Query 020975
Match_columns 319
No_of_seqs 225 out of 1424
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 10:56:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020975.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020975hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hbka2 c.55.3.5 (A:129-420) E 100.0 4.8E-33 3.5E-37 252.5 18.4 179 25-225 82-261 (292)
2 d1yt3a3 c.55.3.5 (A:1-193) Rib 100.0 3.2E-32 2.4E-36 234.4 17.7 183 26-230 1-185 (193)
3 d1vk0a_ c.55.3.5 (A:) Hypothet 99.9 1.1E-24 7.7E-29 188.7 16.7 169 29-214 22-205 (206)
4 d1kfsa1 c.55.3.5 (A:324-518) E 99.9 2.2E-24 1.6E-28 183.8 16.8 178 27-218 6-195 (195)
5 d2hhva1 c.55.3.5 (A:298-468) E 99.9 5.1E-23 3.7E-27 173.1 14.6 153 49-218 16-170 (171)
6 d1wlja_ c.55.3.5 (A:) Interfer 98.0 1.9E-05 1.4E-09 63.5 10.0 137 51-220 2-168 (173)
7 d1x9ma1 c.55.3.5 (A:1-210) Exo 97.8 2.1E-05 1.5E-09 65.1 8.1 160 51-217 1-184 (204)
8 d3b6oa1 c.55.3.5 (A:9-234) Thr 96.2 0.018 1.3E-06 47.4 10.9 99 93-217 99-208 (226)
9 d1tgoa1 c.55.3.5 (A:1-347) Exo 94.7 0.52 3.8E-05 41.0 15.7 148 50-215 136-329 (347)
10 d1y97a1 c.55.3.5 (A:1-228) Thr 94.6 0.19 1.4E-05 40.9 11.9 91 101-217 110-209 (228)
11 d1qtma1 c.55.3.5 (A:293-422) E 94.1 0.17 1.2E-05 36.7 8.7 117 50-217 13-129 (130)
12 d2guia1 c.55.3.5 (A:7-180) N-t 93.1 0.81 5.9E-05 34.7 12.4 88 90-212 76-172 (174)
13 d1qtma2 e.8.1.1 (A:423-831) DN 92.1 0.001 7.6E-08 60.7 -7.7 54 219-272 2-58 (409)
14 d2cpra1 a.60.8.4 (A:483-595) E 91.7 0.0061 4.4E-07 45.4 -2.3 56 243-298 32-97 (113)
15 d2f96a1 c.55.3.5 (A:19-220) Ri 91.0 2.4 0.00018 32.5 13.2 88 103-222 109-201 (202)
16 d1kfsa2 e.8.1.1 (A:519-928) DN 90.2 0.0021 1.5E-07 58.8 -7.6 58 219-276 2-64 (410)
17 d1yt3a1 a.60.8.3 (A:194-294) R 88.2 0.013 9.2E-07 42.5 -3.1 54 244-297 29-91 (101)
18 d2hbka1 a.60.8.4 (A:421-516) E 86.8 0.012 9.1E-07 42.2 -3.8 55 244-298 27-91 (96)
19 d2hhva2 e.8.1.1 (A:469-876) DN 81.6 0.012 8.7E-07 53.4 -7.4 55 222-276 3-62 (408)
20 d1q8ia1 c.55.3.5 (A:2-389) Exo 72.9 23 0.0017 30.5 12.7 104 90-212 203-345 (388)
21 d2qxfa1 c.55.3.5 (A:8-474) Exo 70.6 18 0.0013 31.7 11.6 105 92-225 79-201 (467)
22 d1wuda1 a.60.8.1 (A:530-606) H 59.0 0.16 1.2E-05 34.5 -4.1 45 251-295 19-73 (77)
23 d1viga_ d.51.1.1 (A:) Vigilin 45.9 2.4 0.00017 27.6 0.4 40 272-311 11-50 (71)
24 d1s5ja1 c.55.3.5 (A:40-449) Ex 43.8 92 0.0067 26.5 14.6 109 89-213 255-386 (410)
25 d2ctea1 d.51.1.1 (A:8-88) Vigi 39.1 6.2 0.00046 26.1 1.8 40 272-311 16-55 (81)
26 d1wvna1 d.51.1.1 (A:5-74) Poly 31.8 4.3 0.00031 26.2 -0.2 31 275-305 11-41 (70)
27 d2ctka1 d.51.1.1 (A:8-98) Vigi 31.6 3.9 0.00028 27.9 -0.4 41 272-312 16-56 (91)
28 d2ctma1 d.51.1.1 (A:8-88) Vigi 29.5 9.3 0.00067 25.2 1.3 36 270-305 14-49 (81)
29 d2ctla1 d.51.1.1 (A:8-91) Vigi 29.5 9.7 0.00071 25.2 1.4 30 272-301 16-45 (84)
30 d2d5ra1 c.55.3.9 (A:11-262) CC 24.9 78 0.0057 25.3 6.7 87 98-219 136-238 (252)
31 d2je6i3 d.51.1.1 (I:153-221) E 24.3 8.4 0.00061 24.8 0.3 32 271-302 6-37 (69)
32 d2ba0a3 d.51.1.1 (A:136-219) E 23.5 9.1 0.00066 25.7 0.3 32 271-302 6-37 (84)
33 d2py5a1 c.55.3.5 (A:5-187) Exo 21.8 68 0.0049 24.5 5.4 63 50-118 3-67 (183)
34 d1we8a_ d.51.1.1 (A:) Tudor an 21.1 12 0.00085 26.0 0.5 31 272-302 21-51 (104)
35 d2e1fa1 a.60.8.1 (A:1142-1235) 20.4 2.2 0.00016 29.6 -3.6 43 251-294 28-80 (94)
36 d1j4wa2 d.51.1.1 (A:104-174) F 20.0 17 0.0012 23.1 1.1 32 273-304 8-39 (71)
No 1
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=4.8e-33 Score=252.54 Aligned_cols=179 Identities=26% Similarity=0.293 Sum_probs=160.0
