Query 020975
Match_columns 319
No_of_seqs 225 out of 1424
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020975.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020975hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3saf_A Exosome component 10; e 100.0 6.4E-33 2.2E-37 266.8 15.8 250 25-296 107-399 (428)
2 1yt3_A Ribonuclease D, RNAse D 100.0 3.3E-32 1.1E-36 259.3 15.1 256 27-304 2-291 (375)
3 2hbj_A Exosome complex exonucl 100.0 2.4E-30 8.2E-35 248.7 17.0 250 26-297 85-384 (410)
4 2e6m_A Werner syndrome ATP-dep 99.9 3.2E-27 1.1E-31 207.1 14.2 184 26-228 15-207 (208)
5 2kfn_A Klenow fragment of DNA 99.9 1.7E-27 5.8E-32 239.6 10.2 233 27-275 6-258 (605)
6 3pv8_A DNA polymerase I; DNA p 99.9 2E-27 6.8E-32 237.2 9.0 209 50-275 30-245 (592)
7 1vk0_A Hypothetical protein; h 99.9 1.5E-24 5.3E-29 189.5 16.1 167 29-214 22-205 (206)
8 3cym_A Uncharacterized protein 99.9 1.9E-25 6.6E-30 216.3 11.1 246 29-298 19-325 (440)
9 1x9m_A DNA polymerase; DNA plo 99.8 6.7E-22 2.3E-26 201.7 5.6 206 51-269 1-254 (698)
10 4dfk_A DNA polymerase I, therm 99.8 5.6E-22 1.9E-26 195.9 -2.4 174 49-272 10-188 (540)
11 1bgx_T TAQ DNA polymerase; DNA 99.6 1.1E-16 3.9E-21 165.2 1.9 171 50-272 305-480 (832)
12 3v9w_A Ribonuclease T; DEDD nu 98.7 1.6E-07 5.5E-12 82.9 11.8 155 33-224 23-229 (235)
13 2p1j_A POLIII, DNA polymerase 97.5 0.00097 3.3E-08 56.3 11.3 137 47-220 10-180 (186)
14 1wlj_A Interferon stimulated g 97.4 0.0015 5E-08 55.3 11.9 140 49-219 5-172 (189)
15 2f96_A Ribonuclease T; RNAse, 97.4 0.0029 1E-07 54.9 13.1 86 102-222 126-219 (224)
16 3mxm_B Three prime repair exon 97.1 0.0019 6.6E-08 57.0 9.4 100 90-217 104-216 (242)
17 1y97_A Three prime repair exon 96.9 0.0071 2.4E-07 52.8 11.2 102 90-217 99-211 (238)
18 3u3y_B Three prime repair exon 96.7 0.0068 2.3E-07 55.5 9.7 102 90-217 104-216 (314)
19 2gui_A DNA polymerase III epsi 96.4 0.063 2.2E-06 45.1 13.2 92 90-216 85-185 (194)
20 2qxf_A Exodeoxyribonuclease I; 95.5 0.17 5.9E-06 48.9 13.1 141 48-215 8-200 (482)
21 1zbh_A 3'-5' exonuclease ERI1; 92.4 2.3 7.8E-05 38.2 13.2 96 90-217 156-264 (299)
22 1qht_A Protein (DNA polymerase 91.7 3.7 0.00013 42.0 15.3 147 49-213 135-327 (775)
23 2xri_A ERI1 exoribonuclease 3; 86.4 5.6 0.00019 33.8 10.4 90 90-214 107-212 (224)
24 1w0h_A 3'-5' exonuclease ERI1; 86.3 2.6 9E-05 35.1 8.1 95 90-216 88-195 (204)
25 3cg7_A CRN-4, cell death-relat 85.9 4 0.00014 36.8 9.6 97 90-215 98-208 (308)
26 2igi_A Oligoribonuclease; RNAs 79.8 7 0.00024 31.7 8.0 30 90-119 84-117 (180)
27 3tr8_A Oligoribonuclease; tran 79.1 7 0.00024 32.5 7.8 51 90-140 88-149 (186)
28 2rhf_A DNA helicase RECQ; HRDC 74.5 0.097 3.3E-06 37.4 -4.4 52 244-295 13-74 (77)
29 1wud_A ATP-dependent DNA helic 73.4 0.12 4E-06 38.1 -4.3 53 244-296 21-83 (89)
30 2gbz_A Oligoribonuclease; ORN, 73.2 14 0.00048 30.4 8.2 29 91-119 89-121 (194)
31 1zbu_A ERI-1 homolog, 3'-5' ex 73.0 13 0.00046 34.0 8.7 96 90-217 206-314 (349)
32 2rrd_A BLM HRDC domain, HRDC d 71.8 0.2 6.8E-06 37.9 -3.4 52 245-296 31-92 (101)
33 2kv2_A Bloom syndrome protein; 69.5 0.17 6E-06 36.8 -4.0 54 243-296 14-77 (85)
34 2dgz_A Werner syndrome protein 63.6 0.62 2.1E-05 35.8 -2.1 63 245-308 31-103 (113)
35 2e1f_A Werner syndrome ATP-dep 62.8 0.47 1.6E-05 35.9 -2.9 68 244-312 23-100 (103)
36 3k59_A POL II, DNA polymerase 47.7 1.3E+02 0.0044 30.7 11.2 51 151-212 293-349 (786)
37 2py5_A DNA polymerase; protein 45.6 55 0.0019 32.0 7.9 65 49-119 6-72 (575)
38 3ikm_A DNA polymerase subunit 41.8 16 0.00053 38.6 3.3 109 103-219 195-350 (1172)
39 1s5j_A DNA polymerase I; repli 38.5 3.1E+02 0.011 28.0 12.6 105 89-209 259-386 (847)
40 4hec_A Putative uncharacterize 31.7 1.8E+02 0.0063 23.9 7.9 18 198-215 164-181 (190)
41 1vig_A Vigilin; RNA-binding pr 28.2 15 0.00053 25.1 0.5 40 272-311 11-50 (71)
42 2ctm_A Vigilin; K homology typ 20.7 41 0.0014 24.4 1.7 35 270-304 21-55 (95)
43 1dtj_A RNA-binding neurooncolo 20.4 28 0.00095 23.8 0.6 33 272-304 9-41 (76)
No 1
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=100.00 E-value=6.4e-33 Score=266.81 Aligned_cols=250 Identities=21% Similarity=0.297 Sum_probs=207.9
Q ss_pred ccCeEEeCCcccchHHhhhccccCCCeEEEEeeecCCC-CCCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCc
Q 020975 25 VVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYI 103 (319)
Q Consensus 25 ~~~~~~I~t~~~L~~~~l~~~l~~~~~ia~D~E~~~~~-~~g~l~~lqls~~~~~~~id~~~l~~~~~~~L~~lLe~~~i 103 (319)
..+|.+|+|.+++.+ +++. +...+.+|||+|+.+.. +.+.+|+|||++.+++|+||+..++. .+..|+++|+|+++
T Consensus 107 ~~~y~~I~t~e~L~~-~l~~-L~~~~~vavDtE~~~~~~~~~~l~lIQLa~~~~~~lidpl~l~~-~l~~L~~lL~dp~i 183 (428)
T 3saf_A 107 ETPCHFISSLDELVE-LNEK-LLNCQEFAVNLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRS-DMYILNESLTDPAI 183 (428)
T ss_dssp GSCEEEECSHHHHHH-HHHH-HTTCSEEEEEEEEECTTCSSCEEEEEEEECSSCEEEEETTTTGG-GGGGGHHHHTCTTS
T ss_pred CCCcEEECCHHHHHH-HHHH-HhcCCeEEEEEEecCCCCCCCeEEEEEEEeCCcEEEEEeccchh-hHHHHHHHHcCCCc
Confidence 467899999999997 9987 77789999999998775 78999999999988899999987743 46889999999999
Q ss_pred eEEEeehhhhHHHHHHHcCCccccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCC
Q 020975 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183 (319)
Q Consensus 104 ~KV~hd~k~d~~~L~~~~gi~l~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~ 183 (319)
.||+||+|+|+.+|++.+|+.+.++||||+|+|+++++ + +||+.|++ +|||+++++.. ..+
T Consensus 184 ~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~--~-------~gL~~Lv~--~~Lg~~l~K~~--------~~s 244 (428)
T 3saf_A 184 VKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--R-------HSLDHLLK--LYCNVDSNKQY--------QLA 244 (428)
T ss_dssp EEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCS--C-------CSHHHHHH--HHHCCCCCCTT--------TTS
T ss_pred eEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCC--C-------CCHHHHHH--HHcCCCCCccc--------ccc
Confidence 99999999999999778999999999999999999974 2 58999999 99999987422 235
Q ss_pred CCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhch-----H-HHHHhhccc-ccc-----c--------------cc
Q 020975 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSL-----W-YLAVRGALY-CRC-----F--------------CI 237 (319)
Q Consensus 184 ~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~-----~-~l~~~~e~~-~~v-----l--------------~m 237 (319)
+|..|||+++++.|||.||+++++||+.|..+|.+.|. + .++.+.+.. .+. . .+
T Consensus 245 dW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 324 (428)
T 3saf_A 245 DWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHL 324 (428)
T ss_dssp CTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHTTCCCCCCCCCTTGGGHHHHTTCCCC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhhcCCCCCcccHHHHHHHhccCC
Confidence 89999999999999999999999999999999999885 1 223332221 110 0 00
Q ss_pred CCCc------cCCCCCCCCCCCcccccCccChHHHHHhhccCCCCcc----------hhhccccchHHHHHHhcc
Q 020975 238 NEND------YVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCN 296 (319)
Q Consensus 238 e~~g------~~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~~~~~~~~~~~~~~~~ 296 (319)
...+ +..||...|+.++.++.++..++.++++|..+|.+.. +.++++|..|+++++.|.
T Consensus 325 ~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g~~~l~~I~~a~ 399 (428)
T 3saf_A 325 NTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAR 399 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 0111 2278888899999999999999999999999996432 678899999999999885
No 2
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=99.98 E-value=3.3e-32 Score=259.29 Aligned_cols=256 Identities=24% Similarity=0.263 Sum_probs=212.5
Q ss_pred CeEEeCCcccchHHhhhccccCCCeEEEEeeecCCC-CCCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCceE
Q 020975 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITK 105 (319)
Q Consensus 27 ~~~~I~t~~~L~~~~l~~~l~~~~~ia~D~E~~~~~-~~g~l~~lqls~~~~~~~id~~~l~~~~~~~L~~lLe~~~i~K 105 (319)
+|.+|+|.+++.+ +++. +...+.++||+|+.+.. +.+.++++|+++++.+|++|+..+. .+..|+++|+|+++.|
T Consensus 2 ~~~~I~t~~~l~~-~~~~-l~~~~~va~D~E~~~~~~~~~~l~liqla~~~~~~lid~~~l~--~~~~L~~ll~d~~i~K 77 (375)
T 1yt3_A 2 NYQMITTDDALAS-LCEA-VRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT--DWSPLKAILRDPSITK 77 (375)
T ss_dssp CCEEECSHHHHHH-HHHH-HTTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCS--CCHHHHHHHHCTTSEE
T ss_pred CeEEeCCHHHHHH-HHHH-HcCCCeEEEEeeecCCCcCCCceEEEEEecCCcEEEEeCCCCC--ChHHHHHHHcCCCceE
Confidence 4678888888887 8876 66678899999998874 6789999999987788999865442 3578999999999999
Q ss_pred EEeehhhhHHHHHHHcCCccccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCCC
Q 020975 106 VIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFW 185 (319)
Q Consensus 106 V~hd~k~d~~~L~~~~gi~l~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w 185 (319)
|+||+|+|+.+|++.+|+.+.++||||+|+|++++. . .+||++|++ +|+|..+.| +. ..++|
T Consensus 78 v~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~~-~-------~~~L~~L~~--~~l~~~l~K-~~-------~~sdw 139 (375)
T 1yt3_A 78 FLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRP-M-------SWGFASMVE--EYSGVTLDK-SE-------SRTDW 139 (375)
T ss_dssp EESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCC-T-------TCCHHHHHH--HHHCCCCCC-TT-------TTSCT
T ss_pred EEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCCC-C-------ChhHHHHHH--HHcCCCCCC-Cc-------ccCCC
Confidence 999999999999766999999999999999999983 1 268999999 999988773 21 22599
Q ss_pred ccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhchHHH-HHhhccc-cccc-ccCCCc---------------------
Q 020975 186 TYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYL-AVRGALY-CRCF-CINEND--------------------- 241 (319)
Q Consensus 186 ~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~~~l-~~~~e~~-~~vl-~me~~g--------------------- 241 (319)
..|||+++++.|||.||++++.||+.|.++|++.|++++ |.++|+| .++. .++...
