYAANDVLYLLPCYEHLVEKIN 171
Query: 218 Q 218
+
Sbjct: 172 E 172
>gi|433657124|ref|YP_007274503.1| Ribonuclease D [Vibrio parahaemolyticus BB22OP]
gi|432507812|gb|AGB09329.1| Ribonuclease D [Vibrio parahaemolyticus BB22OP]
Length = 388
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDASVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLS----TGFATL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G++ + E R D W RPLT+ + AA DV +L +Y ++ K+
Sbjct: 138 VEE--YLGVALDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEKLLDKVT 187
Query: 218 QQSLW 222
+ W
Sbjct: 188 EAGWW 192
>gi|260776343|ref|ZP_05885238.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
gi|260607566|gb|EEX33831.1| ribonuclease D [Vibrio coralliilyticus ATCC BAA-450]
Length = 371
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG + +VDTQ+ + + G S F L
Sbjct: 70 LKDTSVLKVLHACGEDLEVFNNSFGCLPYPMVDTQLMAAFL----GHGLS----TGFASL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ Y G+ + E R D W RPLT+ + AA DV +L +Y +++++
Sbjct: 122 VES--YLGVELDKSES-----RTD---WLARPLTDKQLDYAAADVHYLLPLYEKLLEEIT 171
Query: 218 QQSLWYLA 225
Q W A
Sbjct: 172 QAGWWEAA 179
>gi|148237165|ref|NP_001084822.1| exosome component 10 [Xenopus laevis]
gi|47124776|gb|AAH70757.1| MGC83774 protein [Xenopus laevis]
Length = 883
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 26/161 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ Y++D ++ + + + I KV H
Sbjct: 307 AVDLEHHSYRSFLGLTCLMQISTRTEDYIIDVLELRSNLY-ILNESFTNPSIIKVFHGAD 365
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A ++ GR S D + YC + ++
Sbjct: 366 SDIEWLQKDFGLYIVNMFDTHQAARIL--NLGR-HSLDHLLRL--------YCNVESDKR 414
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
++ W RPL E M+ A D +L YIY M
Sbjct: 415 YQLAD--------WRIRPLPEEMLEYARVDTHYLLYIYDKM 447
>gi|83855386|ref|ZP_00948916.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
gi|83941910|ref|ZP_00954372.1| exonuclease, putative [Sulfitobacter sp. EE-36]
gi|83843229|gb|EAP82396.1| exonuclease, putative [Sulfitobacter sp. NAS-14.1]
gi|83847730|gb|EAP85605.1| exonuclease, putative [Sulfitobacter sp. EE-36]
Length = 204
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
++ DCE + L H LC++QL+ D + I G+T LE ++ K+ H
Sbjct: 19 MVAIDCETMGLHPHRDRLCVVQLSGGDGNAHLVQIAKGQTEAPNLCALLEDPHVLKLFHY 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D AL FG K V T+IA L+ R GL + C Q
Sbjct: 79 GRFDIAALLNTFGAKAAPVYCTKIASRLVRTYTDRH----------GL---AKLC----Q 121
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
E V + +Q W LT+ + AA DV L H + LNQ
Sbjct: 122 ELLSVDISKQQQSSDWGAETLTKAQIDYAASDVLHL----HKLRDVLNQ 166
>gi|340053178|emb|CCC47466.1| putative ribosomal RNA processing protein 6 [Trypanosoma vivax
Y486]
Length = 709
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C++Q++ +++D ++ ++ P S I KV+H
Sbjct: 232 IAVDLEHHDFYSYQGFTCLVQISTRTQDFIIDCLKLRASM-HLLSPVFLSPRIIKVLHGA 290
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L FGI + N+ DT IA + ++ + A +C + +
Sbjct: 291 REDIRWLQKDFGIYVVNLFDTSIALQQL------------HMPYSLAFAVDHFCQVKLDK 338
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
K + W RP+ MV A D FL YIY +
Sbjct: 339 KYQT--------ADWRVRPIPIEMVSYAQQDTHFLLYIYDRL 372
>gi|186684292|ref|YP_001867488.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
gi|186466744|gb|ACC82545.1| 3'-5' exonuclease [Nostoc punctiforme PCC 73102]
Length = 209
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 24/188 (12%)
Query: 40 EFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPAL 98
++LE ++ I D E + L + LC++QL + V I G+T K
Sbjct: 20 QYLESTA-----IAVDTETMGLLPQRDRLCLVQLCNLEGKVTVIRIAKGQTEAPNLKKLF 74
Query: 99 ESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLL 158
E++ + KV H + D L GI++ V T+IA L R D
Sbjct: 75 EAANVVKVFHFARFDIATLRANLGIQVSPVFCTKIASKLARTYTNRHGLKD--------- 125
Query: 159 ADPRYCGISYQEKEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
QE E+V + W L+E + AA+DVR+L + + + L
Sbjct: 126 --------VVQELEKVELDKSSQSSDWGNAVSLSEAQLSYAANDVRYLLSVQQKLTEMLK 177
Query: 218 QQSLWYLA 225
++ W +A
Sbjct: 178 REERWKIA 185
>gi|418715523|ref|ZP_13275644.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
gi|418727334|ref|ZP_13285929.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|409959575|gb|EKO23345.1| 3'-5' exonuclease [Leptospira interrogans str. UI 12621]
gi|410788424|gb|EKR82142.1| 3'-5' exonuclease [Leptospira interrogans str. UI 08452]
Length = 388
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 22/176 (12%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + S +C++Q++ Y++D ++ ++ E I K+ H
Sbjct: 29 ISVDTESSGYYTYFSKVCLIQISAKGKNYIIDPLKLQN--LENLGNLFEDKKILKIFHSA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D +AL FG + N+ DT + L++ ++ DY Y I +
Sbjct: 87 IDDIKALKKDFGFQFQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSK 135
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
KE+ W RPL + ++ AA D +L I+ M ++L +++L+ A+
Sbjct: 136 KEQ--------KSNWEKRPLEKSQLQYAALDTVYLETIWEKMKEELIKRNLYEEAI 183
>gi|418594535|ref|ZP_13158323.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P2]
gi|375043331|gb|EHS35959.1| ribonuclease D [Pseudomonas aeruginosa MPAO1/P2]
Length = 393
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 92 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 134
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 135 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDTR 191
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 192 LSEEKRAWLLEDGAELVANLC-RESD 216
>gi|393774580|ref|ZP_10362942.1| ribonuclease D [Novosphingobium sp. Rr 2-17]
gi|392720063|gb|EIZ77566.1| ribonuclease D [Novosphingobium sp. Rr 2-17]
Length = 405
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 18/150 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A + +D + G + + + + KV H +D E ++ G H
Sbjct: 42 LCLVQIANTEEAAAIDPLAEGIDLTPMFELLTNNEDVLKVFHAGGQDVEIIFNFTGRTPH 101
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA + + E S + +++GL D G + + W+
Sbjct: 102 PIFDTQIAMMAVSQSEQIGYS-NLVEAWLGLTIDK---GARFTD--------------WS 143
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
RPLTE + A DV L I+ ++K+L
Sbjct: 144 RRPLTERQIEYAIGDVTHLSKIFPKLLKRL 173
>gi|115525280|ref|YP_782191.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
gi|115519227|gb|ABJ07211.1| ribonuclease D [Rhodopseudomonas palustris BisA53]
Length = 392
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 28 IHIVTNASQLPAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQG 86
+ ++T + QL A + +Q VI D E + + + LC++Q+A D ++D++
Sbjct: 1 MDLITTSEQLAAACARFA--KQPVITVDTEFLRETTYYPLLCVVQIASADEAVVIDSLAP 58
Query: 87 GETVVKACKPALE---SSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEG 143
G + KP E ++ KV H ++D E ++ + GI H + DTQ+A ++
Sbjct: 59 GIDL----KPFFELMADEHVLKVFHAARQDIEIVWHRAGILPHPIFDTQVAAMVL----- 109
Query: 144 RKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVR 203
D I++ L+ R G + W+ RPLTE V A DV
Sbjct: 110 ---GYGDSIAYDQLV--ERITGHRPDKTHRF--------TDWSRRPLTEEQVHYAVSDVT 156
Query: 204 FLPYIYHNMMKKLNQQ 219
L ++ + L ++
Sbjct: 157 HLRDVFAALDADLKKR 172
>gi|398831381|ref|ZP_10589559.1| ribonuclease D [Phyllobacterium sp. YR531]
gi|398212088|gb|EJM98697.1| ribonuclease D [Phyllobacterium sp. YR531]
Length = 386
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 21/169 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD +VDA+ G + K + I KV H ++D E ++ + H
Sbjct: 39 LCVIQLASPDHTAIVDALAPGLDLAAFFK-LMADETIVKVFHAARQDIEIIFHLGNLIPH 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
V DTQ+A + D I++ L+ R G + W
Sbjct: 98 PVFDTQVAAMVC--------GFGDAIAYDQLV--QRVVGAQIDKSSRF--------TDWR 139
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ--SLWYLAVRGALYCR 233
RPL+E + A DV L IY ++ K L + + W L L R
Sbjct: 140 RRPLSEKQLDYALADVTHLRDIYLHLKKSLEAEGRTEWVLDEMKILTAR 188
>gi|289724909|gb|ADD18385.1| putative 3'-5' exonuclease [Glossina morsitans morsitans]
Length = 224
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 49 QLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIH 108
Q +I E V+ CR+ ++ +A +Y+ D I + V LE+ Y KV+H
Sbjct: 50 QSLIALIIEPVESCRNNKTSVIAIATATNVYIFD-ILYLDKVYPDFGRILEAKYPRKVVH 108
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
+ + + L + + L + DT +AY L+ + + + S + D ++Y
Sbjct: 109 NSHKIVDHLQHRQNVNLSGIFDTFVAYCLVSDDKTHR-------SLEETIQDTLNMPLTY 161
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTE----LMVRAAADDVRFLPYIYHNMMKK 215
E EE R +P RPL L+ + A ++ YI H M K
Sbjct: 162 FETEETRT----NPFTPYKRPLMNAWLSLIAKKALLQLKLAEYILHKRMLK 208
>gi|258541225|ref|YP_003186658.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
gi|384041146|ref|YP_005479890.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
gi|384049661|ref|YP_005476724.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
gi|384052771|ref|YP_005485865.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
gi|384056003|ref|YP_005488670.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
gi|384058644|ref|YP_005497772.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
gi|384061938|ref|YP_005482580.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
gi|384118014|ref|YP_005500638.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632303|dbj|BAH98278.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01]
gi|256635360|dbj|BAI01329.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-03]
gi|256638415|dbj|BAI04377.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-07]
gi|256641469|dbj|BAI07424.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-22]
gi|256644524|dbj|BAI10472.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-26]
gi|256647579|dbj|BAI13520.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-32]
gi|256650632|dbj|BAI16566.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653623|dbj|BAI19550.1| ribonuclease D [Acetobacter pasteurianus IFO 3283-12]
Length = 402
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 27/157 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+ + + L+DA+ G + K + + KV H ++D E F
Sbjct: 50 LCLVQIGATNDVVLIDALADGIDLTP-LKNLFVDTAVLKVFHAARQDLEIFLHLFDALPT 108
Query: 127 NVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ DTQ+A + +Q G Y S VG L ++ + +F
Sbjct: 109 PLFDTQVAAMVAGFGDQVG-------YDSLVGSLTGH---------------MIDKSHRF 146
Query: 185 --WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W+ RPL+ + AA DV +L +Y ++KKL Q+
Sbjct: 147 TDWSVRPLSPAQLTYAAGDVTWLRLVYERLVKKLEQE 183
>gi|296815198|ref|XP_002847936.1| exosome component 3'-5' exonuclease [Arthroderma otae CBS 113480]
gi|238840961|gb|EEQ30623.1| ribosomal RNA processing 3'-5' exonuclease [Arthroderma otae CBS
113480]
Length = 810
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 67/170 (39%), Gaps = 20/170 (11%)
Query: 52 IGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D HG +C+MQ++ + ++VD ++ ++ I KV+H
Sbjct: 268 IAVDLEHHDAHVYHGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIVKVLHGS 327
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D L G+ L + DT A S++ Q +K +VG AD +Y
Sbjct: 328 SMDVIWLQRDLGLYLVGLFDTFHAASML--QLPKKSLKFLLQQYVGFDADKQYQTAD--- 382
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL M+ A D FL YI+ + +L + S
Sbjct: 383 --------------WRIRPLLPGMLDYARSDTHFLLYIFDRLRNELIEAS 418
>gi|453046792|gb|EME94507.1| ribonuclease D [Pseudomonas aeruginosa PA21_ST175]
Length = 393
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 92 LEDERVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 134
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 135 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 191
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 192 LSEEKRAWLLEDGAELVANLC-RESD 216
>gi|429216149|ref|ZP_19207308.1| ribonuclease D [Pseudomonas sp. M1]
gi|428153802|gb|EKX00356.1| ribonuclease D [Pseudomonas sp. M1]
Length = 377
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 30/138 (21%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE+S + KV H C D E G + DTQ+A +++G+
Sbjct: 73 LEASSVVKVFHACGEDLEVFQRLTGSLPQPLFDTQLA-----------------AAYLGM 115
Query: 158 LADPRYCGISYQ------EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHN 211
Y + + K+E R W RPLT++ VR AA+DV+ L +Y
Sbjct: 116 AHSMGYSKLVLEILGLDLPKDETR-------SDWLQRPLTDMQVRYAAEDVQHLAEVYVK 168
Query: 212 MMKKLNQQSLWYLAVRGA 229
+ +L + L +L GA
Sbjct: 169 LAPRLPEHKLAWLLADGA 186
>gi|414871320|tpg|DAA49877.1| TPA: hypothetical protein ZEAMMB73_153639 [Zea mays]
Length = 901
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + KV+H RD L F I
Sbjct: 298 QGLTCLMQISTRTEDFIVDTLKLRKYLGDYLREFFRDPTKKKVMHGAGRDIIWLQRDFSI 357
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A +++ D S LL +CG++ ++ +
Sbjct: 358 YVCNLFDTGQASKVLQM---------DRNSLEHLLH--HFCGVAANKEYQA--------A 398
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL + M++ A +D +L YIY M +L
Sbjct: 399 DWRLRPLPDEMIKYAREDTHYLLYIYDLMRLRL 431
>gi|402223082|gb|EJU03147.1| hypothetical protein DACRYDRAFT_50127, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 555
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G +C+MQL+ +A ++VD + E + + S I KV H
Sbjct: 287 AVDLEHHDYRSYRGIVCLMQLSTREADWVVDTLALREEL-EVLNEVFADSNIVKVFHGAT 345
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-VGLLADPRYCGISYQE 170
D L F + + N+ DT A + ++ +F + L D YC
Sbjct: 346 MDINWLQRDFNLYIVNLFDTYYASKAL-----------NFPAFSLAFLLD-LYCEF---- 389
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
K + R L W RPL + M+ A D FL Y+Y + L
Sbjct: 390 KADKRFQLAD----WRIRPLPQEMMDYARSDTHFLLYVYDQVRNDL 431
>gi|424792164|ref|ZP_18218419.1| Ribonuclease D [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422797191|gb|EKU25566.1| Ribonuclease D [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 361
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 73/181 (40%), Gaps = 21/181 (11%)
Query: 38 PAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKP 96
PAE E ++R IG D E V + L ++Q+A D I L+D + G + +A P
Sbjct: 8 PAELAERLAQRPARIGLDTEFVRERTYWPQLALVQMAVADEILLIDPLIPG--MPQALAP 65
Query: 97 ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156
L I KV+H D A G + DTQI L G Y V
Sbjct: 66 WLSDPAILKVMHSASEDLVAFKCACGALPRPLFDTQIGAGLAGIGAGMG-----YQKLVQ 120
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
G+ + E R D W RPL+ + AADDVR L I+ + ++L
Sbjct: 121 -----EITGVHLAKGET-----RSD---WLRRPLSPAQLDYAADDVRHLFAIHDALQERL 167
Query: 217 N 217
Sbjct: 168 Q 168
>gi|298491354|ref|YP_003721531.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
gi|298233272|gb|ADI64408.1| 3'-5' exonuclease ['Nostoc azollae' 0708]
Length = 209
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QL I G+T K LE+++I KV H
Sbjct: 27 IAVDTETMGLLPQRDRLCLVQLCNSQGKVTAICIAKGQTEAPNLKQLLEATHILKVFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L I++ V T+IA L Y + GL QE
Sbjct: 87 RFDVATLRHNLEIQVQPVFCTKIASKL----------ARTYTNLHGL-------KDVVQE 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E+V + W L+E + AA+DVR+L + + + L ++ W LA
Sbjct: 130 LEQVELDKSAQSSDWGNAVNLSETQLSYAANDVRYLLNVQQKLTQMLEREGRWELA 185
>gi|329114834|ref|ZP_08243590.1| Ribonuclease D [Acetobacter pomorum DM001]
gi|326695731|gb|EGE47416.1| Ribonuclease D [Acetobacter pomorum DM001]
Length = 406
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 27/157 (17%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+ I L+DA+ G + K + + KV H ++D E F
Sbjct: 54 LCLVQIGATHDIVLIDALAEGIDLTP-LKNLFADTAVLKVFHAARQDLEIFLHLFDALPT 112
Query: 127 NVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ DTQ+A + +Q G Y S VG L ++ + +F
Sbjct: 113 PLFDTQVAAMVAGFGDQVG-------YDSLVGSLTGH---------------MIDKSHRF 150
Query: 185 --WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W+ RPL+ + AA DV +L +Y ++KKL Q+
Sbjct: 151 TDWSVRPLSPAQLTYAAGDVTWLRLVYERLVKKLEQE 187
>gi|301119505|ref|XP_002907480.1| exosome complex exonuclease RRP6-like protein [Phytophthora
infestans T30-4]
gi|262105992|gb|EEY64044.1| exosome complex exonuclease RRP6-like protein [Phytophthora
infestans T30-4]
Length = 1465
Score = 43.9 bits (102), Expect = 0.092, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 34/171 (19%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVD--AIQGGETVVKA--CKPALESSYITKVI 107
VDL H G C+MQ++ +LVD A++G + C P KV+
Sbjct: 269 AVDLEHHSYRSYMGLTCLMQISTAQEDFLVDTLALRGKLQTLNQVFCDPEK-----VKVL 323
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
H D L G+ + N+ DT A L++ Y F R+C I
Sbjct: 324 HGSDMDILWLQRDLGLYIVNLFDTGRAARLLQ-----------YPRFSLAYMLKRHCNID 372
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
++ ++ W RPL + MV+ A +D R+L +IY + K+L Q
Sbjct: 373 ADKQYQL--------ADWRTRPLDKNMVKYAREDTRYLLFIYDRLKKELLQ 415
>gi|399521199|ref|ZP_10761939.1| unnamed protein product [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110437|emb|CCH38498.1| unnamed protein product [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 373
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 70/170 (41%), Gaps = 38/170 (22%)
Query: 69 IMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128
++Q++ + YL+D ++ + A LE+ + KV+H C D E G +
Sbjct: 45 LLQVSAGEGAYLIDPLRIDDWQPFAA--LLEAPNVVKVLHSCSEDLEVFLRLTGSLPAPL 102
Query: 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLL---------R 179
DTQ+A Y++ G S V+ LL R
Sbjct: 103 FDTQLAAG--------------YLNL----------GFSMGYSRLVQALLDIELPKGETR 138
Query: 180 QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
D W RPL+EL VR AA+DV L +Y +M +L Q + ++ GA
Sbjct: 139 SD---WLQRPLSELQVRYAAEDVLHLVEVYRALMARLAPQKVEWILEDGA 185
>gi|84393455|ref|ZP_00992211.1| ribonuclease D, partial [Vibrio splendidus 12B01]
gi|84375883|gb|EAP92774.1| ribonuclease D, partial [Vibrio splendidus 12B01]
Length = 313
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 18/128 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 95 LKDTSVLKVLHACGEDLEVFQNAFGCTPTPMVDTQIMAAFL----GHGLS----TGFAAL 146
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+++ + G+ + E R D W RPL++ + AA DV +L +Y+ +++K+
Sbjct: 147 VSE--FVGVDLDKSES-----RTD---WLARPLSQKQLDYAAADVHYLMPMYNKLLEKVM 196
Query: 218 QQSLWYLA 225
+ W A
Sbjct: 197 EAGWWEAA 204
>gi|395789430|ref|ZP_10468950.1| ribonuclease D [Bartonella taylorii 8TBB]
gi|395429973|gb|EJF96025.1| ribonuclease D [Bartonella taylorii 8TBB]
Length = 384
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D + + ++A + + I KV H ++D E +Y GI
Sbjct: 40 LCLIQLASPDTTVLIDPM-SQDIDLQAFFDLMVDNKIVKVFHAARQDIETIYHLGGIIPS 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA S+ D IS+ ++ R G +Q + R W+
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIVQ--RCTG--HQLDKSSRF------TDWS 140
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
RPL+E + A DV +L IY + K+L N++ W
Sbjct: 141 CRPLSEKQLLYALADVTYLRDIYLLLKKQLEKNKRIHW 178
>gi|154247067|ref|YP_001418025.1| ribonuclease D [Xanthobacter autotrophicus Py2]
gi|154161152|gb|ABS68368.1| ribonuclease D [Xanthobacter autotrophicus Py2]
Length = 382
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P+ L+DA+ G + + + + + KV H ++D E ++ Q + H
Sbjct: 39 LCVVQVASPEEAVLIDALADGLDLAPFYR-LMANERVMKVFHAGRQDIEIIWHQARLIPH 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
V DTQ+A ++ D IS+ L+ R G + L + +F
Sbjct: 98 PVFDTQVAAMVL--------GYGDSISYDQLV--QRVTGHA----------LDKSSRFTD 137
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W+ RPL++ + A DV L IY + L +
Sbjct: 138 WSRRPLSQAQIVYAVADVTHLRDIYIKLTTDLETR 172
>gi|403371484|gb|EJY85623.1| 3'-5' exonuclease family protein [Oxytricha trifallax]
Length = 1077
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 80/202 (39%), Gaps = 15/202 (7%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQL--VIGFDCEGVDLCRHGSL-CIMQLAFPDAIYLVD 82
P + + QL A E E ++ D E +L +H + C++Q++ Y++D
Sbjct: 829 TPFQWIDSQQQLEASIKEIKEELSHCNLLSVDIEYHNLAKHTCIVCLIQISTYSKDYVID 888
Query: 83 AIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQE 142
++ E V + + I K+ H C D + L I + N+ DT AY I +
Sbjct: 889 VLKTKEFVAQYIQEIFVDPSIVKIFHGCDSDIQILASDLDIFVVNLFDTARAYQAIFKLP 948
Query: 143 GRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDV 202
D S L ++ GI + +V W RPL + M+ A D
Sbjct: 949 ENAPKHVDLTSLESLC--DKFLGIQLDKFFQVSD--------WRIRPLPQGMMDYARSDS 998
Query: 203 RFLPYIYHNMMKKLNQQ--SLW 222
FL +Y + L Q S+W
Sbjct: 999 HFLIPLYTIFQQILTGQINSVW 1020
>gi|350552229|ref|ZP_08921434.1| ribonuclease D [Thiorhodospira sibirica ATCC 700588]
gi|349794882|gb|EGZ48690.1| ribonuclease D [Thiorhodospira sibirica ATCC 700588]
Length = 391
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 27/176 (15%)
Query: 47 ERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGE-TVVKACKPALESSYIT 104
++Q D E V + + LC++Q+A + +D + + + AC L + IT
Sbjct: 21 QQQRWFALDTEFVREKTYYPKLCLIQVATAQQVACIDPLHISDLSPFLAC---LHNPAIT 77
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE--EQEGRKRSPDDYISFVGLLADPR 162
KV+H +D E Y G + DTQ+A +L+ +Q G Y V +
Sbjct: 78 KVLHAASQDLELFYCLDGRVPAPIFDTQLAGALLGYGDQAG-------YAKLVSAM---- 126
Query: 163 YCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
G+ + + R D W+ RPL+ +R A DDVR+L +Y M +L++
Sbjct: 127 -LGVELDKD-----MTRTD---WSQRPLSAAQLRYAEDDVRYLAQLYPLMHTQLSE 173
>gi|86147639|ref|ZP_01065948.1| ribonuclease D [Vibrio sp. MED222]
gi|85834550|gb|EAQ52699.1| ribonuclease D [Vibrio sp. MED222]
Length = 397
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 21/176 (11%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + L ++QL + + L+D I E + L+ + + KV+H
Sbjct: 49 VVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIALDE--MTPFVGLLKDTSVLKVLHA 106
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E FG +VDTQI + + G S F L+++ + G+
Sbjct: 107 CGEDLEVFQNAFGCTPTPMVDTQIMAAFL----GHGLS----TGFAALVSE--FVGVDLD 156
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ E R D W RPL++ + AA DV +L +Y+ +++K+ + W A
Sbjct: 157 KSES-----RTD---WLARPLSQKQLDYAAADVHYLMPMYNKILEKVMEAGWWEAA 204
>gi|451981521|ref|ZP_21929873.1| putative ribonuclease D [Nitrospina gracilis 3/211]
gi|451761194|emb|CCQ91137.1| putative ribonuclease D [Nitrospina gracilis 3/211]
Length = 393
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 21/124 (16%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ I KV H K+D E LY G + V DTQ+A ++I ISF L
Sbjct: 67 LKRRDILKVFHAGKQDLEILYRLAGEVIEPVFDTQVAAAMI--------GWGAQISFAKL 118
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---MK 214
+ R G + E W RPL+ + A DDVRFL +Y + +K
Sbjct: 119 VK--RATGKRLHKNETY--------SDWCRRPLSPNQIEYALDDVRFLVPVYEKIVAQLK 168
Query: 215 KLNQ 218
KLN+
Sbjct: 169 KLNR 172
>gi|146312020|ref|YP_001177094.1| ribonuclease D [Enterobacter sp. 638]
gi|145318896|gb|ABP61043.1| ribonuclease D [Enterobacter sp. 638]
Length = 384
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 100/272 (36%), Gaps = 61/272 (22%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E V + L ++Q+ + L+D + G T + L ++ ITK +H
Sbjct: 33 AIALDTEFVRTRTYYPQLGLIQMYDGKNVSLIDPL--GITDWSPMRELLLNTAITKYLHA 90
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
D E FGI ++DTQI + GR S F ++ + Y GI+
Sbjct: 91 GSEDLEVFLNTFGIMPEPLIDTQILAAF----SGRPLS----WGFAAMVEE--YTGIALD 140
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK--------------- 214
+ E R D W RPLTE + AA DV +L I +MK
Sbjct: 141 KSES-----RTD---WLARPLTERQLDYAAADVFYLLPIAGQLMKEAEAAGWLDAALNEC 192
Query: 215 KLNQQ----------------SLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVE 258
++ QQ + W L R L C DW L V
Sbjct: 193 RMTQQRRQETVDPKDAWRDITNAWQLRTR-QLACLQLL------ADWRLRKARERDLAVN 245
Query: 259 GDVPEEEILSILDVPPGKMGRI--IGRRGSSI 288
V EE + ++ PG MG + IG GS I
Sbjct: 246 FVVREEHLWAVARYMPGSMGELDSIGLSGSEI 277
>gi|453088404|gb|EMF16444.1| hypothetical protein SEPMUDRAFT_33190 [Mycosphaerella populorum
SO2202]
Length = 265
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 55 DCEGVDLCRHGSLCIMQLAFP--DAIYLVD-------AIQGGETVVKACKPALESSYITK 105
D EG +L R+G+L ++ + +Y VD A + ++ + LES I K
Sbjct: 32 DLEGNNLSRNGTLSLITILVEPQQKVYFVDVTTLKEDAFDATGSKKRSIRSILESKEIIK 91
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQI 133
V D + DS+AL+ +G+++ + D Q+
Sbjct: 92 VFFDIRNDSDALFSLYGVRVDGIEDLQL 119
>gi|408788884|ref|ZP_11200598.1| ribonuclease D [Rhizobium lupini HPC(L)]
gi|408485322|gb|EKJ93662.1| ribonuclease D [Rhizobium lupini HPC(L)]
Length = 386
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P LVD + G + + + + + KV H ++D E +Y G+ H
Sbjct: 37 LCLVQMASPTLEVLVDPLAKGLDLTPLFE-LMANPGVVKVFHAARQDIEIIYHLGGLIPH 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D IS+ L+ Q+ + V++ W+
Sbjct: 96 PIFDTQVAAMVC--------GFGDSISYDQLV----------QKIKNVQIDKSSRFTDWS 137
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ--SLW 222
RPLTE + A DV L +Y ++ +L ++ SLW
Sbjct: 138 RRPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLW 175
>gi|302337887|ref|YP_003803093.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293]
gi|301635072|gb|ADK80499.1| 3'-5' exonuclease [Spirochaeta smaragdinae DSM 11293]
Length = 284
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 22/172 (12%)
Query: 52 IGFDCEG-VDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D EG +L R+G LC++Q+ + + +VD + +V+ ES K+++D
Sbjct: 29 IAVDIEGEFNLHRYGEHLCLVQVWDGEVLAIVDPLVVDLALVREI---FESGSFRKIVYD 85
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D LY ++GI + V D A L++ Q +K S + + P+ Y
Sbjct: 86 CSSDRTLLYRRYGIHFNEVCDLMPAVVLLDFQ--KKGLASVLSSVLHIEEKPKKKFQQYD 143
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
W RP+ + AA DV L + + K+L ++ L
Sbjct: 144 ---------------WMSRPIDADALEYAAADVLHLFTLKEELFKRLEEEGL 180
>gi|254226821|ref|ZP_04920393.1| ribonuclease D [Vibrio cholerae V51]
gi|125620668|gb|EAZ49030.1| ribonuclease D [Vibrio cholerae V51]
Length = 381
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLLERVT 179
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 180 QAGWWEAALQ 189
>gi|293192610|ref|ZP_06609564.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
gi|292820117|gb|EFF79114.1| putative ribonuclease D [Actinomyces odontolyticus F0309]
Length = 414
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 27/183 (14%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPD-AIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E R+GS ++Q+ D +L+D + V +P +E ++ +HD
Sbjct: 51 IALDVERAQGFRYGSDPYLVQIRREDVGTFLIDTHALPDLSV--LQPGVEDVWL---LHD 105
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C +D L Q G++ + DT+IA LI + + + + +GL+ D +Q
Sbjct: 106 CLQDLPNLR-QVGLRPSALFDTEIAARLIGLERFGLAAVVEQVLGLGLVKD-------HQ 157
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
+ W+ RPL + +R AA DV L +Y+ + K+L++ W A +
Sbjct: 158 ASD------------WSVRPLPKEWLRYAALDVELLTELYYRLSKRLDEMGRWEWAQQEF 205
Query: 230 LYC 232
Y
Sbjct: 206 AYA 208
>gi|427714228|ref|YP_007062852.1| ribonuclease D [Synechococcus sp. PCC 6312]
gi|427378357|gb|AFY62309.1| ribonuclease D [Synechococcus sp. PCC 6312]
Length = 210
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 75/187 (40%), Gaps = 17/187 (9%)
Query: 39 AEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPAL 98