T Consensus 140 ~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~~~g~~~l~~~e~E~pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (375)
T 1yt3_A 140 LARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQL 219 (375)
T ss_dssp TSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCCGGGGGGGSTTGGGSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhcccCCCchHHHHhccCcccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999988 9999997 4444 332221
Q ss_pred cCCCCCCCCCCCcccccCccChHHHHHhhccCCCCc---------chhhccccchHHHHHHhcchhhhccCC
Q 020975 242 YVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKM---------GRIIGRRGSSILAIKESCNAEILIGGA 304 (319)
Q Consensus 242 ~~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (319)
...||...|+.++.++..+..++.++++|..+|.+. ++.++++|..++++++.+.+.-.-..+
T Consensus 220 L~~wR~~~A~~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~ig~~~~~~~~~g~~~l~~i~~~~~~~~~~~p 291 (375)
T 1yt3_A 220 LADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQTLPEDALP 291 (375)
T ss_dssp HHHHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCGGGSC
T ss_pred HHHHHHHHHHHhCCCcceEECHHHHHHHHHHCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCCHhhCC
Confidence 126788888899999999999999999999999643 246678999999999998654333333
No 3
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=99.97 E-value=2.4e-30 Score=248.67 Aligned_cols=250 Identities=21% Similarity=0.245 Sum_probs=202.9
Q ss_pred cCeEEeCCcccchHHhhhccccCCCeEEEEeeecCCC-CCCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCce
Q 020975 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYIT 104 (319)
Q Consensus 26 ~~~~~I~t~~~L~~~~l~~~l~~~~~ia~D~E~~~~~-~~g~l~~lqls~~~~~~~id~~~l~~~~~~~L~~lLe~~~i~ 104 (319)
..+.+|++.+++.+ +++. +.....+|||+|+.+.. +.+.+|++||++.+.+|++|+..+. ..+..|+++|+|++|.
T Consensus 85 ~~~~~I~t~~~L~~-~~~~-L~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~ylid~l~l~-~~l~~L~~lL~d~~i~ 161 (410)
T 2hbj_A 85 SVPIWVDTSTELES-MLED-LKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLR-ENLHILNEVFTNPSIV 161 (410)
T ss_dssp CCCEEECSHHHHHH-HHHH-HTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTT-TTGGGGHHHHTCTTSE
T ss_pred CCcEEeCCHHHHHH-HHHH-HhhCCceEEEeeecCCcCCCCcEEEEEEEECCcEEEEechhhh-hhHHHHHHHHcCCCce
Confidence 35788999888887 8876 66778899999998875 6899999999998889999975542 2467899999999999
Q ss_pred EEEeehhhhHHHHHHHcCCccccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCC
Q 020975 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184 (319)
Q Consensus 105 KV~hd~k~d~~~L~~~~gi~l~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~ 184 (319)
||+||+|+|+.+|++.+|+.+.++||||+|+|+++++ + +||+.|++ +|||..+.| +. ..++
T Consensus 162 KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~--~-------~~L~~L~~--~~lg~~l~K-~~-------~~sd 222 (410)
T 2hbj_A 162 KVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP--R-------HSLAYLLE--NFANFKTSK-KY-------QLAD 222 (410)
T ss_dssp EEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCS--C-------CSHHHHHH--HHSCCCCCC-TT-------TTSC
T ss_pred EEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCC--c-------cCHHHHHH--HHcCCCCCc-cc-------cccC
Confidence 9999999999999867999998899999999999975 2 58999999 999988763 21 2359
Q ss_pred CccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhchHHHHHh-hccc-cccc---------------------------
Q 020975 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVR-GALY-CRCF--------------------------- 235 (319)
Q Consensus 185 w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~~~l~~~-~e~~-~~vl--------------------------- 235 (319)
|..|||+++|+.|||.||++++.||+.|.++|++.|++.++.+ .+.. .+..
T Consensus 223 W~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~~~g~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
T 2hbj_A 223 WRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGVLYESRNVAKRRFEYSKYRPLTPSSEVYSPIEKESPWKIL 302 (410)
T ss_dssp TTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCEECCGGGCCSSCCSSEECCCCSSSSSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhhhccccccccccccccCCchhHHHHHH
Confidence 9999999999999999999999999999999999998765433 2211 1100
Q ss_pred ----ccCCCc------cCCCCCCCCCCCcccccCccChHHHHHhhccCCCCc----------chhhccccchHHHHHHhc
Q 020975 236 ----CINEND------YVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKM----------GRIIGRRGSSILAIKESC 295 (319)
Q Consensus 236 ----~me~~g------~~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~----------~~~~~~~~~~~~~~~~~~ 295 (319)
.+.... ...||...|+.++.++.++..++.++++|..+|.+. .+.++++|..|+++++.+
T Consensus 303 ~~~~~l~~~~~~l~~~L~~wR~~~Ar~~d~p~~~V~~D~~L~~iA~~~P~~~~~L~~i~g~~~~~~~~~g~~~l~~I~~~ 382 (410)
T 2hbj_A 303 MYQYNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDA 382 (410)
T ss_dssp SSCSCCCSTTHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHcCCCCcEEECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 001111 226777778889999999999999999999999643 257778999999999988
Q ss_pred ch
Q 020975 296 NA 297 (319)
Q Consensus 296 ~~ 297 (319)
.+
T Consensus 383 ~~ 384 (410)
T 2hbj_A 383 LR 384 (410)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 4
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=99.95 E-value=3.2e-27 Score=207.05 Aligned_cols=184 Identities=22% Similarity=0.215 Sum_probs=143.5
Q ss_pred cCeEEeCCcccch----HHhhhccccCCCeEEEEeeecCC---CCCCcEEEEEEEeC-CceEEEEccCCChhhHHHHHHH
Q 020975 26 VPIHIVTNASQLP----AEFLEPSSERQLVIGFDCEGVDL---CRHGSLCIMQLAFP-DAIYLVDAIQGGETVVKACKPA 97 (319)
Q Consensus 26 ~~~~~I~t~~~L~----~~~l~~~l~~~~~ia~D~E~~~~---~~~g~l~~lqls~~-~~~~~id~~~l~~~~~~~L~~l 97 (319)
..+.+|+|.+++. + +++. +...+.+|||+||.+. ++.+.++++|+|+. +++|+||+..+. .+...|+++
T Consensus 15 g~i~~i~~~~~~~~~~~~-~~~~-l~~~~~v~~D~E~~~~~~~~~~~~~~~iqla~~~~~~~~i~~~~~~-~~~~~L~~l 91 (208)
T 2e6m_A 15 GSIVYSYEASDCSFLSED-ISMR-LSDGDVVGFDMEWPPIYKPGKRSRVAVIQLCVSESKCYLFHISSMS-VFPQGLKML 91 (208)
T ss_dssp SEEEEECSHHHHHHHHHH-HHHH-CCTTCEEEEEEECCC---CCSCCCCCEEEEECSSSEEEEECGGGCS-SCCHHHHHH
T ss_pred CcEEEEeCHHHHHHHHHH-HHHH-hccCCEEEEEeecCCCCCCCCCCCeEEEEEecCCCeEEEEECcccc-cchHHHHHH
Confidence 4578899999887 4 4454 6667889999999876 35789999999985 689999887553 245789999
Q ss_pred HcCCCceEEEeehhhhHHHHHHHcCCccccEEe-chhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHH
Q 020975 98 LESSYITKVIHDCKRDSEALYFQFGIKLHNVVD-TQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRV 176 (319)
Q Consensus 98 Le~~~i~KV~hd~k~d~~~L~~~~gi~l~~vfD-t~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~ 176 (319)
|+|+++.||+||+|+|++.|.+.+|+.+.++|| ||+|+|++++. . .+||++|++ +|||..+.+.....
T Consensus 92 L~d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~~-~-------~~~L~~L~~--~~l~~~~~K~k~~~- 160 (208)
T 2e6m_A 92 LENKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKCA-E-------TWSLNGLVK--HVLGKQLLKDKSIR- 160 (208)
T ss_dssp HTCTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTCC-C-------CCCHHHHHH--HHHSCBCCCCHHHH-
T ss_pred hcCCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccCC-C-------ChhHHHHHH--HHcCCCcCCCCCee-
Confidence 999999999999999999997669999988999 99999999973 2 268999999 99998775311111
Q ss_pred HhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhchHHHHHhh
Q 020975 177 LLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRG 228 (319)
Q Consensus 177 ~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~~~l~~~~ 228 (319)
.++|..|||+++|+.|||.||+++++|++.|.++|++.|.+.+..+.
T Consensus 161 -----~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~~~~~~~~~~~ 207 (208)
T 2e6m_A 161 -----CSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDTVQVFALNKAE 207 (208)
T ss_dssp -----TSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC------------
T ss_pred -----eCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhcccc
Confidence 25999999999999999999999999999999999998877765543
No 5
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=99.94 E-value=1.7e-27 Score=239.56 Aligned_cols=233 Identities=20% Similarity=0.194 Sum_probs=195.8
Q ss_pred CeEEeCCcccchHHhhhccccCCCeEEEEeeecCCC-CCCcEEEEEEEe-CCceEEEEccC--------CC-hhhHHHHH
Q 020975 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAF-PDAIYLVDAIQ--------GG-ETVVKACK 95 (319)
Q Consensus 27 ~~~~I~t~~~L~~~~l~~~l~~~~~ia~D~E~~~~~-~~g~l~~lqls~-~~~~~~id~~~--------l~-~~~~~~L~ 95 (319)
.|.+|++.+++.+ |++. +...+.++||+|+++.+ +.++++++++++ .+..+||++.. +. .+++..|+
T Consensus 6 ~y~~I~~~~~l~~-~~~~-l~~~~~va~DtEttgl~~~~~~iv~I~~~~~~g~~~yip~~~~~~~~~~~l~~~~vl~~L~ 83 (605)
T 2kfn_A 6 NYVTILDEETLKA-WIAK-LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLK 83 (605)
T ss_dssp SSEECCSHHHHHH-HHHH-HHTSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHH
T ss_pred heEEecCHHHHHH-HHHh-cccCCeEEEEEecCCCCcccCceEEEEEEEcCCcEEEEeccccccccccccCHHHHHHHHH
Confidence 4677888888886 8876 66678899999999985 588999999997 67778874432 11 23567899
Q ss_pred HHHcCCCceEEEeehhhhHHHHHHHcCCcccc-EEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHH
Q 020975 96 PALESSYITKVIHDCKRDSEALYFQFGIKLHN-VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV 174 (319)
Q Consensus 96 ~lLe~~~i~KV~hd~k~d~~~L~~~~gi~l~~-vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~ 174 (319)
++|+|+++.||+||+|+|+.+|. .+|+.+.+ +||||+|+|+++|+..+ ++|++|++ +||+....+.++
T Consensus 84 ~~L~d~~i~kV~hnak~D~~~L~-~~Gi~l~~~~~DT~laayLL~p~~~~-------~~L~~La~--~~Lg~~~i~~~~- 152 (605)
T 2kfn_A 84 PLLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLESYILNSVAGR-------HDMDSLAE--RWLKHKTITFEE- 152 (605)
T ss_dssp HHHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHHHHHCTTSSC-------CSHHHHHH--HHSCCCCCCHHH-
T ss_pred HHHcCCCCeEEEECcHHHHHHHH-HCCCCCCCccccHHHHHHHhCCCCCC-------CCHHHHHH--HhcCCCcccHHH-
Confidence 99999999999999999999995 68999865 89999999999986433 68999999 998876543222
Q ss_pred HHHhcC--CCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhh-hchHHHHHhhccc-cccc-ccCCCc-cCCCCCC
Q 020975 175 RVLLRQ--DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ-QSLWYLAVRGALY-CRCF-CINEND-YVDWPPL 248 (319)
Q Consensus 175 ~~~~~~--~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~-~~~~~l~~~~e~~-~~vl-~me~~g-~~d~~~l 248 (319)
++++ ...+|..+|+ +++..||+.||.++++|+..|.++|++ .|++++|.++|+| .+|| .||.+| .+|...+
T Consensus 153 --~~gKg~~~~~~~~~~l-e~~~~yAa~Da~~~~~L~~~L~~~L~~~~~l~~L~~~iE~Pl~~vLa~ME~~Gi~vD~~~l 229 (605)
T 2kfn_A 153 --IAGKGKNQLTFNQIAL-EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVL 229 (605)
T ss_dssp --HHCSSTTCCCGGGSCH-HHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHH
T ss_pred --HhCCCcccCCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCeEeCHHHH
Confidence 2232 2247988887 678999999999999999999999999 9999999999999 8999 999999 9999999
Q ss_pred CCCCCcccccCccChHHHHHhhc--cCCC
Q 020975 249 PPVPDYLIVEGDVPEEEILSILD--VPPG 275 (319)
Q Consensus 249 ~a~~~~l~~~~~~~~~~i~~~ag--~~~~ 275 (319)
.++..++..++..++++|++++| +.|+
T Consensus 230 ~~~~~~~~~~~~~l~~~i~~~~g~~fN~~ 258 (605)
T 2kfn_A 230 HNHSEELTLRLAELEKKAHEIAGEEFNLS 258 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999999 4454
No 6
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=99.94 E-value=2e-27 Score=237.15 Aligned_cols=209 Identities=13% Similarity=0.028 Sum_probs=178.1
Q ss_pred CeEEEEeeecCCC-CCCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCceEEEeehhhhHHHHHHHcCCccc-c
Q 020975 50 LVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLH-N 127 (319)
Q Consensus 50 ~~ia~D~E~~~~~-~~g~l~~lqls~~~~~~~id~~~l~~~~~~~L~~lLe~~~i~KV~hd~k~d~~~L~~~~gi~l~-~ 127 (319)
...++|+|+.+.+ +.+.++++++++.+++|||++.. ......|+++|+|+++.||+||+|+|+++|. .+|+.+. .
T Consensus 30 ~~~aldtE~~~~~~~~a~Lvgisla~~~~a~yIp~~~--~~~l~~Lk~lLed~~i~KV~hn~K~Dl~vL~-~~Gi~l~g~ 106 (592)
T 3pv8_A 30 DKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPET--ALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGV 106 (592)
T ss_dssp SEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHH--HTTCHHHHHHHTCTTSEEEESSHHHHHHHHH-HTTCCCCCE
T ss_pred cCcEEEEEEcCCccCcccEEEEEEEcCCceEEEccch--hhHHHHHHHHHhCCCCeEEEechHHHHHHHH-HcCCCCCCc
Confidence 4568999998776 78899999999987789986532 1246789999999999999999999999995 7999984 5
Q ss_pred EEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHH
Q 020975 128 VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207 (319)
Q Consensus 128 vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~ 207 (319)
+||||+|+||++|+.++ ++|++|++ +|++..+.+.++.. +++ ....++.++.+..|||.||+++++
T Consensus 107 ~fDTmLAAYLL~p~~~~-------~~L~~La~--~yLg~~l~~~ee~~---gkg--~~~~~~~~e~~~~YAa~DA~~l~~ 172 (592)
T 3pv8_A 107 SFDLLLAAYLLDPAQGV-------DDVAAAAK--MKQYEAVRPDEAVY---GKG--AKRAVPDEPVLAEHLVRKAAAIWE 172 (592)
T ss_dssp EEEHHHHHHHHCGGGCC-------CSHHHHHG--GGTCCSSCCHHHHH---CSG--GGCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCCCCCC-------CCHHHHHH--HHcCCCCchHHHhc---Ccc--ccccCccHHHHHHHHHHHHHHHHH
Confidence 99999999999997544 57999999 99999887544432 211 112234557889999999999999
Q ss_pred HHHHHHHHHhhhchHHHHHhhccc-cccc-ccCCCc-cCCCCCCCCCCCcccccCccChHHHHHhhcc--CCC
Q 020975 208 IYHNMMKKLNQQSLWYLAVRGALY-CRCF-CINEND-YVDWPPLPPVPDYLIVEGDVPEEEILSILDV--PPG 275 (319)
Q Consensus 208 L~~~L~~~L~~~~~~~l~~~~e~~-~~vl-~me~~g-~~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~--~~~ 275 (319)
|++.|.++|++.+++.+|.++|+| .+|| .||.+| .+|...+.+++.++..++..++++|++++|. .|+
T Consensus 173 L~~~L~~~L~e~~l~~l~~~~E~pl~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~~fN~~ 245 (592)
T 3pv8_A 173 LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNIN 245 (592)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHHHHHHhcchhhhHHHHHHhHHHHHHHHHhcCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999998 9999 999999 9999999999999999999999999999994 454
No 7
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=99.92 E-value=1.5e-24 Score=189.48 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=131.8
Q ss_pred EEeCCcccchHHhhhccc------cCCCeEEEEeeecC-C------CCC--CcEEEEEEEeCCceEEEEccCCChhhHHH
Q 020975 29 HIVTNASQLPAEFLEPSS------ERQLVIGFDCEGVD-L------CRH--GSLCIMQLAFPDAIYLVDAIQGGETVVKA 93 (319)
Q Consensus 29 ~~I~t~~~L~~~~l~~~l------~~~~~ia~D~E~~~-~------~~~--g~l~~lqls~~~~~~~id~~~l~~~~~~~ 93 (319)
..|.+.+++.. +++. + ....+||||+||.+ . .+. +++|+||||+++++++|++.......+..
T Consensus 22 ~~v~~~~~l~~-~~~~-~~~~~~~~~~~vvg~DtEw~p~~~~~~~~~~~~~~~~~LiQla~~~~~~l~~l~~~~~~~L~~ 99 (206)
T 1vk0_A 22 IDVGSSTDISP-YLSL-IREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKD 99 (206)
T ss_dssp EECCSSCCCHH-HHHH-HHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGGHH
T ss_pred EEEecHHHHHH-HHHH-HHHhhhhcCCCEEEEEeeccCCCcccccccCCCCCceEEEEEecCCCeEEEeccccCCccHHH
Confidence 34666676775 6654 3 45678999999984 2 233 48999999998889999883111123455
Q ss_pred HHHHHcCCCceEEEeehhhhHHHHHHHcCCccccEEech-hHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchh-
Q 020975 94 CKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDTQ-IAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEK- 171 (319)
Q Consensus 94 L~~lLe~~~i~KV~hd~k~d~~~L~~~~gi~l~~vfDt~-lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k- 171 (319)
|+.+|+|++|.||||++++|+..|++.+|+.+.++|||+ +|+..++.... ..+||+.|++ .+||+++ |.
T Consensus 100 L~~lL~d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~------~~~gL~~Lv~--~~lg~~l-K~k 170 (206)
T 1vk0_A 100 LYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVL------EFLGTRELAH--RVLWSDL-GQL 170 (206)
T ss_dssp HHHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGG------GGCCHHHHHH--HHHCCCC-HHH
T ss_pred HHHHhcCCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCC------CCccHHHHHH--HHhCCcC-CCC
Confidence 889999999999999999999999888999999999997 77777664211 1379999999 9999999 32
Q ss_pred HHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHH
Q 020975 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (319)
Q Consensus 172 ~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~ 214 (319)
.... ++|.. ||+++|+.|||.||++++.||+.|.+
T Consensus 171 ~~~~-------SdW~~-pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 171 DSIE-------AKWEK-AGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHH-------HTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc-------CCCCC-cCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2233 39999 99999999999999999999999864
No 8
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=99.92 E-value=1.9e-25 Score=216.27 Aligned_cols=246 Identities=16% Similarity=0.174 Sum_probs=193.0
Q ss_pred EEeCCcccchHHhhhccccCC-CeEEEEeeecCCC-CCCcEEEEEEEeC-CceEEEEccCCCh--hhHHHHHHHHcCCCc
Q 020975 29 HIVTNASQLPAEFLEPSSERQ-LVIGFDCEGVDLC-RHGSLCIMQLAFP-DAIYLVDAIQGGE--TVVKACKPALESSYI 103 (319)
Q Consensus 29 ~~I~t~~~L~~~~l~~~l~~~-~~ia~D~E~~~~~-~~g~l~~lqls~~-~~~~~id~~~l~~--~~~~~L~~lLe~~~i 103 (319)
.+|++.+++.+ +++. +... +.++||+|+.+.. +.+.++++||++. +.+|+||+..... ..+..|+++|+|+
T Consensus 19 ~~I~t~e~L~~-~~~~-L~~~~~~vavDtE~~~~~~~~~~l~liQla~~~~~~~lid~l~~~~~~~~l~~L~~lL~d~-- 94 (440)
T 3cym_A 19 NVIDTLPAFRD-YCSE-LASSHGSLAADAERASGFRYGHEDWLVQFKRDGAGIGLLDPQALAAAGADWNDFNRAVGDA-- 94 (440)
T ss_dssp CEECSHHHHHH-HHHH-HHSCEEEEEEEEEECTTTSSSCCEEEEEEEEETTEEEEECHHHHHHTTCCHHHHHHHHTTC--
T ss_pred EeeCCHHHHHH-HHHH-HHhcCCeEEEEeeecCCCCCCCCEEEEEEEECCCcEEEEEcCCccccccCHHHHHHHHCCC--
Confidence 46888888887 8876 6566 7899999998764 6889999999985 5589998743210 1256899999997
Q ss_pred eEEEeehhhhHHHHHHHcCCccccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCC
Q 020975 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183 (319)
Q Consensus 104 ~KV~hd~k~d~~~L~~~~gi~l~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~ 183 (319)
.||+||+|+|+.+|. .+|+.+.++|||++|+|++++. + +||+.|++ .|+|..+.| + ...+
T Consensus 95 ~KV~h~~k~Dl~~L~-~~gi~~~~~fDt~lAa~lL~~~--~-------~gL~~L~~--~~lg~~~~K-~-------~~~s 154 (440)
T 3cym_A 95 VWILHDSLQDLPGFD-ELGMEPQRLFDTEIAARLLGLK--R-------FGLAAVTE--HFLGLTLAK-E-------HSAA 154 (440)
T ss_dssp EEEESSHHHHHHHHH-HHTCCCCEEEEHHHHHHHTTCS--S-------CSHHHHHH--HHHCEECCC-C-------CTTC
T ss_pred CEEEEcCHHHHHHHH-HcCCcCCceehHHHHHHHhCCC--C-------CCHHHHHH--HHhCCCccc-c-------cccC
Confidence 699999999999995 8999999999999999999973 2 68999999 999987763 2 1235
Q ss_pred CCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhchHHHHHhh-ccc----c--ccc------c------c--CCCc-
Q 020975 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLAVRG-ALY----C--RCF------C------I--NEND- 241 (319)
Q Consensus 184 ~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~~~l~~~~-e~~----~--~vl------~------m--e~~g- 241 (319)
+|..|||++++..|||.||++++.||+.|..+|.+.|++++..+. +.. . +.. . + ...+
T Consensus 155 dw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~~g~~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 234 (440)
T 3cym_A 155 DWSYRPLPRDWRNYAALDVELLIELETKMRAELKRQGKMEWAQEEFDYALKEGLGPRKEHLIPWMHVSHITEVMRDRQAL 234 (440)
T ss_dssp CTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSSCCCCSSGGGCCTTGGGGTTCHHHH
T ss_pred CCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHhccccccCCCchHHHHHhccccccCCCHHHH
Confidence 999999999999999999999999999999999999988876432 111 1 111 0 0 0011
Q ss_pred -----cCCCCCCCCCCCcccccCccChHHHHHhhccCCCCcc----------hhh------------------cc-ccch
Q 020975 242 -----YVDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RII------------------GR-RGSS 287 (319)
Q Consensus 242 -----~~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~------------------~~-~~~~ 287 (319)
...||...|+.++.++.++..++.++++|..+|.+.. +.. ++ +|..
T Consensus 235 ~~~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 314 (440)
T 3cym_A 235 AIVRALWTRRDELAREYDIAPTLLLSDSSIIEVAKRKPHNAAQFRSIRSINERVRIHTDSEQDKMFERYAPIQRKIKPSM 314 (440)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHSCHHHHHHHHHHCCCSHHHHHTCSGGGSCCCCCCSSTHHHHHHTTHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccEEECHHHHHHHHHHCCCCHHHHHhCCCCCchheecccchhhhhhcccchhhhhhhHHH
Confidence 2266777778899999999999999999999996432 223 66 8999
Q ss_pred HHHHHHhcchh
Q 020975 288 ILAIKESCNAE 298 (319)
Q Consensus 288 ~~~~~~~~~~~ 298 (319)
|+.+++.+.+.