A F + +L I + G+ R LC++Q+ P V I G+T K L
Sbjct: 17 ASFEQFRQADRLAIDTETMGLKPSR-DRLCLVQICDPQGEVAVIRIDRGQTQAPLLKHLL 75
Query: 99 ESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLL 158
E+ TKV H + D L Q GI++ + T+IA L R SP + V L
Sbjct: 76 EAPDSTKVFHFARFDLGILQHQLGIRVAPIFCTKIASKL-----ARTYSPRHGLKEVVL- 129
Query: 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
G+ + Q + L+E +R AA+DVR+L + L +
Sbjct: 130 ---ELTGVELDKSS-------QSSDWGNAANLSESQLRYAANDVRYLLSAQAQLQAMLAR 179
Query: 219 QSLWYLA 225
+ W LA
Sbjct: 180 ECRWSLA 186
>gi|406978449|gb|EKE00415.1| hypothetical protein ACD_22C00028G0003 [uncultured bacterium]
Length = 608
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 48 RQLVIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKV 106
++ ++G D E + +L ++Q+ P+ Y+ DA + K E+ I K+
Sbjct: 30 KEKILGVDIESTGFDPYTNTLLLVQIGTPEKSYIFDARKIPFKEYSLYKEIFENPKILKL 89
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGI 166
+H+ K D + + Q G ++ N+ DT + S++ K S L + + +
Sbjct: 90 LHNGKFDYQFIKKQTGAEVINIYDTMLTESVLTAGLRGKSSS---------LKELVFQYL 140
Query: 167 SYQEKEEVRVLLRQDPQFWTYR--PLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYL 224
+++ K++VR F T+ +TE +R +A D L I+ MK+L Q+ L +
Sbjct: 141 NFELKKDVR------ETFVTFAGGKITEDQLRYSALDTLVLFPIFEQQMKRLQQEGLVNI 194
Query: 225 A 225
A
Sbjct: 195 A 195
>gi|342179232|sp|A6V8R6.2|RND_PSEA7 RecName: Full=Ribonuclease D; Short=RNase D
Length = 376
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 75 LEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 117
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 118 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 174
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 175 LSEEKRAWLLEDGAELVANLC-RESD 199
>gi|145509024|ref|XP_001440456.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407673|emb|CAK73059.1| unnamed protein product [Paramecium tetraurelia]
Length = 733
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 32/210 (15%)
Query: 26 VPIHIVTN-----ASQLPAEFLEPSSERQL--------VIGFDCEGV-DLCRHGSLCIMQ 71
P I+TN L F S+E +L +IG D E D+ G + I+Q
Sbjct: 21 TPEEIITNFKNQQKQHLSKLFKYISNENELNQFQLKGSIIGVDIEHTNDIGFDGQISIVQ 80
Query: 72 LAFPDAIYLVDAIQGG---ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128
+ + +Y++D I+ G + ++ K E I KV + D L F I + N
Sbjct: 81 IKDDEDVYIIDVIEIGVDNQKLINVFKQIFEDDKIIKVFYAGSTDVLWLKRDFQITIQNF 140
Query: 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYR 188
D + E + K S IS + L +YC +Q + + ++ W R
Sbjct: 141 FDIK------EVADECKLSK---ISLIFLW--KQYC--DHQVSKSYKTNMQTSD--WAER 185
Query: 189 PLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
PLT+ + AA D +LPY+ + ++++L++
Sbjct: 186 PLTQEQLIYAAYDCYYLPYLRYVLLEELSK 215
>gi|410899603|ref|XP_003963286.1| PREDICTED: exosome component 10-like [Takifugu rubripes]
Length = 885
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 28/166 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ + +++D ++ + + A I KV H
Sbjct: 308 AVDLEHHSYRSFLGITCLMQISTREEDFIIDTLEV-RSEMYILNEAFTDPAIVKVFHGAD 366
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYIS-FVGLLADPRYCGISYQE 170
D E L FG+ + + DT A + + S D ++ F + +D RY
Sbjct: 367 SDIEWLQRDFGLYVVRLFDTHQASRALNLA---RHSLDHLLTHFCNVASDKRYQLAD--- 420
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL E MV+ A D +L YIY + +L
Sbjct: 421 --------------WRIRPLPEEMVQYARSDTHYLLYIYDRVRAQL 452
>gi|320159696|ref|YP_004172920.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
gi|319993549|dbj|BAJ62320.1| putative ribonuclease D [Anaerolinea thermophila UNI-1]
Length = 380
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 22/175 (12%)
Query: 52 IGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E L +C++Q + P A YLVD + + + I KV H
Sbjct: 31 IAVDTESNGLHAYQEQICLIQFSVPGADYLVDPL--ASVNLSGLNEIFSNPGIEKVFHAA 88
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L FG ++ DT IA ++ E + LL + + G++ +
Sbjct: 89 EYDILCLKRDFGFTFTHLFDTMIAARILGRSE---------VGLAALLEE--HFGVTLDK 137
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
R W RPL M+ A D +L + +++ K+L ++ L LA
Sbjct: 138 --------RYQRANWARRPLPPAMLNYARLDTHYLIDLRNHLAKELAERGLTALA 184
>gi|168065993|ref|XP_001784929.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663516|gb|EDQ50276.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 515
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 12 PLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQ 71
P+ +P +P+D P+ +++ AS+L ++ ++ + + G +C+MQ
Sbjct: 209 PVPQEP--RPVDET-PLTVISTASELKDMAMKCRLAGEIAVDLENHNY-RSFQGFVCLMQ 264
Query: 72 LAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDT 131
++ ++VDA+ + + K + + KV+H RD E L FGI + N+ DT
Sbjct: 265 VSTRSEDFIVDALALRSHMGPSLKDLFADANVKKVMHGADRDIEWLQRDFGIYVCNMFDT 324
Query: 132 QIAYSLIEEQEG 143
+ + + EG
Sbjct: 325 GQQAARVLQLEG 336
>gi|432864718|ref|XP_004070425.1| PREDICTED: exosome component 10-like [Oryzias latipes]
Length = 890
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 30/160 (18%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ D +++D ++ + + A I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRDEDFIIDTLEL-RSEMYILNEAFTDPTIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQ 169
D E L FG+ + N+ DT + R+ D++ F + +D RY
Sbjct: 370 SDIEWLQRDFGLYVVNLFDTHQGSRALH----LARNSLDHLLRHFCNVDSDKRYQLAD-- 423
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
W RPL + MV+ A D +L YIY
Sbjct: 424 ---------------WRIRPLPDEMVQYARTDTHYLLYIY 448
>gi|37522692|ref|NP_926069.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
gi|35213694|dbj|BAC91064.1| ribonuclease D [Gloeobacter violaceus PCC 7421]
Length = 208
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 17/178 (9%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
++ D E + L H LC++QL + + + G T + LE+ + K+ H
Sbjct: 25 LLAVDSEAMGLLPHRDRLCLVQLCDEAGLVSLVRLSAGLTQASQLQKVLEAPAVIKLFHY 84
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D L GI++ +V T++A L R D + VG+ D
Sbjct: 85 ARFDVAMLRHHLGIRVQPIVCTKVASKLARTYSPRHGLKDLVLETVGVELDKSA------ 138
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVR 227
Q + L+E +R AA+DVR+L + + L ++ + LA R
Sbjct: 139 ----------QSSDWGAVLELSEEQLRYAANDVRYLIPAWRKLETMLRREGRFELARR 186
>gi|152985900|ref|YP_001349451.1| ribonuclease D [Pseudomonas aeruginosa PA7]
gi|150961058|gb|ABR83083.1| ribonuclease D [Pseudomonas aeruginosa PA7]
Length = 393
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 23/146 (15%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE + KV+H C D E G + DTQ+A +++G+
Sbjct: 92 LEDPRVVKVLHACSEDLEVFLRLTGSLPVPLFDTQLA-----------------AAYLGM 134
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
G S KE + + L +D W RPLTE+ +R AADDV+ L +Y + +
Sbjct: 135 ---AHSMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDAR 191
Query: 216 LNQQSLWYLAVRGALYCRCFCINEND 241
L+++ +L GA C E+D
Sbjct: 192 LSEEKRAWLLEDGAELVANLC-RESD 216
>gi|354593277|ref|ZP_09011322.1| ribonuclease D [Commensalibacter intestini A911]
gi|353673342|gb|EHD15036.1| ribonuclease D [Commensalibacter intestini A911]
Length = 391
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 29/196 (14%)
Query: 27 PIHIVTNAS--QLPAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDA 83
P+ I+ N S Q+ A L + + D E V + LC++Q+A +YL+DA
Sbjct: 10 PVMIIDNRSLQQMVASLLSEA-----FVTMDTEFVREKTYWPELCLIQIAGKGNVYLLDA 64
Query: 84 IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEG 143
+ + + P L + +TK+ H ++D E FG V DTQ+A + G
Sbjct: 65 L-AKDIDLSLLLPLLSAPSVTKIFHAAQQDLEIFLHLFGKLPTPVFDTQVAAMV--AGFG 121
Query: 144 RKRSPDDYI-SFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDV 202
+ D + S +G+ D + + + W RPLT AA DV
Sbjct: 122 NQIGYDSLVDSLLGVAIDKSH---RFSD--------------WAMRPLTAAQQHYAAADV 164
Query: 203 RFLPYIYHNMMKKLNQ 218
+L +Y ++ KL+Q
Sbjct: 165 TYLWDVYQVLLNKLHQ 180
>gi|240850739|ref|YP_002972139.1| ribonuclease D [Bartonella grahamii as4aup]
gi|240267862|gb|ACS51450.1| ribonuclease D [Bartonella grahamii as4aup]
Length = 384
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 25/160 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D I + ++ + + KV H ++D E +Y G+
Sbjct: 40 LCLIQLASPDVTVLIDPI-APDIDLQPFFDLMIDKKVVKVFHAARQDIETIYHLGGVIPS 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQIA S+ D IS+ ++ + C + +K +F
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIV---QRCTGHHLDKSS---------RFTD 138
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
W+ RPL+E + A DV +L +Y + K+L NQ++ W
Sbjct: 139 WSCRPLSEKQLLYALADVTYLRDVYLLLKKRLEKNQRAHW 178
>gi|424799940|ref|ZP_18225482.1| Ribonuclease D [Cronobacter sakazakii 696]
gi|423235661|emb|CCK07352.1| Ribonuclease D [Cronobacter sakazakii 696]
Length = 369
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 78/203 (38%), Gaps = 28/203 (13%)
Query: 45 SSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYI 103
++ Q + D E V + L ++QL + + L+D + T + L+ +
Sbjct: 14 TARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPL--AITDWAPFQALLQDQNV 71
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
TK +H D E FG+ +DTQ+ SFVG P
Sbjct: 72 TKFLHAGSEDLEVFQNAFGMMPDPFIDTQV-----------------LASFVG---HPLS 111
Query: 164 CGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
CG + + V+L + W RPLTE AA DV +L I H +M+K+ +
Sbjct: 112 CGFAMLVEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEKVREAGW 171
Query: 222 WYLAVRGALYCRCFCINENDYVD 244
A+ CR + +D
Sbjct: 172 LTAAIN---ECRLMTQRRGEVLD 191
>gi|402819435|ref|ZP_10869003.1| hypothetical protein IMCC14465_02370 [alpha proteobacterium
IMCC14465]
gi|402511582|gb|EJW21843.1| hypothetical protein IMCC14465_02370 [alpha proteobacterium
IMCC14465]
Length = 383
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 41/161 (25%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETV-VKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
LC++Q+A PD L+D + E + + A L++ I KV+H C++D E + + GI
Sbjct: 39 LCLVQIAMPDFEVLIDPL--AENIDLSALFEILKNQNIIKVMHGCRQDIEIFHKEAGIIP 96
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF- 184
++DTQ+ + CG Y + L+++ PQ
Sbjct: 97 TPLMDTQVMAMV--------------------------CG--YGDSISYEALVKRIPQGT 128
Query: 185 ---------WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W+ RPL + + A DV +L I+ N+ +L
Sbjct: 129 IDKGSRFTDWSRRPLNDDQLTYALADVTYLRDIFENLENEL 169
>gi|17231283|ref|NP_487831.1| ribonuclease D [Nostoc sp. PCC 7120]
gi|17132925|dbj|BAB75490.1| ribonuclease D [Nostoc sp. PCC 7120]
Length = 209
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QL P+ I G+T K LE++ + KV H
Sbjct: 27 IAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIAQGQTAAPNLKKLLEATNVLKVFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L I + + T+IA L R D E
Sbjct: 87 RFDVATLLHHLDIHVQPIFCTKIASKLARTYTNRHGLKD-----------------LVHE 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E+V + W LTE + AA+DVR+L ++ L ++ W LA
Sbjct: 130 LEQVELDKSAQGSDWGNAANLTEAQLSYAANDVRYLLSAQQKLVAMLKREERWELA 185
>gi|335035213|ref|ZP_08528556.1| ribonuclease D [Agrobacterium sp. ATCC 31749]
gi|333793644|gb|EGL64998.1| ribonuclease D [Agrobacterium sp. ATCC 31749]
Length = 388
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P LVD + G + + + + + KV H ++D E +Y G+ H
Sbjct: 37 LCLVQMASPTLEVLVDPLAKGIDLTPMFE-LMANPNVVKVFHAARQDIEIIYHLGGLIPH 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D IS+ L+ Q+ + V++ W+
Sbjct: 96 PIFDTQVAAMVC--------GFGDSISYDQLV----------QKIKNVQIDKSSRFTDWS 137
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ--SLW 222
RPLTE + A DV L +Y + +L ++ SLW
Sbjct: 138 RRPLTEKQLDYALADVTHLRDVYLALKAQLEREGRSLW 175
>gi|167855622|ref|ZP_02478381.1| ribonuclease D [Haemophilus parasuis 29755]
gi|167853249|gb|EDS24504.1| ribonuclease D [Haemophilus parasuis 29755]
Length = 388
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 22/179 (12%)
Query: 49 QLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVI 107
Q VI D E V + L ++QL +YL+D + T L + + KV+
Sbjct: 39 QSVIALDTEFVRTRTYYPKLGLIQLFDGKQVYLIDPL--SITDFSPFTALLTNENVLKVL 96
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
H C D E F ++DTQ+ + +G+ +
Sbjct: 97 HACSEDLEVFQHYFKQLPQPMLDTQVMAGFVG---------------IGISIGFAKLALH 141
Query: 168 YQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
Y E E + R D W RPL+E+ ++ A DV +L IYH + + L ++LW AV
Sbjct: 142 YLEVELDKGASRTD---WLSRPLSEIQLQYACADVWYLLPIYHKLAEDL-AKTLWQTAV 196
>gi|260431736|ref|ZP_05785707.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
gi|260415564|gb|EEX08823.1| 3'-5' exonuclease [Silicibacter lacuscaerulensis ITI-1157]
Length = 204
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 18/171 (10%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ DCE + L H LC++Q++ D + ++ G+T LE+ + K+ H
Sbjct: 19 VVAIDCETMGLNPHRDRLCVIQMSGGDGHSHIVQVEKGQTEAPNLCAMLENPEVLKLFHF 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D ALY FG V T+IA L+ R GL C Q
Sbjct: 79 GRFDIAALYHAFGALAAPVYCTKIASRLVRTYTDRH----------GL---KNLC----Q 121
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
E + + +Q W LTE + AA DV +L + + +L ++
Sbjct: 122 ELLGIDISKQQQMSDWGAETLTEAQLDYAASDVLYLHQLRAALDARLEREG 172
>gi|260436505|ref|ZP_05790475.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
gi|260414379|gb|EEX07675.1| 3'-5' exonuclease [Synechococcus sp. WH 8109]
Length = 225
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 29/210 (13%)
Query: 30 IVTNASQLPAEF------LEPS-SERQL---VIGFDCEGVDLCRHGS--LCIMQLAFPDA 77
++ S PAEF L+ + +ER L + D E + L HG LC++Q+A +
Sbjct: 11 VMAEKSSSPAEFAVFDRDLDAAWTERYLQSPRLAVDTEAMGLI-HGRDRLCLVQIADAED 69
Query: 78 IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSL 137
I G+T K LE+ + KV H + D AL GI+++ V T++ L
Sbjct: 70 RVACVRIGLGQTEAPNLKRLLEAPTVEKVFHFARFDVAALAAGLGIEVNPVFCTKVGSRL 129
Query: 138 IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRA 197
R D + VG+ D + +E LT+ +
Sbjct: 130 GRTYTPRHGLKDLVMELVGVELDKGAQSSDWGRVDE----------------LTDAQLAY 173
Query: 198 AADDVRFLPYIYHNMMKKLNQQSLWYLAVR 227
AA+DVR+L + K L ++ W LA R
Sbjct: 174 AANDVRYLLPARERLEKMLRREGRWDLAQR 203
>gi|149186862|ref|ZP_01865172.1| ribonuclease D [Erythrobacter sp. SD-21]
gi|148829529|gb|EDL47970.1| ribonuclease D [Erythrobacter sp. SD-21]
Length = 411
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A + +D + G + ++ + KV H +D E +Y G H
Sbjct: 43 LCLVQIANEEEAAAIDPLADGIDLQPLWDLLCDNEEVLKVFHAGGQDVEIVYNFTGKTPH 102
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA I + E I + L+ + GI+ + W
Sbjct: 103 PIFDTQIAMMAISQNE--------QIGYANLV--ESWMGITVDKGARF--------TDWG 144
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
RPLT+ + A DV L I+ ++KKL
Sbjct: 145 RRPLTDRQIEYAIGDVTHLSKIFPMILKKL 174
>gi|384171974|ref|YP_005553351.1| putative 3'-5' exonuclease [Arcobacter sp. L]
gi|345471584|dbj|BAK73034.1| putative 3'-5' exonuclease [Arcobacter sp. L]
Length = 220
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGS----LCIMQLAFPDAIYLVD 82
I +V + QL E + S + IGFD E + G +C++QLA D +L+
Sbjct: 29 TIEVVNTSEQL--ENVMNSIQLTPFIGFDSEQKPTFKKGQADNGVCLIQLATKDKCFLIQ 86
Query: 83 AIQGGETVVKACKPA---LESSYITKVIHDCKRDSEALYFQFGIKLHNVVD 130
Q +K KP LE I K+ K D+EAL+ QF +++ +++D
Sbjct: 87 IKQ-----IKNLKPLINFLEDDKIIKIGTGLKGDNEALFKQFNLRVKSMID 132
>gi|444706826|gb|ELW48144.1| Exonuclease 3'-5' domain-containing protein 1 [Tupaia chinensis]
Length = 409
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 72 LAFPDAIYLVDA-IQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVD 130
+A +YL D + G + LE I KVIHDC+ S+ L Q+GI L+NV D
Sbjct: 65 VATNSRVYLFDIFLLGSRAFNNGLQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFD 124
Query: 131 TQ 132
TQ
Sbjct: 125 TQ 126
>gi|407777000|ref|ZP_11124271.1| ribonuclease D [Nitratireductor pacificus pht-3B]
gi|407301165|gb|EKF20286.1| ribonuclease D [Nitratireductor pacificus pht-3B]
Length = 392
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P LVD + + +K + + +TKV H ++D E ++ G+ H
Sbjct: 39 LCLIQMAAPGVTALVDPL-SADIDLKPFFDLMANERVTKVFHAARQDIEIIFHLGGLIPH 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
V D+Q+A ++ D IS+ L++ R G + W
Sbjct: 98 PVFDSQVAATVC--------GFGDSISYDQLVS--RITGAHIDKSSRF--------TDWR 139
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
RPLT+ + A DV L +Y ++ ++L ++
Sbjct: 140 RRPLTDKQLSYALADVTHLIDVYAHLKEELTRE 172
>gi|424910030|ref|ZP_18333407.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392846061|gb|EJA98583.1| ribonuclease D [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 386
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P LVD + G + + + + + KV H ++D E +Y G+ H
Sbjct: 37 LCLVQMASPTLEVLVDPLAKGLDLTPLFE-LMANPDVVKVFHAARQDIEIIYHLGGLIPH 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D IS+ L+ Q+ + V++ W+
Sbjct: 96 PIFDTQVAAMVC--------GFGDSISYDQLV----------QKIKNVQIDKSSRFTDWS 137
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ--SLW 222
RPLTE + A DV L +Y ++ +L ++ SLW
Sbjct: 138 RRPLTEKQLDYALADVTHLRDVYLSLKAQLEREGRSLW 175
>gi|399058750|ref|ZP_10744759.1| ribonuclease D [Novosphingobium sp. AP12]
gi|398040509|gb|EJL33614.1| ribonuclease D [Novosphingobium sp. AP12]
Length = 410
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A + +D + G + ++ + KV H +D E ++ G H
Sbjct: 42 LCLVQIANTEEAAAIDPLAPGLDLKPLWDLLTDNEDVLKVFHAGGQDVEIVFNFTGRTPH 101
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA I + E S + S+ GL D G + + W+
Sbjct: 102 PIFDTQIAMMAISQSEQIGYS-NLVESWQGLTIDK---GARFTD--------------WS 143
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
RPLT+ + A DV L I+ M+K+L
Sbjct: 144 RRPLTDRQIEYAIGDVTHLSKIFPKMLKRL 173
>gi|354568797|ref|ZP_08987959.1| 3'-5' exonuclease [Fischerella sp. JSC-11]
gi|353539602|gb|EHC09086.1| 3'-5' exonuclease [Fischerella sp. JSC-11]
Length = 209
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QL I G+T K LE++ I KV H
Sbjct: 27 IAVDTETMGLIPQRDRLCLVQLCNSQGQVTAIRIAKGQTTAPNLKKLLEATNIVKVFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L + GI ++ V T+IA L R +P + + L E
Sbjct: 87 RFDIATLRYNLGIHVNPVFCTKIASKL-----ARTYTPRHGLKDLVL------------E 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E+V + W LTE + AA+DVR+L + ++ L ++ LA
Sbjct: 130 LEQVELDKSSQSSDWGNAAQLTEAQLSYAANDVRYLLKVQQKLIAMLEREERLQLA 185
>gi|261209844|ref|ZP_05924146.1| ribonuclease D [Vibrio sp. RC341]
gi|260841142|gb|EEX67662.1| ribonuclease D [Vibrio sp. RC341]
Length = 398
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 95 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 146
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 147 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 196
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 197 QAGWWEAALQ 206
>gi|384501951|gb|EIE92442.1| hypothetical protein RO3G_16964 [Rhizopus delemar RA 99-880]
Length = 599
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQL+ + +++D ++ + + + I KV+H
Sbjct: 253 AVDLEHHNYRSYQGFTCLMQLSTRNQDFIIDTLELRDKLWR-LNEYFADPTIVKVLHGAD 311
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L FG+ L N+ DT ++E P ++++ RYC +K
Sbjct: 312 SDVIWLQRDFGLYLVNLFDTYFPTKVLE-------FPHHGLAYLL----KRYCNYDADKK 360
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL + M+ A D FL YIY + +L
Sbjct: 361 YQLAD--------WRIRPLPQEMLMYARADTHFLLYIYDCLRNEL 397
>gi|307177174|gb|EFN66407.1| Exosome component 10 [Camponotus floridanus]
Length = 1189
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 26/192 (13%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ + YL+D + + + I K+ H
Sbjct: 256 AVDLEHHSYRTFQGITCLMQISTVNTDYLIDTL-ALRSELHQLNEIFTKPTILKIFHGA- 313
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D + L+ Q + L+ V ++ + + K+ Y+S LL +YCGI+ +
Sbjct: 314 -DMDILWLQRDLSLYVV-------NMFDTHQAAKQLNLPYLSLAYLLN--KYCGINPNKH 363
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALY 231
++ W RPL E +++ A +D +L +I + +L + + + A+Y
Sbjct: 364 FQL--------ADWRIRPLPEELMKYAREDTHYLLHIKDMLKNELIETANGKSNILKAVY 415
Query: 232 CRCFCINENDYV 243
RC + + YV
Sbjct: 416 DRCTDLCKRTYV 427
>gi|14250912|emb|CAC39261.1| Rrp6p homologue [Trypanosoma brucei]
Length = 703
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 22/166 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C+MQ++ ++VD ++ + P I KV H
Sbjct: 235 IAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRANMY-LMAPVFLQPNIVKVFHGA 293
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L FG+ + N+ DT IA + ++ A +C + +
Sbjct: 294 REDVRWLQKDFGLYIVNLFDTSIALQNL------------HMPHSLAFAVDHFCQVKLNK 341
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
K + W RP+ MV A D FL Y+Y + + L
Sbjct: 342 KYQT--------ADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLL 379
>gi|89052719|ref|YP_508170.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
gi|88862268|gb|ABD53145.1| 3'-5' exonuclease [Jannaschia sp. CCS1]
Length = 203
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 22/168 (13%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
++ DCE + L H LC++QL+ D + + G+T LE K+ H
Sbjct: 19 IVAIDCETMGLHPHRDRLCVIQLSDGDGNAHLVQVAKGQTAAPNLCALLEDPNTLKLFHF 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D A+Y FG V T+IA L+ R+ D LL Q
Sbjct: 79 GRFDIAAMYHAFGALTAPVYCTKIASKLV-------RTYTDRHGLKNLL----------Q 121
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
E + + +Q W LTE V AA DV +L H + KL+
Sbjct: 122 ELLGIDISKQQQSSDWGADSLTEAQVDYAASDVLYL----HGVKDKLD 165
>gi|375264824|ref|YP_005022267.1| ribonuclease D [Vibrio sp. EJY3]
gi|369840148|gb|AEX21292.1| ribonuclease D [Vibrio sp. EJY3]
Length = 388
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQ+ + + G S F L
Sbjct: 86 LKDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQLMAAFL----GHGLST----GFATL 137
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G+ + E R D W RPLT+ + AA DV +L +Y ++ K+
Sbjct: 138 VEE--YLGVELDKSES-----RTD---WMARPLTQKQLDYAAADVHYLLPLYEILLDKVT 187
Query: 218 QQSLWY 223
+ W+
Sbjct: 188 EAGWWH 193
>gi|307102324|gb|EFN50630.1| hypothetical protein CHLNCDRAFT_59476 [Chlorella variabilis]
Length = 680
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G C++QL+ YL+D++ + + P L + I KVIH D+ L FG+
Sbjct: 152 GLTCLVQLSTGSKDYLIDSLALRQDM-HLLAPVLSNPRICKVIHGGGNDAVWLQRDFGLF 210
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
L NV DT+ A ++ + S LL R+CGI + + + R D
Sbjct: 211 LVNVFDTEKACQVLGYHQ---------RSLGALL--QRFCGI----QADKSLGQRAD--- 252
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL+ ++ A DV+ L I + +L
Sbjct: 253 WRRRPLSAELIDYARRDVQHLLTIADRLGHEL 284
>gi|145352778|ref|XP_001420714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580949|gb|ABO99007.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 176
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ + ++VD + V A A + KV+H
Sbjct: 30 AVDLEHHSYRSFKGFTCLMQISTRERDFVVDVLALRSHVRDALGKAFADADKLKVMHGAD 89
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D + L FG+ + + DT A ++E P ++++ YCGI ++
Sbjct: 90 NDVQWLQKDFGMFVSCLFDTGQAARVLE-------LPSKGLAYLL----HHYCGIKANKR 138
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
++ W RPLT+ MV A D L Y++ + + L
Sbjct: 139 FQL--------ADWRLRPLTKEMVEYARGDTHHLLYVHDRLKEALR 176
>gi|85717198|ref|ZP_01048155.1| ribonuclease D [Nitrobacter sp. Nb-311A]
gi|85695978|gb|EAQ33879.1| ribonuclease D [Nitrobacter sp. Nb-311A]
Length = 420
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A PD +DA+ G + + + + + KV H ++D E ++ Q GI H
Sbjct: 77 LCVIQMASPDEAIAIDALAEG-IDLNSFFTLMSNEGVLKVFHAARQDIEIIWHQAGIIPH 135
Query: 127 NVVDTQIA 134
V DTQ+A
Sbjct: 136 PVFDTQVA 143
>gi|255934162|ref|XP_002558362.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582981|emb|CAP81189.1| Pc12g15620 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 756
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 63/167 (37%), Gaps = 22/167 (13%)
Query: 52 IGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D+ HG + +MQ++ D ++VD +Q ++ I KV+H
Sbjct: 244 IAIDLEHHDVHSYHGLVSLMQISTRDKDWVVDTLQPWREDLQMLNEVFADPKILKVLHGS 303
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYIS-FVGLLADPRYCGISYQ 169
D L G+ + + DT A S + KRS +S FV AD RY
Sbjct: 304 TMDIIWLQRDLGLYVVGMFDTFHAASAL---GFPKRSLKFLLSKFVNFEADKRYQTAD-- 358
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL M A D +L YIY + L
Sbjct: 359 ---------------WRARPLPPAMFDYARSDTHYLLYIYDRLRNDL 390
>gi|395790953|ref|ZP_10470412.1| ribonuclease D [Bartonella alsatica IBS 382]
gi|395409249|gb|EJF75848.1| ribonuclease D [Bartonella alsatica IBS 382]
Length = 384
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PDA L+D + + +K+ + I KV H ++D E +Y GI
Sbjct: 40 LCLIQLASPDATVLIDPM-SQDIDLKSFFDLMVDEKIVKVFHAARQDIEIIYHLGGIIPT 98
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA S+ D IS+ ++ R G +Q + R W+
Sbjct: 99 PLFDTQIAGSIC--------GFGDSISYDQIVQ--RCTG--HQLDKSSRF------TDWS 140
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
RPL+E + A DV +L +Y + K+L N++ W
Sbjct: 141 CRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRIHW 178
>gi|356514082|ref|XP_003525736.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 506
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 23/154 (14%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G C+MQ++ ++VD ++ ++ + + KV+H D L FGI
Sbjct: 116 GLTCLMQISTRTEDFIVDTLKLHSSIGPYLREVFKDPSKRKVMHGADNDVVWLQRDFGIY 175
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
+ N+ DT A +++ + R +Y+ F + A+ Y
Sbjct: 176 ICNLFDTHQASKVLKLE----RKSLEYLLCHFCDITANKEYQSAD--------------- 216
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL M+R A +D +L YIY M +L
Sbjct: 217 --WRLRPLPYEMLRYAREDTHYLLYIYDFMRIEL 248
>gi|58697529|ref|ZP_00372780.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
gi|58535998|gb|EAL59702.1| ribonuclease D [Wolbachia endosymbiont of Drosophila simulans]
Length = 284
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 52 IGFDCEGV--DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + +L + L ++Q+++ + ++VDA+ E + K + + ITKV H
Sbjct: 24 IAVDTEFIRNNLIYYPKLSLIQISYGEKSFIVDAL-VPEIDLSFIKKIMLNQGITKVFHS 82
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C++D E+L F + DTQ+A D+I + ++ +Y GI+
Sbjct: 83 CRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYH-------DFIGYSKVV--EQYQGIALD 133
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLWY 223
+ ++ W RPL+E + A +DV L +Y + KL N + W+
Sbjct: 134 K-------IKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWF 182
>gi|395766735|ref|ZP_10447273.1| ribonuclease D [Bartonella doshiae NCTC 12862]
gi|395415347|gb|EJF81781.1| ribonuclease D [Bartonella doshiae NCTC 12862]
Length = 383
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A PD L+D + + +K + I KV H ++D E +Y GI +
Sbjct: 39 LCLIQIASPDITMLIDPM-ASDIDLKPFFDLMIDKRIVKVFHAARQDIEIIYHLGGIIPY 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+ DTQIA S+ D IS+ ++ + C + +K +F
Sbjct: 98 PLFDTQIAGSIC--------GFGDSISYEQIV---QRCTGHHLDKSS---------RFTD 137
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
W+ RPL+E + A DV +L +Y + +KL N+++ W
Sbjct: 138 WSCRPLSEKQLLYALADVTYLRDVYLLLKQKLEKNKRTHW 177
>gi|417860412|ref|ZP_12505468.1| ribonuclease D [Agrobacterium tumefaciens F2]
gi|338823476|gb|EGP57444.1| ribonuclease D [Agrobacterium tumefaciens F2]
Length = 386
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P LVD + G + + + + + KV H ++D E +Y G+ H
Sbjct: 37 LCLVQMASPTLEVLVDPLAKGLDLTPLFE-LMANPNVVKVFHAARQDIEIIYHLGGLIPH 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D IS+ L+ Q+ + V++ W+
Sbjct: 96 PIFDTQVAAMVC--------GFGDSISYDQLV----------QKIKNVQIDKSSRFTDWS 137
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ--SLW 222
RPLTE + A DV L +Y + +L ++ SLW
Sbjct: 138 RRPLTEKQLDYALADVTHLRDVYLALKAQLEREGRSLW 175
>gi|72387778|ref|XP_844313.1| ribosomal RNA processing protein 6 [Trypanosoma brucei TREU927]
gi|62359465|gb|AAX79902.1| ribosomal RNA processing protein 6 [Trypanosoma brucei]
gi|70800846|gb|AAZ10754.1| ribosomal RNA processing protein 6 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 736
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 22/166 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C+MQ++ ++VD ++ + P I KV H
Sbjct: 268 IAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRANMY-LMAPVFLQPNIVKVFHGA 326
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L FG+ + N+ DT IA + ++ A +C + +
Sbjct: 327 REDVRWLQKDFGLYIVNLFDTSIALQNL------------HMPHSLAFAVDHFCQVKLNK 374
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
K + W RP+ MV A D FL Y+Y + + L
Sbjct: 375 KYQT--------ADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLL 412
>gi|428300344|ref|YP_007138650.1| 3'-5' exonuclease [Calothrix sp. PCC 6303]
gi|428236888|gb|AFZ02678.1| 3'-5' exonuclease [Calothrix sp. PCC 6303]
Length = 209
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 69/179 (38%), Gaps = 23/179 (12%)
Query: 51 VIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + L + LC++QL PD V + G+T K LE+ I KV H
Sbjct: 26 AIAVDTETMGLIPQRDRLCLVQLCNPDGNVTVIRVAKGQTAAPNLKKLLEAENIVKVFHF 85
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D L I + V T+IA L R G+
Sbjct: 86 ARFDLATLRRYLDIFVQPVFCTKIASKLARTYTNRH-------------------GLKDL 126
Query: 170 EKEEVRVLLRQDPQ---FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
KE +V L + Q + L++ + AA+DVR+L +M L ++ W LA
Sbjct: 127 IKELEKVELDKTAQSSDWGNAANLSDEQLSYAANDVRYLLGARQKLMSMLQREERWQLA 185
>gi|356514039|ref|XP_003525715.1| PREDICTED: exosome component 10-like [Glycine max]
Length = 877
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 23/155 (14%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G C+MQ++ ++VD ++ + + + KV+H RD L FGI
Sbjct: 287 QGLTCLMQISTRTEDFVVDTLKLRIHIGPYLREIFKDPAKRKVMHGADRDIVWLQRDFGI 346
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQD 181
+ N+ DT A L+ +R+ ++I F + A+ Y
Sbjct: 347 YICNLFDTHQASKLL----NLERNSLEHILHHFCEVTANKEYQNAD-------------- 388
Query: 182 PQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL M+R A +D +L YIY M +L
Sbjct: 389 ---WRLRPLPNEMLRYAREDTHYLLYIYDLMRIRL 420
>gi|300024345|ref|YP_003756956.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
gi|299526166|gb|ADJ24635.1| ribonuclease D [Hyphomicrobium denitrificans ATCC 51888]
Length = 384
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA P+A +VD + G + ++S + KV H ++D E ++ + G+
Sbjct: 39 LCLIQLAGPEAEAIVDPLAPGLDLAPFYHLMADTSTV-KVFHAARQDIEIVFLKSGVVPT 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
V D+Q+A + D IS+V L+ K+ L + +F
Sbjct: 98 PVFDSQVAAMVC--------GFGDSISYVNLV------------KKTTGADLDKSSRFTD 137
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W+ RPL+ + A DV +L +Y + + L++
Sbjct: 138 WSRRPLSPKQLDYALADVTYLRDVYQRLRQTLDK 171
>gi|344273945|ref|XP_003408779.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
[Loxodonta africana]
Length = 619
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDL-CRHGSLC 68
SS P + ++ +VT + + + EP + +L V+GFDCE V+L R L
Sbjct: 61 SSAPRASWEERILQAKVVTVSQEEEWDQTEPLLKSELEDFPVLGFDCEWVNLEGRVSPLS 120
Query: 69 IMQLAFPDAI----YLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P + L I+GG+T+ + L I KV C D+ L +G+
Sbjct: 121 LLQMASPSGLCVLLRLPKLIRGGKTLPRTLLDILADGNILKVGVGCSEDASKLLEDYGLV 180
Query: 125 LHNVVD 130
+ +D
Sbjct: 181 VKGYLD 186
>gi|254286913|ref|ZP_04961865.1| ribonuclease D [Vibrio cholerae AM-19226]
gi|150423063|gb|EDN15012.1| ribonuclease D [Vibrio cholerae AM-19226]
Length = 381
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 179
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 180 QAGWWEAALQ 189
>gi|424659683|ref|ZP_18096932.1| ribonuclease D [Vibrio cholerae HE-16]
gi|408051501|gb|EKG86583.1| ribonuclease D [Vibrio cholerae HE-16]
Length = 381
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 179
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 180 QAGWWEAALQ 189
>gi|149912958|ref|ZP_01901492.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
gi|149813364|gb|EDM73190.1| exonuclease, putative [Roseobacter sp. AzwK-3b]
Length = 203
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 22/169 (13%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ DCE + L H LC++Q++ D + I G+T LE+ I K+ H
Sbjct: 19 VVAIDCETMGLNPHRDRLCVVQMSGGDGNAYLVQIDKGQTEAPNLAALLENPDILKLFHF 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D A++ FG V T+IA L+ R+ D L+ Q
Sbjct: 79 GRFDIAAMFNAFGALAAPVYCTKIASKLV-------RTYTDRHGLKNLM----------Q 121
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
E + + +Q W LTE + AA DV +L H + +LN+
Sbjct: 122 ELLDKDISKQQQSSDWGAPKLTEAQLDYAASDVLYL----HQLRDELNR 166
>gi|402827465|ref|ZP_10876521.1| ribonuclease D [Sphingomonas sp. LH128]
gi|402258969|gb|EJU09276.1| ribonuclease D [Sphingomonas sp. LH128]
Length = 397
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A + +D + G + ++ + KV H +D E ++ G H
Sbjct: 42 LCLVQIANTEEAAAIDPLADGLDMTPLLDLLTQNEDVLKVFHAGGQDVEIIFNFTGRTPH 101
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA I + E S + S+ GL D G + + W+
Sbjct: 102 PIFDTQIAMMAISQSEQIGYS-NLVESWQGLTIDK---GARFTD--------------WS 143
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
RPLT+ + A DV L I+ ++K+L
Sbjct: 144 RRPLTDRQIEYAIGDVTHLSKIFPKILKRL 173
>gi|37679238|ref|NP_933847.1| ribonuclease D [Vibrio vulnificus YJ016]
gi|37197981|dbj|BAC93818.1| ribonuclease D [Vibrio vulnificus YJ016]
Length = 390
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 49/218 (22%)
Query: 37 LPAEF------LEPSSERQLVIGFDCEGVDLCR-----------------------HGSL 67
+PAEF + SER++ E DL R + L
Sbjct: 1 MPAEFQGWHFYFQSDSERRVNYQIITENQDLARVCSKAREADVVMLDTEFVRTRTYYPQL 60
Query: 68 CIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHN 127
++QL D++ L+D T + A L + + KV+H C D E + FG
Sbjct: 61 GLIQLFDGDSLSLIDPTVL--TDMSAFTELLNDASVMKVLHACGEDLEVFHNAFGAMPVP 118
Query: 128 VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTY 187
+VDTQI + + G S F L+ +Y + + E R D W
Sbjct: 119 MVDTQIMAAFL----GHGLS----TGFAALV--EQYLNVELDKSES-----RTD---WLA 160
Query: 188 RPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
RPL++ + AA DV +L +Y +++K+ W A
Sbjct: 161 RPLSDKQLEYAAADVHYLLPLYEILLEKVMAAGWWQAA 198
>gi|347967577|ref|XP_312669.5| AGAP002300-PA [Anopheles gambiae str. PEST]
gi|333468393|gb|EAA07463.5| AGAP002300-PA [Anopheles gambiae str. PEST]
Length = 992
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 23/192 (11%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ 85
P+ V SQL E + +++ I + G C+MQL+ Y+VDA+
Sbjct: 268 TPLMYVDQESQLAELVRELQAAKEIAIDLEHHSY-RSYQGFTCLMQLSTRTKDYIVDAL- 325
Query: 86 GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
+ KV+H D E L G+ L N+ DT A +++
Sbjct: 326 ALRDELHVLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMFDTGEAARVLQ------ 379
Query: 146 RSPDDYISFVGL-LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
S +GL YC I + ++ W RP+ E + A D +
Sbjct: 380 ------FSRIGLQFLLKHYCNIDTDKAFQL--------ADWRIRPIPENFIEYARKDTHY 425
Query: 205 LPYIYHNMMKKL 216
L YIY M +L
Sbjct: 426 LLYIYDRMRNEL 437
>gi|408792447|ref|ZP_11204057.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408463857|gb|EKJ87582.1| 3'-5' exonuclease [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 212
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 80/205 (39%), Gaps = 34/205 (16%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+ DCE + L R LC++Q++ + I G+ + ES ITK+ H
Sbjct: 31 LAVDCEMMGLNPRRDRLCVVQISDSKNKVALVQILPGQKEAPHIQKLFESKEITKIFHFA 90
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L + GIK+ NV T+I L R+ D L+ +E
Sbjct: 91 RMDMTFLRARLGIKVQNVFCTKIGSKL-------ARTYTDKHGLKELI----------RE 133
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF---LPYIYHNMMKKLNQQSLWYLAVR 227
E + + W + LT+ V A+ DVRF L I MM + N R
Sbjct: 134 FFEENIDKKNQSSDWGKKILTKDQVDYASTDVRFLIALESILTEMMIREN---------R 184
Query: 228 GALYCRCFCINEN----DYVDWPPL 248
AL RCF E D ++ P L
Sbjct: 185 FALAERCFGFLETQVELDLLEVPNL 209
>gi|326477901|gb|EGE01911.1| exosome complex exonuclease Rrp6 [Trichophyton equinum CBS 127.97]
Length = 824
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 29/158 (18%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
HG +C+MQ++ + ++VD ++ ++ I KV+H D L G+
Sbjct: 278 HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGL 337
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLADPRYCGISYQEKEEVRVLL 178
L + DT A S ++ P + F VG AD +Y
Sbjct: 338 YLVGLFDTFHAASALQ-------LPKKSLKFLLHEYVGFDADKQYQTAD----------- 379
Query: 179 RQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL M+ A D FL YI+ + +L
Sbjct: 380 ------WRIRPLLAGMLDYARSDTHFLLYIFDRLRNQL 411
>gi|261327471|emb|CBH10446.1| ribosomal RNA processing protein 6, putative [Trypanosoma brucei
gambiense DAL972]
Length = 738
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 63/166 (37%), Gaps = 22/166 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E D + G C+MQ++ ++VD ++ + P I KV H
Sbjct: 268 IAVDLEHHDFYSYQGFTCLMQISTRTQDFIVDCLKVRANMY-LMAPVFLQPNIVKVFHGA 326
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L FG+ + N+ DT IA + ++ A +C + +
Sbjct: 327 REDVRWLQKDFGLYIVNLFDTSIALQNL------------HMPHSLAFAVDHFCQVKLNK 374
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
K + W RP+ MV A D FL Y+Y + + L
Sbjct: 375 KYQT--------ADWRVRPIPAEMVSYAQQDTHFLLYVYDRLKQLL 412
>gi|406894045|gb|EKD38950.1| hypothetical protein ACD_75C00553G0006 [uncultured bacterium]
Length = 378
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 22/157 (14%)
Query: 51 VIGFDCEGV-DLCRHGSLCIMQLAFPDA-IYLVDAIQGGETVVKACKPALESSYITKVIH 108
+ D E V + + L ++Q+A D YL+D + ++A L + K++H
Sbjct: 26 AVALDTEFVWERTYYPQLGLIQIALSDEDCYLIDPVAVKN--LQALGQLLSDRGVVKILH 83
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
D +D L G N+ DT++A G P +S L+ + +S
Sbjct: 84 DAPQDLAILQRATGATPQNIFDTRLA-------AGFSNLPA-TLSLGNLVKELLDIELS- 134
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
KEE R W RPLTE VR A DDVR+L
Sbjct: 135 --KEETRT-------NWLQRPLTEEQVRYALDDVRYL 162
>gi|391347098|ref|XP_003747802.1| PREDICTED: exosome component 10-like [Metaseiulus occidentalis]
Length = 867
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 30/221 (13%)
Query: 18 DGKPIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDA 77
+ KP+ P+ +V+ L E RQ+ I + G C++Q++ D
Sbjct: 242 ETKPLGET-PLELVSTPGALKKVLEELKQHRQIAIDLEHHSFR-SFMGFTCLVQVSTWDK 299
Query: 78 IYLVD--AIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAY 135
Y++D ++G V+ I KV+H D + L FG+ + N+ DT IA
Sbjct: 300 DYIIDPLELRGHLHVLNEVTT---DPKIVKVLHGSHSDVQWLQRDFGVYIVNLFDTGIAA 356
Query: 136 SLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTEL 193
L+ +R Y+ F + +D R+ + W RPL +
Sbjct: 357 KLL----NYERLSLSYLLKKFEQVESDKRFQLVD-----------------WRIRPLPKE 395
Query: 194 MVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRC 234
M+ A D +L I + ++LN S + A++ R
Sbjct: 396 MIEYARTDTHYLLSICEKLKEELNNASNEAGNLMKAVWQRS 436
>gi|422909743|ref|ZP_16944386.1| ribonuclease D [Vibrio cholerae HE-09]
gi|341634503|gb|EGS59261.1| ribonuclease D [Vibrio cholerae HE-09]
Length = 373
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 122 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 171
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 172 QAGWWEAALQ 181
>gi|310794900|gb|EFQ30361.1| 3'-5' exonuclease [Glomerella graminicola M1.001]
Length = 199
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 87 GETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQI 133
G +A + LES ITKV D + DS+AL+ FGIKL V D Q+
Sbjct: 26 GYKSNQALQSVLESPKITKVFFDVRNDSDALFAHFGIKLDGVQDLQL 72
>gi|170770112|ref|ZP_02904565.1| ribonuclease D [Escherichia albertii TW07627]
gi|170121069|gb|EDS90000.1| ribonuclease D [Escherichia albertii TW07627]
Length = 375
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 97/268 (36%), Gaps = 53/268 (19%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E V + L ++QL + + L+D + G T K L ITK +H
Sbjct: 24 AIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPL--GITDWSPLKAILRDPSITKFLHA 81
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
D E FG ++DTQI + GR S F ++ + Y G++
Sbjct: 82 GSEDLEVFLNVFGELPQPLIDTQILAAFC----GRPMS----WGFASMVEE--YSGVTLD 131
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
+ E R D W RPLTE AA DVR+L I +M + + S W A
Sbjct: 132 KSES-----RTD---WLARPLTERQCEYAAADVRYLLPITTKLMAE-TEASGWLPAALDE 182
Query: 230 LYCRCFCINENDYV---------------------------DWPPLPPVPDYLIVEGDVP 262
CR I + + DW L V V
Sbjct: 183 --CRLMQIRRQEVLAPEEAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 240
Query: 263 EEEILSILDVPPGKMGRI--IGRRGSSI 288
EE + S+ PG +G + +G GS I
Sbjct: 241 EEHLWSVARYMPGSLGELDSLGLSGSEI 268
>gi|320157018|ref|YP_004189397.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
gi|319932330|gb|ADV87194.1| ribonuclease D [Vibrio vulnificus MO6-24/O]
Length = 390
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 85/218 (38%), Gaps = 49/218 (22%)
Query: 37 LPAEF------LEPSSERQLVIGFDCEGVDLCR-----------------------HGSL 67
+PAEF + SER++ E DL R + L
Sbjct: 1 MPAEFQGWHFYFQSDSERRVNYQIITENQDLVRVCSKAREADVVMLDTEFVRTRTYYPQL 60
Query: 68 CIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHN 127
++QL D + L+D T + A L + + KV+H C D E + FG
Sbjct: 61 GLIQLFDGDTLSLIDPTVL--TDMSAFTELLNDASVMKVLHACGEDLEVFHNAFGAIPVP 118
Query: 128 VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTY 187
+VDTQI + + G S F L+ +Y + + E R D W
Sbjct: 119 MVDTQIMAAFL----GHGLS----TGFAALV--EQYLNVELDKSES-----RTD---WLA 160
Query: 188 RPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
RPL++ + AA DV +L +Y +++K+ + W A
Sbjct: 161 RPLSDKQLEYAAADVHYLLPLYEILLEKVMEAGWWQAA 198
>gi|402490875|ref|ZP_10837664.1| 3'-5' exonuclease [Rhizobium sp. CCGE 510]
gi|401810901|gb|EJT03274.1| 3'-5' exonuclease [Rhizobium sp. CCGE 510]
Length = 208
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 65/172 (37%), Gaps = 22/172 (12%)
Query: 51 VIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + L R LC++QL+ D V I G+ LE K+ H
Sbjct: 23 AIAIDTETLGLVPRRDRLCVVQLSPGDGTADVIRIAAGQKEAPNLVALLEDPTHQKIFHY 82
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D L+ FG+ V T+IA LI R D+ +
Sbjct: 83 GRFDIAVLFHTFGVTTTPVFCTKIASRLIRTYTDRHGLKDN-----------------LK 125
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
E +V V Q W PL++ + AA DV +L H + KL ++ L
Sbjct: 126 EMLDVDVSKAQQSSDWAAEPLSQAQLEYAASDVLYL----HALRDKLTERLL 173
>gi|58698273|ref|ZP_00373191.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
gi|225630014|ref|YP_002726805.1| Ribonuclease D [Wolbachia sp. wRi]
gi|225677056|ref|ZP_03788062.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|58535197|gb|EAL59278.1| ribonuclease D [Wolbachia endosymbiont of Drosophila ananassae]
gi|225590902|gb|EEH12123.1| Ribonuclease D [Wolbachia endosymbiont of Muscidifurax uniraptor]
gi|225591995|gb|ACN95014.1| Ribonuclease D [Wolbachia sp. wRi]
Length = 392
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 52 IGFDCEGV--DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + +L + L ++Q+++ + ++VDA+ E + K + + ITKV H
Sbjct: 24 IAVDTEFIRNNLIYYPKLSLIQISYGEKSFIVDAL-VPEIDLSFIKKIMLNQGITKVFHS 82
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C++D E+L F + DTQ+A D+I + ++ +Y GI+
Sbjct: 83 CRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYH-------DFIGYSKVV--EQYQGIALD 133
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLWY 223
+ ++ W RPL+E + A +DV L +Y + KL N + W+
Sbjct: 134 K-------IKAKNSDWLRRPLSEDQLDYAVNDVVHLYDLYQILCNKLEENNRMGWF 182
>gi|354724173|ref|ZP_09038388.1| ribonuclease D [Enterobacter mori LMG 25706]
Length = 375
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 99/272 (36%), Gaps = 61/272 (22%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E V + L ++Q+ + L+D + G T + L + +TK +H
Sbjct: 24 AIALDTEFVRTRTYYPQLGLIQMYDGKHVSLIDPL--GITDWAPMRELLLDTAVTKFLHA 81
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
D E FGI ++DTQI + GR S F ++ + Y G++
Sbjct: 82 GSEDLEVFMNTFGIMPQPLIDTQILAAF----SGRPLS----WGFAAMVEE--YTGLTLD 131
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK--------------- 214
+ E R D W RPLTE + AA DV +L I +MK
Sbjct: 132 KSES-----RTD---WLARPLTERQLEYAAADVFYLLPIAGQLMKEAEASGWLSAALDEC 183
Query: 215 KLNQQ----------------SLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVE 258
++ QQ + W L R L C DW L V
Sbjct: 184 RMTQQRRQEVVDPKEAWRDITNAWQLRTR-QLACLQLL------ADWRLRKARERDLAVN 236
Query: 259 GDVPEEEILSILDVPPGKMGRI--IGRRGSSI 288
V EE + ++ PG MG + IG GS I
Sbjct: 237 FVVREEHLWAVARYMPGSMGELDSIGLSGSEI 268
>gi|71065355|ref|YP_264082.1| ribonuclease D [Psychrobacter arcticus 273-4]
gi|71038340|gb|AAZ18648.1| putative ribonuclease D [Psychrobacter arcticus 273-4]
Length = 432
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 43/167 (25%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVI--------HDCKRDSEALY 118
L ++QL + +YL+DA P L+ S + + + H C D Y
Sbjct: 88 LALVQLNTGNHVYLLDA------------PQLQLSELWQALIKVDVAIWHACGEDLGIFY 135
Query: 119 FQFGIK-LHNVVDTQIAYSLI--EEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVR 175
G L N+ DTQIA S + + Q G +++ D E+ ++
Sbjct: 136 LLSGCPPLTNIFDTQIALSYLTGQLQMGYQQALD--------------------EQLDMH 175
Query: 176 VLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
+ Q W RPL++ + A DDVRFLP +Y ++ L Q L+
Sbjct: 176 IDKEQSQSDWLQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQGLY 222
>gi|311279296|ref|YP_003941527.1| ribonuclease D [Enterobacter cloacae SCF1]
gi|308748491|gb|ADO48243.1| ribonuclease D [Enterobacter cloacae SCF1]
Length = 386
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 92/255 (36%), Gaps = 60/255 (23%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
L ++Q+ D++ L+D + T + L +TK +H D E FG+
Sbjct: 50 LGLIQMYDGDSVVLIDPLS--ITDWTPFRDLLLDGAVTKYLHAGSEDLEVFLNTFGVLPE 107
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
++DTQI + GR S F ++ + Y GI+ + E R D W
Sbjct: 108 PLIDTQILAAFC----GRPMS----WGFAAMVEE--YTGIALDKSES-----RTD---WL 149
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMK---------------KLNQQ------------ 219
RPLTE AA DV +L I H +M +L QQ
Sbjct: 150 ARPLTERQCDYAAADVWYLLPIAHKLMAETEASGWLPAALDECRLMQQRRREVVSPSEAW 209
Query: 220 ----SLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPG 275
+ W L R R DW L V V EE + S+ PG
Sbjct: 210 RDISNAWQLRTRQLACLRLLA-------DWRLRKARERDLAVNFVVREEHLWSVARYMPG 262
Query: 276 KMGRI--IGRRGSSI 288
MG + +G GS I
Sbjct: 263 SMGELDSLGLSGSEI 277
>gi|99034557|ref|ZP_01314528.1| hypothetical protein Wendoof_01000660 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 409
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 21/198 (10%)
Query: 30 IVTNASQLPAEFLEPSSERQLVIGFDCEGV--DLCRHGSLCIMQLAFPDAIYLVDAIQGG 87
+++ S+L E +++ I D E + +L + L ++Q+++ + ++VD +
Sbjct: 19 LISTTSELENTCEELIAKKPKFIAVDTEFIRNNLIYYPKLSLIQISYGEKSFIVDTL-VP 77
Query: 88 ETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRS 147
E + K + + ITKV H C++D E+L F + DTQ+A
Sbjct: 78 EIDLSFIKKIMLNQGITKVFHSCRQDIESLLTVFKCIPTPIFDTQVAAMFCHYYH----- 132
Query: 148 PDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207
D+I + ++ +Y GI+ + ++ W RPL+E + A +DV L
Sbjct: 133 --DFIGYSKVV--EQYQGIALDK-------IKAKNSDWLRRPLSEDQLDYAVNDVVHLYD 181
Query: 208 IYHNMMKKL--NQQSLWY 223
+Y + KL N + W+
Sbjct: 182 LYQILCNKLEENNRMGWF 199
>gi|145520595|ref|XP_001446153.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413630|emb|CAK78756.1| unnamed protein product [Paramecium tetraurelia]
Length = 1331
Score = 42.7 bits (99), Expect = 0.21, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 23/117 (19%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLA-------------FPDAIYLVDAIQGGETVVKACKPAL 98
IG D EG R G + ++Q+ A YL + E ++ + L
Sbjct: 845 IGIDLEG--QLRKGDIWLVQMGVMVENLRIIFIFDLMKAKYLEADLVFHEQMLSVIRSIL 902
Query: 99 ESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIE-------EQEGRKRSP 148
E I KV HDCKRDS+AL+ I N+ DT Y +E EQ+ K++P
Sbjct: 903 EDEGICKVFHDCKRDSQALHIN-QICPRNIADTSSTYIFLESLKLNDQEQKKVKKNP 958
>gi|153217090|ref|ZP_01950854.1| ribonuclease D [Vibrio cholerae 1587]
gi|124113892|gb|EAY32712.1| ribonuclease D [Vibrio cholerae 1587]
Length = 381
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 179
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 180 QAGWWDAALQ 189
>gi|332709748|ref|ZP_08429707.1| ribonuclease D [Moorea producens 3L]
gi|332351575|gb|EGJ31156.1| ribonuclease D [Moorea producens 3L]
Length = 216
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 72/182 (39%), Gaps = 31/182 (17%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+ D E + L + LC++QL P I G+T K LE++ + KV H
Sbjct: 34 LAVDTETMGLIYQRDRLCLVQLCDPQGRVTFVRIDKGQTEAPRLKQLLEATNVLKVFHFA 93
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L GI ++ V T+IA L Y S GL
Sbjct: 94 RFDVAMLRQNLGIDVNPVFCTKIASKLART----------YTSSHGL------------- 130
Query: 171 KEEVRVLLR-------QDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWY 223
KE V+ L R Q + L++ + AA+DVR+L + ++ L ++ W
Sbjct: 131 KELVKELERIDLDKSAQSSDWGNVANLSDQQLEYAANDVRYLLNVRQKLINMLEREDRWE 190
Query: 224 LA 225
LA
Sbjct: 191 LA 192
>gi|395521908|ref|XP_003765056.1| PREDICTED: exosome component 10 [Sarcophilus harrisii]
Length = 992
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 26/165 (15%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
G+DL H G C+MQ++ +++D ++ + + I KV H
Sbjct: 418 GIDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLEL-RCDLYILNESFTDPAIVKVFHGAD 476
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A ++ GR S D + YC + ++
Sbjct: 477 MDIEWLQKDFGLYVVNMFDTHQAARIL--NLGR-HSLDHLLKL--------YCNVETNKQ 525
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ W RPL E M A D +L YIY M L
Sbjct: 526 YQLAD--------WRIRPLPEEMFNYARHDTHYLLYIYDKMRSDL 562
>gi|359684501|ref|ZP_09254502.1| ribonuclease D [Leptospira santarosai str. 2000030832]
gi|410449393|ref|ZP_11303448.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
gi|410016618|gb|EKO78695.1| 3'-5' exonuclease [Leptospira sp. Fiocruz LV3954]
Length = 388
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
+C++Q++ Y++D ++ + E+ I K+ H D +AL FG +
Sbjct: 43 SKVCLIQISAKGKNYILDPLKLRN--LDGLGTLFENKKILKIFHSAIDDIKALKKDFGFQ 100
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
N+ DT + L++ ++ DY Y I +KE+
Sbjct: 101 FQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSKKEQ--------KSN 141
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
W RPL + ++ AA D +L I+ M +L +++L+ A+
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWEKMKDELIKRNLYEEAL 183
>gi|326473059|gb|EGD97068.1| hypothetical protein TESG_04488 [Trichophyton tonsurans CBS 112818]
Length = 898
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 67/177 (37%), Gaps = 32/177 (18%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
HG +C+MQ++ + ++VD ++ ++ I KV+H D L G+
Sbjct: 268 HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGL 327
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLADPRYCGISYQEKEEVRVLL 178
L + DT A S ++ P + F VG AD +Y
Sbjct: 328 YLVGLFDTFHAASALQ-------LPKKSLKFLLHEYVGFDADKQYQTAD----------- 369
Query: 179 RQDPQFWTYRPLTELMVRAAADDVRFLPYIY---HNMMKKLNQQSLWYLAVRGALYC 232
W RPL M+ A D FL YI+ N + L +S + R A+ C
Sbjct: 370 ------WRIRPLLAGMLDYARSDTHFLLYIFDRLRNQLLDLPSESGFGAGGREAIDC 420
>gi|410862214|ref|YP_006977448.1| ribonuclease D [Alteromonas macleodii AltDE1]
gi|410819476|gb|AFV86093.1| ribonuclease D [Alteromonas macleodii AltDE1]
Length = 323
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPD-DYISFVG 156
LE++ + KV+H C D EA F V DTQIA S+++ P Y V
Sbjct: 8 LENTEVVKVLHSCSEDLEAFLTAFDTVPTPVFDTQIAGSILD------MGPSLGYAKLVE 61
Query: 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
LL C IS + E R D W RPL E + AA+DV +L Y +
Sbjct: 62 LL-----CEISLDKGES-----RTD---WLARPLREAQLSYAANDVLYLLPCYQQL 104
>gi|229521896|ref|ZP_04411313.1| ribonuclease D [Vibrio cholerae TM 11079-80]
gi|422917834|ref|ZP_16952152.1| ribonuclease D [Vibrio cholerae HC-02A1]
gi|423735661|ref|ZP_17708857.1| ribonuclease D [Vibrio cholerae HC-41B1]
gi|229340821|gb|EEO05826.1| ribonuclease D [Vibrio cholerae TM 11079-80]
gi|341636716|gb|EGS61410.1| ribonuclease D [Vibrio cholerae HC-02A1]
gi|408629670|gb|EKL02346.1| ribonuclease D [Vibrio cholerae HC-41B1]
Length = 381
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 179
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 180 QAGWWDAALQ 189
>gi|297579488|ref|ZP_06941416.1| ribonuclease D [Vibrio cholerae RC385]
gi|297537082|gb|EFH75915.1| ribonuclease D [Vibrio cholerae RC385]
Length = 381
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 179
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 180 QAGWWDAALQ 189
>gi|254431401|ref|ZP_05045104.1| RNAse D protein [Cyanobium sp. PCC 7001]
gi|197625854|gb|EDY38413.1| RNAse D protein [Cyanobium sp. PCC 7001]
Length = 224
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 71/179 (39%), Gaps = 19/179 (10%)
Query: 51 VIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIH 108
+ D E + L HG LC++Q+ ++ G++ + +E++ I KV H
Sbjct: 35 ALAVDTEAMGLI-HGRDRLCLVQICDDADNVCCIRLRRGQSSAPHLQALMENAAIEKVFH 93
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
+ D AL GI +H + T+I L R D VG+ D R +
Sbjct: 94 FARFDVAALAENLGIAVHPIFCTKIGSRLARTYSPRHGLKDVVQELVGVELDKRAQSSDW 153
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVR 227
E ++ L+E + AA DVR+L + + L ++ W LA R
Sbjct: 154 GEVDD----------------LSEAQLAYAAGDVRYLLQARDRLERMLRREERWELAQR 196
>gi|347967581|ref|XP_003436085.1| AGAP002300-PB [Anopheles gambiae str. PEST]
gi|333468394|gb|EGK96928.1| AGAP002300-PB [Anopheles gambiae str. PEST]
Length = 988
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 23/192 (11%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQ 85
P+ V SQL E + +++ I + G C+MQL+ Y+VDA+
Sbjct: 264 TPLMYVDQESQLAELVRELQAAKEIAIDLEHHSY-RSYQGFTCLMQLSTRTKDYIVDAL- 321
Query: 86 GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
+ KV+H D E L G+ L N+ DT A +++
Sbjct: 322 ALRDELHVLNEVFTDPKKLKVLHGSVSDIEWLQRDLGLYLVNMFDTGEAARVLQ------ 375
Query: 146 RSPDDYISFVGL-LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
S +GL YC I + ++ W RP+ E + A D +
Sbjct: 376 ------FSRIGLQFLLKHYCNIDTDKAFQL--------ADWRIRPIPENFIEYARKDTHY 421