T Consensus 315 ~l~~i~~~~~~ 325 (440)
T 3cym_A 315 WKNIIQDALAL 325 (440)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHhC
Confidence 99999988643
No 9
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=99.84 E-value=6.7e-22 Score=201.68 Aligned_cols=206 Identities=15% Similarity=0.010 Sum_probs=167.1
Q ss_pred eEEEEeeecCCC-CCCcEEEEEEEe--CCceEEEEccCCChhhHHHHHHHHcCCCceEEEeeh-hhhHHHHHHHc-----
Q 020975 51 VIGFDCEGVDLC-RHGSLCIMQLAF--PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDC-KRDSEALYFQF----- 121 (319)
Q Consensus 51 ~ia~D~E~~~~~-~~g~l~~lqls~--~~~~~~id~~~l~~~~~~~L~~lLe~~~i~KV~hd~-k~d~~~L~~~~----- 121 (319)
.++||+|++++. ..++++.+|+.. .+..+++|+..+. ..+..|+++|+ +++.||+||+ |+|+.+|.+.+
T Consensus 1 ~vv~D~ETtGl~~~~d~i~~iqi~~~~~~~~~~~~p~~i~-~~l~~L~~~l~-~~~~kV~HNa~kfD~~~L~~~~~~~~~ 78 (698)
T 1x9m_A 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDFG-AYLDALEAEVA-RGGLIVFHNGHKYDVPALTKLAKLQLN 78 (698)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGHH-HHHHHHHHHHH-TTCCEEESSTTTTHHHHHHHHHHHHHC
T ss_pred CEEEEcCCCCcCCCCCEEEEEEEEecCCCcEEEEChHHHH-HHHHHHHHHHh-cCCeEEEcCChHHHHHHHHHhhhhccc
Confidence 379999999986 578999999998 3578888765432 35788999999 9999999999 99999996443
Q ss_pred -CCccc--cEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhH--------HHHHHhc-----CC---C
Q 020975 122 -GIKLH--NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKE--------EVRVLLR-----QD---P 182 (319)
Q Consensus 122 -gi~l~--~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~--------~~~~~~~-----~~---~ 182 (319)
|+.+. .+||||+|+|++++...+ ++|++|++ +||+.++..-. ....+++ ++ .
T Consensus 79 ~Gi~l~~~~~~DTmlaayLL~p~~~~-------~~L~~La~--~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~ 149 (698)
T 1x9m_A 79 REFHLPRENCIDTLVLSRLIHSNLKD-------TDMGLLRS--GKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYV 149 (698)
T ss_dssp CCCCCCGGGEEEHHHHHHHHTTTSCC-------CTTTTSCG--GGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCccCCCCcchhHHHHHHHhCCCCCC-------CCHHHHHH--HHcccchhhhcccccccccCHHHHhCccccccccccc
Confidence 98876 599999999999996544 57899999 99833222100 0001111 11 1
Q ss_pred --CCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhchH---------------HHHHhhccc-cccc-ccCCCc-c
Q 020975 183 --QFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW---------------YLAVRGALY-CRCF-CINEND-Y 242 (319)
Q Consensus 183 --~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~~---------------~l~~~~e~~-~~vl-~me~~g-~ 242 (319)
.+|.. +++.+..||+.||.++++|++.|.++|++.+++ .+|.++|+| .+|+ .||.+| .
T Consensus 150 ~~~~~~~--~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~~~~l~~~~~~~~~~~~~~~l~~~~E~pl~~vLa~ME~~Gi~ 227 (698)
T 1x9m_A 150 DGMEWWN--FNEEMMDYNVQDVVVTKALLEKLLSDKHYFPPEIDFTDVGYTTFWSESLEAVDIEHRAAWLLAKQERNGFP 227 (698)
T ss_dssp TTGGGTS--CCHHHHHHHHHHHHHHHHHHHHHHTCTTTSCTTSCTTSSCHHHHHHHSCHHHHHHHHHHHHHHHHHHHCEE
T ss_pred ccCCccc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccccchhhHHHHHHHHHhHHHHHHHHHHHcCeE
Confidence 16864 558899999999999999999999999998875 688999998 8899 999999 9
Q ss_pred CCCCCCCCCCCcccccCccChHHHHHh
Q 020975 243 VDWPPLPPVPDYLIVEGDVPEEEILSI 269 (319)
Q Consensus 243 ~d~~~l~a~~~~l~~~~~~~~~~i~~~ 269 (319)
+|.+.+.++..++..++..++++++++
T Consensus 228 vD~~~l~~~~~~~~~~~~~l~~~~~~~ 254 (698)
T 1x9m_A 228 FDTKAIEELYVELAARRSELLRKLTET 254 (698)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998
No 10
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=99.81 E-value=5.6e-22 Score=195.95 Aligned_cols=174 Identities=14% Similarity=0.063 Sum_probs=153.8
Q ss_pred CCeEEEEeeecCCC-CCCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCceEEEeehhhhHHHHHHHcCCcccc
Q 020975 49 QLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHN 127 (319)
Q Consensus 49 ~~~ia~D~E~~~~~-~~g~l~~lqls~~~~~~~id~~~l~~~~~~~L~~lLe~~~i~KV~hd~k~d~~~L~~~~gi~l~~ 127 (319)
.+.+++|+|+.+.+ +.++++++++++++++|+++ .++..|+++|+| +.||+||+|+|+. .+|+.+..
T Consensus 10 p~~valDtE~~~~~~~~a~Lvgi~la~~~~a~~i~------~~l~~l~~~l~d--~~kV~hn~K~Dl~----~~Gi~~~~ 77 (540)
T 4dfk_A 10 PEGAFVGFVLSRKEPMWADLLALAAARGGRVHRAP------EPYKALRDLKEA--RGLLAKDLSVLAL----REGLGLPP 77 (540)
T ss_dssp CTTCEEEEEESSSCTTTCCEEEEEEEETTEEEECS------SHHHHHTTCSSB--CSTTHHHHHHHHH----HTTCCCCB
T ss_pred CCceEEEEEecCCccCcccEEEEEEEcCCEEEEeh------hhHHHHHHHHcC--CCEEEeccHHHHH----HcCCCCCc
Confidence 35699999999876 78899999999988888774 257889999998 8899999999998 57888777
Q ss_pred EEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHH
Q 020975 128 VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPY 207 (319)
Q Consensus 128 vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~ 207 (319)
+||||+|+|+++|+ + ++|++|++ +|++. +. .+|+.||.++++
T Consensus 78 ~fDT~laAyLL~p~--~-------~~L~~La~--~yl~~-~g--------------------------k~a~~DA~~t~~ 119 (540)
T 4dfk_A 78 GDDPMLLAYLLDPS--N-------TTPEGVAR--RYGGE-WT--------------------------EEAGERAALSER 119 (540)
T ss_dssp CCCHHHHHHHHCTT--C-------CCHHHHHH--HHTSC-CC--------------------------SCHHHHHHHHHH
T ss_pred ceeHHHHHHHhCCC--C-------CCHHHHHH--HHhhh-hc--------------------------cchHHHHHHHHH
Confidence 89999999999996 3 57999999 88864 11 025689999999
Q ss_pred HHHHHHHHH-hhhchHHHHHhhccc-cccc-ccCCCc-cCCCCCCCCCCCcccccCccChHHHHHhhcc
Q 020975 208 IYHNMMKKL-NQQSLWYLAVRGALY-CRCF-CINEND-YVDWPPLPPVPDYLIVEGDVPEEEILSILDV 272 (319)
Q Consensus 208 L~~~L~~~L-~~~~~~~l~~~~e~~-~~vl-~me~~g-~~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~ 272 (319)
|++.|.++| ++.+++.+|.++|+| .+|| .||.+| .+|...+.++..++..++..++++|++++|.
T Consensus 120 L~~~L~~~L~~~~~~~~~~~~iE~pl~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~ 188 (540)
T 4dfk_A 120 LFANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 188 (540)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHTHHHHHHHHHHHHHHCBEECHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHhcCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999 788999999999999 9999 999999 9999999999999999999999999999994
No 11
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=99.60 E-value=1.1e-16 Score=165.18 Aligned_cols=171 Identities=18% Similarity=0.156 Sum_probs=143.6
Q ss_pred CeEEEEeeecCCCCCCcEEEEEEEe-CCceEEEEccCCChhhHHHHHHHHcCCCceEEEeehhhhHHHHHHHcCCccccE
Q 020975 50 LVIGFDCEGVDLCRHGSLCIMQLAF-PDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNV 128 (319)
Q Consensus 50 ~~ia~D~E~~~~~~~g~l~~lqls~-~~~~~~id~~~l~~~~~~~L~~lLe~~~i~KV~hd~k~d~~~L~~~~gi~l~~v 128 (319)
..+++|+|+.+ ...+.+| +++|+ .++++|+++ . . ..|+++|+|+.+ |+|+|+++|. .+|+.+..+
T Consensus 305 ~~va~d~et~~-~~~~~l~-vg~a~~~g~a~yvp~-~---~--~~Lk~lLed~~i-----n~K~d~~~L~-~~Gi~~~~~ 370 (832)
T 1bgx_T 305 AFVGFVLSRKE-PMWADLL-ALAAARGGRVHRAPE-P---Y--KALRDLKEARGL-----LAKDLSVLAL-REGLGLPPG 370 (832)
T ss_dssp CCBEEECSSSC-TTTCCCC-EEECBSSSEEECCSC-H---H--HHHHHCSSBCBT-----THHHHHHHHH-HHTCCCCBC
T ss_pred ceEEEEEecCC-cccCcee-EEEEEcCCCEEEEEC-C---H--HHHHHHHhCCCC-----ChHHHHHHHH-HcCCccCcc
Confidence 45899999877 5456773 33776 467777744 1 1 569999999987 9999999995 799998877
Q ss_pred EechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHH
Q 020975 129 VDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYI 208 (319)
Q Consensus 129 fDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L 208 (319)
||||+|+||++|. + ++|++|++ +| | + .|. + . || .||.++++|
T Consensus 371 ~Dt~laayLl~p~--~-------~~l~~l~~--~~-g--------------k---~~~--~--~----ya-~da~~~~~l 412 (832)
T 1bgx_T 371 DDPMLLAYLLDPS--N-------TTPEGVAR--RY-G--------------G---EWT--E--E----AG-ERAALSERL 412 (832)
T ss_dssp CCHHHHHHHHCTT--C-------CSTTHHHH--HH-S--------------C---CCC--S--S----HH-HHHHHHHHH
T ss_pred cCHHHHHHHcCCC--C-------CCHHHHHH--Hh-C--------------C---Cch--H--H----HH-HHHHHHHHH
Confidence 9999999999996 3 46889998 66 2 1 231 1 1 77 699999999
Q ss_pred HHHHHHHHh-hhchHHHHHhhccc-cccc-ccCCCc-cCCCCCCCCCCCcccccCccChHHHHHhhcc
Q 020975 209 YHNMMKKLN-QQSLWYLAVRGALY-CRCF-CINEND-YVDWPPLPPVPDYLIVEGDVPEEEILSILDV 272 (319)
Q Consensus 209 ~~~L~~~L~-~~~~~~l~~~~e~~-~~vl-~me~~g-~~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~ 272 (319)
+..|.++|. +.+++.+|.++||| .+|| .||.+| .+|...+.++..++..++..++++|++++|.