Query: 205 LPYIYHNMMKKL 216
L YIY M +L
Sbjct: 422 LLYIYDRMRNEL 433
>gi|153826834|ref|ZP_01979501.1| ribonuclease D [Vibrio cholerae MZO-2]
gi|149739355|gb|EDM53601.1| ribonuclease D [Vibrio cholerae MZO-2]
Length = 381
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 179
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 180 QAGWWDAALQ 189
>gi|356514085|ref|XP_003525737.1| PREDICTED: LOW QUALITY PROTEIN: exosome component 10-like [Glycine
max]
Length = 429
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G C+MQ++ ++VD ++ ++ + + KV+H D L FGI
Sbjct: 110 GLTCLMQISTRTEDFIVDTLKLHSSIGPYLREVFKDLSNRKVMHGADNDVMWLQRDFGIY 169
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
+ N+ DT A +++ + R Y+ F + A+ Y
Sbjct: 170 ICNLFDTHQASKVLKLE----RRSLKYLLCHFCDITANKEYQSAD--------------- 210
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL MVR A +D +L YIY M +L
Sbjct: 211 --WRLRPLPYEMVRYAREDTHYLLYIYDLMRIEL 242
>gi|312882473|ref|ZP_07742214.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369873|gb|EFP97384.1| ribonuclease D [Vibrio caribbenthicus ATCC BAA-2122]
Length = 346
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 18/128 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + KV+H C D E + FG H +VDTQ+ + + G S F L
Sbjct: 45 LKDPSVLKVLHACGEDLEVFHNSFGCLPHPMVDTQLMAAFL----GHGLS----TGFAAL 96
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ +Y + + E R D W RPLT+ + AA DV +L ++ +++K+
Sbjct: 97 V--EQYLEVELDKSES-----RTD---WLARPLTQKQLDYAAADVFYLKPLFSLLLEKIE 146
Query: 218 QQSLWYLA 225
Q W A
Sbjct: 147 QVGWWKAA 154
>gi|229523996|ref|ZP_04413401.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
gi|229337577|gb|EEO02594.1| ribonuclease D [Vibrio cholerae bv. albensis VL426]
Length = 381
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 179
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 180 QAGWWDAALQ 189
>gi|260768989|ref|ZP_05877923.1| ribonuclease D [Vibrio furnissii CIP 102972]
gi|260617019|gb|EEX42204.1| ribonuclease D [Vibrio furnissii CIP 102972]
Length = 397
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 21/176 (11%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + L ++QL + + L+D + E + L+ + + KV+H
Sbjct: 50 VVMLDTEFVRTRTFYPQLGLIQLFDGENLSLIDPLAMDE--MTPFVELLQDTSVLKVLHA 107
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E FG +VDTQI + + G S F L D +
Sbjct: 108 CGEDIEVFKTSFGCVPFPMVDTQIMAAFL----GYGLS----TGFAALAHDLLNVELDKS 159
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E R D W RPL++ + AA DV +L +Y +++K+ Q W A
Sbjct: 160 ES-------RTD---WLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAA 205
>gi|254466427|ref|ZP_05079838.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
gi|206687335|gb|EDZ47817.1| 3'-5' exonuclease [Rhodobacterales bacterium Y4I]
Length = 204
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 28/203 (13%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ DCE + L H LC++Q++ D + ++ G+T LE + K+ H
Sbjct: 19 VVAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVEKGQTEAPNLCRMLEDPNVLKLFHF 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D A+Y FG V T+IA L+ R+ D L + IS Q
Sbjct: 79 GRFDIAAMYHAFGALAAPVYCTKIASRLV-------RTYTDRHGLKNLTQELLGIDISKQ 131
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
Q W LTE + AA DV L + + K+L ++ R
Sbjct: 132 ----------QQMSDWGAEELTEAQLDYAASDVLHLHKLREALDKRLAREG------RSE 175
Query: 230 LYCRCFCI----NENDYVDWPPL 248
+ CF + D WP +
Sbjct: 176 MAQACFDFLPMRAKLDLAGWPEI 198
>gi|153801848|ref|ZP_01956434.1| ribonuclease D [Vibrio cholerae MZO-3]
gi|153829828|ref|ZP_01982495.1| ribonuclease D [Vibrio cholerae 623-39]
gi|229515363|ref|ZP_04404823.1| ribonuclease D [Vibrio cholerae TMA 21]
gi|229528995|ref|ZP_04418385.1| ribonuclease D [Vibrio cholerae 12129(1)]
gi|124122620|gb|EAY41363.1| ribonuclease D [Vibrio cholerae MZO-3]
gi|148874687|gb|EDL72822.1| ribonuclease D [Vibrio cholerae 623-39]
gi|229332769|gb|EEN98255.1| ribonuclease D [Vibrio cholerae 12129(1)]
gi|229348068|gb|EEO13027.1| ribonuclease D [Vibrio cholerae TMA 21]
Length = 381
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 179
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 180 QAGWWDAALQ 189
>gi|347758712|ref|YP_004866274.1| ribonuclease D [Micavibrio aeruginosavorus ARL-13]
gi|347591230|gb|AEP10272.1| ribonuclease D [Micavibrio aeruginosavorus ARL-13]
Length = 385
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 27/160 (16%)
Query: 67 LCIMQLAFPDAI-YLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
LC++Q+A PD Y VD + G + + + + + KV H ++D E + G
Sbjct: 39 LCLIQVASPDGQPYAVDPLAEGIDLTPLYELMMNRA-VLKVFHAARQDLEIFFNMMGSIP 97
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF- 184
V DTQ+A + D I ++ L+ + I +Q+ L + QF
Sbjct: 98 TPVFDTQVAAMVC--------GFGDQIGYLNLVQE-----ICHQK-------LDKGAQFT 137
Query: 185 -WTYRPLTELMVRAAADDVRFLPYIYHNM---MKKLNQQS 220
W+ RPL++ V+ A DDV +L +Y + +KK ++ S
Sbjct: 138 DWSRRPLSDKQVKYALDDVTWLRDVYRKLDHDLKKRDRTS 177
>gi|456877521|gb|EMF92536.1| 3'-5' exonuclease [Leptospira santarosai str. ST188]
Length = 366
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
+C++Q++ Y++D ++ + E+ I K+ H D +AL FG +
Sbjct: 21 SKVCLIQISAKGKNYILDPLKLRN--LDGLGTLFENKKILKIFHSAIDDIKALKKDFGFQ 78
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
N+ DT + L++ ++ DY Y I +KE+
Sbjct: 79 FQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSKKEQ--------KSN 119
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
W RPL + ++ AA D +L I+ M +L +++L+ A+
Sbjct: 120 WEKRPLEKSQLQYAALDTVYLETIWEKMKDELIKRNLYEEAL 161
>gi|411116560|ref|ZP_11389047.1| ribonuclease D [Oscillatoriales cyanobacterium JSC-12]
gi|410712663|gb|EKQ70164.1| ribonuclease D [Oscillatoriales cyanobacterium JSC-12]
Length = 209
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 25/195 (12%)
Query: 33 NASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLA-FPDAIYLVDAIQGGETV 90
A QL AE+L + I D E + L + LC++QL F D + ++ IQ G+T
Sbjct: 14 TAEQL-AEYLTAEA-----IAVDTETMGLLPQRDRLCLVQLCDFHDHVTVI-RIQRGQTA 66
Query: 91 VKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDD 150
K LE+S + K+ H + D L I + + T+IA L + D
Sbjct: 67 APHLKQLLEASQVQKIFHFARFDVATLRHHLDIHVTPLFCTKIASKLARTYSPKHGLKDL 126
Query: 151 YISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYH 210
+G+ D Q + L++ +R AA+DVR+L
Sbjct: 127 VQELIGVELDKTA----------------QSSDWGNAANLSDEQLRYAANDVRYLLTARE 170
Query: 211 NMMKKLNQQSLWYLA 225
++ L ++ W LA
Sbjct: 171 KLIAMLQREDRWELA 185
>gi|419830450|ref|ZP_14353935.1| ribonuclease D [Vibrio cholerae HC-1A2]
gi|419834130|ref|ZP_14357585.1| ribonuclease D [Vibrio cholerae HC-61A2]
gi|419837708|ref|ZP_14361146.1| ribonuclease D [Vibrio cholerae HC-46B1]
gi|421344630|ref|ZP_15795033.1| ribonuclease D [Vibrio cholerae HC-43B1]
gi|421354649|ref|ZP_15804981.1| ribonuclease D [Vibrio cholerae HE-45]
gi|422307928|ref|ZP_16395082.1| ribonuclease D [Vibrio cholerae CP1035(8)]
gi|423822736|ref|ZP_17716746.1| ribonuclease D [Vibrio cholerae HC-55C2]
gi|423856478|ref|ZP_17720554.1| ribonuclease D [Vibrio cholerae HC-59A1]
gi|423883005|ref|ZP_17724142.1| ribonuclease D [Vibrio cholerae HC-60A1]
gi|423998262|ref|ZP_17741514.1| ribonuclease D [Vibrio cholerae HC-02C1]
gi|424010000|ref|ZP_17752936.1| ribonuclease D [Vibrio cholerae HC-44C1]
gi|424017156|ref|ZP_17756985.1| ribonuclease D [Vibrio cholerae HC-55B2]
gi|424020080|ref|ZP_17759866.1| ribonuclease D [Vibrio cholerae HC-59B1]
gi|424625454|ref|ZP_18063915.1| ribonuclease D [Vibrio cholerae HC-50A1]
gi|424629937|ref|ZP_18068224.1| ribonuclease D [Vibrio cholerae HC-51A1]
gi|424633984|ref|ZP_18072084.1| ribonuclease D [Vibrio cholerae HC-52A1]
gi|424637063|ref|ZP_18075071.1| ribonuclease D [Vibrio cholerae HC-55A1]
gi|424640972|ref|ZP_18078855.1| ribonuclease D [Vibrio cholerae HC-56A1]
gi|424649038|ref|ZP_18086701.1| ribonuclease D [Vibrio cholerae HC-57A1]
gi|443527955|ref|ZP_21094004.1| ribonuclease D [Vibrio cholerae HC-78A1]
gi|395940710|gb|EJH51391.1| ribonuclease D [Vibrio cholerae HC-43B1]
gi|395953774|gb|EJH64387.1| ribonuclease D [Vibrio cholerae HE-45]
gi|408012007|gb|EKG49803.1| ribonuclease D [Vibrio cholerae HC-50A1]
gi|408018085|gb|EKG55553.1| ribonuclease D [Vibrio cholerae HC-52A1]
gi|408023305|gb|EKG60481.1| ribonuclease D [Vibrio cholerae HC-56A1]
gi|408023862|gb|EKG61018.1| ribonuclease D [Vibrio cholerae HC-55A1]
gi|408032557|gb|EKG69138.1| ribonuclease D [Vibrio cholerae HC-57A1]
gi|408054903|gb|EKG89858.1| ribonuclease D [Vibrio cholerae HC-51A1]
gi|408618739|gb|EKK91801.1| ribonuclease D [Vibrio cholerae CP1035(8)]
gi|408620223|gb|EKK93235.1| ribonuclease D [Vibrio cholerae HC-1A2]
gi|408634712|gb|EKL06947.1| ribonuclease D [Vibrio cholerae HC-55C2]
gi|408640766|gb|EKL12552.1| ribonuclease D [Vibrio cholerae HC-59A1]
gi|408641129|gb|EKL12910.1| ribonuclease D [Vibrio cholerae HC-60A1]
gi|408648952|gb|EKL20269.1| ribonuclease D [Vibrio cholerae HC-61A2]
gi|408852617|gb|EKL92439.1| ribonuclease D [Vibrio cholerae HC-02C1]
gi|408856256|gb|EKL95951.1| ribonuclease D [Vibrio cholerae HC-46B1]
gi|408860051|gb|EKL99705.1| ribonuclease D [Vibrio cholerae HC-55B2]
gi|408863528|gb|EKM03005.1| ribonuclease D [Vibrio cholerae HC-44C1]
gi|408867174|gb|EKM06536.1| ribonuclease D [Vibrio cholerae HC-59B1]
gi|443453827|gb|ELT17645.1| ribonuclease D [Vibrio cholerae HC-78A1]
Length = 373
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 122 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 171
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 172 QAGWWDAALQ 181
>gi|384424967|ref|YP_005634325.1| Ribonuclease D [Vibrio cholerae LMA3984-4]
gi|327484520|gb|AEA78927.1| Ribonuclease D [Vibrio cholerae LMA3984-4]
Length = 348
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 45 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 96
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 97 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 146
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 147 QAGWWDAALQ 156
>gi|422923283|ref|ZP_16956440.1| ribonuclease D [Vibrio cholerae BJG-01]
gi|341644219|gb|EGS68451.1| ribonuclease D [Vibrio cholerae BJG-01]
Length = 373
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 122 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 171
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 172 QAGWWDAALQ 181
>gi|428224441|ref|YP_007108538.1| 3'-5' exonuclease [Geitlerinema sp. PCC 7407]
gi|427984342|gb|AFY65486.1| 3'-5' exonuclease [Geitlerinema sp. PCC 7407]
Length = 209
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 19/177 (10%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + L H LC++QL P+ V I G+T + LE + KV+H
Sbjct: 26 AIALDTETMGLNPHRDRLCLVQLCNPEGQVTVIRIAQGQTEAPNLRQLLEQEHSLKVMHF 85
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D L Q GI + + T+IA L R +P + + Q
Sbjct: 86 ARFDVAVLRRQLGIFVKPLYCTKIASKL-----ARTYTPRHGLKDL------------IQ 128
Query: 170 EKEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E E+V + W L+ +R AA+DVR+L + L ++ W LA
Sbjct: 129 ELEQVELDKSSQSSDWGNAAHLSTDQLRYAANDVRYLISACRKLTVMLQREGRWELA 185
>gi|417821330|ref|ZP_12467944.1| ribonuclease D [Vibrio cholerae HE39]
gi|423956493|ref|ZP_17735047.1| ribonuclease D [Vibrio cholerae HE-40]
gi|423985281|ref|ZP_17738598.1| ribonuclease D [Vibrio cholerae HE-46]
gi|340038961|gb|EGQ99935.1| ribonuclease D [Vibrio cholerae HE39]
gi|408657426|gb|EKL28506.1| ribonuclease D [Vibrio cholerae HE-40]
gi|408663885|gb|EKL34730.1| ribonuclease D [Vibrio cholerae HE-46]
Length = 373
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 122 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 171
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 172 QAGWWDAALQ 181
>gi|260598272|ref|YP_003210843.1| ribonuclease D [Cronobacter turicensis z3032]
gi|260217449|emb|CBA31565.1| Ribonuclease D [Cronobacter turicensis z3032]
Length = 409
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 86/225 (38%), Gaps = 30/225 (13%)
Query: 23 DSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLV 81
+S + ++T L A L ++ Q + D E V + L ++QL + + L+
Sbjct: 34 ESDLNYQMITTNDALAA--LCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALI 91
Query: 82 DAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ 141
D + E + L+ ITK +H D E FG+ +DTQ+
Sbjct: 92 DPLTITEWA--PFQALLQDQNITKFLHAGSEDLEVFQNAFGMMPDPFIDTQV-------- 141
Query: 142 EGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAA 199
SFVG P CG + + V L + W RPLTE AA
Sbjct: 142 ---------LASFVG---HPLSCGFATLVEHHTGVALDKSESRTDWLARPLTERQCDYAA 189
Query: 200 DDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVD 244
DV +L I H +M+++ + A+ CR + +D
Sbjct: 190 ADVWYLLPIAHKLMEQVREAGWLTAAIN---ECRLMTQRRGEVLD 231
>gi|417825234|ref|ZP_12471822.1| ribonuclease D [Vibrio cholerae HE48]
gi|340046719|gb|EGR07649.1| ribonuclease D [Vibrio cholerae HE48]
Length = 373
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 122 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 171
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 172 QAGWWDAALQ 181
>gi|327308500|ref|XP_003238941.1| exosome component 3'-5' exonuclease [Trichophyton rubrum CBS
118892]
gi|326459197|gb|EGD84650.1| exosome complex exonuclease Rrp6 [Trichophyton rubrum CBS 118892]
Length = 867
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 29/158 (18%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
HG +C+MQ++ + ++VD ++ ++ I KV+H D L G+
Sbjct: 278 HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGL 337
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLADPRYCGISYQEKEEVRVLL 178
L + DT A S ++ P + F VG AD +Y
Sbjct: 338 YLVGLFDTFHAASALQ-------LPKKSLKFLLHEYVGFDADKQYQTAD----------- 379
Query: 179 RQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL M+ A D FL YI+ + +L
Sbjct: 380 ------WRIRPLLAGMLDYARSDTHFLLYIFDRLRNQL 411
>gi|302657746|ref|XP_003020587.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
HKI 0517]
gi|291184437|gb|EFE39969.1| exosome complex exonuclease Rrp6, putative [Trichophyton verrucosum
HKI 0517]
Length = 881
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 19/153 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
HG +C+MQ++ + ++VD ++ ++ I KV+H D L G+
Sbjct: 281 HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGL 340
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
L + DT A S + Q +K +VG AD +Y
Sbjct: 341 YLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQTAD---------------- 382
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL M+ A D FL YI+ + +L
Sbjct: 383 -WRIRPLLAGMLDYARSDTHFLLYIFDRLRNQL 414
>gi|93005631|ref|YP_580068.1| 3'-5' exonuclease [Psychrobacter cryohalolentis K5]
gi|92393309|gb|ABE74584.1| 3'-5' exonuclease [Psychrobacter cryohalolentis K5]
Length = 380
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 27/159 (16%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK-L 125
L ++QL + +YL+DA Q + + ++ + + H C D Y G L
Sbjct: 36 LALIQLNTGNHVYLLDAPQLQLSELWQALMKVDVA----IWHACGEDLGIFYLLSGCPPL 91
Query: 126 HNVVDTQIAYSLI--EEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
N+ DTQIA S + + Q G +++ D E+ ++ + Q
Sbjct: 92 TNIFDTQIALSYLTGQLQMGYQQALD--------------------EQLDMHIDKEQSQS 131
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
W RPL++ + A DDVRFLP +Y ++ L Q L+
Sbjct: 132 DWLQRPLSDEQEQYAIDDVRFLPALYLSLEYALKSQGLY 170
>gi|421351717|ref|ZP_15802082.1| ribonuclease D [Vibrio cholerae HE-25]
gi|395952162|gb|EJH62776.1| ribonuclease D [Vibrio cholerae HE-25]
Length = 373
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 122 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 171
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 172 QAGWWDAALQ 181
>gi|59712314|ref|YP_205090.1| ribonuclease D [Vibrio fischeri ES114]
gi|59480415|gb|AAW86202.1| ribonuclease D [Vibrio fischeri ES114]
Length = 373
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 23/194 (11%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAI 84
+ IVT + +L AE + +S + ++ D E V + L ++Q+ + + LVD +
Sbjct: 1 MEFEIVTQSQRL-AEICQQASTKPFLM-LDTEFVRTRTLYARLGLIQMFDGETLALVDPV 58
Query: 85 QGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
+ + + L++ +TKV+H C D E G ++DTQI + + G
Sbjct: 59 EIDD--LTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFL----GY 112
Query: 145 KRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
S F L++D Y GI + E R D W RPL++ + AA DV +
Sbjct: 113 GLS----TGFAKLVSD--YLGIELDKGEA-----RTD---WMARPLSDKQLHYAAADVHY 158
Query: 205 LPYIYHNMMKKLNQ 218
L ++ + +L+Q
Sbjct: 159 LLPLFEKLQAELSQ 172
>gi|302501205|ref|XP_003012595.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
CBS 112371]
gi|291176154|gb|EFE31955.1| exosome complex exonuclease Rrp6, putative [Arthroderma benhamiae
CBS 112371]
Length = 1069
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 19/153 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
HG +C+MQ++ + ++VD ++ ++ I KV+H D L G+
Sbjct: 465 HGLVCLMQISTREQDWIVDTLKPWRDQLQVLNEVFADPSIIKVLHGSSMDVIWLQRDLGL 524
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
L + DT A S + Q +K +VG AD +Y
Sbjct: 525 YLVGLFDTFHAASAL--QLPKKSLKFLLHEYVGFDADKQYQTAD---------------- 566
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL M+ A D FL YI+ + +L
Sbjct: 567 -WRIRPLLAGMLDYARSDTHFLLYIFDRLRNQL 598
>gi|315054289|ref|XP_003176519.1| exosome component 3'-5' exonuclease [Arthroderma gypseum CBS
118893]
gi|311338365|gb|EFQ97567.1| exosome complex exonuclease RRP6 [Arthroderma gypseum CBS 118893]
Length = 827
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 61/158 (38%), Gaps = 29/158 (18%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
HG +C+MQ++ + ++VD ++ ++ I KV+H D L G+
Sbjct: 286 HGLVCLMQISTREQDWIVDTLKPWRDQLQILNEVFADPSIVKVLHGSSMDVIWLQRDLGL 345
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISF-----VGLLADPRYCGISYQEKEEVRVLL 178
L + DT A S+++ P + F VG AD +Y
Sbjct: 346 YLVGLFDTFHAASVLQ-------LPKKSLKFLLHEYVGFDADKKYQTAD----------- 387
Query: 179 RQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL M+ A D FL YI+ + +L
Sbjct: 388 ------WRIRPLLTGMLDYARSDTHFLLYIFDRLRNEL 419
>gi|57239422|ref|YP_180558.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
gi|58579394|ref|YP_197606.1| ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
gi|57161501|emb|CAH58427.1| putative exonuclease [Ehrlichia ruminantium str. Welgevonden]
gi|58418020|emb|CAI27224.1| Ribonuclease D [Ehrlichia ruminantium str. Welgevonden]
Length = 389
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 52 IGFDCEGVDLCR--HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + C + L ++Q+A+ + ++D + + + + + I K+ HD
Sbjct: 27 IAVDTEFIRNCNEYYPRLSLIQIAWSEGKCVIDVL-ADDIDLSVLESIFYNKEIVKIFHD 85
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
CK+D +AL +F + + D+QIA D+ + + L+A ++ +S
Sbjct: 86 CKQDIDALLTKFPRIPYPIFDSQIAAMFCAYY-------DNAVGYSKLVA--QFLDVSLD 136
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLWYL 224
++ L++ W RPL++ ++ A DDV +L +Y + L +++ LW+L
Sbjct: 137 -----KLTLKRSN--WLMRPLSDDKIQYALDDVVYLYELYQVLYDNLISSKRLLWFL 186
>gi|365887159|ref|ZP_09426029.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. STM 3809]
gi|365337269|emb|CCD98560.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. STM 3809]
Length = 382
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A D ++DA+ G +KA + + + KV H ++D E ++ + GI H
Sbjct: 39 LCVVQMASADEAVVIDALAEG-IDLKAFFELMANEKVLKVFHAARQDIEIIWHRAGIVPH 97
Query: 127 NVVDTQIA 134
+ DTQ+A
Sbjct: 98 PIFDTQVA 105
>gi|389749306|gb|EIM90483.1| hypothetical protein STEHIDRAFT_51034 [Stereum hirsutum FP-91666
SS1]
Length = 208
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 22 IDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHG---SLCIMQLA-FPDA 77
+D++VP+ + + + + SS R L FDCEGV L G SL ++ A F
Sbjct: 1 MDNIVPV-LCDDRASFTSAVAALSSSRTLY--FDCEGVKLGTVGGTLSLITVRSAPFHSN 57
Query: 78 IYLVDAIQGGETVV------------KACKPA---LESSYITKVIHDCKRDSEALYFQFG 122
D + G+T + + KP L S + KV+ D + DS AL+ F
Sbjct: 58 SRQSDGDRNGQTFIFDITSLTLTHQPVSLKPLFALLTSPKVLKVVWDGRMDSSALHHYFR 117
Query: 123 IKLHNVVDTQIAYSLIEEQEGRKRSPDDYIS-FVGLLADPR 162
+ L NV+D Q+ I +E R + +++ F+G + DPR
Sbjct: 118 VDLRNVLDLQLVD--IHSRELRGETIQEHVKRFIGGV-DPR 155
>gi|428219022|ref|YP_007103487.1| 3'-5' exonuclease [Pseudanabaena sp. PCC 7367]
gi|427990804|gb|AFY71059.1| 3'-5' exonuclease [Pseudanabaena sp. PCC 7367]
Length = 209
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 23/180 (12%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L R LC++Q+ D + ++ G K +E++++TKV H
Sbjct: 27 IAVDTETMGLIPRRDRLCLVQICNEDEYISLVRVERGIESAPYLKQLMEATHVTKVFHYA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L +Q GI + T+IA L + G+
Sbjct: 87 RFDVGILKYQLGINTSPIFCTKIASKLARTYTDKH-------------------GLREVV 127
Query: 171 KEEVRVLLRQDPQ---FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVR 227
KE +V L + Q + + L+E ++ A +DVR+L I + + L ++ + LA++
Sbjct: 128 KELTQVDLDKSAQSSDWGNIQNLSEHQLQYATNDVRYLLAISKTLTQMLKREERYDLAIK 187
>gi|110677766|ref|YP_680773.1| 3'- 5' exonuclease family protein [Roseobacter denitrificans OCh
114]
gi|109453882|gb|ABG30087.1| 3'- 5' exonuclease family protein, putative [Roseobacter
denitrificans OCh 114]
Length = 248
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 20/172 (11%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDA-IYLVDAIQGGETVVKACKPALESSYITKVIH 108
++ DCE + L H LC++QL+ D +L+ +G CK LE + K+ H
Sbjct: 63 MVAIDCETMGLHPHRDRLCVVQLSGGDGKAHLIQIAKGQTEAPNLCK-LLEDPKVLKLFH 121
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
+ D A+ FG V T+IA L+ R+ D LL
Sbjct: 122 FGRFDIAAMLNAFGATAAPVYCTKIASRLV-------RTYTDRHGLAKLL---------- 164
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
QE + + +Q W LT+ + AA DV +L + + K L ++
Sbjct: 165 QELLAIDISKQQQSSDWGAETLTDAQIEYAASDVLYLHQLREALNKMLEREG 216
>gi|15641986|ref|NP_231618.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121591319|ref|ZP_01678609.1| ribonuclease D [Vibrio cholerae 2740-80]
gi|147675516|ref|YP_001217510.1| ribonuclease D [Vibrio cholerae O395]
gi|153819311|ref|ZP_01971978.1| ribonuclease D [Vibrio cholerae NCTC 8457]
gi|227082111|ref|YP_002810662.1| ribonuclease D [Vibrio cholerae M66-2]
gi|227118431|ref|YP_002820327.1| ribonuclease D [Vibrio cholerae O395]
gi|229507927|ref|ZP_04397432.1| ribonuclease D [Vibrio cholerae BX 330286]
gi|229511838|ref|ZP_04401317.1| ribonuclease D [Vibrio cholerae B33]
gi|229518974|ref|ZP_04408417.1| ribonuclease D [Vibrio cholerae RC9]
gi|229607472|ref|YP_002878120.1| ribonuclease D [Vibrio cholerae MJ-1236]
gi|254849070|ref|ZP_05238420.1| ribonuclease D [Vibrio cholerae MO10]
gi|298497984|ref|ZP_07007791.1| ribonuclease D [Vibrio cholerae MAK 757]
gi|379741809|ref|YP_005333778.1| ribonuclease D [Vibrio cholerae IEC224]
gi|418350296|ref|ZP_12955027.1| ribonuclease D [Vibrio cholerae HC-43A1]
gi|421325552|ref|ZP_15776076.1| ribonuclease D [Vibrio cholerae CP1041(14)]
gi|421340138|ref|ZP_15790570.1| ribonuclease D [Vibrio cholerae HC-20A2]
gi|422897087|ref|ZP_16934537.1| ribonuclease D [Vibrio cholerae HC-40A1]
gi|423895422|ref|ZP_17727169.1| ribonuclease D [Vibrio cholerae HC-62A1]
gi|424027631|ref|ZP_17767234.1| ribonuclease D [Vibrio cholerae HC-69A1]
gi|9656525|gb|AAF95132.1| ribonuclease D [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121546819|gb|EAX56983.1| ribonuclease D [Vibrio cholerae 2740-80]
gi|126510131|gb|EAZ72725.1| ribonuclease D [Vibrio cholerae NCTC 8457]
gi|146317399|gb|ABQ21938.1| ribonuclease D [Vibrio cholerae O395]
gi|227009999|gb|ACP06211.1| ribonuclease D [Vibrio cholerae M66-2]
gi|227013881|gb|ACP10091.1| ribonuclease D [Vibrio cholerae O395]
gi|229343663|gb|EEO08638.1| ribonuclease D [Vibrio cholerae RC9]
gi|229351803|gb|EEO16744.1| ribonuclease D [Vibrio cholerae B33]
gi|229355432|gb|EEO20353.1| ribonuclease D [Vibrio cholerae BX 330286]
gi|229370127|gb|ACQ60550.1| ribonuclease D [Vibrio cholerae MJ-1236]
gi|254844775|gb|EET23189.1| ribonuclease D [Vibrio cholerae MO10]
gi|297542317|gb|EFH78367.1| ribonuclease D [Vibrio cholerae MAK 757]
gi|341622178|gb|EGS47861.1| ribonuclease D [Vibrio cholerae HC-40A1]
gi|356444792|gb|EHH97601.1| ribonuclease D [Vibrio cholerae HC-43A1]
gi|378795319|gb|AFC58790.1| ribonuclease D [Vibrio cholerae IEC224]
gi|395917390|gb|EJH28218.1| ribonuclease D [Vibrio cholerae CP1041(14)]
gi|395939421|gb|EJH50103.1| ribonuclease D [Vibrio cholerae HC-20A2]
gi|408655222|gb|EKL26347.1| ribonuclease D [Vibrio cholerae HC-62A1]
gi|408878934|gb|EKM17927.1| ribonuclease D [Vibrio cholerae HC-69A1]
Length = 381
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVEQVT 179
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 180 QAGWWDAALQ 189
>gi|384919547|ref|ZP_10019593.1| ribonuclease D [Citreicella sp. 357]
gi|384466572|gb|EIE51071.1| ribonuclease D [Citreicella sp. 357]
Length = 385
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 68/163 (41%), Gaps = 31/163 (19%)
Query: 64 HGSLCIMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYF 119
+ LC++QLAFP A LVD + G ++ + + KV H ++D E Y
Sbjct: 36 YSKLCLVQLAFPGAGDENAVLVDPLAEGLSL-DPLMMLFRDTNVVKVFHAARQDLEIFYI 94
Query: 120 QFGIKLHNVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVL 177
G+ + DTQ+A + EQ G Y + V R C S
Sbjct: 95 DHGVIPTPLFDTQVAAMVCGFGEQVG-------YETLV-----KRICKAS---------- 132
Query: 178 LRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
L + +F W+ RPLT+ A DV L IY + +L++
Sbjct: 133 LDKSSRFTDWSRRPLTDAQKTYALADVTHLRGIYEYLAAELDR 175
>gi|149191139|ref|ZP_01869398.1| ribonuclease D [Vibrio shilonii AK1]
gi|148835067|gb|EDL52045.1| ribonuclease D [Vibrio shilonii AK1]
Length = 289
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDASVLKVLHACGEDLEVFVNSFGCMPFPMVDTQIMAAFL----GHGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y G+ + E R D W RPLT+ + AA DV +L +Y + ++
Sbjct: 122 VDE--YLGVELDKSES-----RAD---WVARPLTDKQLDYAAADVYYLWPLYFKLFAQVE 171
Query: 218 QQSLW 222
+ W
Sbjct: 172 AKDWW 176
>gi|357030453|ref|ZP_09092397.1| ribonuclease D [Gluconobacter morbifer G707]
gi|356415147|gb|EHH68790.1| ribonuclease D [Gluconobacter morbifer G707]
Length = 398
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 25/168 (14%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + + L+D + G + + E I KV H ++D E F
Sbjct: 51 LCLVQLAGREDVVLIDTLAPGIDLTALGQLLAEPDCI-KVFHAARQDLEIFLHIFDRLPV 109
Query: 127 NVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+V DTQ+A + +Q G Y S VG + G S +
Sbjct: 110 SVFDTQVAAMVAGFGDQVG-------YDSLVGAI-----TGRSIDKAHRF--------SD 149
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL--WYLAVRGAL 230
W RPLT+ + AA DV L +Y + K+L +Q W A +G L
Sbjct: 150 WAARPLTKAQIAYAAADVTHLRTVYLALRKQLEEQGRLHWADAEQGVL 197
>gi|153823321|ref|ZP_01975988.1| ribonuclease D, partial [Vibrio cholerae B33]
gi|126519155|gb|EAZ76378.1| ribonuclease D [Vibrio cholerae B33]
Length = 246
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLST----GFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 122 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVEQVT 171
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 172 QAGWWDAALQ 181
>gi|418295976|ref|ZP_12907820.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
gi|355539408|gb|EHH08646.1| ribonuclease D [Agrobacterium tumefaciens CCNWGS0286]
Length = 386
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P LVD + G + + + + + KV H ++D E +Y G+ H
Sbjct: 37 LCLVQMASPTLEVLVDPLAKGIDLTPLFE-LMANPDVVKVFHAARQDIEIIYHLGGLIPH 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D IS+ L+ Q+ + V++ W+
Sbjct: 96 PIFDTQVAAMVC--------GFGDSISYDQLV----------QKIKNVQIDKSSRFTDWS 137
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ--SLW 222
RPLTE + A DV L +Y + +L ++ SLW
Sbjct: 138 RRPLTEKQLDYALADVTHLRDVYLALKAQLEREGRSLW 175
>gi|429100905|ref|ZP_19162879.1| Ribonuclease D [Cronobacter turicensis 564]
gi|426287554|emb|CCJ88992.1| Ribonuclease D [Cronobacter turicensis 564]
Length = 409
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 86/225 (38%), Gaps = 30/225 (13%)
Query: 23 DSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLV 81
+S + ++T L A L ++ Q + D E V + L ++QL + + L+
Sbjct: 34 ESDLNYQMITTNDALAA--LCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALI 91
Query: 82 DAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ 141
D + E + L+ +TK +H D E FG+ +DTQ+
Sbjct: 92 DPLTITEWA--PFQALLQDQNVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQV-------- 141
Query: 142 EGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAA 199
SFVG P CG + + V L + W RPLTE AA
Sbjct: 142 ---------LASFVG---HPLSCGFATLVEHHTGVALDKSESRTDWLARPLTERQCDYAA 189
Query: 200 DDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFCINENDYVD 244
DV +L I H +M+++ + A+ CR + +D
Sbjct: 190 ADVWYLLPIAHKLMEQVREAGWLTAAIN---ECRLMTQRRGEVLD 231
>gi|358058978|dbj|GAA95376.1| hypothetical protein E5Q_02030 [Mixia osmundae IAM 14324]
Length = 768
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 83/223 (37%), Gaps = 42/223 (18%)
Query: 11 IPLSSDPDG-------KPIDSV--VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL 61
+PL + PD K IDS P V A QL E I D E D
Sbjct: 193 LPLLASPDNLPSEISKKAIDSFSSTPFTYVDTAEQLDRLLQELKRPDHAEIAIDLEHHDF 252
Query: 62 CRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALES-------SYITKVIHDCKRD 113
+ G +C+MQ++ ++VD T+V + LES KV+H + D
Sbjct: 253 RSYVGFVCLMQISTRSHDWIVD------TLVSEVRDRLESLNEVFADPAKVKVMHGAQSD 306
Query: 114 SEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEE 173
L FG+ + N+ DT A ++ G++ + + D RY
Sbjct: 307 VIWLQRDFGLYIVNLFDTYHATVVLS--YGQRSLASLLTKYTHFVPDKRYQLAD------ 358
Query: 174 VRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL + M+ A D +L IY ++ + L
Sbjct: 359 -----------WRLRPLPQEMIDYARSDTHYLLNIYDHLRRAL 390
>gi|75908135|ref|YP_322431.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
gi|75701860|gb|ABA21536.1| 3'-5' exonuclease [Anabaena variabilis ATCC 29413]
Length = 209
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 68/176 (38%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QL P+ I G+T K LE++ + KV H
Sbjct: 27 IAVDTETMGLLPQRDRLCLIQLCNPEGKVTAIRIARGQTAAPNLKKLLEATNVLKVFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L I + + T+IA L R L D Y E
Sbjct: 87 RFDVATLRHHLDIHVQPIFCTKIASKLARTYTNRHG-----------LKDLVY------E 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E+V + W LT+ + AA+DVR+L ++ L ++ W LA
Sbjct: 130 LEQVELDKSAQSSDWGNAANLTDAQLSYAANDVRYLLSAQQKLVAMLKREERWELA 185
>gi|429888002|ref|ZP_19369506.1| Ribonuclease D [Vibrio cholerae PS15]
gi|429225001|gb|EKY31299.1| Ribonuclease D [Vibrio cholerae PS15]
Length = 373
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 122 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVERVT 171
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 172 QAGWWDAALQ 181
>gi|218245974|ref|YP_002371345.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
gi|218166452|gb|ACK65189.1| 3'-5' exonuclease [Cyanothece sp. PCC 8801]
Length = 210
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 19/177 (10%)
Query: 51 VIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + L + LC++QL P I+ G+ K +E+ I KV H
Sbjct: 27 AIAVDTETMGLIPQRDRLCLVQLCDPSGFVTAIRIERGQKEAPKLKQLMEAKTILKVFHY 86
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D L + FGI+ + T+IA L Y S GL + Q
Sbjct: 87 ARFDVAQLRYHFGIETQPIFCTKIASKL----------ARTYTSSHGLKS-------LVQ 129
Query: 170 EKEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E E + + W L+ + AA+DVR+L ++ L ++ W LA
Sbjct: 130 ELEGIELDKTSQSSDWGNSANLSVAQLSYAANDVRYLIPAKEKLITMLQREERWQLA 186
>gi|47228827|emb|CAG07559.1| unnamed protein product [Tetraodon nigroviridis]
Length = 550
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 63/159 (39%), Gaps = 28/159 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ + +++D ++ + + A I KV H
Sbjct: 278 AVDLEHHSYRSFLGITCLMQISTREEDFIIDTLEL-RSEMYILNEAFTDPAIVKVFHGAD 336
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYIS-FVGLLADPRYCGISYQE 170
D E L FG+ + + DT A + + S D ++ F + +D RY
Sbjct: 337 SDIEWLQRDFGLYVVRLFDTHQASRALNLA---RHSLDHLLTHFCNVASDKRYQLAD--- 390
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
W RPL E MV+ A D +L YIY
Sbjct: 391 --------------WRIRPLPEEMVQYARADTHYLLYIY 415
>gi|58039094|ref|YP_191058.1| ribonuclease D [Gluconobacter oxydans 621H]
gi|58001508|gb|AAW60402.1| Ribonuclease D [Gluconobacter oxydans 621H]
Length = 396
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 23/161 (14%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA + + L+D + G + L TKV H ++D E F
Sbjct: 49 LCLVQLAGTEDVVLIDTLAPG-IDLAPLGALLAKPDCTKVFHAARQDLEIFLHIFDRLPA 107
Query: 127 NVVDTQIAYSL--IEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+V DTQ+A + +Q G Y S VG + G S +
Sbjct: 108 SVFDTQVAAMVAGFGDQVG-------YDSLVGAI-----TGRSIDKAHRF--------SD 147
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
W+ RPL++ + AA DV L +Y + K+L +Q + A
Sbjct: 148 WSARPLSKAQIAYAATDVTHLRTVYDALRKQLAEQDRLHWA 188
>gi|255745267|ref|ZP_05419216.1| ribonuclease D [Vibrio cholera CIRS 101]
gi|262155992|ref|ZP_06029112.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
gi|360035866|ref|YP_004937629.1| ribonuclease D [Vibrio cholerae O1 str. 2010EL-1786]
gi|417814024|ref|ZP_12460677.1| ribonuclease D [Vibrio cholerae HC-49A2]
gi|417817761|ref|ZP_12464390.1| ribonuclease D [Vibrio cholerae HCUF01]
gi|418335002|ref|ZP_12943915.1| ribonuclease D [Vibrio cholerae HC-06A1]
gi|418338616|ref|ZP_12947510.1| ribonuclease D [Vibrio cholerae HC-23A1]
gi|418346537|ref|ZP_12951297.1| ribonuclease D [Vibrio cholerae HC-28A1]
gi|418355777|ref|ZP_12958496.1| ribonuclease D [Vibrio cholerae HC-61A1]
gi|419826957|ref|ZP_14350456.1| ribonuclease D [Vibrio cholerae CP1033(6)]
gi|421317834|ref|ZP_15768402.1| ribonuclease D [Vibrio cholerae CP1032(5)]
gi|421321751|ref|ZP_15772304.1| ribonuclease D [Vibrio cholerae CP1038(11)]
gi|421329211|ref|ZP_15779721.1| ribonuclease D [Vibrio cholerae CP1042(15)]
gi|421333120|ref|ZP_15783597.1| ribonuclease D [Vibrio cholerae CP1046(19)]
gi|421336709|ref|ZP_15787170.1| ribonuclease D [Vibrio cholerae CP1048(21)]
gi|421348017|ref|ZP_15798394.1| ribonuclease D [Vibrio cholerae HC-46A1]
gi|422903287|ref|ZP_16938263.1| ribonuclease D [Vibrio cholerae HC-48A1]
gi|422907171|ref|ZP_16941975.1| ribonuclease D [Vibrio cholerae HC-70A1]
gi|422914019|ref|ZP_16948525.1| ribonuclease D [Vibrio cholerae HFU-02]
gi|422926225|ref|ZP_16959239.1| ribonuclease D [Vibrio cholerae HC-38A1]
gi|423145545|ref|ZP_17133139.1| ribonuclease D [Vibrio cholerae HC-19A1]
gi|423150221|ref|ZP_17137535.1| ribonuclease D [Vibrio cholerae HC-21A1]
gi|423154039|ref|ZP_17141220.1| ribonuclease D [Vibrio cholerae HC-22A1]
gi|423157124|ref|ZP_17144217.1| ribonuclease D [Vibrio cholerae HC-32A1]
gi|423160694|ref|ZP_17147634.1| ribonuclease D [Vibrio cholerae HC-33A2]
gi|423165516|ref|ZP_17152244.1| ribonuclease D [Vibrio cholerae HC-48B2]
gi|423731532|ref|ZP_17704835.1| ribonuclease D [Vibrio cholerae HC-17A1]
gi|423768813|ref|ZP_17712962.1| ribonuclease D [Vibrio cholerae HC-50A2]
gi|423930859|ref|ZP_17731562.1| ribonuclease D [Vibrio cholerae HC-77A1]
gi|424002974|ref|ZP_17746049.1| ribonuclease D [Vibrio cholerae HC-17A2]
gi|424006763|ref|ZP_17749733.1| ribonuclease D [Vibrio cholerae HC-37A1]
gi|424024745|ref|ZP_17764396.1| ribonuclease D [Vibrio cholerae HC-62B1]
gi|424586905|ref|ZP_18026484.1| ribonuclease D [Vibrio cholerae CP1030(3)]
gi|424591649|ref|ZP_18031075.1| ribonuclease D [Vibrio cholerae CP1037(10)]
gi|424595554|ref|ZP_18034875.1| ribonuclease D [Vibrio cholerae CP1040(13)]
gi|424599472|ref|ZP_18038651.1| ribonuclease D [Vibrio Cholerae CP1044(17)]
gi|424602192|ref|ZP_18041333.1| ribonuclease D [Vibrio cholerae CP1047(20)]
gi|424607162|ref|ZP_18046104.1| ribonuclease D [Vibrio cholerae CP1050(23)]
gi|424610984|ref|ZP_18049823.1| ribonuclease D [Vibrio cholerae HC-39A1]
gi|424613797|ref|ZP_18052585.1| ribonuclease D [Vibrio cholerae HC-41A1]
gi|424617774|ref|ZP_18056446.1| ribonuclease D [Vibrio cholerae HC-42A1]
gi|424622559|ref|ZP_18061064.1| ribonuclease D [Vibrio cholerae HC-47A1]
gi|424645522|ref|ZP_18083258.1| ribonuclease D [Vibrio cholerae HC-56A2]
gi|424653287|ref|ZP_18090667.1| ribonuclease D [Vibrio cholerae HC-57A2]
gi|424657111|ref|ZP_18094396.1| ribonuclease D [Vibrio cholerae HC-81A2]
gi|440710182|ref|ZP_20890833.1| ribonuclease D [Vibrio cholerae 4260B]
gi|443504342|ref|ZP_21071300.1| ribonuclease D [Vibrio cholerae HC-64A1]
gi|443508240|ref|ZP_21075003.1| ribonuclease D [Vibrio cholerae HC-65A1]
gi|443512082|ref|ZP_21078720.1| ribonuclease D [Vibrio cholerae HC-67A1]
gi|443515640|ref|ZP_21082151.1| ribonuclease D [Vibrio cholerae HC-68A1]
gi|443519433|ref|ZP_21085829.1| ribonuclease D [Vibrio cholerae HC-71A1]
gi|443524323|ref|ZP_21090536.1| ribonuclease D [Vibrio cholerae HC-72A2]
gi|443531920|ref|ZP_21097934.1| ribonuclease D [Vibrio cholerae HC-7A1]
gi|443535719|ref|ZP_21101597.1| ribonuclease D [Vibrio cholerae HC-80A1]
gi|443539264|ref|ZP_21105118.1| ribonuclease D [Vibrio cholerae HC-81A1]
gi|449055593|ref|ZP_21734261.1| Ribonuclease D [Vibrio cholerae O1 str. Inaba G4222]
gi|255737097|gb|EET92493.1| ribonuclease D [Vibrio cholera CIRS 101]
gi|262030170|gb|EEY48814.1| ribonuclease D [Vibrio cholerae INDRE 91/1]
gi|340036510|gb|EGQ97486.1| ribonuclease D [Vibrio cholerae HC-49A2]
gi|340037484|gb|EGQ98459.1| ribonuclease D [Vibrio cholerae HCUF01]
gi|341621378|gb|EGS47124.1| ribonuclease D [Vibrio cholerae HC-70A1]
gi|341621521|gb|EGS47266.1| ribonuclease D [Vibrio cholerae HC-48A1]
gi|341637243|gb|EGS61931.1| ribonuclease D [Vibrio cholerae HFU-02]
gi|341646007|gb|EGS70125.1| ribonuclease D [Vibrio cholerae HC-38A1]
gi|356417026|gb|EHH70645.1| ribonuclease D [Vibrio cholerae HC-06A1]
gi|356418213|gb|EHH71816.1| ribonuclease D [Vibrio cholerae HC-21A1]
gi|356422759|gb|EHH76228.1| ribonuclease D [Vibrio cholerae HC-19A1]
gi|356428599|gb|EHH81825.1| ribonuclease D [Vibrio cholerae HC-22A1]
gi|356430258|gb|EHH83467.1| ribonuclease D [Vibrio cholerae HC-23A1]
gi|356432842|gb|EHH86037.1| ribonuclease D [Vibrio cholerae HC-28A1]
gi|356439398|gb|EHH92367.1| ribonuclease D [Vibrio cholerae HC-32A1]
gi|356445435|gb|EHH98239.1| ribonuclease D [Vibrio cholerae HC-33A2]
gi|356450871|gb|EHI03579.1| ribonuclease D [Vibrio cholerae HC-48B2]
gi|356452275|gb|EHI04954.1| ribonuclease D [Vibrio cholerae HC-61A1]
gi|356647020|gb|AET27075.1| ribonuclease D [Vibrio cholerae O1 str. 2010EL-1786]
gi|395916092|gb|EJH26922.1| ribonuclease D [Vibrio cholerae CP1032(5)]
gi|395918745|gb|EJH29569.1| ribonuclease D [Vibrio cholerae CP1038(11)]
gi|395927745|gb|EJH38508.1| ribonuclease D [Vibrio cholerae CP1042(15)]
gi|395928522|gb|EJH39275.1| ribonuclease D [Vibrio cholerae CP1046(19)]
gi|395931808|gb|EJH42552.1| ribonuclease D [Vibrio cholerae CP1048(21)]
gi|395942596|gb|EJH53272.1| ribonuclease D [Vibrio cholerae HC-46A1]
gi|395958591|gb|EJH69070.1| ribonuclease D [Vibrio cholerae HC-56A2]
gi|395959182|gb|EJH69625.1| ribonuclease D [Vibrio cholerae HC-57A2]
gi|395961885|gb|EJH72194.1| ribonuclease D [Vibrio cholerae HC-42A1]
gi|395970673|gb|EJH80413.1| ribonuclease D [Vibrio cholerae HC-47A1]
gi|395972902|gb|EJH82476.1| ribonuclease D [Vibrio cholerae CP1030(3)]
gi|395975338|gb|EJH84829.1| ribonuclease D [Vibrio cholerae CP1047(20)]
gi|408007093|gb|EKG45200.1| ribonuclease D [Vibrio cholerae HC-39A1]
gi|408012799|gb|EKG50567.1| ribonuclease D [Vibrio cholerae HC-41A1]
gi|408030990|gb|EKG67633.1| ribonuclease D [Vibrio cholerae CP1037(10)]
gi|408031934|gb|EKG68534.1| ribonuclease D [Vibrio cholerae CP1040(13)]
gi|408041489|gb|EKG77595.1| ribonuclease D [Vibrio Cholerae CP1044(17)]
gi|408043025|gb|EKG79051.1| ribonuclease D [Vibrio cholerae CP1050(23)]
gi|408053118|gb|EKG88138.1| ribonuclease D [Vibrio cholerae HC-81A2]
gi|408607747|gb|EKK81150.1| ribonuclease D [Vibrio cholerae CP1033(6)]
gi|408624154|gb|EKK97106.1| ribonuclease D [Vibrio cholerae HC-17A1]
gi|408633686|gb|EKL06000.1| ribonuclease D [Vibrio cholerae HC-50A2]
gi|408654291|gb|EKL25433.1| ribonuclease D [Vibrio cholerae HC-77A1]
gi|408845371|gb|EKL85487.1| ribonuclease D [Vibrio cholerae HC-37A1]
gi|408846144|gb|EKL86256.1| ribonuclease D [Vibrio cholerae HC-17A2]
gi|408870337|gb|EKM09617.1| ribonuclease D [Vibrio cholerae HC-62B1]
gi|439974405|gb|ELP50582.1| ribonuclease D [Vibrio cholerae 4260B]
gi|443431287|gb|ELS73839.1| ribonuclease D [Vibrio cholerae HC-64A1]
gi|443435182|gb|ELS81326.1| ribonuclease D [Vibrio cholerae HC-65A1]
gi|443439065|gb|ELS88780.1| ribonuclease D [Vibrio cholerae HC-67A1]
gi|443443050|gb|ELS96352.1| ribonuclease D [Vibrio cholerae HC-68A1]
gi|443446851|gb|ELT03507.1| ribonuclease D [Vibrio cholerae HC-71A1]
gi|443449657|gb|ELT09948.1| ribonuclease D [Vibrio cholerae HC-72A2]
gi|443457310|gb|ELT24707.1| ribonuclease D [Vibrio cholerae HC-7A1]
gi|443461259|gb|ELT32332.1| ribonuclease D [Vibrio cholerae HC-80A1]
gi|443465364|gb|ELT40024.1| ribonuclease D [Vibrio cholerae HC-81A1]
gi|448264632|gb|EMB01869.1| Ribonuclease D [Vibrio cholerae O1 str. Inaba G4222]
Length = 373
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 122 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVEQVT 171
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 172 QAGWWDAALQ 181
>gi|197335934|ref|YP_002156528.1| ribonuclease D [Vibrio fischeri MJ11]
gi|423686479|ref|ZP_17661287.1| ribonuclease D [Vibrio fischeri SR5]
gi|197317424|gb|ACH66871.1| ribonuclease D [Vibrio fischeri MJ11]
gi|371494547|gb|EHN70145.1| ribonuclease D [Vibrio fischeri SR5]
Length = 373
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 23/194 (11%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAI 84
+ IVT + +L AE + +S + ++ D E V + L ++Q+ + + LVD +
Sbjct: 1 MEFEIVTQSQRL-AEICQQASTKPFLM-LDTEFVRTRTLYARLGLIQMFDGETLALVDPV 58
Query: 85 QGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGR 144
+ + + L++ +TKV+H C D E G ++DTQI + + G
Sbjct: 59 EIDD--LTPLWDLLKNESVTKVLHACGEDLEVFQHYAGCMPTPMIDTQIMAAFL----GY 112
Query: 145 KRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRF 204
S F L++D Y GI + E R D W RPL++ + AA DV +
Sbjct: 113 GLS----TGFAKLVSD--YLGIELDKGEA-----RTD---WMARPLSDKQLHYAAADVHY 158
Query: 205 LPYIYHNMMKKLNQ 218
L ++ + +L+Q
Sbjct: 159 LLPLFEKLQAELSQ 172
>gi|56750860|ref|YP_171561.1| ribonuclease D [Synechococcus elongatus PCC 6301]
gi|81299489|ref|YP_399697.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
gi|56685819|dbj|BAD79041.1| probable ribonuclease D [Synechococcus elongatus PCC 6301]
gi|81168370|gb|ABB56710.1| 3'-5' exonuclease [Synechococcus elongatus PCC 7942]
Length = 211
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 63/176 (35%), Gaps = 17/176 (9%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + L H LC++QL I I G+TV + E ITKV H
Sbjct: 28 AIAIDTEAMGLNFHRDRLCLVQLCDSAGITTCVRIAQGQTVAPNLQALCEDPQITKVFHF 87
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D AL GI + + T+IA L + VG+ D
Sbjct: 88 ARFDITALKHGLGIAVQPIFCTKIASKLARTYSSQHGLKSLLQELVGVELDKT------- 140
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
Q + L+ +R A +DVR+L + L ++ W LA
Sbjct: 141 ---------AQSSDWGNAAALSHEQMRYACNDVRYLLAAQAKLTTMLQREGRWQLA 187
>gi|325292526|ref|YP_004278390.1| Ribonuclease D [Agrobacterium sp. H13-3]
gi|418406679|ref|ZP_12979998.1| ribonuclease D [Agrobacterium tumefaciens 5A]
gi|325060379|gb|ADY64070.1| Ribonuclease D [Agrobacterium sp. H13-3]
gi|358007172|gb|EHJ99495.1| ribonuclease D [Agrobacterium tumefaciens 5A]
Length = 386
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A P LVD + G + + + + + KV H ++D E +Y G+ H
Sbjct: 37 LCLVQMASPTLEVLVDPLAKGLDLTPLFE-LMANPDVVKVFHAARQDIEIIYHLGGLIPH 95
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A + D IS+ L+ Q + V++ W+
Sbjct: 96 PIFDTQVAAMVC--------GFGDSISYDQLV----------QRIKNVQIDKSSRFTDWS 137
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ--SLW 222
RPLTE + A DV L +Y + +L ++ SLW
Sbjct: 138 RRPLTEKQLDYALADVTHLRDVYLALKAQLEREGRSLW 175
>gi|257059023|ref|YP_003136911.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
gi|256589189|gb|ACV00076.1| 3'-5' exonuclease [Cyanothece sp. PCC 8802]
Length = 210
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 69/177 (38%), Gaps = 19/177 (10%)
Query: 51 VIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + L + LC++QL P I+ G+ K +E+ I KV H
Sbjct: 27 AIAVDTETMGLIPQRDRLCLVQLCDPSGFVTAIRIERGQKEAPKLKQLMEAKTILKVFHY 86
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D L + FGI+ + T+IA L Y S GL + Q
Sbjct: 87 ARFDVAQLRYHFGIETQPIFCTKIASKL----------ARTYTSSHGLKS-------LVQ 129
Query: 170 EKEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E E + + W L+ + AA+DVR+L ++ L ++ W LA
Sbjct: 130 ELEGIELDKTSQSSDWGNSANLSVAQLSYAANDVRYLIPAKEKLITMLQREERWQLA 186
>gi|418054044|ref|ZP_12692100.1| ribonuclease D [Hyphomicrobium denitrificans 1NES1]
gi|353211669|gb|EHB77069.1| ribonuclease D [Hyphomicrobium denitrificans 1NES1]
Length = 384
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 23/154 (14%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA P+A +VD + G + + ++S + KV H ++D E ++ + G+
Sbjct: 39 LCLIQLAGPEAEAIVDPLAPGIDLAPFYQLMADTSTV-KVFHAARQDIEIVFLKSGVVPT 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
V D+Q+A + D IS+V L+ K+ L + +F
Sbjct: 98 PVFDSQVAAMVC--------GFGDSISYVNLV------------KKTTGTDLDKSSRFTD 137
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
W+ RPL+ + A DV +L +Y + + L++
Sbjct: 138 WSRRPLSPKQLDYALADVTYLRDVYVRLRQTLDK 171
>gi|146340329|ref|YP_001205377.1| ribonuclease D (RNase D) [Bradyrhizobium sp. ORS 278]
gi|146193135|emb|CAL77147.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS 278]
Length = 389
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A D ++DA+ G +KA + + + KV H ++D E ++ + GI H
Sbjct: 46 LCVVQMASQDEAVVIDALAEG-IDLKAFFELMANEKVLKVFHAARQDIEIIWHRAGIVPH 104
Query: 127 NVVDTQIA 134
+ DTQ+A
Sbjct: 105 PIFDTQVA 112
>gi|389612618|dbj|BAM19736.1| unknown protein, partial [Papilio xuthus]
Length = 94
Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISF 154
K LE K++HDC++ S+ LY + +KL++V DTQ+ + LI + R P +
Sbjct: 10 KKLLECESPKKIVHDCRKISDCLYHKHNVKLNSVFDTQVGH-LIVSRNKSGRIPKTVKTL 68
Query: 155 VGLLADPRYCGISYQEKEEV 174
LA Y G EE+
Sbjct: 69 AESLAT--YLGFKSNVIEEI 86
>gi|262167934|ref|ZP_06035634.1| ribonuclease D [Vibrio cholerae RC27]
gi|262023661|gb|EEY42362.1| ribonuclease D [Vibrio cholerae RC27]
Length = 348
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 45 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 96
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 97 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVEQVT 146
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 147 QAGWWDAALQ 156
>gi|91977418|ref|YP_570077.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
gi|91683874|gb|ABE40176.1| ribonuclease D [Rhodopseudomonas palustris BisB5]
Length = 392
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A PD +VD + G +K + + + KV H ++D E ++ + GI H
Sbjct: 39 LCVVQMASPDEAVVVDTLAPG-IDLKPFFDLMANENVLKVFHAARQDIEIVWHRAGIVPH 97
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQ+A ++ D I++ L+ R G + W+
Sbjct: 98 PIFDTQVAAMVL--------GYGDSIAYDQLV--ERITGHRPDKTHRF--------TDWS 139
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
RPLT+ + A DV L ++ + L ++
Sbjct: 140 RRPLTDEQLHYAVSDVTHLRDVFAALDADLKKR 172
>gi|342179234|sp|C9XUE4.2|RND_CROTZ RecName: Full=Ribonuclease D; Short=RNase D
Length = 369
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 77/203 (37%), Gaps = 28/203 (13%)
Query: 45 SSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYI 103
++ Q + D E V + L ++QL + + L+D + E + L+ I
Sbjct: 14 TARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTITEWA--PFQALLQDQNI 71
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
TK +H D E FG+ +DTQ+ SFVG P
Sbjct: 72 TKFLHAGSEDLEVFQNAFGMMPDPFIDTQV-----------------LASFVG---HPLS 111
Query: 164 CGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
CG + + V L + W RPLTE AA DV +L I H +M+++ +
Sbjct: 112 CGFATLVEHHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW 171
Query: 222 WYLAVRGALYCRCFCINENDYVD 244
A+ CR + +D
Sbjct: 172 LTAAIN---ECRLMTQRRGEVLD 191
>gi|299133324|ref|ZP_07026519.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
gi|298593461|gb|EFI53661.1| 3'-5' exonuclease [Afipia sp. 1NLS2]
Length = 204
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 62/167 (37%), Gaps = 22/167 (13%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+ D E + L H LC++QL+ D V I G T K L ITK+ H
Sbjct: 20 VAIDTETLGLNPHRDRLCVVQLSNGDGSADVVQIPAGHTDAPNLKKLLGDPAITKLFHFA 79
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D LY FG+ V T+IA L+ R D +G
Sbjct: 80 RFDIAVLYHAFGVMAQPVYCTKIASKLVRTYTDRHGLKDLVREMLG-------------- 125
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
V + +Q W L+E + AA DV L H + KL+
Sbjct: 126 ---VEISKQQQSSDWGAASLSEAQLSYAASDVLHL----HALRDKLD 165
>gi|121729927|ref|ZP_01682350.1| ribonuclease D [Vibrio cholerae V52]
gi|121628334|gb|EAX60840.1| ribonuclease D [Vibrio cholerae V52]
Length = 350
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 70 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 121
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 122 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLVEQVT 171
Query: 218 QQSLWYLAVR 227
Q W A++
Sbjct: 172 QAGWWDAALQ 181
>gi|408377204|ref|ZP_11174807.1| ribonuclease D [Agrobacterium albertimagni AOL15]
gi|407749163|gb|EKF60676.1| ribonuclease D [Agrobacterium albertimagni AOL15]
Length = 207
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 18/175 (10%)
Query: 43 EPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESS 101
E +S I D E + L R LC++QL+F D V I + L
Sbjct: 14 EAASRYVDAIAIDTETLGLVPRRDRLCVVQLSFGDGTADVIRIAKNQKEAPNLVAMLADP 73
Query: 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADP 161
K+ H + D L+ FG+ NV T+IA L R D+
Sbjct: 74 ARQKIFHYGRFDIAVLFHTFGVTTANVFCTKIASRLTRTYTDRHGLKDN----------- 122
Query: 162 RYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+E EV + Q W L++ + AA DV L + +M++L
Sbjct: 123 ------LKEMLEVDISKAQQSSDWAAETLSQAQLEYAASDVLHLHALRDKLMQRL 171
>gi|302415657|ref|XP_003005660.1| 3'-5' exonuclease domain-containing protein [Verticillium
albo-atrum VaMs.102]
gi|261355076|gb|EEY17504.1| 3'-5' exonuclease domain-containing protein [Verticillium
albo-atrum VaMs.102]
Length = 894
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 29/167 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G L +MQ++ D ++VD ++ ++ + I KV H
Sbjct: 291 AVDLEHHDTRTYAGLLSLMQISTRDQDWIVDTLKPWRHQLEVLNEVFTNPKIVKVFHGAH 350
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQ 169
D + L G+ ++ + DT A ++ G + Y+ FV AD +Y
Sbjct: 351 MDMQWLQRDLGLYINGLFDTFFAAEIL----GYPQRSLAYLLKRFVDFDADKKYQMAD-- 404
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL E M A D +L YI+ + +L
Sbjct: 405 ---------------WRIRPLPEEMFYYARSDTHYLLYIFDRIRNEL 436
>gi|372278430|ref|ZP_09514466.1| exonuclease [Oceanicola sp. S124]
Length = 204
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 26/172 (15%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ DCE + L H LC++Q++ D + + G+T LE + K+ H
Sbjct: 19 VVAIDCETMGLNPHRDRLCVIQMSGGDGNAHIVQVAKGQTEAPNLCRMLEDPAVLKIFHY 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D A+Y FG V T+IA L+ R G+
Sbjct: 79 GRFDIAAMYNAFGALAAPVYCTKIASRLVRTYTDRH-------------------GLKNL 119
Query: 170 EKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
+E + V + + Q W LT + AA DV +L H + KL+Q+
Sbjct: 120 TQELIGVDISKQQQMSDWGAAELTAAQLDYAASDVLYL----HRLRDKLDQR 167
>gi|350418690|ref|XP_003491936.1| PREDICTED: hypothetical protein LOC100746784 [Bombus impatiens]
Length = 1271
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 34/196 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ D YL+D + + + S I KV H
Sbjct: 278 AVDLEHHSYRSFQGITCLMQISTGDTDYLIDTL-SLRSELHELNEIFTKSTILKVFHGAD 336
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D + L + + N+ DT + K+ Y+S LL YC +
Sbjct: 337 LDIQWLQRDLSLYVVNMFDT---------HQAAKQLNMPYLSLAYLLK--HYCNVD---- 381
Query: 172 EEVRVLLRQDPQF----WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVR 227
D F W RPL E +++ A +D +L YI + L + + +
Sbjct: 382 --------PDKHFQMADWRIRPLPEKLMKYAREDTHYLLYIKDLLRNALIDVANGQINIL 433
Query: 228 GALYCRCFCINENDYV 243
A+Y R I + Y+
Sbjct: 434 KAVYDRSTEICKKTYI 449
>gi|429104996|ref|ZP_19166865.1| Ribonuclease D [Cronobacter malonaticus 681]
gi|426291719|emb|CCJ92978.1| Ribonuclease D [Cronobacter malonaticus 681]
Length = 409
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 32/205 (15%)
Query: 45 SSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKAC--KPALESS 101
++ Q + D E V + L ++QL + + L+D + T+ + L+
Sbjct: 54 TARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPL----TITDWAPFQALLQDQ 109
Query: 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADP 161
+TK +H D E FG+ +DTQ+ SFVG P
Sbjct: 110 NVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQV-----------------LASFVG---HP 149
Query: 162 RYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
CG + + V+L + W RPLTE AA DV +L I H +M+++ +
Sbjct: 150 LSCGFATLVEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREA 209
Query: 220 SLWYLAVRGALYCRCFCINENDYVD 244
A+ CR + +D
Sbjct: 210 GWLTAAIN---ECRLMTQRRGEVLD 231
>gi|418752957|ref|ZP_13309213.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|422002805|ref|ZP_16350040.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
gi|409966640|gb|EKO34481.1| 3'-5' exonuclease [Leptospira santarosai str. MOR084]
gi|417258550|gb|EKT87937.1| ribonuclease D [Leptospira santarosai serovar Shermani str. LT 821]