T Consensus 413 ~~~l~~~L~~~~~~~~l~~~iE~pl~~vl~~mE~~Gi~vD~~~l~~~~~~~~~~~~~l~~~i~~~~g~ 480 (832)
T 1bgx_T 413 FANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 480 (832)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTHHHHHHHHHHHHHHCBCBCTTTHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHcCeeecHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999 88999999999999 9999 999999 9999999999999999999999999999994
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.67 E-value=1.6e-07 Score=82.95 Aligned_cols=155 Identities=12% Similarity=0.155 Sum_probs=99.8
Q ss_pred CcccchHHhhhccccCCCeEEEEeeecCCC-CCCcEEEEEEEe-----CCce-------EEEEccC-------------C
Q 020975 33 NASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAF-----PDAI-------YLVDAIQ-------------G 86 (319)
Q Consensus 33 t~~~L~~~~l~~~l~~~~~ia~D~E~~~~~-~~g~l~~lqls~-----~~~~-------~~id~~~-------------l 86 (319)
+.+.+.. +... +.....++||+|+++++ ...+++.|++.. .+.. .+|.+.. +
T Consensus 23 ~~~~~~~-l~~~-l~~~~~vviD~ETTGl~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GI 100 (235)
T 3v9w_A 23 DNAQLTG-LCDR-FRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGI 100 (235)
T ss_dssp ------C-HHHH-TTTEEEEEEEEEESSSCTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCC
T ss_pred ccccccC-chhc-ccCCcEEEEEEeCCCCCCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCC
Confidence 4444554 5554 66678899999999885 456665555542 1211 1233310 0
Q ss_pred Ch-----------hhHHHHHHHHcC-------CCceEEEeehhhhHHHHHH---HcCCcc-----ccEEechhHHhhhhh
Q 020975 87 GE-----------TVVKACKPALES-------SYITKVIHDCKRDSEALYF---QFGIKL-----HNVVDTQIAYSLIEE 140 (319)
Q Consensus 87 ~~-----------~~~~~L~~lLe~-------~~i~KV~hd~k~d~~~L~~---~~gi~l-----~~vfDt~lAayLL~~ 140 (319)
.. +++..|.+++++ .....|+||+++|+.+|.+ .+|+.. ..++||+.+++.+.+
T Consensus 101 t~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p 180 (235)
T 3v9w_A 101 DPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG 180 (235)
T ss_dssp CTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS
T ss_pred CHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC
Confidence 01 145566666653 4677899999999999853 348743 248999999998875
Q ss_pred hcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhc
Q 020975 141 QEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220 (319)
Q Consensus 141 ~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~ 220 (319)
. ++|+.+++ + +|++.... ...+|..||.++.+|+..|.+++++.|
T Consensus 181 ~----------~~L~~l~~--~-~gi~~~~~----------------------~~H~Al~DA~~ta~l~~~l~~~l~~~~ 225 (235)
T 3v9w_A 181 Q----------TVLSKACQ--T-AGMDFDST----------------------QAHSALYDTERTAVLFCEIVNRWKRLG 225 (235)
T ss_dssp C----------CSHHHHHH--H-HTCCCCTT----------------------TTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C----------CCHHHHHH--H-cCCCCCCC----------------------CCcChHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 47899986 4 46543210 012388999999999999999999988
Q ss_pred hHHH
Q 020975 221 LWYL 224 (319)
Q Consensus 221 ~~~l 224 (319)
.|++
T Consensus 226 ~~~l 229 (235)
T 3v9w_A 226 GWPL 229 (235)
T ss_dssp CSSC
T ss_pred Cccc
Confidence 8765
No 13
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.49 E-value=0.00097 Score=56.29 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=82.5
Q ss_pred cCCCeEEEEeeecCCC-CCCcEEEEEEEe--CCce-----EEEEccC-CC--------------------hhhHHHHHHH
Q 020975 47 ERQLVIGFDCEGVDLC-RHGSLCIMQLAF--PDAI-----YLVDAIQ-GG--------------------ETVVKACKPA 97 (319)
Q Consensus 47 ~~~~~ia~D~E~~~~~-~~g~l~~lqls~--~~~~-----~~id~~~-l~--------------------~~~~~~L~~l 97 (319)
.....++||+|+++++ ..+.++-|+... .++. .+|.+.. +. .+++..|..+
T Consensus 10 ~~~~~v~iD~ETTGl~~~~~~IieIg~v~~~~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~~~~ 89 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGF 89 (186)
T ss_dssp ---CEEEEEEEESCSCTTTCCEEEEEEEEEETTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCCCeEEEEEEEEEECCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence 4467899999999886 455554444332 2321 2333221 10 1244567777
Q ss_pred HcCCCceEEEeehhhhHHHHHH---HcCCcc--ccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhH
Q 020975 98 LESSYITKVIHDCKRDSEALYF---QFGIKL--HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKE 172 (319)
Q Consensus 98 Le~~~i~KV~hd~k~d~~~L~~---~~gi~l--~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~ 172 (319)
+.+ ...|+||+.+|+.+|.+ .+|+.. ..++||+..+..+. ... .++|+++++ ++|++...
T Consensus 90 l~~--~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~-------~~~L~~l~~---~~gi~~~~-- 154 (186)
T 2p1j_A 90 LED--SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLR-------SYSLDSVVE---KLGLGPFR-- 154 (186)
T ss_dssp SSS--CEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCS-------CCSHHHHHH---HTTCCSTT--
T ss_pred HCC--CEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcC-------CCCHHHHHH---HcCCCCCC--
Confidence 765 35699999999998853 356654 35899987665554 211 368999996 45754321
Q ss_pred HHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhc
Q 020975 173 EVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220 (319)
Q Consensus 173 ~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~ 220 (319)
...|..||.++..|+..+..+.+++|
T Consensus 155 ----------------------~H~Al~Da~~t~~l~~~l~~~~~~~~ 180 (186)
T 2p1j_A 155 ----------------------HHRALDDARVTAQVFLRFVEMMKKEG 180 (186)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHTTCC----
T ss_pred ----------------------CcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 02377899999999988876665554
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=97.44 E-value=0.0015 Score=55.33 Aligned_cols=140 Identities=20% Similarity=0.138 Sum_probs=82.3
Q ss_pred CCeEEEEeeecCCCCCCcEEEEEEEe---CCceE---EEEccC-C----------C----------hhhHHHHHHHHcCC
Q 020975 49 QLVIGFDCEGVDLCRHGSLCIMQLAF---PDAIY---LVDAIQ-G----------G----------ETVVKACKPALESS 101 (319)
Q Consensus 49 ~~~ia~D~E~~~~~~~g~l~~lqls~---~~~~~---~id~~~-l----------~----------~~~~~~L~~lLe~~ 101 (319)
...++||+|+++++....-.+++++. .++.. +|.+.. + . .++...|..++.+
T Consensus 5 ~~~vviD~ETTGl~~~~~~~iiei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l~~- 83 (189)
T 1wlj_A 5 REVVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKG- 83 (189)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTT-
T ss_pred CeEEEEEeECcCcCCCCCceEEEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHHCC-
Confidence 46799999999875332222334443 23332 333321 0 0 1245667778864
Q ss_pred CceEEEeehhhhHHHHHHHcCCccccEEechhHHhhhhh-hcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcC
Q 020975 102 YITKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEE-QEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQ 180 (319)
Q Consensus 102 ~i~KV~hd~k~d~~~L~~~~gi~l~~vfDt~lAayLL~~-~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~ 180 (319)
...|+||+.+|..+|... ..-..++||+......+. .... ...++|+.+++ +++|++.... .
T Consensus 84 -~~lV~hn~~fD~~~L~~~--~~~~~~idt~~~~~~~~~~~~p~----~~~~~L~~l~~--~~lgi~~~~~--------~ 146 (189)
T 1wlj_A 84 -KLVVGHDLKHDFQALKED--MSGYTIYDTSTDRLLWREAKLDH----CRRVSLRVLSE--RLLHKSIQNS--------L 146 (189)
T ss_dssp -SEEEESSHHHHHHHTTCC--CTTCEEEEGGGCHHHHHHHTC---------CCHHHHHH--HHTCCCCSCC--------T
T ss_pred -CEEEECCcHHHHHHHHHh--CCCCceechHhhhhhhhcccCCC----CCCccHHHHHH--HHcCCCCCCC--------C
Confidence 457999999999999532 222358999875332221 1000 02368999998 7788765410 0
Q ss_pred CCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 020975 181 DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219 (319)
Q Consensus 181 ~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~ 219 (319)
...+ |..||.++..|+..+.+++++.
T Consensus 147 ~~H~-------------Al~Da~ata~l~~~l~~~~~~~ 172 (189)
T 1wlj_A 147 LGHS-------------SVEDARATMELYQISQRIRARR 172 (189)
T ss_dssp TCCC-------------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcC-------------cHHHHHHHHHHHHHHHHHHHHh
Confidence 0111 7789999999999988877654
No 15
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.36 E-value=0.0029 Score=54.89 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=60.3
Q ss_pred CceEEEeehhhhHHHHHH---HcCCc---c--ccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHH
Q 020975 102 YITKVIHDCKRDSEALYF---QFGIK---L--HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEE 173 (319)
Q Consensus 102 ~i~KV~hd~k~d~~~L~~---~~gi~---l--~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~ 173 (319)
....|+||+.+|+.+|.+ .+|+. . ...+||+..+..+.+. ++|..+++ ++|++....
T Consensus 126 ~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~~----------~~L~~l~~---~~gi~~~~~-- 190 (224)
T 2f96_A 126 RAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQ----------TVLAKACQ---AAGMEFDNR-- 190 (224)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHSC----------CSHHHHHH---HTTCCCCTT--
T ss_pred CCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcCC----------CCHHHHHH---HcCCCcCCC--
Confidence 456799999999998853 35765 1 2579998776655431 46899886 457654310
Q ss_pred HHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhchH
Q 020975 174 VRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222 (319)
Q Consensus 174 ~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~~ 222 (319)
...+ |..||.++.+|+..+.+++.+.|.|
T Consensus 191 -------~~H~-------------Al~Da~~ta~l~~~l~~~~~~~~~~ 219 (224)
T 2f96_A 191 -------EAHS-------------ARYDTEKTAELFCGIVNRWKEMGGW 219 (224)
T ss_dssp -------SCCC-------------HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred -------CCCC-------------hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0011 7789999999999999998876654
No 16
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=97.12 E-value=0.0019 Score=56.96 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=64.5
Q ss_pred hHHHHHHHHcC--CCceEEEeeh-hhhHHHHHH---HcCCcc--c--cEEechhHHhhhhhhc--CC-CCCCCCcccHHh
Q 020975 90 VVKACKPALES--SYITKVIHDC-KRDSEALYF---QFGIKL--H--NVVDTQIAYSLIEEQE--GR-KRSPDDYISFVG 156 (319)
Q Consensus 90 ~~~~L~~lLe~--~~i~KV~hd~-k~d~~~L~~---~~gi~l--~--~vfDt~lAayLL~~~~--~~-~~L~~~~~sL~~ 156 (319)
++..|..++.+ +....|+||+ .+|..+|.+ ++|+.. . .++||+..+..+.... +. .. ...++|++
T Consensus 104 v~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~~~~~p~~~~~--~~~~~L~~ 181 (242)
T 3mxm_B 104 LAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGS--RKSYSLGS 181 (242)
T ss_dssp HHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHHHHCC--------CCCSHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeEeehHHHHHHHHhhcCccccCC--CCCcCHHH
Confidence 44566677776 2245699996 999998863 357663 2 4789998777543210 00 00 12478999
Q ss_pred hhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 020975 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (319)
Q Consensus 157 L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (319)
|++ +++|++... .++ |..||.++..|+..+..++.
T Consensus 182 l~~--~~~gi~~~~-----------~H~-------------Al~Da~ata~l~~~~~~~~~ 216 (242)
T 3mxm_B 182 IYT--RLYWQAPTD-----------SHT-------------AEGDDLTLLSICQWKPQALL 216 (242)
T ss_dssp HHH--HHHSSCCSS-----------TTS-------------HHHHHHHHHHHHTSSHHHHH
T ss_pred HHH--HHhCCCCCC-----------CcC-------------hHHHHHHHHHHHHHHHHHHH
Confidence 998 888876531 011 77899999998877665543
No 17
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=96.93 E-value=0.0071 Score=52.81 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=64.5
Q ss_pred hHHHHHHHHcCC--CceEEEeeh-hhhHHHHHH---HcCCccc---cEEechhHHhhhhhhcC-CCCCC-CCcccHHhhh
Q 020975 90 VVKACKPALESS--YITKVIHDC-KRDSEALYF---QFGIKLH---NVVDTQIAYSLIEEQEG-RKRSP-DDYISFVGLL 158 (319)
Q Consensus 90 ~~~~L~~lLe~~--~i~KV~hd~-k~d~~~L~~---~~gi~l~---~vfDt~lAayLL~~~~~-~~~L~-~~~~sL~~L~ 158 (319)
+...|..++..- ....|+||+ .+|..+|.+ .+|+... .++||+..+..+..... ....+ ...++|.+++
T Consensus 99 v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~ 178 (238)
T 1y97_A 99 VVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLF 178 (238)
T ss_dssp HHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHH
Confidence 345677788762 156799999 999998853 3576652 47999876666541100 00000 0136899999
Q ss_pred cCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 020975 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (319)
Q Consensus 159 ~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (319)
+ +++|++... ...|..||.++..++..+.+++.
T Consensus 179 ~--~~~gi~~~~------------------------~H~Al~Da~~ta~l~~~l~~~~~ 211 (238)
T 1y97_A 179 H--RYFRAEPSA------------------------AHSAEGDVHTLLLIFLHRAAELL 211 (238)
T ss_dssp H--HHHSSCCC---------------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred H--HHhCCCCcc------------------------CccHHHHHHHHHHHHHHHHHHHH
Confidence 7 778865431 01277899999999988876654
No 18
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=96.73 E-value=0.0068 Score=55.52 Aligned_cols=102 Identities=16% Similarity=0.067 Sum_probs=64.0
Q ss_pred hHHHHHHHHcC--CCceEEEee-hhhhHHHHHH---HcCCcc--c--cEEechhHHhhhhhhc-CCCCCCCCcccHHhhh
Q 020975 90 VVKACKPALES--SYITKVIHD-CKRDSEALYF---QFGIKL--H--NVVDTQIAYSLIEEQE-GRKRSPDDYISFVGLL 158 (319)
Q Consensus 90 ~~~~L~~lLe~--~~i~KV~hd-~k~d~~~L~~---~~gi~l--~--~vfDt~lAayLL~~~~-~~~~L~~~~~sL~~L~ 158 (319)
++..|..++.+ +....|+|| +.+|..+|.+ ++|+.. . .++||+.....+.... -........++|++++
T Consensus 104 v~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~ 183 (314)
T 3u3y_B 104 LAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIY 183 (314)
T ss_dssp HHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHH
T ss_pred HHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHH
Confidence 34556667776 225679999 8999998863 357664 2 3789988665222210 0000001247899999
Q ss_pred cCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 020975 159 ADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (319)
Q Consensus 159 ~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (319)
+ +|+|++... .++ |..||.++..|+..+.+++.
T Consensus 184 ~--~l~gi~~~~-----------aHr-------------Al~DA~ata~lf~~l~~~~l 216 (314)
T 3u3y_B 184 T--RLYWQAPTD-----------SHT-------------AEGHVLTLLSICQWKPQALL 216 (314)
T ss_dssp H--HHHSSCCSC-----------SSS-------------HHHHHHHHHHHHHSSHHHHH
T ss_pred H--HhcCCCCCC-----------CCC-------------HHHHHHHHHHHHHHHHHHHH
Confidence 8 778876431 011 77899999999887766554
No 19
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=96.41 E-value=0.063 Score=45.07 Aligned_cols=92 Identities=17% Similarity=0.107 Sum_probs=59.6
Q ss_pred hHHHHHHHHcCCCceEEEeehhhhHHHHHH---HcCCc---c---ccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcC
Q 020975 90 VVKACKPALESSYITKVIHDCKRDSEALYF---QFGIK---L---HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD 160 (319)
Q Consensus 90 ~~~~L~~lLe~~~i~KV~hd~k~d~~~L~~---~~gi~---l---~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~ 160 (319)
++..|..++.+. ..|+||+.+|+.+|.+ .+|+. + ...+||+..+..+.+.. ..+|.++++
T Consensus 85 v~~~~~~~l~~~--~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~--------~~~L~~l~~- 153 (194)
T 2gui_A 85 VADEFMDYIRGA--ELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK--------RNSLDALCA- 153 (194)
T ss_dssp HHHHHHHHHTTS--EEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS--------CCSHHHHHH-
T ss_pred HHHHHHHHHCCC--eEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC--------CCCHHHHHH-
Confidence 445677777653 4589999999998863 35766 2 35899987665554431 257899986
Q ss_pred CcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020975 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216 (319)
Q Consensus 161 ~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L 216 (319)
++|++... ...++ |..||.++.+|+..+..+.
T Consensus 154 --~~gi~~~~---------~~~H~-------------Al~Da~~ta~l~~~l~~~~ 185 (194)
T 2gui_A 154 --RYEIDNSK---------RTLHG-------------ALLDAQILAEVYLAMTGGQ 185 (194)
T ss_dssp --HTTCCCTT---------CSSCC-------------HHHHHHHHHHHHHHHTC--
T ss_pred --HcCcCCCC---------CCCCC-------------hHHHHHHHHHHHHHHHhcc
Confidence 45765421 00011 7789999999987775443
No 20
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=95.47 E-value=0.17 Score=48.94 Aligned_cols=141 Identities=8% Similarity=-0.108 Sum_probs=79.9
Q ss_pred CCCeEEEEeeecCCC-CCCcEEEEEEEe-C--Cc------eEEEEccC-C--C---------------------hhhHHH
Q 020975 48 RQLVIGFDCEGVDLC-RHGSLCIMQLAF-P--DA------IYLVDAIQ-G--G---------------------ETVVKA 93 (319)
Q Consensus 48 ~~~~ia~D~E~~~~~-~~g~l~~lqls~-~--~~------~~~id~~~-l--~---------------------~~~~~~ 93 (319)
....+.||+|+++++ ....++-|+... . +. ..+|.+.. . . .+++..
T Consensus 8 ~~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~ 87 (482)
T 2qxf_A 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAAR 87 (482)
T ss_dssp CCEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHH
T ss_pred CCCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHH
Confidence 457899999999886 445554333321 2 11 23333221 0 0 123455
Q ss_pred HHHHHcCCCceEEEee-hhhhHHHHHH---HcCCcc--------ccEEechhHHhhhhhhcC-CCCC-----CCCcccHH
Q 020975 94 CKPALESSYITKVIHD-CKRDSEALYF---QFGIKL--------HNVVDTQIAYSLIEEQEG-RKRS-----PDDYISFV 155 (319)
Q Consensus 94 L~~lLe~~~i~KV~hd-~k~d~~~L~~---~~gi~l--------~~vfDt~lAayLL~~~~~-~~~L-----~~~~~sL~ 155 (319)
+..++..+....|+|| +.+|..+|.+ ++|+.. ...+||+-.+..+.+-.. .... ....++|+
T Consensus 88 f~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~ 167 (482)
T 2qxf_A 88 IHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLE 167 (482)
T ss_dssp HHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHH
T ss_pred HHHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHH
Confidence 6667774556789999 8999988753 344432 347898876655542110 0000 01246789
Q ss_pred hhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 020975 156 GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215 (319)
Q Consensus 156 ~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~ 215 (319)
.+++ ++|++... . .+ |..||.++..|+..+..+
T Consensus 168 ~L~~---~~Gi~~~~--a---------Hr-------------AL~DA~aTa~l~~~l~~~ 200 (482)
T 2qxf_A 168 HLTK---ANGIEHSN--A---------HD-------------AMADVYATIAMAKLVKTR 200 (482)
T ss_dssp HHHH---HTTCCCC--------------C-------------TTHHHHHHHHHHHHHHHH
T ss_pred HHHH---HcCCCCCC--C---------CC-------------HHHHHHHHHHHHHHHHHh
Confidence 9885 56765421 0 11 557888888888777654
No 21
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=92.35 E-value=2.3 Score=38.15 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=59.7
Q ss_pred hHHHHHHHHcCCC-----ceEEEeehhhhHH-HHHH---HcCCccc----cEEechhHHhhhhhhcCCCCCCCCcccHHh
Q 020975 90 VVKACKPALESSY-----ITKVIHDCKRDSE-ALYF---QFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156 (319)
Q Consensus 90 ~~~~L~~lLe~~~-----i~KV~hd~k~d~~-~L~~---~~gi~l~----~vfDt~lAayLL~~~~~~~~L~~~~~sL~~ 156 (319)
++..|..++.+.. ...|+||+.+|.. +|.+ .+|+... .++||+....-+.. ..+ ..++|.+
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~-~~~-----~~~~L~~ 229 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYK-VPR-----SQTKLTI 229 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHT-CCG-----GGCSHHH
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhC-CCC-----CCccHHH
Confidence 4456667777641 3569999999998 8853 2566642 48898654322211 000 1257899
Q ss_pred hhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 020975 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (319)
Q Consensus 157 L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (319)
+++ ++|++... ..++ |..||.++..|+..+..+..
T Consensus 230 l~~---~~gi~~~g----------~~H~-------------Al~DA~ata~l~~~l~~~~~ 264 (299)
T 1zbh_A 230 MLE---KLGMDYDG----------RPNC-------------GLDDSKNIARIAVRMLQDGC 264 (299)
T ss_dssp HHH---HTTCCCCS----------CTTC-------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHH---HcCCCCCC----------CCCC-------------hHHHHHHHHHHHHHHHHhCC
Confidence 986 46765421 0011 77899999999988876554
No 22
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=91.66 E-value=3.7 Score=42.00 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=83.0
Q ss_pred CCeEEEEeeecCCC----CCCcEEEEEEEeCCceEEEEccCC---------Ch-hhHHHHHHHHc--CCCceEEEeeh-h
Q 020975 49 QLVIGFDCEGVDLC----RHGSLCIMQLAFPDAIYLVDAIQG---------GE-TVVKACKPALE--SSYITKVIHDC-K 111 (319)
Q Consensus 49 ~~~ia~D~E~~~~~----~~g~l~~lqls~~~~~~~id~~~l---------~~-~~~~~L~~lLe--~~~i~KV~hd~-k 111 (319)
-..++||+|+.+.. ....+..|++...+...++-.... .+ +.+..+..++. ||++ .+|||. .
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~~~i~~~~v~~~~~E~~LL~~f~~~i~~~dPDi-ivGyN~~~ 213 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDV-LITYNGDN 213 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEESSCCCCSSEEECSCHHHHHHHHHHHHHHHCCSE-EEESSTTT
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEeeccccccceEEcCCHHHHHHHHHHHHHhcCCCE-EEEeCCCC
Confidence 36799999998631 234454454443333333211110 11 34455555554 5765 499997 5
Q ss_pred hhHHHHHHH---cCCcc------------------------ccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCccc
Q 020975 112 RDSEALYFQ---FGIKL------------------------HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYC 164 (319)
Q Consensus 112 ~d~~~L~~~---~gi~l------------------------~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~l 164 (319)
+|+-.|.++ +|+.+ ...+|++....- . ..+ ..++|+++++ .+|
T Consensus 214 FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~---~---~~l--~sysL~~Va~--~~L 283 (775)
T 1qht_A 214 FDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRR---T---INL--PTYTLEAVYE--AVF 283 (775)
T ss_dssp THHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHH---H---SCC--SCCCHHHHHH--HHH
T ss_pred ccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHH---h---cCc--CcCCHHHHHH--HHh
Confidence 788776533 45442 125677654321 1 111 2478999998 899
Q ss_pred CCccch--hHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHH
Q 020975 165 GISYQE--KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMM 213 (319)
Q Consensus 165 g~~l~~--k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~ 213 (319)
|..-.+ .+++.. -|...+--...+.|+..||..+..|+..+.
T Consensus 284 g~~K~dv~~~~i~~-------~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 284 GKPKEKVYAEEIAQ-------AWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp CCCCCCCCHHHHHH-------HHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHH-------HHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 864332 223322 233322116789999999999999977654
No 23
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=86.35 E-value=5.6 Score=33.82 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=52.8
Q ss_pred hHHHHHHHHcCCCceEEEeeh--------hhhHHH-HH---HHcCCccc----cEEechhHHhhhhhhcCCCCCCCCccc
Q 020975 90 VVKACKPALESSYITKVIHDC--------KRDSEA-LY---FQFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYIS 153 (319)
Q Consensus 90 ~~~~L~~lLe~~~i~KV~hd~--------k~d~~~-L~---~~~gi~l~----~vfDt~lAayLL~~~~~~~~L~~~~~s 153 (319)
++..+..++.+..+ |+||+ .+|+.. |. ..+|+... ..+|++-...+...... .++
T Consensus 107 v~~~f~~~l~~~~l--v~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p-------~~~ 177 (224)
T 2xri_A 107 VLERVDEWMAKEGL--LDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWP-------KNG 177 (224)
T ss_dssp HHHHHHHHHHHTTT--TSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCC-------TTT
T ss_pred HHHHHHHHHhhccc--ccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCC-------CCC
Confidence 44566677776433 68888 999884 53 24576642 57885432222211100 157
Q ss_pred HHhhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHH
Q 020975 154 FVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (319)
Q Consensus 154 L~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~ 214 (319)
|.++++ ++|++... ...+ |..||.++..|+..+..