Length = 388
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
+C++Q++ Y++D ++ + E+ I K+ H D +AL FG +
Sbjct: 43 SKVCLIQISAKGKNYILDPLKLRN--LDGLGTLFENKKILKIFHSAIDDIKALKKDFGFQ 100
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
N+ DT + L++ ++ DY Y I +KE+
Sbjct: 101 FQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSKKEQ--------KSN 141
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
W RPL + ++ AA D +L I+ M +L +++L+ A+
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWGKMKDELIKRNLYEEAL 183
>gi|258621252|ref|ZP_05716286.1| ribonuclease D [Vibrio mimicus VM573]
gi|424807207|ref|ZP_18232615.1| ribonuclease D [Vibrio mimicus SX-4]
gi|258586640|gb|EEW11355.1| ribonuclease D [Vibrio mimicus VM573]
gi|342325149|gb|EGU20929.1| ribonuclease D [Vibrio mimicus SX-4]
Length = 373
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 89 TVVKACKP---ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
TV+ P L+ + + KV+H C D E FG +VDTQI + + G
Sbjct: 58 TVINEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYG 113
Query: 146 RSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
S F L+ D + E R D W RPL++ + AA DV +L
Sbjct: 114 LS----TGFAALVQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYL 159
Query: 206 PYIYHNMMKKLNQQSLWYLAVR 227
+Y +++++ W A++
Sbjct: 160 LPMYEKLLERVTHAGWWEAALQ 181
>gi|418746085|ref|ZP_13302416.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
gi|410792916|gb|EKR90840.1| 3'-5' exonuclease [Leptospira santarosai str. CBC379]
Length = 388
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
+C++Q++ Y++D ++ + E+ I K+ H D +AL FG +
Sbjct: 43 SKVCLIQISAKGKNYILDPLKLRN--LDGLGTLFENKKILKIFHSAIDDIKALKKDFGFQ 100
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
N+ DT + L++ ++ DY Y I +KE+
Sbjct: 101 FQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSKKEQ--------KSN 141
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
W RPL + ++ AA D +L I+ M +L +++L+ A+
Sbjct: 142 WEKRPLEKSQLQYAALDTVYLETIWGKMKDELIKRNLYEEAL 183
>gi|421110867|ref|ZP_15571356.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
gi|410803772|gb|EKS09901.1| 3'-5' exonuclease [Leptospira santarosai str. JET]
Length = 366
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 21/162 (12%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
+C++Q++ Y++D ++ + E+ I K+ H D +AL FG +
Sbjct: 21 SKVCLIQISAKGKNYILDPLKLRN--LDGLGTLFENKKILKIFHSAIDDIKALKKDFGFQ 78
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
N+ DT + L++ ++ DY Y I +KE+
Sbjct: 79 FQNIADTGFSSRLLDHEQYSLTYLVDY-----------YHKIKLSKKEQ--------KSN 119
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV 226
W RPL + ++ AA D +L I+ M +L +++L+ A+
Sbjct: 120 WEKRPLEKSQLQYAALDTVYLETIWGKMKDELIKRNLYEEAL 161
>gi|183219597|ref|YP_001837593.1| putative ribonuclease D [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189909736|ref|YP_001961291.1| ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167774412|gb|ABZ92713.1| Ribonuclease III [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167778019|gb|ABZ96317.1| Putative ribonuclease D (RNase D) [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 406
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
+C++Q+ YL+D ++ T + A P E I K+ H + D +AL FG K
Sbjct: 45 VCLIQINSNGKNYLIDPLKI--TNLSALGPLFEDPNILKIFHSAQDDIKALKRDFGFKFV 102
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
N DT I+ L+ ++ +SFV Y ++ + E+ W
Sbjct: 103 NTADTMISSRLLSLEQSS-------LSFVV----EHYHKVTLSKVEQ--------KSNWE 143
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222
RPL + ++ AA D +L I+ M + L ++SL+
Sbjct: 144 IRPLQKQQLKYAALDTAYLESIWLKMEEDLKRRSLY 179
>gi|257454439|ref|ZP_05619701.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60]
gi|257448205|gb|EEV23186.1| 3'-5' exonuclease [Enhydrobacter aerosaccus SK60]
Length = 403
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 81/221 (36%), Gaps = 45/221 (20%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAI 84
+PIH V L A L E+ I D E + L ++Q+ AIYL+DA
Sbjct: 18 LPIHWVKTQDALFA--LLDDLEQVDTIALDTEFIKRDTFFPILALIQINTGKAIYLIDA- 74
Query: 85 QGGETVVKACKPALESSYI------TKVIHDCKRDSEALYFQFGI-KLHNVVDTQIAYSL 137
K LE + T V+H C D Y + L NV DTQI
Sbjct: 75 ---------PKLYLEEFWEVLADIPTVVLHACGEDLGIYYLLSNLPALRNVFDTQIG--- 122
Query: 138 IEEQEGRKRSPDDYISFVGLLADPRYCGI--SYQEKEEVRVLLRQDPQFWTYRPLTELMV 195
+G L G S QE V V + W RPLT
Sbjct: 123 -----------------LGFLTGENSLGYQKSLQETIAVHVDKGESQSDWLQRPLTPEQE 165
Query: 196 RAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGALYCRCFC 236
A DDVR+L ++ + +L +Q LW AV C+ +
Sbjct: 166 SYAVDDVRYLLPMFVAIKTQLIEQGLWQYAVED---CQSYT 203
>gi|254422868|ref|ZP_05036586.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
gi|196190357|gb|EDX85321.1| 3'-5' exonuclease, putative [Synechococcus sp. PCC 7335]
Length = 207
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QL P + G++ K LE ITK+ H + D L GI
Sbjct: 41 LCLIQLCDPGGYVCAIRTERGQSSAPNLKQLLEEKNITKIFHFARFDLATLQHHLGIVTA 100
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLL---RQDPQ 183
V T+IA + R SP G+ KE + + L +Q
Sbjct: 101 PVFCTKIASKI-----ARTYSPSH--------------GLKSLVKELIGIELDKSQQSSD 141
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ L++ + AA+DVR+L + + + + L ++ W LA
Sbjct: 142 WGNAAALSDEQLSYAANDVRYLYVLQNKLTEMLKREGRWTLA 183
>gi|365882334|ref|ZP_09421579.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS 375]
gi|365289362|emb|CCD94110.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS 375]
Length = 382
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++Q+A D ++DA+ G +KA + + + KV H ++D E ++ + GI H
Sbjct: 39 LCVVQMASADEAVVIDALAEG-IDLKAFFELMGNEKVLKVFHAARQDIEIIWHRAGIVPH 97
Query: 127 NVVDTQIA 134
+ DTQ+A
Sbjct: 98 PIFDTQVA 105
>gi|296215361|ref|XP_002807292.1| PREDICTED: LOW QUALITY PROTEIN: exonuclease 3'-5' domain-containing
protein 2 [Callithrix jacchus]
Length = 621
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDL-CRHGSLC 68
SS P + ++ +VT + + + +EP +L V+G DCE V+L R L
Sbjct: 63 SSAPRSSWEERILKAKVVTVSQEAEWDQIEPLLRSELQDFPVLGIDCEWVNLEGRASPLS 122
Query: 69 IMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P I L I GG+T+ + L I KV C D+ L +G+
Sbjct: 123 LLQMASPSGLCVLIRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLV 182
Query: 125 LHNVVD 130
+ +D
Sbjct: 183 VRGCLD 188
>gi|440287253|ref|YP_007340018.1| ribonuclease D [Enterobacteriaceae bacterium strain FGI 57]
gi|440046775|gb|AGB77833.1| ribonuclease D [Enterobacteriaceae bacterium strain FGI 57]
Length = 371
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 99/268 (36%), Gaps = 55/268 (20%)
Query: 52 IGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E V + L ++QL L+D + G T + L+ + ITK +H
Sbjct: 21 IALDTEFVRTRTYYPQLGLIQLFDGQQTSLIDPL--GITDWSPLQAILQDTRITKFLHAG 78
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D E FG ++DTQI + GR S F ++ + Y G+ +
Sbjct: 79 SEDLEVFLNVFGSMPKPLIDTQILAAFC----GRPMS----WGFAAMVEE--YTGVKLDK 128
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGAL 230
E R D W RPLTE AA DV +L I H +M + Q + AL
Sbjct: 129 SES-----RTD---WLARPLTERQCIYAAADVWYLLPIAHKLMAETEQAG----RLEAAL 176
Query: 231 -YCRCFCINENDYVD----WPP--------------LPPVPDY---------LIVEGDVP 262
CR + VD W L + D+ L V V
Sbjct: 177 DECRLMQQRRQEVVDPAEAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVR 236
Query: 263 EEEILSILDVPPGKMGRI--IGRRGSSI 288
EE + S+ PG MG + +G GS I
Sbjct: 237 EENLWSVARYMPGSMGELDSLGLSGSEI 264
>gi|348514838|ref|XP_003444947.1| PREDICTED: exosome component 10 [Oreochromis niloticus]
Length = 892
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 30/160 (18%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ +++D ++ + + A I KV H
Sbjct: 311 AVDLEHHSYRSFLGLTCLMQISTRGEDFIIDTLEL-RSEMYILNEAFTDPSIVKVFHGAD 369
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQ 169
D E L FG+ + N+ DT A + R D++ F + +D RY
Sbjct: 370 SDIEWLQRDFGLYVVNLFDTHQASRAL----NLARHSLDHLLKHFCSVDSDKRYQLAD-- 423
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
W RPL + MV+ A D +L YIY
Sbjct: 424 ---------------WRVRPLPDEMVQYARTDTHYLLYIY 448
>gi|414173189|ref|ZP_11427952.1| ribonuclease D [Afipia broomeae ATCC 49717]
gi|410891841|gb|EKS39637.1| ribonuclease D [Afipia broomeae ATCC 49717]
Length = 382
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 28 IHIVTNASQLPAEFLEPSSERQLVIGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQG 86
+ I+T +L A + R VI D E + + + LC++QLA D +VDA+
Sbjct: 1 MEIITTTDELTAVCNRLAKHR--VITVDTEFLRETTYYPLLCVVQLASADEAAVVDALAE 58
Query: 87 GETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKR 146
G +K + + + KV H ++D E ++ + GI H V DTQ+A ++
Sbjct: 59 G-IDLKPFFDLMANENVLKVFHAARQDIEIIFHRAGIIPHPVFDTQVAAMVL-------- 109
Query: 147 SPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLP 206
D I++ L+ R G + W+ RPLT+ + A DV L
Sbjct: 110 GYGDSIAYDQLV--ERITGHRPDKTHRF--------TDWSNRPLTQDQITYAVADVTHLR 159
Query: 207 YIYHNMMKKLNQQ 219
++ + L ++
Sbjct: 160 DVFAALDADLKKR 172
>gi|262166092|ref|ZP_06033829.1| ribonuclease D [Vibrio mimicus VM223]
gi|262025808|gb|EEY44476.1| ribonuclease D [Vibrio mimicus VM223]
Length = 328
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 89 TVVKACKP---ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
TV+ P L+ + + KV+H C D E FG +VDTQI + + G
Sbjct: 13 TVIDEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYG 68
Query: 146 RSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
S F L+ D + E R D W RPL++ + AA DV +L
Sbjct: 69 LS----TGFAALVQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYL 114
Query: 206 PYIYHNMMKKLNQQSLWYLAVR 227
+Y +++++ W A++
Sbjct: 115 LPMYEKLLERVTHAGWWEAALQ 136
>gi|49474343|ref|YP_032385.1| ribonuclease D [Bartonella quintana str. Toulouse]
gi|49239847|emb|CAF26240.1| Ribonuclease D [Bartonella quintana str. Toulouse]
Length = 404
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D + + +K + I KV H ++D E +Y G+ +
Sbjct: 60 LCLIQLASPDVTMLIDPM-AQDMDLKPFFDLMVDEKIVKVFHAARQDIEIIYHLGGVIPY 118
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA S+ D IS+ ++ R G +Q + R W+
Sbjct: 119 PLFDTQIAGSIC--------GFGDSISYDQIVQ--RCTG--HQLDKSSRF------TDWS 160
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
RPL+E + A DV +L +Y + K+L N++ W
Sbjct: 161 CRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRMHW 198
>gi|290982318|ref|XP_002673877.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
gruberi]
gi|284087464|gb|EFC41133.1| 3'-5' exonuclease and HRDC domain-containing protein [Naegleria
gruberi]
Length = 956
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 34/174 (19%)
Query: 53 GFDCEGVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSY---- 102
G D +DL +H G +C+MQ++ +L+D ++ ++ L SS+
Sbjct: 360 GQDAFAIDLEQHSYRSFQGFVCLMQISTRSEDFLIDTLE-----LRQHMHILNSSFTHPK 414
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR 162
I KV+H D L F I N+ DT A + S LL
Sbjct: 415 IVKVMHGSDCDILWLQRDFAIYCVNLFDTGQACRTLALPG---------CSLAYLLK--H 463
Query: 163 YCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
YCGI +K ++ W RPL MV+ A +D +L YIY + + +
Sbjct: 464 YCGIDADKKYQLAD--------WRVRPLPSEMVKYAREDTHYLLYIYDRLRQDI 509
>gi|50949608|emb|CAH10568.1| hypothetical protein [Homo sapiens]
Length = 272
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LC 68
SS P + ++ +VT + + + +EP +L V+G DCE V+L S L
Sbjct: 63 SSAPRSSWKERILKAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLS 122
Query: 69 IMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P + L I GG+T+ + L I KV C D+ L +G+
Sbjct: 123 LLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLV 182
Query: 125 LHNVVD 130
+ +D
Sbjct: 183 VRGCLD 188
>gi|367476258|ref|ZP_09475649.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS 285]
gi|365271411|emb|CCD88117.1| Ribonuclease D (RNase D) [Bradyrhizobium sp. ORS 285]
Length = 382
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA D ++DA+ G +K+ + + + KV H ++D E ++ + GI H
Sbjct: 39 LCVVQLASADEAVVIDALAEG-IDLKSFFELMANEKVLKVFHAARQDIEIIWHRAGIVPH 97
Query: 127 NVVDTQIA 134
+ DTQ+A
Sbjct: 98 PIFDTQVA 105
>gi|375131511|ref|YP_004993611.1| ribonuclease D [Vibrio furnissii NCTC 11218]
gi|315180685|gb|ADT87599.1| ribonuclease D [Vibrio furnissii NCTC 11218]
Length = 371
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 21/176 (11%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + L ++QL + + L+D + E + L+ + + KV+H
Sbjct: 24 VVMLDTEFVRTRTFYPQLGLIQLFDGENLSLIDPLAMDE--MTPFVELLQDTSVLKVLHA 81
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E FG +VDTQI + + G S F L D +
Sbjct: 82 CGEDIEVFKTSFGCVPFPMVDTQIMAAFL----GYGLS----TGFAALAHDLLNVELDKS 133
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E R D W RPL++ + AA DV +L +Y +++K+ Q W A
Sbjct: 134 ES-------RTD---WLARPLSQKQLEYAAADVFYLMPMYEQLLEKVTQAGWWEAA 179
>gi|341889055|gb|EGT44990.1| hypothetical protein CAEBREN_17638 [Caenorhabditis brenneri]
Length = 864
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 28/186 (15%)
Query: 52 IGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
D E D+ + G C++Q++ D +++D + + P + I KV+H
Sbjct: 293 FAVDLEHNDMRSYLGLSCLIQISTRDEDFIIDPFPIWDEIGILNDP-FANPTILKVLHGS 351
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D L FG+ + N+ DT +A + L P++ ++Y
Sbjct: 352 DNDVLWLQRDFGVHIVNLFDTYVA--------------------MKKLKFPKF-NLAYLV 390
Query: 171 KEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRG 228
V+L + Q W RPL++ M+ A +D +L Y Y + ++L +Q+ LA
Sbjct: 391 SRFADVILDKQYQLADWRARPLSKAMINYAREDTHYLLYCYDMLREQLLKQNEQDLA--- 447
Query: 229 ALYCRC 234
++Y C
Sbjct: 448 SMYSEC 453
>gi|449307951|ref|YP_007440307.1| ribonuclease D [Cronobacter sakazakii SP291]
gi|449097984|gb|AGE86018.1| ribonuclease D [Cronobacter sakazakii SP291]
Length = 373
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 28/203 (13%)
Query: 45 SSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYI 103
++ Q + D E V + L ++QL + + L+D + T + L+ +
Sbjct: 18 TARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPL--AITDWAPFQALLQDQNV 75
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
TK +H D E FG+ +DTQ+ SFVG P
Sbjct: 76 TKFLHAGSEDLEVFQNAFGMMPDPFIDTQV-----------------LASFVG---HPLS 115
Query: 164 CGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
CG + + V+L + W RPLTE AA DV +L I H +M+++ +
Sbjct: 116 CGFATLVEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGW 175
Query: 222 WYLAVRGALYCRCFCINENDYVD 244
A+ CR + +D
Sbjct: 176 LTAAIN---ECRLMTQRRGEVLD 195
>gi|359780230|ref|ZP_09283456.1| ribonuclease D [Pseudomonas psychrotolerans L19]
gi|359371542|gb|EHK72107.1| ribonuclease D [Pseudomonas psychrotolerans L19]
Length = 384
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 20/161 (12%)
Query: 69 IMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128
++Q+ + YLVD + G+ A LE + KV+H C D E L G +
Sbjct: 45 LIQIGDGEQAYLVDPLCIGDWTPFAA--LLEDPAVVKVLHACSEDLEVLLRLTGSLPQPL 102
Query: 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYR 188
DTQ+A + + G S + + L+A+ I K+E R W R
Sbjct: 103 YDTQLAAAYL----GLAHS----MGYSRLVAEVLKIDIP---KDETR-------SDWLQR 144
Query: 189 PLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRGA 229
PLT L R AA DV +L +Y + +L+ Q +L GA
Sbjct: 145 PLTPLQERYAAADVTYLVDVYLYLDARLDDQRRAWLLEDGA 185
>gi|323495020|ref|ZP_08100109.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
gi|323310677|gb|EGA63852.1| ribonuclease D [Vibrio brasiliensis LMG 20546]
Length = 346
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 18/128 (14%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG + +VDTQ+ + + G S F L
Sbjct: 45 LQDTSVLKVLHACGEDLEVFQNSFGCLPYPMVDTQLMAAFL----GHGLS----TGFAAL 96
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Y + + E R D W RPLT+ + AA DV +L +Y + + +
Sbjct: 97 VNE--YLNVELDKSES-----RTD---WLARPLTDKQLEYAAADVYYLLPLYEQLFENIT 146
Query: 218 QQSLWYLA 225
Q W A
Sbjct: 147 QAGWWQAA 154
>gi|315604318|ref|ZP_07879384.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
gi|315314024|gb|EFU62075.1| ribonuclease D [Actinomyces sp. oral taxon 180 str. F0310]
Length = 414
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 27/176 (15%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPD-AIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
+ D E R+GS ++Q+ D +L+D + + A P ++ ++ +HD
Sbjct: 51 VALDVERAQGFRYGSDPYLVQIRREDVGTFLIDTHALPD--LSALAPGVDDVWL---LHD 105
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C +D L Q G+ ++ DT+IA L+ + + + + +GL+ D +Q
Sbjct: 106 CLQDLPNLR-QVGLVPSSLFDTEIAARLVGLERFGLAAVAEQVLGLGLVKD-------HQ 157
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ W+ RPL +R AA DV L +Y+ + K+L+Q W A
Sbjct: 158 ASD------------WSLRPLPPEWLRYAALDVELLTELYYRLSKRLDQMGRWEWA 201
>gi|294141241|ref|YP_003557219.1| ribonuclease D [Shewanella violacea DSS12]
gi|293327710|dbj|BAJ02441.1| ribonuclease D [Shewanella violacea DSS12]
Length = 369
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR 162
IT V+H C D E + +N+ D+QIA +L G Y V D
Sbjct: 76 ITTVLHSCSEDLEVFARNGACQPYNLFDSQIAAALCGFGHGL-----GYAKLVEQTLD-- 128
Query: 163 YCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
IS + E R D W RPL+E + AA+DV +L +Y +++KL +Q
Sbjct: 129 ---ISLDKGES-----RTD---WMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQEQ 174
>gi|790213|gb|AAB65809.1| ORFQ, partial [Dichelobacter nodosus]
Length = 289
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
VIH +D E ++ + + DTQI +SLI SP IS++G + Y G
Sbjct: 10 VIHAASQDLELMHLHGQLLPNMFRDTQIGFSLI--------SPHKAISYLGFVQ--HYLG 59
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---MKKLNQQSLW 222
I + E R D W RPLT + AA+DV L Y + +++LN+ W
Sbjct: 60 IDLDKSET-----RSD---WLARPLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHWW 111
>gi|395849609|ref|XP_003797414.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 [Otolemur
garnettii]
Length = 625
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 10/136 (7%)
Query: 4 SPSHQTHIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGV 59
SPS ++ + S+ P ++ +VT + + + +EP +L V+G DCE V
Sbjct: 57 SPSEESQLS-STAPRASWEKRLLEAKVVTVSQEAEWDHIEPLLRSELEDFPVLGIDCEWV 115
Query: 60 DL-CRHGSLCIMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDS 114
+L + L ++Q+A P + L I GG+T+ + L I KV C D+
Sbjct: 116 NLEGKANPLSLLQMASPSGLCVLVRLPKLICGGKTLPRTLLDVLADGTILKVGVGCSEDA 175
Query: 115 EALYFQFGIKLHNVVD 130
L +G+ + +D
Sbjct: 176 SKLLQDYGLVVRGCLD 191
>gi|353327707|ref|ZP_08970034.1| ribonuclease D [Wolbachia endosymbiont wVitB of Nasonia
vitripennis]
Length = 376
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 19/171 (11%)
Query: 52 IGFDCEGV--DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + +L + L ++Q+++ + ++VDA+ E + K + + I KV H
Sbjct: 8 IAIDTEFIRNNLTYYPKLSLIQISYGEKSFIVDAL-VPEIDLSFIKKMMLNQGIIKVFHS 66
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C++D E+L F + DTQ+A D+I + ++ +Y GI+
Sbjct: 67 CRQDIESLLTVFKCVPTPIFDTQVAAMFCHYYH-------DFIGYSKVV--EQYQGIALD 117
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
+ ++ W RPL+E + A +DV +L +Y + KL + +
Sbjct: 118 K-------IKAKNSDWLRRPLSEDQLDYAINDVVYLYDLYQILCNKLEESN 161
>gi|262171029|ref|ZP_06038707.1| ribonuclease D [Vibrio mimicus MB-451]
gi|449144495|ref|ZP_21775310.1| ribonuclease D [Vibrio mimicus CAIM 602]
gi|261892105|gb|EEY38091.1| ribonuclease D [Vibrio mimicus MB-451]
gi|449079996|gb|EMB50915.1| ribonuclease D [Vibrio mimicus CAIM 602]
Length = 381
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 89 TVVKACKP---ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
TV+ P L+ + + KV+H C D E FG +VDTQI + + G
Sbjct: 66 TVIDEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYG 121
Query: 146 RSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
S F L+ D + E R D W RPL++ + AA DV +L
Sbjct: 122 LS----TGFAALVQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYL 167
Query: 206 PYIYHNMMKKLNQQSLWYLAVR 227
+Y +++++ W A++
Sbjct: 168 LPMYEKLLERVTHAGWWEAALQ 189
>gi|417948703|ref|ZP_12591846.1| ribonuclease D [Vibrio splendidus ATCC 33789]
gi|342809314|gb|EGU44435.1| ribonuclease D [Vibrio splendidus ATCC 33789]
Length = 372
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + L ++QL + + L+D I E + L+ + + KV+H
Sbjct: 24 VVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIALDE--MTPFVGLLKDASVLKVLHA 81
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E F +VDTQI + + G S F L+++ + G+
Sbjct: 82 CGEDLEVFQNAFDCTPTPMVDTQIMAAFL----GHGLS----TGFAALVSE--FVGVDLD 131
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ E R D W RPL++ + AA DV +L +Y+ +++K+ + W A
Sbjct: 132 KSES-----RTD---WLARPLSQKQLNYAAADVHYLMPMYNKLLEKVMEAGWWEAA 179
>gi|429096753|ref|ZP_19158859.1| Ribonuclease D [Cronobacter dublinensis 582]
gi|426283093|emb|CCJ84972.1| Ribonuclease D [Cronobacter dublinensis 582]
Length = 373
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 77/203 (37%), Gaps = 28/203 (13%)
Query: 45 SSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYI 103
++ Q + D E V + L ++QL + + L+D + T + L+ +
Sbjct: 18 TARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLT--ITDWAPFQALLQDQNV 75
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
TK +H D E FG+ +DTQ+ SFVG P
Sbjct: 76 TKFLHAGSEDLEVFQNAFGMMPDPFIDTQVV-----------------ASFVG---HPLS 115
Query: 164 CGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
CG + + V+L + W RPLTE AA DV +L I H +M+++
Sbjct: 116 CGFATLVEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVRDAG- 174
Query: 222 WYLAVRGALYCRCFCINENDYVD 244
W A CR + +D
Sbjct: 175 WLTAALNE--CRLMTQRRGEVLD 195
>gi|222825102|dbj|BAH22259.1| putative ribonuclease D [Wolbachia endosymbiont of Cadra cautella]
Length = 394
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 19/171 (11%)
Query: 52 IGFDCEGV--DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + +L + L ++Q+++ + ++VDA+ E + K + + I KV H
Sbjct: 24 IAIDTEFIRNNLTYYPKLSLIQISYGEKSFIVDAL-VPEIDLSFIKKMMLNQGIIKVFHS 82
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C++D E+L F + DTQ+A D+I + ++ +Y GI+
Sbjct: 83 CRQDIESLLTVFKCVPTPIFDTQVAAMFCHYYH-------DFIGYSKVV--EQYQGIALD 133
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
+ ++ W RPL+E + A +DV +L +Y + KL + +
Sbjct: 134 K-------IKAKNSDWLRRPLSEDQLDYAINDVVYLYDLYQILCNKLEESN 177
>gi|429110648|ref|ZP_19172418.1| Ribonuclease D [Cronobacter malonaticus 507]
gi|426311805|emb|CCJ98531.1| Ribonuclease D [Cronobacter malonaticus 507]
Length = 369
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 32/205 (15%)
Query: 45 SSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKAC--KPALESS 101
++ Q + D E V + L ++QL + + L+D + T+ + L+
Sbjct: 14 TARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPL----TITDWAPFQALLQDQ 69
Query: 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADP 161
+TK +H D E FG+ +DTQ+ SFVG P
Sbjct: 70 NVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQV-----------------LASFVG---HP 109
Query: 162 RYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
CG + + V+L + W RPLTE AA DV +L I H +M+++ +
Sbjct: 110 LSCGFATLVEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREA 169
Query: 220 SLWYLAVRGALYCRCFCINENDYVD 244
A+ CR + +D
Sbjct: 170 GWLTAAIN---ECRLMTQRRGEVLD 191
>gi|258626516|ref|ZP_05721356.1| ribonuclease D [Vibrio mimicus VM603]
gi|258581227|gb|EEW06136.1| ribonuclease D [Vibrio mimicus VM603]
Length = 385
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 89 TVVKACKP---ALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
TV+ P L+ + + KV+H C D E FG +VDTQI + + G
Sbjct: 70 TVIDEMTPFVELLQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYG 125
Query: 146 RSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
S F L+ D + E R D W RPL++ + AA DV +L
Sbjct: 126 LS----TGFAALVQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYL 171
Query: 206 PYIYHNMMKKLNQQSLWYLAVR 227
+Y +++++ W A++
Sbjct: 172 LPMYEKLLERVTHAGWWEAALQ 193
>gi|170717427|ref|YP_001784527.1| ribonuclease D [Haemophilus somnus 2336]
gi|168825556|gb|ACA30927.1| ribonuclease D [Haemophilus somnus 2336]
Length = 381
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 45 SSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYI 103
++++ VI D E V + L ++QL + + L+D + + L + +
Sbjct: 29 QAQQKTVIALDTEFVRTKSFYPKLGLIQLYDGEQVSLIDPFELND--FSPFIQLLANQKV 86
Query: 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRY 163
TKV+H C D E F ++DTQI + + Q G + I LL
Sbjct: 87 TKVLHACSEDLEVFQHYFQQLPTPMLDTQIMAAFL--QHG------NSIGLATLLK---- 134
Query: 164 CGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWY 223
Y + E + + R + W RPL+++ + AA DV +L +Y M +KL Q S W
Sbjct: 135 ---HYFKLEIDKGISRTN---WLARPLSDVQLHYAAADVWYLLPLYQRMQQKLAQTS-WQ 187
Query: 224 LAVRG 228
AV+
Sbjct: 188 SAVQN 192
>gi|67921652|ref|ZP_00515170.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
gi|416385494|ref|ZP_11684791.1| Ribonuclease D related protein [Crocosphaera watsonii WH 0003]
gi|67856764|gb|EAM52005.1| 3'-5' exonuclease [Crocosphaera watsonii WH 8501]
gi|357264874|gb|EHJ13706.1| Ribonuclease D related protein [Crocosphaera watsonii WH 0003]
Length = 214
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 19/177 (10%)
Query: 51 VIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
+ D E + L + LC++QL P I+ G+T K LE+ I K+ H
Sbjct: 31 ALAIDTETMGLVPQRDRLCLVQLCDPSGYVTAIRIERGQTEAPNLKQLLENKNIVKIFHY 90
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D + F ++ + T++A L G GL + Q
Sbjct: 91 ARFDVGQFKYNFSVETDPIFCTKVASKLARTYTGSH----------GLKS-------LVQ 133
Query: 170 EKEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E E V + W + L+E + AA+DVR+L + ++ L ++ W +A
Sbjct: 134 ELEGVELDKSSQSSDWGNSQNLSEAQLSYAANDVRYLIQLREQLITMLKREERWEIA 190
>gi|403530625|ref|YP_006665154.1| ribonuclease D [Bartonella quintana RM-11]
gi|403232696|gb|AFR26439.1| ribonuclease D [Bartonella quintana RM-11]
Length = 419
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 21/158 (13%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QLA PD L+D + + +K + I KV H ++D E +Y G+ +
Sbjct: 75 LCLIQLASPDVTMLIDPM-AQDMDLKPFFDLMVDEKIVKVFHAARQDIEIIYHLGGVIPY 133
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWT 186
+ DTQIA S+ D IS+ ++ R G +Q + R W+
Sbjct: 134 PLFDTQIAGSIC--------GFGDSISYDQIVQ--RCTG--HQLDKSSRF------TDWS 175
Query: 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLW 222
RPL+E + A DV +L +Y + K+L N++ W
Sbjct: 176 CRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRMHW 213
>gi|389749312|gb|EIM90489.1| hypothetical protein STEHIDRAFT_50846 [Stereum hirsutum FP-91666
SS1]
Length = 197
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 61/138 (44%), Gaps = 25/138 (18%)
Query: 45 SSERQLVIGFDCEGVDLCRHGS----LCIMQLAFPDAIYLVDAIQGGETVV--------- 91
SS R L FDCEGV L G + I P D + G+T +
Sbjct: 23 SSSRTLY--FDCEGVKLGTAGGTLSLITIRSAPSPSNSRQSDGDRNGQTFIFDITSLTLA 80
Query: 92 ---KACKPA---LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRK 145
+ KP L S + KV+ D + DS AL+ F + L NV+D Q+ I +E R
Sbjct: 81 RQPVSLKPLFALLTSPKVLKVVWDGRMDSSALHHYFRVNLRNVLDLQLVD--IHSRELRG 138