T Consensus 178 L~~l~~---~~gi~~~~----------~~H~-------------Al~DA~~ta~l~~~l~~ 212 (224)
T 2xri_A 178 LLDMNK---GLSLQHIG----------RPHS-------------GIDDCKNIANIMKTLAY 212 (224)
T ss_dssp HHHHHH---HTTCCCCS----------CTTC-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HcCCCCCC----------CCcC-------------hHHHHHHHHHHHHHHHH
Confidence 888885 55654321 0011 77899999998877754
No 24
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=86.25 E-value=2.6 Score=35.07 Aligned_cols=95 Identities=16% Similarity=0.176 Sum_probs=59.6
Q ss_pred hHHHHHHHHcCCC-----ceEEEeehhhhHH-HHHH---HcCCcc-c---cEEechhHHhhhhhhcCCCCCCCCcccHHh
Q 020975 90 VVKACKPALESSY-----ITKVIHDCKRDSE-ALYF---QFGIKL-H---NVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156 (319)
Q Consensus 90 ~~~~L~~lLe~~~-----i~KV~hd~k~d~~-~L~~---~~gi~l-~---~vfDt~lAayLL~~~~~~~~L~~~~~sL~~ 156 (319)
++..|..++.+.. ...|+||+.+|.. +|.+ .+|+.. . ..+||+..+..+-+... ..++|++
T Consensus 88 v~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~------~~~~L~~ 161 (204)
T 1w0h_A 88 VLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPR------SQTKLTI 161 (204)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCG------GGCSHHH
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCC------ccchHHH
Confidence 3455666776543 3469999999996 7753 356654 2 58999765543322100 1257899
Q ss_pred hhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHH
Q 020975 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKL 216 (319)
Q Consensus 157 L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L 216 (319)
+++ ++|++... ...+ |..||.++..|+..+.++.
T Consensus 162 l~~---~~gi~~~~----------~~H~-------------Al~Da~~ta~l~~~l~~~~ 195 (204)
T 1w0h_A 162 MLE---KLGMDYDG----------RPHC-------------GLDDSKNIARIAVRMLQDG 195 (204)
T ss_dssp HHH---HTTCCCCS----------CTTC-------------HHHHHHHHHHHHHHHHHTT
T ss_pred HHH---HcCCCCCC----------CccC-------------cHHHHHHHHHHHHHHHHCC
Confidence 986 46765431 0011 7789999999988876554
No 25
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=85.92 E-value=4 Score=36.82 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=55.4
Q ss_pred hHHHHHHHHcCCCceEEEeeh------hhhH-HHHH---HHcCCccc----cEEechhHHhhhhhhcCCCCCCCCcccHH
Q 020975 90 VVKACKPALESSYITKVIHDC------KRDS-EALY---FQFGIKLH----NVVDTQIAYSLIEEQEGRKRSPDDYISFV 155 (319)
Q Consensus 90 ~~~~L~~lLe~~~i~KV~hd~------k~d~-~~L~---~~~gi~l~----~vfDt~lAayLL~~~~~~~~L~~~~~sL~ 155 (319)
++..|..++.+..+ |+||+ .+|+ .+|. +.+|+... ..+||+-.+..+-+....... ...++|.
T Consensus 98 vl~~f~~~l~~~~l--vahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~-~~~~~L~ 174 (308)
T 3cg7_A 98 VYEQFQQWLITLGL--EEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKEL-SATTNIG 174 (308)
T ss_dssp HHHHHHHHHHHHCC--CTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHHHCCCCC-CCCSHHH
T ss_pred HHHHHHHHHHhCCc--CCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhcccccccc-ccCcCHH
Confidence 34556667775432 56666 8998 4654 24677652 478998654433332211000 0125789
Q ss_pred hhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 020975 156 GLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215 (319)
Q Consensus 156 ~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~ 215 (319)
++++ ++|++... ..++ |..||.++.+|+..+..+
T Consensus 175 ~l~~---~~gi~~~~----------~~Hr-------------Al~DA~ata~l~~~l~~~ 208 (308)
T 3cg7_A 175 KMNE---YYDLPTIG----------RAHD-------------AMDDCLNIATILQRMINM 208 (308)
T ss_dssp HHHH---HTTCCCCS----------CTTC-------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHH---HcCCCCCC----------CCcC-------------HHHHHHHHHHHHHHHHHc
Confidence 9885 56765431 0011 778999999988877543
No 26
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=79.75 E-value=7 Score=31.73 Aligned_cols=30 Identities=13% Similarity=-0.062 Sum_probs=21.7
Q ss_pred hHHHHHHHHcCC----CceEEEeehhhhHHHHHH
Q 020975 90 VVKACKPALESS----YITKVIHDCKRDSEALYF 119 (319)
Q Consensus 90 ~~~~L~~lLe~~----~i~KV~hd~k~d~~~L~~ 119 (319)
++..|..++.+- ....|+||+.+|..+|.+
T Consensus 84 v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~ 117 (180)
T 2igi_A 84 AELATLEFLKQWVPAGKSPICGNSIGQDRRFLFK 117 (180)
T ss_dssp HHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHH
Confidence 345666677651 345799999999999964
No 27
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=79.13 E-value=7 Score=32.47 Aligned_cols=51 Identities=12% Similarity=-0.106 Sum_probs=29.1
Q ss_pred hHHHHHHHHcC----CCceEEEeehhhhHHHHHHH---cCCcc-ccEEe--chh-HHhhhhh
Q 020975 90 VVKACKPALES----SYITKVIHDCKRDSEALYFQ---FGIKL-HNVVD--TQI-AYSLIEE 140 (319)
Q Consensus 90 ~~~~L~~lLe~----~~i~KV~hd~k~d~~~L~~~---~gi~l-~~vfD--t~l-AayLL~~ 140 (319)
+...+..++.. .+..-|+||+.+|...|.+. +|..+ ..++| |.- .+..+.|
T Consensus 88 v~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P 149 (186)
T 3tr8_A 88 AETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAP 149 (186)
T ss_dssp HHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCc
Confidence 34455556631 23456999999999998643 23223 24677 543 3444444
No 28
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=74.52 E-value=0.097 Score=37.36 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=40.8
Q ss_pred CCCCCCCCCCcccccCccChHHHHHhhccCCCCcc----------hhhccccchHHHHHHhc
Q 020975 244 DWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESC 295 (319)
Q Consensus 244 d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~~~~~~~~~~~~~~~ 295 (319)
.||...|...++++..+..+..+.++|...|.+.+ .-+++.|..|+++++..
T Consensus 13 ~wR~~~A~~~~vpp~~I~~d~~L~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~ 74 (77)
T 2rhf_A 13 ELRRELMKETGYSAFVVFTNATLEALAARQPRTLAELAEVPGLGEKRIEAYGERILDAINTV 74 (77)
T ss_dssp HHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45555566678888889999999999999996543 46667899999988765
No 29
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=73.41 E-value=0.12 Score=38.12 Aligned_cols=53 Identities=9% Similarity=0.045 Sum_probs=41.1
Q ss_pred CCCCCCCCCCcccccCccChHHHHHhhccCCCCcc----------hhhccccchHHHHHHhcc
Q 020975 244 DWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCN 296 (319)
Q Consensus 244 d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~~~~~~~~~~~~~~~~ 296 (319)
.||...|...++++.++..+..+.++|..+|.+.. .-+++.|..|+++++.+.
T Consensus 21 ~wR~~~A~~~~vpp~~If~D~tL~eiA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~I~~~~ 83 (89)
T 1wud_A 21 KLRKSIADESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHV 83 (89)
T ss_dssp HHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcceeeCHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45555566667778889999999999999996543 466788999999998764
No 30
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=73.16 E-value=14 Score=30.44 Aligned_cols=29 Identities=10% Similarity=-0.163 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCC----ceEEEeehhhhHHHHHH
Q 020975 91 VKACKPALESSY----ITKVIHDCKRDSEALYF 119 (319)
Q Consensus 91 ~~~L~~lLe~~~----i~KV~hd~k~d~~~L~~ 119 (319)
+..|..++.+.- ...|+||+.+|..+|.+
T Consensus 89 ~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~ 121 (194)
T 2gbz_A 89 EAQTVAFLGEWIRAGASPMCGNSICQDRRFLHR 121 (194)
T ss_dssp HHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCceEEecCHHHhHHHHHH
Confidence 445666676532 23799999999999964
No 31
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=73.04 E-value=13 Score=34.00 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=59.6
Q ss_pred hHHHHHHHHcCCC-----ceEEEeehhhhHH-HHHH---HcCCcc----ccEEechhHHhhhhhhcCCCCCCCCcccHHh
Q 020975 90 VVKACKPALESSY-----ITKVIHDCKRDSE-ALYF---QFGIKL----HNVVDTQIAYSLIEEQEGRKRSPDDYISFVG 156 (319)
Q Consensus 90 ~~~~L~~lLe~~~-----i~KV~hd~k~d~~-~L~~---~~gi~l----~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~ 156 (319)
++..|..++.+.. ...|+||+.+|+. +|.+ .+|+.. ..++||+....-+.. .. ...++|.+
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~-~~-----~~~~~L~~ 279 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYK-VP-----RSQTKLTI 279 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHT-CC-----GGGGSHHH
T ss_pred HHHHHHHHHhcccccCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhc-CC-----CCCCCHHH
Confidence 4456666776641 3569999999998 8753 356654 247898754322211 00 01257899
Q ss_pred hhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 020975 157 LLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (319)
Q Consensus 157 L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (319)
+++ ++|+.... ..++ |..||.++..|+..+..+..
T Consensus 280 l~~---~~gi~~~g----------~~Hr-------------Al~DA~ata~ll~~ll~~~~ 314 (349)
T 1zbu_A 280 MLE---KLGMDYDG----------RPHC-------------GLDDSKNIARIAVRMLQDGC 314 (349)
T ss_dssp HHH---HTTCCCCS----------CTTC-------------HHHHHHHHHHHHHHHHHTTC
T ss_pred HHH---HcCCCCCC----------CCCC-------------HHHHHHHHHHHHHHHHHhcc
Confidence 986 56765431 0011 77899999999888776554
No 32
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=71.76 E-value=0.2 Score=37.85 Aligned_cols=52 Identities=2% Similarity=-0.109 Sum_probs=39.2
Q ss_pred CCCCCCCCCcccccCccChHHHHHhhccCCCCcc----------hhhccccchHHHHHHhcc
Q 020975 245 WPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCN 296 (319)
Q Consensus 245 ~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~~~~~~~~~~~~~~~~ 296 (319)
||...|...++++.++..+..++++|...|.+.+ .-+++.|..|+++++.+-
T Consensus 31 wR~~~A~~~~vP~~~If~D~tL~eiA~~~P~t~~eL~~I~Gvg~~k~~~yG~~~L~~I~~~~ 92 (101)
T 2rrd_A 31 VCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS 92 (101)
T ss_dssp HHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCCHHHHHTSTTCCHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4444444566777778889999999999996533 456689999999998873
No 33
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=69.54 E-value=0.17 Score=36.77 Aligned_cols=54 Identities=2% Similarity=-0.089 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCcccccCccChHHHHHhhccCCCCcc----------hhhccccchHHHHHHhcc
Q 020975 243 VDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCN 296 (319)
Q Consensus 243 ~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~~~~~~~~~~~~~~~~ 296 (319)
..||...|...++++.++..+..+.++|...|.+.. .-+++.|..|+++++.+.
T Consensus 14 ~~wR~~~A~~~~vp~~~If~d~tL~~iA~~~P~t~~eL~~i~Gvg~~k~~~yG~~~l~~i~~~~ 77 (85)
T 2kv2_A 14 TEVCKSLGKVFGVHYFNIFNTVTLKKLAESLSSDPEVLLQIDGVTEDKLEKYGAEVISVLQKYS 77 (85)
T ss_dssp HHHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCSCHHHHHTSSSCCHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcceeECHHHHHHHHHhCCCCHHHHhhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 356666666778888889999999999999996543 466689999999998763
No 34
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=63.61 E-value=0.62 Score=35.85 Aligned_cols=63 Identities=2% Similarity=-0.145 Sum_probs=42.7
Q ss_pred CCCCCCCCCcccccCccChHHHHHhhccCCCCcc----------hhhccccchHHHHHHhcchhhhccCCCCCC
Q 020975 245 WPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCNAEILIGGAKGPP 308 (319)
Q Consensus 245 ~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (319)
||...|...++++.++..+..++++|...|.+.. .-+++. ..|+.+++.+..+..|.-...|.