Query: 146 RSPDDYIS-FVGLLADPR 162
+ +++ F+G + DPR
Sbjct: 139 ETIQEHVKRFIGGV-DPR 155
>gi|342180559|emb|CCC90035.1| putative ribosomal RNA processing protein 6 [Trypanosoma congolense
IL3000]
Length = 745
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 67/170 (39%), Gaps = 22/170 (12%)
Query: 48 RQLVIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKV 106
++ I D E D + G C+MQ++ +++D ++ + + P I KV
Sbjct: 261 KETEIAVDLEHHDFYSYQGFTCLMQISSRTEDFIIDCLKL-RSHMHLLAPVFLEPSIVKV 319
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGI 166
+H + D L FG+ + N+ DT +A + ++ A +C +
Sbjct: 320 LHGAREDIRWLQKDFGLYVVNLFDTSVALQNL------------HMPHSLAFAVDHFCQV 367
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+K + W RP+ M+ A D FL Y+Y + + L
Sbjct: 368 KLNKKYQT--------ADWRVRPIPAEMISYAQQDTHFLLYVYDRLKQLL 409
>gi|374623203|ref|ZP_09695717.1| ribonuclease D [Ectothiorhodospira sp. PHS-1]
gi|373942318|gb|EHQ52863.1| ribonuclease D [Ectothiorhodospira sp. PHS-1]
Length = 381
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Query: 66 SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKL 125
LC++Q+A PD + +D + + + L + KV+H +D E Y + G
Sbjct: 41 QLCLIQVATPDLVACIDPLALED--LAPLDRLLRRPDLLKVLHAAGQDLEIFYHRDGTVP 98
Query: 126 HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185
+ DTQ+A SL+ D I + L+ G+ ++ R D W
Sbjct: 99 APIFDTQVAASLL--------GHGDQIGYGKLIQA--VLGVELEKGHS-----RTD---W 140
Query: 186 TYRPLTELMVRAAADDVRFLPYIY 209
RPL + AADDVR+L Y
Sbjct: 141 ARRPLDPEQLTYAADDVRYLAQAY 164
>gi|452989721|gb|EME89476.1| hypothetical protein MYCFIDRAFT_170935 [Pseudocercospora fijiensis
CIRAD86]
Length = 610
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFP--DAIYLVD-AIQG---------GETVVKACKPALE 99
+ +G L R G + I+ + P D +YL+D A+ G G + L+
Sbjct: 348 LALSLQGKPLGRGGDISIVTVYVPSFDYVYLLDVAVLGAASFNCSGTGTNSSTDLRRILQ 407
Query: 100 SSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAY 135
+ + K+I DC+ S AL+ +GIKL V+D Q+A+
Sbjct: 408 TPDVKKLIFDCRLPSIALHDGYGIKLDGVIDAQLAF 443
>gi|270012325|gb|EFA08773.1| hypothetical protein TcasGA2_TC006462 [Tribolium castaneum]
Length = 421
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 21/170 (12%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
+G D E D C++Q++ PD Y++DAI + + A + I K+ H
Sbjct: 95 LGVDVEYSDHGYKALTCLVQISTPDKDYIIDAI-ALKDELHALNEVFTNPDIVKIFHSAV 153
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D + L G+ + N+ DTQIA + G K+ + LL D
Sbjct: 154 NDLKWLQQDLGVFVVNLFDTQIAMKAL----GYKK-----LGLDALLQDYHVA------- 197
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
+ + + RQD + RPL A D +L YH + +L + +L
Sbjct: 198 -KDKTMQRQD---FRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANL 243
>gi|425470042|ref|ZP_18848924.1| putative 3'-5' exonuclease family protein [Microcystis aeruginosa
PCC 9701]
gi|389880090|emb|CCI39131.1| putative 3'-5' exonuclease family protein [Microcystis aeruginosa
PCC 9701]
Length = 209
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 18/160 (11%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QL P I G+T K +E I KV H + D L FGI
Sbjct: 43 LCLIQLCDPSGFVTAIRIFRGQTEAPNLKKVMEDERIEKVFHFARFDVAQLSHTFGIATQ 102
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW- 185
+ T+IA L Y S GL + QE E + + W
Sbjct: 103 PIFCTKIASKLART----------YTSSHGLKS-------LVQELEGIELDKTAQSSDWG 145
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
LT + AA+DVR+L + ++ L ++ W LA
Sbjct: 146 NAANLTPQQLSYAANDVRYLLSVRDTLIVMLQREERWELA 185
>gi|347755007|ref|YP_004862571.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
gi|347587525|gb|AEP12055.1| ribonuclease D [Candidatus Chloracidobacterium thermophilum B]
Length = 405
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 25/156 (16%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QL D VD + T P L I K++H +D L +
Sbjct: 38 LCLVQLGLRDRCVAVDPFRVNLT---PLAPLLTHPGIRKIVHAGGQDIVLLRRETDAIPV 94
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF-- 184
+V DTQIA + + E Y + R+ +S +K+ QF
Sbjct: 95 SVFDTQIAAAFLGYGEA-----TGYAALA-----QRFAKVSLSKKQ----------QFTD 134
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
WT RPL + A +DVR+L +Y ++++L Q
Sbjct: 135 WTRRPLLPEQIEYALNDVRYLFPVYDGLLEQLAQHG 170
>gi|91088803|ref|XP_968984.1| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 377
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 21/170 (12%)
Query: 52 IGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
+G D E D C++Q++ PD Y++DAI + + A + I K+ H
Sbjct: 95 LGVDVEYSDHGYKALTCLVQISTPDKDYIIDAIALKDE-LHALNEVFTNPDIVKIFHSAV 153
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D + L G+ + N+ DTQIA + G K+ + LL D
Sbjct: 154 NDLKWLQQDLGVFVVNLFDTQIAMKAL----GYKK-----LGLDALLQDYHVA------- 197
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL 221
+ + + RQD + RPL A D +L YH + +L + +L
Sbjct: 198 -KDKTMQRQD---FRRRPLPPKFKDYARVDSHYLIGFYHKLKNELIEANL 243
>gi|343471692|emb|CCD15945.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 604
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 66/170 (38%), Gaps = 22/170 (12%)
Query: 48 RQLVIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKV 106
++ I D E D + G C+MQ++ +++D ++ + + P I KV
Sbjct: 261 KETEIAVDLEHHDFYSYQGFTCLMQISSRTEDFIIDCLKL-RSHMHLLAPVFLEPSIVKV 319
Query: 107 IHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGI 166
+H + D L FG+ + N+ DT +A + + D +C +
Sbjct: 320 LHGAREDIRWLQKDFGLYVVNLFDTSVALQNLHMPHSLAFAVD------------HFCQV 367
Query: 167 SYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+K + W RP+ M+ A D FL Y+Y + + L
Sbjct: 368 KLNKKYQT--------ADWRVRPIPAEMISYAQQDTHFLLYVYDRLKQLL 409
>gi|116747862|ref|YP_844549.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
gi|116696926|gb|ABK16114.1| 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB]
Length = 295
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 22/196 (11%)
Query: 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQG 86
P+ ++ S+L A + S+ R L + + +C++Q++ P+ Y++D +
Sbjct: 3 PVVVIEKPSELDALVRQLSTARHLAVDTESNSF-YAYFDRVCLIQISSPERDYIIDPLSL 61
Query: 87 GETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKR 146
+ V E+ I KV+H D L F + + + DT IA L+ ++
Sbjct: 62 KDLSV--LGRLFENPRIEKVLHAASNDVLGLRRDFQFRFNGLFDTAIACKLLGYKQ---- 115
Query: 147 SPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLP 206
+ +L + G+S ++ + R D W RPL + A D +L
Sbjct: 116 -----LGLSKILET--HFGVSLNKRWQ-----RYD---WGKRPLVPDQLDYARLDTHYLI 160
Query: 207 YIYHNMMKKLNQQSLW 222
+ H + L + LW
Sbjct: 161 ALRHMLAADLQSRELW 176
>gi|425438767|ref|ZP_18819109.1| putative 3'-5' exonuclease family protein [Microcystis aeruginosa
PCC 9717]
gi|389718089|emb|CCH97907.1| putative 3'-5' exonuclease family protein [Microcystis aeruginosa
PCC 9717]
Length = 209
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 18/160 (11%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QL P + G+T K +E I KV H + D L FGI
Sbjct: 43 LCLIQLCDPSGFVTAIRVFRGQTEAPNLKKVMEDERIEKVFHFARFDVAQLSHTFGIATK 102
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW- 185
+ T+IA L Y S GL + QE E + + W
Sbjct: 103 PIFCTKIASKLART----------YTSSHGLKS-------LVQELEGIELDKTAQSSDWG 145
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
LT + AA+DVR+L + +M + ++ W LA
Sbjct: 146 NAANLTPKQLSYAANDVRYLLSVRDKLMVMMQREERWELA 185
>gi|355693387|gb|EHH27990.1| hypothetical protein EGK_18321 [Macaca mulatta]
Length = 540
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LC 68
SS P + ++ +VT + + + +EP +L V+G DCE V+L S L
Sbjct: 63 SSTPRSSWEEQILKAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLS 122
Query: 69 IMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P I L I GG+T+ + L I KV C D+ L +G+
Sbjct: 123 LLQMASPSGLCVLIRLPKLICGGKTLPRTLLNILADGTILKVGVGCSEDASKLLQDYGLV 182
Query: 125 LHNVVD 130
+ +D
Sbjct: 183 VRGCLD 188
>gi|28278907|gb|AAH45429.1| Zgc:55695 protein [Danio rerio]
Length = 500
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 80/198 (40%), Gaps = 38/198 (19%)
Query: 20 KPIDSVVPIHIVTNASQLPA--EFLEPSSERQLVIGFDCEGVDLCRH------GSLCIMQ 71
KPID P ++ L A E L ++E VDL H G C+MQ
Sbjct: 279 KPIDET-PCQFISTLEDLVALNEKLAKTTEF---------AVDLEHHSYRSFLGITCLMQ 328
Query: 72 LAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDT 131
++ + +++D ++ + + I KV H D E L FG+ + N+ DT
Sbjct: 329 ISTREEDFIIDTLEL-RSEMYILNETFTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 387
Query: 132 QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLT 191
A + R+ D++ V YC +S ++ ++ W RPL
Sbjct: 388 HHAARCL----NLGRNSLDHLLKV-------YCDVSSDKRYQLAD--------WRIRPLP 428
Query: 192 ELMVRAAADDVRFLPYIY 209
+ M++ A D +L Y+Y
Sbjct: 429 DEMLKYAQADTHYLLYVY 446
>gi|58617449|ref|YP_196648.1| ribonuclease D [Ehrlichia ruminantium str. Gardel]
gi|58417061|emb|CAI28174.1| Ribonuclease D [Ehrlichia ruminantium str. Gardel]
Length = 389
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 52 IGFDCEGVDLCR--HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E + C + L ++Q+A+ ++D + + + + + I K+ HD
Sbjct: 27 IAVDTEFIRNCNEYYPRLSLIQIAWSKGKCVIDVL-ADDIDLSVLESIFYNKEIVKIFHD 85
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
CK+D +AL +F + + D+QIA D+ + + L+A ++ +S
Sbjct: 86 CKQDIDALLTKFPRIPYPIFDSQIAAMFCAYY-------DNAVGYSKLVA--QFLDVSLD 136
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL--NQQSLWYL 224
++ L++ W RPL++ ++ A DDV +L +Y + L +++ LW+L
Sbjct: 137 -----KLTLKRSN--WLMRPLSDDKIQYALDDVVYLYELYQVLYDNLISSKRLLWFL 186
>gi|262404337|ref|ZP_06080892.1| ribonuclease D [Vibrio sp. RC586]
gi|262349369|gb|EEY98507.1| ribonuclease D [Vibrio sp. RC586]
Length = 381
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ + + KV+H C D E FG +VDTQI + + G S F L
Sbjct: 78 LQDTSVLKVLHACGEDLEVFQNAFGCTPFPMVDTQIMAAFL----GYGLS----TGFAAL 129
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ D + E R D W RPL++ + AA DV +L +Y +++++
Sbjct: 130 VQDQLQVELDKSES-------RTD---WLARPLSDKQLEYAAADVFYLLPMYEKLLERVT 179
Query: 218 QQSLWYLAVR 227
W A++
Sbjct: 180 HAGWWEAALQ 189
>gi|386782259|ref|NP_001247993.1| exonuclease 3'-5' domain-containing protein 2 [Macaca mulatta]
gi|380814300|gb|AFE79024.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Macaca
mulatta]
gi|384947988|gb|AFI37599.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Macaca
mulatta]
Length = 620
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LC 68
SS P + ++ +VT + + + +EP +L V+G DCE V+L S L
Sbjct: 63 SSTPRSSWEEQILKAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLS 122
Query: 69 IMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P I L I GG+T+ + L I KV C D+ L +G+
Sbjct: 123 LLQMASPSGLCVLIRLPKLICGGKTLPRTLLNILADGTILKVGVGCSEDASKLLQDYGLV 182
Query: 125 LHNVVD 130
+ +D
Sbjct: 183 VRGCLD 188
>gi|398819399|ref|ZP_10577954.1| ribonuclease D [Bradyrhizobium sp. YR681]
gi|398229963|gb|EJN16030.1| ribonuclease D [Bradyrhizobium sp. YR681]
Length = 383
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 49/168 (29%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALE---SSYITKVIHDCKRDSEALYFQFGI 123
LC++Q+A P+ ++DA+ G + KP E + + KV H ++D E ++ Q I
Sbjct: 39 LCVVQMASPEEAIVIDALAEGIDL----KPFFELMGNEGVLKVFHAARQDIEIIWHQANI 94
Query: 124 KLHNVVDTQIAY------------SLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
H V DTQ+A +L+E+ G + PD F
Sbjct: 95 IPHPVFDTQVAAMVLGYGDSIAYDALVEKVTGHR--PDKTHRFTD--------------- 137
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W+ RPLT+ + A DV L ++ + L ++
Sbjct: 138 -------------WSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKR 172
>gi|330837264|ref|YP_004411905.1| 3'-5' exonuclease [Sphaerochaeta coccoides DSM 17374]
gi|329749167|gb|AEC02523.1| 3'-5' exonuclease [Sphaerochaeta coccoides DSM 17374]
Length = 298
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 51 VIGFDCEG-VDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIH 108
++ D EG +L +G LC++QL YL+D + K LE+ I K++
Sbjct: 27 LVAMDFEGEFNLHVYGEHLCLIQLYDGHDFYLIDPFI---VSARTLKSFLEADDIEKIMF 83
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQI 133
DC D+ + Q+GI+L N+ D ++
Sbjct: 84 DCASDASLVRKQYGIQLRNICDLRV 108
>gi|114706944|ref|ZP_01439843.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
gi|114537494|gb|EAU40619.1| hypothetical protein FP2506_02794 [Fulvimarina pelagi HTCC2506]
Length = 207
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 64/175 (36%), Gaps = 18/175 (10%)
Query: 52 IGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+ D E + L LC++QL+ D V I G+T L + TK+ H
Sbjct: 20 VAIDTETLGLNTMRDRLCVVQLSPGDGTADVVQIAKGQTEAPNISALLADASKTKIFHYA 79
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D ALY FG + T+IA L R D VG
Sbjct: 80 RFDVAALYHAFGAMTEGIFCTKIASRLTRTYTDRHGLKDLARELVG-------------- 125
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
V + +Q W L+ + AA DV +L I + K+L ++ LA
Sbjct: 126 ---VDLSKQQQSSDWAVETLSPAQLDYAASDVLYLHDIMGALYKRLEREDRMDLA 177
>gi|428207535|ref|YP_007091888.1| 3'-5' exonuclease [Chroococcidiopsis thermalis PCC 7203]
gi|428009456|gb|AFY88019.1| 3'-5' exonuclease [Chroococcidiopsis thermalis PCC 7203]
Length = 208
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 23/188 (12%)
Query: 39 AEFLEPSSERQLVIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPA 97
A+F++ ++ I D E + L H LC++QL V I G+T K
Sbjct: 19 AQFMDATA-----IAVDTETMGLLVHRDRLCLVQLCDNRGRVAVVRIAKGQTDAPNLKQL 73
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
LE+ I K+ H + D L GI++ + T+IA L+ R S + + + L
Sbjct: 74 LEAD-IEKIFHFARFDLATLKHHLGIQVAPIFCTKIASKLVRTYTNR-HSLKELVQELEL 131
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
+ + Q + L+E +R AA+DVR+L + + + L
Sbjct: 132 VELDKSA---------------QSSDWGNAANLSEEQLRYAANDVRYLISLRQKLTEMLK 176
Query: 218 QQSLWYLA 225
++ W LA
Sbjct: 177 REERWELA 184
>gi|409075144|gb|EKM75528.1| hypothetical protein AGABI1DRAFT_79866 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 882
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G LC+MQ++ + ++VD I + + + I KV H +
Sbjct: 265 AVDLEHHSYRTYLGFLCLMQISTREEDFVVDVIALRDEM-EVLNEVFTDPKIVKVFHGAE 323
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIE-EQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D L F + + N+ DT A L+E + G + Y ++ D RY
Sbjct: 324 SDIVWLQQDFNLYVVNLFDTYHASKLLEFPRHGLANLLEMYCDYI---PDKRYQLAD--- 377
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL + M+ A D FL +IY N+ L
Sbjct: 378 --------------WRIRPLPKEMLEYARSDTHFLLFIYDNLRNAL 409
>gi|440475179|gb|ELQ43880.1| exosome complex exonuclease RRP6 [Magnaporthe oryzae Y34]
gi|440487108|gb|ELQ66914.1| exosome complex exonuclease RRP6 [Magnaporthe oryzae P131]
Length = 854
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 29/205 (14%)
Query: 21 PIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIY 79
PI P ++ T L E LE + + I D E D HG L +MQ++ + +
Sbjct: 251 PIAKSSPTYVDTYEGVL--EMLEDLKQAK-EIAVDLEHHDFRTYHGLLSLMQISTREKDW 307
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDT-QIAYSLI 138
+VD ++ ++ I KV H D L G+ + + DT A +L+
Sbjct: 308 IVDTLKPWRQQLEILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDTFHAAEALM 367
Query: 139 EEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVR 196
+ Y+ FV AD RY W RPL E M+
Sbjct: 368 YPSKSLA-----YLLKKFVDFEADKRYQTAD-----------------WRIRPLPEEMLY 405
Query: 197 AAADDVRFLPYIYHNMMKKLNQQSL 221
A D +L Y+Y M +L +QS+
Sbjct: 406 YARSDTHYLLYVYDMMRNELLRQSV 430
>gi|254487503|ref|ZP_05100708.1| ribonuclease D [Roseobacter sp. GAI101]
gi|214044372|gb|EEB85010.1| ribonuclease D [Roseobacter sp. GAI101]
Length = 204
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 22/168 (13%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
++ DCE + L H LC++QL+ D + I G+T LE + K+ H
Sbjct: 19 IVAIDCETMGLHPHRDRLCVVQLSGGDGHAHLVQIGKGQTEAPNLCALLEDPEVLKLFHF 78
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+ D A+ FG K V T+IA L+ R GL + C Q
Sbjct: 79 GRFDIAAMQNAFGAKTAPVYCTKIASRLVRTFTDRH----------GL---AKLC----Q 121
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217
E + +Q W LT+ + AA DV +L H + KLN
Sbjct: 122 ELLGTDISKQQQSSDWGAAQLTQAQIDYAASDVLYL----HQLRDKLN 165
>gi|356577300|ref|XP_003556765.1| PREDICTED: uncharacterized protein LOC100794813 [Glycine max]
Length = 75
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 21/25 (84%)
Query: 70 MQLAFPDAIYLVDAIQGGETVVKAC 94
MQLAF DA+YLVDAI+GGE + AC
Sbjct: 1 MQLAFSDAVYLVDAIEGGEELSIAC 25
>gi|429118642|ref|ZP_19179397.1| Ribonuclease D [Cronobacter sakazakii 680]
gi|426326896|emb|CCK10134.1| Ribonuclease D [Cronobacter sakazakii 680]
Length = 373
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 32/205 (15%)
Query: 45 SSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKAC--KPALESS 101
++ Q + D E V + L ++QL + + L+D + T+ + L+
Sbjct: 18 TARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPL----TITDWAPFQALLQDQ 73
Query: 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADP 161
+TK +H D E FG+ +DTQ+ SFVG P
Sbjct: 74 NVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQV-----------------LASFVG---HP 113
Query: 162 RYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
CG + + V+L + W RPLTE AA DV +L I H +M+++ +
Sbjct: 114 LSCGFATLVEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREA 173
Query: 220 SLWYLAVRGALYCRCFCINENDYVD 244
W A CR + +D
Sbjct: 174 G-WLTAAINE--CRLMTQRRGEVLD 195
>gi|258566335|ref|XP_002583912.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907613|gb|EEP82014.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 635
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 52 IGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
IG D E D +G +C+MQ++ D ++VD + ++ + I KV+H
Sbjct: 249 IGIDLEHHDTHSYYGLVCLMQISTRDKDWIVDTLLPWREELQILNEVFANPQIVKVLHGS 308
Query: 111 KRDSEALYFQFGIKLHNVVDT-QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
D L G+ L + DT A +L ++ K D +++F A+ +Y
Sbjct: 309 SMDVIWLQRDLGLYLVGLFDTYHAAAALHYPKKSLKFLLDKFVNFQ---AEKKYQIAD-- 363
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL M A D +L YIY ++ +L ++S
Sbjct: 364 ---------------WRVRPLLPGMFDYARSDTHYLLYIYDHLRNELIERS 399
>gi|170035413|ref|XP_001845564.1| exosome component 10 [Culex quinquefasciatus]
gi|167877380|gb|EDS40763.1| exosome component 10 [Culex quinquefasciatus]
Length = 796
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 70/186 (37%), Gaps = 31/186 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
+DL H G C+MQ++ Y++D + E + + + KV+H
Sbjct: 284 AIDLEHHSYRTFQGFTCLMQISTRTKDYIIDTLALREEL-HVLNEVFTDTKVVKVLHGSI 342
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL-LADPRYCGISYQE 170
D E L + + N+ DT A ++E S +GL YC I +
Sbjct: 343 SDIEWLQRDLALYVVNMFDTGEAAKVLE------------FSRIGLQFLLKHYCNIETDK 390
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAV---R 227
++ W RP+ + + A D +L YIY M +L ++ +L +
Sbjct: 391 AYQL--------ADWRIRPIPKNFIEYARKDTHYLLYIYDRMRNELIEKGASFLQTVYNK 442
Query: 228 GALYCR 233
C+
Sbjct: 443 STFLCK 448
>gi|426195548|gb|EKV45477.1| hypothetical protein AGABI2DRAFT_186278 [Agaricus bisporus var.
bisporus H97]
Length = 870
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 28/166 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G LC+MQ++ + ++VD I + + + I KV H +
Sbjct: 285 AVDLEHHSYRTYLGFLCLMQISTREEDFVVDVIALRDEM-EVLNEVFTDPKIVKVFHGAE 343
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIE-EQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D L F + + N+ DT A L+E + G + Y ++ D RY
Sbjct: 344 SDIVWLQQDFNLYVVNLFDTYHASKLLEFPRHGLANLLEMYCDYI---PDKRYQLAD--- 397
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL + M+ A D FL +IY N+ L
Sbjct: 398 --------------WRIRPLPKEMLEYARSDTHFLLFIYDNLRNAL 429
>gi|148978262|ref|ZP_01814780.1| ribonuclease D [Vibrionales bacterium SWAT-3]
gi|145962563|gb|EDK27840.1| ribonuclease D [Vibrionales bacterium SWAT-3]
Length = 372
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 21/176 (11%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
V+ D E V + L ++QL + + L+D I E + L+ + + KV+H
Sbjct: 24 VVMLDTEFVRTRTYYPQLGLIQLFDGETLSLIDPIALDE--MTPFVGLLKDASVLKVLHA 81
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
C D E F +VDTQI + + G S F L+++ + G+
Sbjct: 82 CGEDLEVFQNAFDCTPTPMVDTQIMAAFL----GHGLS----TGFAALVSE--FVGVDLD 131
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ E R D W RPL++ + AA DV +L +Y+ +++K+ + W A
Sbjct: 132 KSES-----RTD---WLARPLSQKQLDYAAADVHYLMPMYNKLLEKVMEAGWWEAA 179
>gi|393718410|ref|ZP_10338337.1| ribonuclease D [Sphingomonas echinoides ATCC 14820]
Length = 395
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 22/169 (13%)
Query: 54 FDCEGVDLCRHGS----LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
F C + R + LC++Q+A + +D + G + + + + + KV H
Sbjct: 25 FVCVDTEFMRENTFWPELCLIQIADVNEAAAIDPLAPGLDMTPLLQLLVNNEDVLKVFHA 84
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
+D E +Y G H + DTQ+A + + E + + L+ Y GI+
Sbjct: 85 GGQDLEIVYNLTGTTPHPLFDTQVAAMALGQGE--------QVGYSNLV--DAYLGITVD 134
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
+ W+ RPL + A DV L I+ M+++L +
Sbjct: 135 KGARF--------TDWSRRPLDARQIEYAIGDVTHLAKIFPKMLERLRR 175
>gi|355778692|gb|EHH63728.1| hypothetical protein EGM_16753 [Macaca fascicularis]
Length = 608
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LC 68
SS P + ++ +VT + + + +EP +L V+G DCE V+L S L
Sbjct: 63 SSAPRSSWEEQILKAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLS 122
Query: 69 IMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P I L I GG+T+ + L I KV C D+ L +G+
Sbjct: 123 LLQMASPSGLCVLIRLPKLICGGKTLPRTLLNILADGTILKVGVGCSEDASKLLQDYGLV 182
Query: 125 LHNVVD 130
+ +D
Sbjct: 183 VRGCLD 188
>gi|389640871|ref|XP_003718068.1| exosome complex exonuclease Rrp [Magnaporthe oryzae 70-15]
gi|351640621|gb|EHA48484.1| exosome complex exonuclease Rrp [Magnaporthe oryzae 70-15]
Length = 828
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 29/205 (14%)
Query: 21 PIDSVVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIY 79
PI P ++ T L E LE + + I D E D HG L +MQ++ + +
Sbjct: 225 PIAKSSPTYVDTYEGVL--EMLEDLKQAK-EIAVDLEHHDFRTYHGLLSLMQISTREKDW 281
Query: 80 LVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDT-QIAYSLI 138
+VD ++ ++ I KV H D L G+ + + DT A +L+
Sbjct: 282 IVDTLKPWRQQLEILNEVFADPSIVKVFHGAFMDIVWLQRDLGLYVVGLFDTFHAAEALM 341
Query: 139 EEQEGRKRSPDDYI--SFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVR 196
+ Y+ FV AD RY W RPL E M+
Sbjct: 342 YPSKSLA-----YLLKKFVDFEADKRYQTAD-----------------WRIRPLPEEMLY 379
Query: 197 AAADDVRFLPYIYHNMMKKLNQQSL 221
A D +L Y+Y M +L +QS+
Sbjct: 380 YARSDTHYLLYVYDMMRNELLRQSV 404
>gi|389795066|ref|ZP_10198204.1| ribonuclease D [Rhodanobacter fulvus Jip2]
gi|388431517|gb|EIL88588.1| ribonuclease D [Rhodanobacter fulvus Jip2]
Length = 371
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 23/175 (13%)
Query: 52 IGFDCEGVDLCR-HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+G D E + H L ++QL + LVD + + A +P L V+H
Sbjct: 31 VGVDTEFMRRNTFHPQLALLQLGWNGRHALVDPL--AFDIGDALQPRLGDGTAVTVMHSA 88
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D E L + DTQIA + + G +S+ L+A+ G+ +
Sbjct: 89 SEDLETLAPLLPDGPQQLFDTQIAAAFVGMGLG--------LSYRALVAE--LAGVDLDK 138
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ--QSLWY 223
E R D W RPLT+ AA DV +L I+ + ++L Q +S W+
Sbjct: 139 GET-----RSD---WLQRPLTDSQRAYAALDVVYLKTIHDQLSERLQQRDRSAWH 185
>gi|409436727|ref|ZP_11263897.1| Ribonuclease D [Rhizobium mesoamericanum STM3625]
gi|408751651|emb|CCM75051.1| Ribonuclease D [Rhizobium mesoamericanum STM3625]
Length = 381
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 25/156 (16%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALE---SSYITKVIHDCKRDSEALYFQFGI 123
LC++Q+A P LVD + G + KP E + + KV H ++D E +Y + G+
Sbjct: 37 LCLIQMASPTTEVLVDPLAKGLDL----KPFFELMANPAVLKVFHAARQDIEIIYNRGGL 92
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
H + DTQ+A + D +S+ L++ R G+ +
Sbjct: 93 IPHPIFDTQVAAMVC--------GFGDSVSYDQLVS--RTKGVQIDKSSRF--------T 134
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W+ RPL+E + A DV L +Y + +L ++
Sbjct: 135 DWSRRPLSEKQLDYALADVTHLRDVYLYLKAELARE 170
>gi|419839681|ref|ZP_14363087.1| ribonuclease D [Haemophilus haemolyticus HK386]
gi|386909259|gb|EIJ73935.1| ribonuclease D [Haemophilus haemolyticus HK386]
Length = 380
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 46 SERQLVIGFDCEGVDLCRHG-SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYIT 104
+++Q + D E + + + L ++QL + + L+D + T L + +
Sbjct: 27 AQQQSAVALDTEFMRVSTYFPKLGLIQLYDGERVSLIDPL--AITDFSPFVALLSNPKVL 84
Query: 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164
KV+H C D +F H+++DTQI F+GL
Sbjct: 85 KVLHSCSEDLLVFLQEFDQLPHSMIDTQIM-----------------ARFLGLGTSAGLA 127
Query: 165 GISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYL 224
+++Q V + W RPL+++ ++ AA DV +L +YH + K+L ++ W
Sbjct: 128 KLAHQYLN-VEIDKGATRTNWIKRPLSDIQLKYAAGDVWYLLPLYHILEKEL-AKTPWEQ 185
Query: 225 AVR 227
AVR
Sbjct: 186 AVR 188
>gi|53803525|ref|YP_114794.1| ribonuclease D [Methylococcus capsulatus str. Bath]
gi|53757286|gb|AAU91577.1| ribonuclease D [Methylococcus capsulatus str. Bath]
Length = 388
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 25/170 (14%)
Query: 52 IGFDCEGV-DLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + D + C++Q+A +D + + C L + ITKV H
Sbjct: 31 IAVDTEFMRDKTYYPKFCLLQIANGTQAACIDPLAIEDLREVEC--LLFNRAITKVFHAA 88
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIE--EQEGRKRSPDDYISFVGLLADPRYCGISY 168
++D E + +F + DTQ+A L+ EQ G Y S V + G++
Sbjct: 89 RQDLEIFFHRFRAVPAPIFDTQLAAPLVGHPEQVG-------YASLVSAM-----LGVTV 136
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218
+KE R W+ RPL+ AA+DV L +Y M ++L +
Sbjct: 137 -DKEHTRT-------DWSQRPLSAAQKEYAANDVIHLAALYPRMREQLER 178
>gi|346973710|gb|EGY17162.1| hypothetical protein VDAG_00844 [Verticillium dahliae VdLs.17]
Length = 804
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 63/167 (37%), Gaps = 29/167 (17%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G L +MQ++ D ++VD ++ ++ I KV H
Sbjct: 240 AVDLEHHDTRTYAGLLSLMQISTRDQDWIVDTLKPWRHQLEVLNEVFTDPKIVKVFHGAH 299
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYI--SFVGLLADPRYCGISYQ 169
D + L G+ ++ + DT A ++ G + Y+ FV AD +Y
Sbjct: 300 MDMQWLQRDLGLYINGLFDTFFAAEIL----GYPQRSLAYLLKRFVDFDADKKYQMAD-- 353
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL E M A D +L YI+ + +L
Sbjct: 354 ---------------WRIRPLPEEMFYYARSDTHYLLYIFDRIRNEL 385
>gi|210147550|ref|NP_957383.2| exosome component 10 [Danio rerio]
Length = 899
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 66/158 (41%), Gaps = 26/158 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ + +++D ++ + + I KV H
Sbjct: 309 AVDLEHHSYRSFLGITCLMQISTREEDFIIDTLEL-RSEMYILNETFTDPAIVKVFHGAD 367
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D E L FG+ + N+ DT A + R+ D++ V YC +S ++
Sbjct: 368 SDIEWLQKDFGLYVVNMFDTHHAARCL----NLGRNSLDHLLKV-------YCDVSSDKR 416
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
++ W RPL + M++ A D +L Y+Y
Sbjct: 417 YQLAD--------WRIRPLPDEMLKYAQADTHYLLYVY 446
>gi|189237006|ref|XP_966807.2| PREDICTED: similar to Rrp6 CG7292-PB [Tribolium castaneum]
Length = 947
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 62/152 (40%), Gaps = 20/152 (13%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G C++Q++ D YL+DA+ + + I K+ H +D E L +
Sbjct: 292 GITCLIQISTEDKDYLIDAL-ALRDKLSILNEVFTKNTIVKIFHGADKDIEWLQRDLSLY 350
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A ++ Y + ++C ++ ++ ++
Sbjct: 351 VVNMFDTHQAAKALQ-----------YPALSLAFLMKKFCNVTPNKQFQLAD-------- 391
Query: 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL + + A +D +L YIY M ++L
Sbjct: 392 WRIRPLPDELKSYAREDTHYLIYIYKMMKREL 423
>gi|402876535|ref|XP_003902017.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 1
[Papio anubis]
gi|402876537|ref|XP_003902018.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 2
[Papio anubis]
gi|402876539|ref|XP_003902019.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 3
[Papio anubis]
gi|402876543|ref|XP_003902021.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2 isoform 5
[Papio anubis]
Length = 620
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LC 68
SS P + ++ +VT + + + +EP +L V+G DCE V+L S L
Sbjct: 63 SSAPRSSWEEQILKAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLS 122
Query: 69 IMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P I L I GG+T+ + L I KV C D+ L +G+
Sbjct: 123 LLQMASPSGLCVLIRLPKLICGGKTLPRTLLNILADGTILKVGVGCSEDASKLLQDYGLV 182
Query: 125 LHNVVD 130
+ +D
Sbjct: 183 VRGCLD 188
>gi|345299669|ref|YP_004829027.1| ribonuclease D [Enterobacter asburiae LF7a]
gi|345093606|gb|AEN65242.1| ribonuclease D [Enterobacter asburiae LF7a]
Length = 384
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 107/293 (36%), Gaps = 63/293 (21%)
Query: 51 VIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHD 109
I D E V + L ++Q+ + L+D + G T + L + +TK +H
Sbjct: 33 AIALDTEFVRTRTYYPQLGLIQMYDGKHVSLIDPL--GITDWSPMRELLLDTDVTKYLHA 90
Query: 110 CKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ 169
D E FGI ++DTQI + P + F ++ + Y GI+
Sbjct: 91 GSEDLEVFLNTFGIMPQPLIDTQILAAF-------SNRPLSW-GFAAMVEE--YTGIALD 140
Query: 170 EKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK--------------- 214
+ E R D W RPLTE + AA DV +L I +MK
Sbjct: 141 KSES-----RTD---WLARPLTERQLEYAAADVFYLLPIAGQLMKEAEASGWLPAALDEC 192
Query: 215 KLNQQ----------------SLWYLAVRGALYCRCFCINENDYVDWPPLPPVPDYLIVE 258
++ QQ + W L R L C DW L V
Sbjct: 193 RMTQQRRQEVVDPKEAWRDISNAWQLRTR-QLACLQLL------ADWRLRKARERDLAVN 245
Query: 259 GDVPEEEILSILDVPPGKMGRI--IGRRGSSILAIKESCNAEILIGGAKGPPD 309
V EE + ++ PG MG + IG GS I ++ A L+ A+ PD
Sbjct: 246 FVVREEHLWAVARYMPGSMGELDSIGLSGSEIRFHGKTLLA--LVEKAQQTPD 296
>gi|444920067|ref|ZP_21239911.1| Ribonuclease D [Wohlfahrtiimonas chitiniclastica SH04]
gi|444508934|gb|ELV09102.1| Ribonuclease D [Wohlfahrtiimonas chitiniclastica SH04]
Length = 285
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 41/169 (24%)
Query: 52 IGFDCEGVDLCRHGS-LCIMQLAFPDAIYLVDAIQGGETVVKACKPALE---SSYITKVI 107
I D E + + S LC++Q+A D +D + + KP L+ + I KV
Sbjct: 27 IAVDTEFMRFRTYFSKLCLIQMATLDEAICIDPL-----AITDFKPLLDLFVNPNIVKVF 81
Query: 108 HDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGIS 167
H +D EA+Y F + + DTQIA +++ D++ +S
Sbjct: 82 HSAGQDLEAIYNTFALIPAPIFDTQIAETVLGA---------DHL-------------LS 119
Query: 168 YQEKEEVR--VLL-----RQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
YQ+ E+R VLL R D W RPL++ + A DDV +L +Y
Sbjct: 120 YQDTIEMRLNVLLEKAETRTD---WEKRPLSKSQIEYAYDDVTYLYDVY 165
>gi|427709438|ref|YP_007051815.1| 3'-5' exonuclease [Nostoc sp. PCC 7107]
gi|427361943|gb|AFY44665.1| 3'-5' exonuclease [Nostoc sp. PCC 7107]
Length = 209
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QL I G+T K LE+ + K+ H
Sbjct: 27 IAVDTETMGLLPQRDRLCLVQLCNSQGKVTAIRIARGQTQSPNLKNLLEAKNVLKIFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L GI + V T+IA L R + QE
Sbjct: 87 RFDVATLRHNLGIYVQPVFCTKIASKLARTYTNRHGLKE-----------------VVQE 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E+V + W LTE + AA+DVR+L + + + + L ++ W +A
Sbjct: 130 LEQVELDKSAQSSDWGNAANLTEAQLSYAANDVRYLINVQYKLREMLKREERWEIA 185
>gi|429082709|ref|ZP_19145770.1| Ribonuclease D [Cronobacter condimenti 1330]
gi|426548590|emb|CCJ71811.1| Ribonuclease D [Cronobacter condimenti 1330]
Length = 402
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 32/205 (15%)
Query: 45 SSERQLVIGFDCEGVDL-CRHGSLCIMQLAFPDAIYLVDAIQGGETVVKAC--KPALESS 101
++ Q + D E V + L ++QL + + L+D + T+ + L+
Sbjct: 47 TARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPL----TITDWAPFQALLQDQ 102
Query: 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADP 161
+TK +H D E FG+ +DTQ+ SFVG P
Sbjct: 103 NVTKYLHAGSEDLEVFQNAFGMMPDPFIDTQV-----------------LASFVG---HP 142
Query: 162 RYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
CG + + V+L + W RPLTE AA DV +L I H +M+++ +
Sbjct: 143 LSCGFATLVEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREA 202
Query: 220 SLWYLAVRGALYCRCFCINENDYVD 244
A+ CR + +D
Sbjct: 203 GWLTAAIN---ECRLMTQRRREVLD 224
>gi|157825886|ref|YP_001493606.1| ribonuclease D [Rickettsia akari str. Hartford]
gi|157799844|gb|ABV75098.1| Ribonuclease D [Rickettsia akari str. Hartford]
Length = 281
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 22/150 (14%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
+ L I+Q+ + ++DA+ + + LE + ITK+ H + D E Y F
Sbjct: 36 YAQLSIIQVKAEEYCGIIDALSNLD--LNVFNKLLEDNNITKIFHAPREDLEIFYNLFKT 93
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDY-ISFVGLLADPRYCGISYQEKEEVRVLLRQDP 182
NV D QIA ++ G++ S DD +G+ D ++Q+
Sbjct: 94 LPANVFDIQIAANIC--GFGKQLSYDDICYKLIGITIDK-----THQKSN---------- 136
Query: 183 QFWTYRPLTELMVRAAADDVRFLPYIYHNM 212
W RP+T M+ A DV++L IY +
Sbjct: 137 --WLKRPITSDMLNYAMLDVKYLYKIYQEL 164
>gi|330802281|ref|XP_003289147.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
gi|325080770|gb|EGC34311.1| hypothetical protein DICPUDRAFT_153473 [Dictyostelium purpureum]
Length = 1045
Score = 41.2 bits (95), Expect = 0.70, Method: Composition-based stats.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 20/153 (13%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G +C+MQ++ +++D + + + + I KV+H D + L FGI
Sbjct: 286 QGFVCLMQISTRGEDFIIDTL-ALRSHIHMLNNVTTNPAIVKVLHGSDSDIKWLQRDFGI 344
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A ++E P ++F LL +C + +K ++
Sbjct: 345 YIVNMFDTGQASRVLE-------YPSASLAF--LLK--YFCAVDANKKYQL--------A 385
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W R + E M++ A +D +L YIY + +L
Sbjct: 386 DWRIRKIPEEMIKYAREDTHYLLYIYDRLRNEL 418
>gi|163752438|ref|ZP_02159629.1| ribonuclease D [Shewanella benthica KT99]
gi|161327662|gb|EDP98855.1| ribonuclease D [Shewanella benthica KT99]
Length = 380
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR 162
IT V+H C D E + N+ D+QIA +L G + + L+ +
Sbjct: 84 ITTVLHSCSEDLEVFARNGHCQPANLFDSQIAAALCGLGHG--------LGYAKLV--EQ 133
Query: 163 YCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
IS + E R D W RPL+E + AA+DV +L +Y +++KL QQ
Sbjct: 134 TLDISLDKGES-----RTD---WMKRPLSEAQLNYAANDVYYLYNLYPQLLEKLQQQ 182
>gi|146329754|ref|YP_001210006.1| ribonuclease D [Dichelobacter nodosus VCS1703A]
gi|146233224|gb|ABQ14202.1| ribonuclease D [Dichelobacter nodosus VCS1703A]
Length = 355
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
VIH +D E ++ + + DTQI +SLI SP IS++G + Y G
Sbjct: 76 VIHAASQDLELMHLHGQLLPNMFRDTQIGFSLI--------SPHKAISYLGFVQ--HYLG 125
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM---MKKLNQQSLW 222
I + E R D W RPLT + AA+DV L Y + +++LN+ W
Sbjct: 126 IDLDKSET-----RSD---WLARPLTNEQCQYAANDVGLLLQAYPLLCADLQRLNRMHWW 177
>gi|270007326|gb|EFA03774.1| hypothetical protein TcasGA2_TC013885 [Tribolium castaneum]
Length = 890
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 28/156 (17%)
Query: 65 GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
G C++Q++ D YL+DA+ + + I K+ H +D E L +
Sbjct: 292 GITCLIQISTEDKDYLIDAL-ALRDKLSILNEVFTKNTIVKIFHGADKDIEWLQRDLSLY 350
Query: 125 LHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184
+ N+ DT A ++ Y + ++C ++ + QF
Sbjct: 351 VVNMFDTHQAAKALQ-----------YPALSLAFLMKKFCNVT------------PNKQF 387
Query: 185 ----WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
W RPL + + A +D +L YIY M ++L
Sbjct: 388 QLADWRIRPLPDELKSYAREDTHYLIYIYKMMKREL 423
>gi|414075514|ref|YP_006994832.1| 3'-5' exonuclease [Anabaena sp. 90]
gi|413968930|gb|AFW93019.1| 3'-5' exonuclease [Anabaena sp. 90]
Length = 209
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L + LC++QL P+ I G+TV + +E+++I KV H
Sbjct: 27 IAVDTETMGLLPQRDRLCLIQLCNPEGQVTAIRISRGQTVAPNLQILMEATHIVKVFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L I + + T+IA L R D + E
Sbjct: 87 RFDVATLRQNLDIVVQPIFCTKIASKLARTYTNRHGLKDVVL-----------------E 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E+V + W L++ + AA+DVR+L + + L ++ W +A
Sbjct: 130 LEKVELDKSSQCSDWGNASNLSDAQLSYAANDVRYLLSVREKLTAMLQREERWQVA 185
>gi|313213333|emb|CBY37160.1| unnamed protein product [Oikopleura dioica]
Length = 689
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 36/180 (20%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C++Q++ Y++D + E + K + I K+ H +
Sbjct: 279 AVDLEHHRYRSYQGFTCLVQISSRQKDYILDPLAVWEDMYK-LNEVFANPKIVKIFHGSR 337
Query: 112 RDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
D L FG+ + N+ DT A ++ K+S D + YC I
Sbjct: 338 NDMLWLQRDFGVYVVNLFDTFFAAKKLD---LAKKSLDYLLQ--------HYCKI----- 381
Query: 172 EEVRVLLRQDPQF----WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVR 227
R D +F W RP+ M+R A D +L Y+Y + L + L + A R
Sbjct: 382 -------RLDKRFQLADWRMRPIPPNMLRYARQDTHYLLYVYDRLRADL--EKLEFGATR 432
>gi|429091417|ref|ZP_19154089.1| Ribonuclease D [Cronobacter dublinensis 1210]
gi|426744029|emb|CCJ80202.1| Ribonuclease D [Cronobacter dublinensis 1210]
Length = 369
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 56/149 (37%), Gaps = 25/149 (16%)
Query: 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGL 157
L+ +TK +H D E FG+ +DTQ+ SFVG
Sbjct: 66 LQDQNVTKFLHAGSEDLEVFQNAFGMMPDPFIDTQVV-----------------ASFVG- 107
Query: 158 LADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215
P CG + + V+L + W RPLTE AA DV +L I H +M++
Sbjct: 108 --HPLSCGFATLVEHHTGVVLDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQ 165
Query: 216 LNQQSLWYLAVRGALYCRCFCINENDYVD 244
+ W A CR + +D
Sbjct: 166 VRDAG-WLTAALNE--CRLMTQRRGEVLD 191
>gi|390442262|ref|ZP_10230274.1| putative 3'-5' exonuclease family protein [Microcystis sp. T1-4]
gi|389834441|emb|CCI34400.1| putative 3'-5' exonuclease family protein [Microcystis sp. T1-4]
Length = 209
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 61/160 (38%), Gaps = 18/160 (11%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH 126
LC++QL P I G+T K +E I KV H + D L+ F I
Sbjct: 43 LCLIQLCDPSGFVTAIRIFRGQTEAPNLKKVMEDERIEKVFHFARFDVAQLFHTFAIATQ 102
Query: 127 NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW- 185
+ T+IA L Y S GL + QE E + + W
Sbjct: 103 PIFCTKIASKLART----------YTSSHGLKS-------LVQELEGIELDKTAQSSDWG 145
Query: 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
LT + AA+DVR+L + ++ L ++ W LA
Sbjct: 146 NAANLTPQQLSYAANDVRYLLSVRDKLIVMLQREERWELA 185
>gi|334120055|ref|ZP_08494138.1| 3'-5' exonuclease [Microcoleus vaginatus FGP-2]
gi|333457237|gb|EGK85862.1| 3'-5' exonuclease [Microcoleus vaginatus FGP-2]
Length = 210
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 67/176 (38%), Gaps = 19/176 (10%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
I D E + L LC++QL P+ V I G+T +ES I KV H
Sbjct: 27 IAVDTETMGLLPWRDRLCLVQLCDPEGKVAVVRIAKGQTAAPNLNKLMESENIEKVFHFA 86
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D + + I + V T+IA S + K D I QE
Sbjct: 87 RFDMATMRYNLSIDIAPVFCTKIA-SKLARTYTNKHGLKDLI----------------QE 129
Query: 171 KEEVRVLLRQDPQFW-TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
E+V + W L++ + AA+DVR+L + L ++ W +A
Sbjct: 130 VEKVELNKTSQSSDWGNSEHLSDEQLSYAANDVRYLLSAKQTLTAMLQREERWEIA 185
>gi|320163487|gb|EFW40386.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 467
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHG-SLCIMQLAFPDAIYLVDAIQ 85
PIH ++ +++ A FL P IG D E + R+ LC++QL+ + +VDA+
Sbjct: 138 PIHYISTDAEVEA-FL-PILAAAETIGLDTEFLSFPRYTPQLCVLQLSTETDLGIVDALS 195
Query: 86 -GGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSL 137
E + K C E I +H C D LY G V DTQIA +
Sbjct: 196 ISPEMLKKLCLRICEKPVI---VHSCSSDCAILYDIAGTLPAKVFDTQIAAAF 245
>gi|340380967|ref|XP_003388993.1| PREDICTED: exosome component 10-like [Amphimedon queenslandica]
Length = 724
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 20/157 (12%)
Query: 64 HGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGI 123
G +C+MQ++ Y++D + + + I KV+H D L FG+
Sbjct: 266 QGFVCLMQVSTRTTDYIIDTL-SLRPHLHLLNEVFTNPNIIKVMHGADWDIPWLQRDFGV 324
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
+ N+ DT A + G R S LL+ CG++ ++ ++
Sbjct: 325 YIVNLFDTGQACRTL----GLPR-----YSLAFLLS--YCCGVTANKQYQL--------A 365
Query: 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220
W RPL E M++ A +D +L Y+Y + +L ++S
Sbjct: 366 DWRIRPLPEDMIKYAREDTHYLLYVYDRLRNELIRRS 402
>gi|301060312|ref|ZP_07201175.1| putative ribonuclease D [delta proteobacterium NaphS2]
gi|300445508|gb|EFK09410.1| putative ribonuclease D [delta proteobacterium NaphS2]
Length = 381
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 26/173 (15%)
Query: 47 ERQLVIGFDCEGVDLCRHG-SLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
+++ I D E + + +C++Q + P LVD + + + P +S I K
Sbjct: 25 QKETAIAVDLEADSMFHYQEKVCLLQFSTPSKNILVDPLAVKD--LSPLAPIFKSFGICK 82
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
+ H D +LY F I+++ + DTQIA F+GL G
Sbjct: 83 IFHGADYDIRSLYRDFKIEVNALFDTQIA-----------------ARFLGLTD----IG 121
Query: 166 ISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
++ + ++ + L++ Q W+ RPL M++ A D L + N+ ++L
Sbjct: 122 LASLLQGKLNITLKKKYQKKDWSQRPLPAPMLQYAVHDTCHLIPLAQNLREEL 174
>gi|351708674|gb|EHB11593.1| Exonuclease 3'-5' domain-containing protein 2 [Heterocephalus
glaber]
Length = 612
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 2 ASSPSHQTHIPLSSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCE 57
A SP + +P S P + ++ +VT + + + ++P +L V+G DCE
Sbjct: 44 AQSPPEEDQLP-SGVPRPSWEERILQAKVVTVSREAEWDQIQPLLWSELEDFPVLGIDCE 102
Query: 58 GVDLCRHGS-LCIMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKR 112
V+L S L ++Q+A P + L I GG+T+ K L I KV C
Sbjct: 103 WVNLEGKASPLSLLQMASPSGLCVLVRLPKLIYGGKTLPKTLLDILADGTILKVGVGCSE 162
Query: 113 DSEALYFQFGIKLHNVVD 130
D+ L +G+ + +D
Sbjct: 163 DASKLLQDYGLMVRGCLD 180
>gi|183220183|ref|YP_001838179.1| ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189910303|ref|YP_001961858.1| ribonuclease D-like [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167774979|gb|ABZ93280.1| Ribonuclease D-related [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167778605|gb|ABZ96903.1| Ribonuclease D [Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
Length = 212
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 52 IGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC 110
+ DCE + L R LC++Q++ + I G+ + ES ITK+ H
Sbjct: 31 LAVDCEMMGLNPRRDRLCVVQISDSKNKVALVQILPGQKEAPHIQKLFESKEITKIFHFA 90
Query: 111 KRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
+ D L + GIK+ NV T+IA L R+ D L+ +E
Sbjct: 91 RMDMTFLRARLGIKVQNVFCTKIASKLA-------RTYTDKHGLKELI----------RE 133
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFL 205
E + + W + LT+ V A+ DVRFL
Sbjct: 134 FFEENIDKKNQSSDWGKKILTKDQVDYASTDVRFL 168
>gi|78485923|ref|YP_391848.1| 3'-5' exonuclease [Thiomicrospira crunogena XCL-2]
gi|78364209|gb|ABB42174.1| ribonuclease D [Thiomicrospira crunogena XCL-2]
Length = 385
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 22/119 (18%)
Query: 103 ITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPR 162
+ KV H ++D E LY G ++ DTQIA ++ G LA
Sbjct: 76 VRKVFHSARQDIEVLYQVSGQMPISIYDTQIACLFLQH---------------GDLA--- 117
Query: 163 YCGISYQEKEEVRVLLRQDPQ--FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
G++ K E+ L +D W RPLT+ + A +DVR+L +Y + +L +Q
Sbjct: 118 --GLARVVKAELNFTLEKDQTRTNWQQRPLTDKQLEYAINDVRYLAPLYEKLQAELTEQ 174
>gi|386395739|ref|ZP_10080517.1| ribonuclease D [Bradyrhizobium sp. WSM1253]
gi|385736365|gb|EIG56561.1| ribonuclease D [Bradyrhizobium sp. WSM1253]
Length = 383
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 49/168 (29%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALE---SSYITKVIHDCKRDSEALYFQFGI 123
LC++Q+A + ++D + G + KP E + + KV H ++D E ++ Q GI
Sbjct: 39 LCVVQMASAEEAIVIDTLAAGIDL----KPFFELMANEAVLKVFHAARQDIEIIWHQAGI 94
Query: 124 KLHNVVDTQIAY------------SLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK 171
H V DTQ+A +L+E+ G + PD F
Sbjct: 95 IPHPVFDTQVAAMVLGYGDSIAYDALVEKVTGHR--PDKTHRFTD--------------- 137
Query: 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
W+ RPLT+ + A DV L ++ + L ++
Sbjct: 138 -------------WSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKR 172
>gi|354472198|ref|XP_003498327.1| PREDICTED: exonuclease 3'-5' domain-containing protein 2-like
[Cricetulus griseus]
Length = 620
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 23 DSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LCIMQLAFPDA 77
+ ++ +VT + + ++P R+L V+G DCE V+L S L ++Q+A P
Sbjct: 71 ERILQAEVVTVSQEAEWNQIQPFFRRELEDFPVLGIDCEWVNLEGKASPLSLLQMASPSG 130
Query: 78 ----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVD 130
I L I GG+T+ + L I KV C D+ L +G+ + +D
Sbjct: 131 FCSLIRLPRLIYGGKTLPRTLLDILADGTILKVGVGCSEDANKLLQDYGLIVRGCLD 187
>gi|33866568|ref|NP_898127.1| ribonuclease D [Synechococcus sp. WH 8102]
gi|33633346|emb|CAE08551.1| putative ribonuclease D [Synechococcus sp. WH 8102]
Length = 214
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 19/182 (10%)
Query: 48 RQLVIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
R + D E + L HG LC++Q+A D I G+T + LE++ + K
Sbjct: 28 RMSALAVDTEAMGLI-HGRDRLCLVQIADADDRVCCIRIGLGQTSAPNLQRLLEAASVEK 86
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H + D AL GI + + T++ L R D + VG+ D
Sbjct: 87 VFHFARFDVAALASGLGIAVSPIFCTKVGSRLGRTYTPRHGLKDLVMELVGVELDKGAQS 146
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ +E L+++ + AA+DVR+L + L ++ W LA
Sbjct: 147 SDWGRVDE----------------LSDVQLAYAANDVRYLLPARQKLEAMLRREGRWDLA 190
Query: 226 VR 227
R
Sbjct: 191 QR 192
>gi|399043184|ref|ZP_10737609.1| ribonuclease D [Rhizobium sp. CF122]
gi|398058431|gb|EJL50329.1| ribonuclease D [Rhizobium sp. CF122]
Length = 381
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 29/158 (18%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALE---SSYITKVIHDCKRDSEALYFQFGI 123
LC++Q+A P LVD + G + KP E + + KV H ++D E +Y + G+
Sbjct: 37 LCLIQMASPTTEVLVDPLAKGLDL----KPFFELMANPAVLKVFHAARQDIEIIYNRGGL 92
Query: 124 KLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183
H + DTQ+A + D +S+ L+ R G+ + + +
Sbjct: 93 IPHPIFDTQVAAMVC--------GFGDSVSYDQLVN--RTKGVQ----------IDKSSR 132
Query: 184 F--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219
F W+ RPL+E + A DV L +Y + +L ++
Sbjct: 133 FTDWSRRPLSEKQLDYALADVTHLRDVYLYLKAELERE 170
>gi|384247138|gb|EIE20625.1| hypothetical protein COCSUDRAFT_18228, partial [Coccomyxa
subellipsoidea C-169]
Length = 344
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 62/159 (38%), Gaps = 27/159 (16%)
Query: 58 GVDLCRH------GSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCK 111
VDL H G C+MQ++ A YLVD I + P + I KV+H
Sbjct: 88 AVDLEAHSFRSFQGFCCLMQVSTRTADYLVDVIALRSHIGPHLAPMFADTKIVKVLHGSD 147
Query: 112 RDSEALYFQFGIKLHNVVDT-QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQE 170
D L FGI + ++ DT Q A L G LL+ +C + +
Sbjct: 148 SDIVWLQRDFGIYVASLFDTGQAARVLAYPSAG----------LAYLLS--HFCSVKADK 195
Query: 171 KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209
+ ++ W RPL+ + A D +L YIY
Sbjct: 196 RWQL--------ADWRVRPLSAEALHYARLDTHYLLYIY 226
>gi|220924978|ref|YP_002500280.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
gi|219949585|gb|ACL59977.1| ribonuclease D [Methylobacterium nodulans ORS 2060]
Length = 389
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 65/161 (40%), Gaps = 40/161 (24%)
Query: 67 LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESS---------YITKVIHDCKRDSEAL 117
LC++Q+A PD G +V PA++ + + KV H ++D E +
Sbjct: 39 LCLIQIAAPD---------GSTALVDPLAPAIDLTPFFALMGDERVLKVFHSARQDLEII 89
Query: 118 YFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVL 177
+ Q G+ DTQ+A + D +S+ L+ D I
Sbjct: 90 WLQGGLLPQPFFDTQVAAMVC--------GYGDSVSYEQLVNDVAKAKID---------- 131
Query: 178 LRQDPQF--WTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
+ +F W+ RPL+E + A DV L +Y + ++L
Sbjct: 132 --KSSRFTDWSRRPLSEAQLSYALSDVTHLIKVYEALARQL 170
>gi|301129155|ref|NP_001180289.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo
sapiens]
gi|301129157|ref|NP_001180290.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo
sapiens]
gi|301129159|ref|NP_001180291.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo
sapiens]
gi|301129161|ref|NP_001180292.1| exonuclease 3'-5' domain-containing protein 2 isoform 1 [Homo
sapiens]
gi|410516875|sp|Q9NVH0.2|EXD2_HUMAN RecName: Full=Exonuclease 3'-5' domain-containing protein 2;
AltName: Full=Exonuclease 3'-5' domain-like-containing
protein 2
gi|119601391|gb|EAW80985.1| exonuclease 3'-5' domain-like 2, isoform CRA_b [Homo sapiens]
Length = 621
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LC 68
SS P + ++ +VT + + + +EP +L V+G DCE V+L S L
Sbjct: 63 SSAPRSSWKERILKAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLS 122
Query: 69 IMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P + L I GG+T+ + L I KV C D+ L +G+
Sbjct: 123 LLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLV 182
Query: 125 LHNVVD 130
+ +D
Sbjct: 183 VRGCLD 188
>gi|254463169|ref|ZP_05076585.1| 3'-5' exonuclease [Rhodobacterales bacterium HTCC2083]
gi|206679758|gb|EDZ44245.1| 3'-5' exonuclease [Rhodobacteraceae bacterium HTCC2083]
Length = 203
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 20/168 (11%)
Query: 51 VIGFDCEGVDLCRH-GSLCIMQLAFPDA-IYLVDAIQGGETVVKACKPALESSYITKVIH 108
V+ DCE + L H LC++Q++ D +LV +G CK L + K+ H
Sbjct: 19 VVAIDCETMGLHPHRDRLCVIQMSGGDGNAHLVQVAKGQTEAPNLCK-MLTDPNVLKLFH 77
Query: 109 DCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISY 168
+ D A+ FG V T+IA LI R+ D LL
Sbjct: 78 FGRFDIAAMQNAFGAVTAPVYCTKIASKLI-------RTYTDRHGLKNLL---------- 120
Query: 169 QEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216
QE + + +Q W LT + AA DV +L + + K+L
Sbjct: 121 QELLNIDISKQQQSSDWGSAKLTNAQLEYAASDVLYLHRLRTELNKRL 168
>gi|85708161|ref|ZP_01039227.1| ribonuclease D [Erythrobacter sp. NAP1]
gi|85689695|gb|EAQ29698.1| ribonuclease D [Erythrobacter sp. NAP1]
Length = 400
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 30/197 (15%)
Query: 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLCRHGS----LCIMQLAFPDAIYLV 81
+ IH + S A+ E S+ + V D E R + LC++Q+A + +
Sbjct: 1 MKIHDLITTSDALADLCERLSQSEFV-AVDTE---FMRENTYWPELCLVQIANTEEAAAI 56
Query: 82 DAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQ 141
D + G + + E+ + KV H +D E + G + DTQI+ I +
Sbjct: 57 DPLADGIDLSPLLELLTENDEVLKVFHAGGQDVEIIVNMTGKTPFPIFDTQISMMAISQS 116
Query: 142 EGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF--WTYRPLTELMVRAAA 199
E I + L+ + + + + +F W+ RPLT+ + A
Sbjct: 117 E--------QIGYANLV------------DHWLNITVDKGARFTDWSRRPLTDRQIEYAI 156
Query: 200 DDVRFLPYIYHNMMKKL 216
DV L I+ ++KKL
Sbjct: 157 GDVTHLSKIFPKILKKL 173
>gi|88807852|ref|ZP_01123363.1| putative ribonuclease D [Synechococcus sp. WH 7805]
gi|88787891|gb|EAR19047.1| putative ribonuclease D [Synechococcus sp. WH 7805]
Length = 214
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 19/180 (10%)
Query: 48 RQLVIGFDCEGVDLCRHGS--LCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105
R + D E + L HG LC++Q+ I G+T K +E++ I K
Sbjct: 28 RSTALAVDTEAMGLI-HGRDRLCLVQICDDKDQVACIRIALGQTEAPRLKALMEATTIEK 86
Query: 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165
V H + D AL GI+++ + T++ L R D + VG+ D +
Sbjct: 87 VFHFARFDVAALATGLGIRVNPLFCTKVGSRLARTYTPRHGLKDLVMELVGVELDKQAQS 146
Query: 166 ISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225
+ +E LT++ + AA+D R+L + L ++ W LA
Sbjct: 147 SDWGRVDE----------------LTDVQLAYAANDARYLLAARRQLEVMLRREGRWELA 190
>gi|194380670|dbj|BAG58488.1| unnamed protein product [Homo sapiens]
Length = 621
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LC 68
SS P + ++ +VT + + + +EP +L V+G DCE V+L S L
Sbjct: 63 SSAPRSSWKERILKAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLS 122
Query: 69 IMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P + L I GG+T+ + L I KV C D+ L +G+
Sbjct: 123 LLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLV 182
Query: 125 LHNVVD 130
+ +D
Sbjct: 183 VRGCLD 188
>gi|157823431|ref|NP_001102185.1| exonuclease 3'-5' domain-containing protein 2 [Rattus norvegicus]
gi|149025011|gb|EDL81378.1| exonuclease 3''-5'' domain-like 2 (predicted) [Rattus norvegicus]
gi|183986019|gb|AAI66432.1| Exdl2 protein [Rattus norvegicus]
Length = 648
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 9/117 (7%)
Query: 23 DSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LCIMQLAFPDA 77
+ ++ +VT + + ++P +R+L V+G DCE V+L S L ++Q+A P
Sbjct: 99 ERILQAEVVTVSQEAEWNQIQPFLKRELEDFPVLGIDCEWVNLEGKASPLSLLQMASPSG 158
Query: 78 ----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVD 130
+ L I GG+T+ + L I KV C D+ L +G+ + +D
Sbjct: 159 FCALVRLPRLIYGGKTLPRTLLDILADGTILKVGVGCSEDANKLLQDYGLIVRGCLD 215
>gi|190689663|gb|ACE86606.1| exonuclease 3'-5' domain-like 2 protein [synthetic construct]
gi|190691025|gb|ACE87287.1| exonuclease 3'-5' domain-like 2 protein [synthetic construct]
Length = 621
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 14 SSDPDGKPIDSVVPIHIVTNASQLPAEFLEPSSERQL----VIGFDCEGVDLCRHGS-LC 68
SS P + ++ +VT + + + +EP +L V+G DCE V+L S L
Sbjct: 63 SSAPRSSWKERILKAKVVTVSQEAEWDQIEPLLRSELEDFPVLGIDCEWVNLEGKASPLS 122
Query: 69 IMQLAFPDA----IYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIK 124
++Q+A P + L I GG+T+ + L I KV C D+ L +G+
Sbjct: 123 LLQMASPSGLCVLVRLPKLICGGKTLPRTLLDILADGTILKVGVGCSEDASKLLQDYGLV 182
Query: 125 LHNVVD 130
+ +D
Sbjct: 183 VRGCLD 188
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,282,681,674
Number of Sequences: 23463169
Number of extensions: 221090076
Number of successful extensions: 499494
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 1045
Number of HSP's that attempted gapping in prelim test: 498048
Number of HSP's gapped (non-prelim): 1477
length of query: 319
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 177
effective length of database: 9,027,425,369
effective search space: 1597854290313
effective search space used: 1597854290313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)