T Consensus 31 wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~~~~~~~~~~~~ 103 (113)
T 2dgz_A 31 ARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLWEVIKHFCQTNSVQTDLFSS 103 (113)
T ss_dssp HHHHHHHHTTCCHHHHCCHHHHHHHHHHCCCSHHHHHHSSSCCTTGGGGG-HHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHHHHHhCCCCCeeECHHHHHHHHHhCCCCHHHHHhCCCCCHHHHHHH-HHHHHHHHHHHHhcCCCCCCCCC
Confidence 3333444556666778888899999998886532 456678 99999999876555454444443
No 35
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=62.76 E-value=0.47 Score=35.86 Aligned_cols=68 Identities=4% Similarity=-0.090 Sum_probs=44.7
Q ss_pred CCCCCCCCCCcccccCccChHHHHHhhccCCCCcc----------hhhccccchHHHHHHhcchhhhccCCCCCCChhh
Q 020975 244 DWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCNAEILIGGAKGPPDKVS 312 (319)
Q Consensus 244 d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
.||...|...++++.++..+..++++|...|.+.. .-+++. ..|+++++.+..+..|.-...|.-..+
T Consensus 23 ~wR~~~A~~~~vP~y~If~D~tL~emA~~~P~t~~eL~~I~Gvg~~K~~~y-~~~L~~I~~~~~~~~i~~~~~~~~~~~ 100 (103)
T 2e1f_A 23 EARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML-APLLEVIKHFCQTNSVQTDLFSSTKPQ 100 (103)
T ss_dssp HHHHHHHHHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHT-HHHHHHHHHHHHHTTCCCCCCCC----
T ss_pred HHHHHHHHHcCCCCCeeECHHHHHHHHHhCCCCHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHHhcCCCcCCCCCCCcc
Confidence 44444555566677778999999999999996532 456678 899999988765544544444444333
No 36
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=47.66 E-value=1.3e+02 Score=30.68 Aligned_cols=51 Identities=10% Similarity=0.154 Sum_probs=34.1
Q ss_pred cccHHhhhcCCcccCCccc---h---hHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHH
Q 020975 151 YISFVGLLADPRYCGISYQ---E---KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212 (319)
Q Consensus 151 ~~sL~~L~~~~~~lg~~l~---~---k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L 212 (319)
.++|+++++ .+||..-. . .+++.. -|... ....+.|+..||..+++|+..+
T Consensus 293 SysL~~Va~--~~Lg~~K~~~~~~~~~~eI~~-------~~~~~--~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 293 SFSLETVAQ--ELLGEGKSIDNPWDRMDEIDR-------RFAED--KPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp CCSHHHHHH--HHHCCCCC-CCHHHHHHHHHH-------HHHHC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH--HHhCCCCcccCccccHHHHHH-------HHhcC--HHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999 88885421 1 112222 12222 2577899999999999998774
No 37
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=45.59 E-value=55 Score=32.02 Aligned_cols=65 Identities=6% Similarity=-0.051 Sum_probs=38.6
Q ss_pred CCeEEEEeeecCCCCCCcEEEEEEEeC--CceEEEEccCCChhhHHHHHHHHcCCCceEEEeehhhhHHHHHH
Q 020975 49 QLVIGFDCEGVDLCRHGSLCIMQLAFP--DAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYF 119 (319)
Q Consensus 49 ~~~ia~D~E~~~~~~~g~l~~lqls~~--~~~~~id~~~l~~~~~~~L~~lLe~~~i~KV~hd~k~d~~~L~~ 119 (319)
...+++|+|+...+..+.+..+++... -..|+.+-. +..+-.++.+.+...++||+++|...|.+
T Consensus 6 ~~i~~~D~Et~~d~~~~~~~~i~~~~~~~~~~~~~~~~------l~~fi~~~~~~~~~i~~hNl~FD~~~l~~ 72 (575)
T 2py5_A 6 RKMYSCAFETTTKVEDCRVWAYGYMNIEDHSEYKIGNS------LDEFMAWVLKVQADLYFHNLKFAGAFIIN 72 (575)
T ss_dssp CCEEEEEEEECCBTTBCCEEEEEEEESSCTTCEEEESC------HHHHHHHHHHHCCEEEETTHHHHHHHHHH
T ss_pred ceEEEEEEEeecCCCCCceEEEEEEeCCceEEEEechh------HHHHHHHHHHcCCEEEEEChhhhHHHHHH
Confidence 467999999854444445555555543 234444211 23333344444455789999999988753
No 38
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase, disease mutation, DNA replication, DNA-binding, DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo sapiens}
Probab=41.83 E-value=16 Score=38.58 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=66.8
Q ss_pred ceEEEeehhhhHHHHHHHcCCccc--cEEechhHHhhhhh----h-------c-CCC----C-------------C----
Q 020975 103 ITKVIHDCKRDSEALYFQFGIKLH--NVVDTQIAYSLIEE----Q-------E-GRK----R-------------S---- 147 (319)
Q Consensus 103 i~KV~hd~k~d~~~L~~~~gi~l~--~vfDt~lAayLL~~----~-------~-~~~----~-------------L---- 147 (319)
-..||||+.+|-.-+...|.+.-. ..+|||-.+....- + . ++. . -
T Consensus 195 rlIVGHNVsyDRARI~EeY~l~~sk~rFlDTMSLHvavsG~~s~QR~~w~~~kk~k~~~~~e~~~~~~~~~~~~~~p~~~ 274 (1172)
T 3ikm_A 195 QLVVGHNVSFDRAHIREQYLIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKQGKHKVQPPTKQGQKSQRKARRGPAIS 274 (1172)
T ss_dssp CCCBCBCSSSSTTGGGTSSCSSCCCCCCCBTTHHHHHHSCCCHHHHHHHHHHHHC-------------------------
T ss_pred cEEEeCCcchhHHHHHHHHhcccCCceeeechhhhhhccccchhhHHHHHHhhhhcccchhhHHHHhhhccccccCcccc
Confidence 345999999999876678888763 37899987755321 0 0 000 0 0
Q ss_pred ------CCCcc--cHHhhhcCCcccCC-ccchhHHHHHHhcCCCCCCccCCCC---HHHHHHHHhhhhHHHHHHHHHHHH
Q 020975 148 ------PDDYI--SFVGLLADPRYCGI-SYQEKEEVRVLLRQDPQFWTYRPLT---ELMVRAAADDVRFLPYIYHNMMKK 215 (319)
Q Consensus 148 ------~~~~~--sL~~L~~~~~~lg~-~l~~k~~~~~~~~~~~~~w~~rpL~---~~~~~YAa~Da~~ll~L~~~L~~~ 215 (319)
....- ||.+++. -|+|. .++| +. +.+|.+. + ...+- .+.+.|||.||.++++++..+.+.
T Consensus 275 ~~~W~~~sS~N~~SL~dV~~--lhcg~~~ldK-~~-Rd~Fv~~--~--~~dI~~~fq~Lm~YCA~DV~aTh~V~~kl~P~ 346 (1172)
T 3ikm_A 275 SWDWLDISSVNSNSLAEVHR--LYVGGPPLEK-EP-RELFVKG--T--MKDIRENFQDLMQYCAQDVWATHEVFQQQLPL 346 (1172)
T ss_dssp -CCCCCCCCTTSHHHHHHHT--CSSCSCS--S-CS-SSSTTTT--C--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccCCCcCCHHHHHH--HhCCCcccCh-hh-HhhhhcC--C--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 00123 6888888 88886 6653 21 2122111 0 01111 566899999999999999999988
Q ss_pred Hhhh
Q 020975 216 LNQQ 219 (319)
Q Consensus 216 L~~~ 219 (319)
..++
T Consensus 347 F~er 350 (1172)
T 3ikm_A 347 FLER 350 (1172)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7663
No 39
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=38.49 E-value=3.1e+02 Score=27.97 Aligned_cols=105 Identities=10% Similarity=0.071 Sum_probs=60.9
Q ss_pred hhHHHHHHHHcCCCceEEEeeh-hhhHHHHHHH---cCCc-------c----------ccEEechhHHh--hhhhhcCCC
Q 020975 89 TVVKACKPALESSYITKVIHDC-KRDSEALYFQ---FGIK-------L----------HNVVDTQIAYS--LIEEQEGRK 145 (319)
Q Consensus 89 ~~~~~L~~lLe~~~i~KV~hd~-k~d~~~L~~~---~gi~-------l----------~~vfDt~lAay--LL~~~~~~~ 145 (319)
+++..+..++.+.. ..++||. .+|+-.|.++ +|+. + ...+|++-... .+..-.-..
T Consensus 259 ~LL~~f~~~i~~~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~ 337 (847)
T 1s5j_A 259 ELLGRFFDILLEYP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG 337 (847)
T ss_dssp HHHHHHHHHHTTCS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT
T ss_pred HHHHHHHHHhccCC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhhhhcccc
Confidence 46677888888876 5799997 5899887533 4553 1 11456553210 000000000
Q ss_pred CCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHH
Q 020975 146 RSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209 (319)
Q Consensus 146 ~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~ 209 (319)
.+ ..++|+++++ .+||..-. ... ..|.... ....+.|+-.||..+++|+
T Consensus 338 kl--~sysL~~Va~--~~Lg~~K~---dv~-------~~i~~~~-~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 338 KY--NEYNLDAVAK--ALLGTSKV---KVD-------TLISFLD-VEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp CC--SSCSHHHHHH--HHHCCCCC-----S-------SCTTTCC-HHHHHHHHHHHHHHHHHTT
T ss_pred cc--ccccHHHHHH--HHhCCCCc---chh-------Hhhhhcc-HHHHHHHHHHHHHHHHHHH
Confidence 11 2478999998 89886422 110 1232211 2678899999999999985
No 40
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=31.74 E-value=1.8e+02 Score=23.92 Aligned_cols=18 Identities=17% Similarity=0.002 Sum_probs=13.4
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 020975 198 AADDVRFLPYIYHNMMKK 215 (319)
Q Consensus 198 Aa~Da~~ll~L~~~L~~~ 215 (319)
|-.||.+.++.+..+...
T Consensus 164 AL~DAR~n~~~~~~~~~~ 181 (190)
T 4hec_A 164 ALVDARDQLRRFRLITST 181 (190)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHhCc
Confidence 678888888888777544
No 41
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=28.15 E-value=15 Score=25.08 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=31.0
Q ss_pred cCCCCcchhhccccchHHHHHHhcchhhhccCCCCCCChh
Q 020975 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311 (319)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (319)
.+|...+.+|+..|.+|..|.+..++.+.|.-...+++.|
T Consensus 11 I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V 50 (71)
T 1vig_A 11 IDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLI 50 (71)
T ss_dssp ECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEE
T ss_pred ECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEE
Confidence 4566778899999999999999999988886543343344
No 42
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.68 E-value=41 Score=24.38 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=30.3
Q ss_pred hccCCCCcchhhccccchHHHHHHhcchhhhccCC
Q 020975 270 LDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGA 304 (319)
Q Consensus 270 ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (319)
...+|...+.+|++.|..|..|.+..++.|.|...
T Consensus 21 i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~ 55 (95)
T 2ctm_A 21 VPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQS 55 (95)
T ss_dssp EECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCT
T ss_pred EEECHHHccccCCCCcchHHHHHHHHCCeEEecCC
Confidence 45677888899999999999999999999998654
No 43
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=20.43 E-value=28 Score=23.83 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=28.3
Q ss_pred cCCCCcchhhccccchHHHHHHhcchhhhccCC
Q 020975 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIGGA 304 (319)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (319)
+|+...+.+|++.|.+|..|-+...+.+.|...
T Consensus 9 Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~ 41 (76)
T 1dtj_A 9 VPENLVGAILGKGGKTLVEYQELTGARIQISKK 41 (76)
T ss_dssp EETTTHHHHHCSTTHHHHHHHHHHCCEEEECCT
T ss_pred EChHHcceEECCCchHHHHHHHHhCCEEEECcC
Confidence 345677899999999999999999999888764
Done!