Q ss_pred ccCeEEeCCcccchHHhhhccccCCCeEEEEeeecCCC-CCCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCc
Q 020975 25 VVPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYI 103 (319)
Q Consensus 25 ~~~~~~I~t~~~L~~~~l~~~l~~~~~ia~D~E~~~~~-~~g~l~~lqls~~~~~~~id~~~l~~~~~~~L~~lLe~~~i 103 (319)
..++.+|+|.++|.+ +++. +.....+|||+|+.+.. +.|.+|+||||+.+++|+||+..+... +..|+++|+|++|
T Consensus 82 ~t~~~~Vdt~e~L~~-li~~-L~~~~~iavDtE~~~~~s~~g~l~LiQiat~~~~~iiD~~~l~~~-l~~L~~ll~d~~I 158 (292)
T d2hbka2 82 DSVPIWVDTSTELES-MLED-LKNTKEIAVDLEHHDYRSYYGIVCLMQISTRERDYLVDTLKLREN-LHILNEVFTNPSI 158 (292)
T ss_dssp GCCCEEECSHHHHHH-HHHH-HTTCSEEEEEEEEECSSSSSCEEEEEEEECSSCEEEEETTTTTTT-GGGGHHHHTCTTS
T ss_pred CCCcEEeCCHHHHHH-HHHH-HhcCCcEEEEEEeCcCcccCCeEEEEEEEeCCccEEEEecccccc-hHHHHHHHhccCe
Confidence 456789999999998 9998 88999999999998875 789999999999999999999887643 5789999999999
Q ss_pred eEEEeehhhhHHHHHHHcCCccccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCC
Q 020975 104 TKVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQ 183 (319)
Q Consensus 104 ~KV~hd~k~d~~~L~~~~gi~l~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~ 183 (319)
.||+||+++|+.+|++.+|+.+.++||||+|+++++.. ..||+.|++ +|+|++++|..+ .+
T Consensus 159 ~KV~H~~~~Di~~L~~~~g~~~~n~fDT~~aa~~l~~~---------~~sL~~L~~--~yl~~~ldK~~q--------~S 219 (292)
T d2hbka2 159 VKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP---------RHSLAYLLE--NFANFKTSKKYQ--------LA 219 (292)
T ss_dssp EEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCS---------CCSHHHHHH--HHHCCCCCCTTT--------TS
T ss_pred EEEeechHhhhhhhhhcccccccchHHHHHHHHHhCcc---------ccchHHHHH--Hhhhhccccccc--------cc
Confidence 99999999999999989999999999999999999753 268999999 999999985332 25
Q ss_pred CCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhchHHHH
Q 020975 184 FWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225 (319)
Q Consensus 184 ~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~~~l~ 225 (319)
+|..|||+++|+.|||.||++++.||+.|+.+|.+.|.....
T Consensus 220 dW~~RPLs~~qi~YAa~Da~~Ll~ly~~L~~~L~~~~~l~~v 261 (292)
T d2hbka2 220 DWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNKLAGV 261 (292)
T ss_dssp CTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999988755443
No 2
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=99.98 E-value=3.2e-32 Score=234.43 Aligned_cols=183 Identities=24% Similarity=0.280 Sum_probs=160.3
Q ss_pred cCeEEeCCcccchHHhhhccccCCCeEEEEeeecCCC-CCCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCce
Q 020975 26 VPIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYIT 104 (319)
Q Consensus 26 ~~~~~I~t~~~L~~~~l~~~l~~~~~ia~D~E~~~~~-~~g~l~~lqls~~~~~~~id~~~l~~~~~~~L~~lLe~~~i~ 104 (319)
++|.+|+|.+++++ +++. +...+.+|||+||.+.. +.+++|++|+++++++|+||+..... ...++++|+|+++.
T Consensus 1 ~~y~~I~t~~~l~~-~~~~-l~~~~~i~~DtE~~~~~~~~~~l~liQi~~~~~~~~id~~~~~~--~~~l~~ll~~~~i~ 76 (193)
T d1yt3a3 1 MNYQMITTDDALAS-LCEA-VRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITD--WSPLKAILRDPSIT 76 (193)
T ss_dssp CCCEEECSHHHHHH-HHHH-HTTSSEEEEEEEEECCSCSSCEEEEEEEECSSCEEEECGGGCSC--CHHHHHHHHCTTSE
T ss_pred CeEEEECCHHHHHH-HHHH-HhcCCeEEEECcccCCCcCCCcEEEEEEecCCcceeehhcchhh--hHHHHHHhcCCCce
Confidence 46899999999997 9988 88999999999999875 78999999999999999999987643 45678999999999
Q ss_pred EEEeehhhhHHHHHHHcCCccccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCC
Q 020975 105 KVIHDCKRDSEALYFQFGIKLHNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQF 184 (319)
Q Consensus 105 KV~hd~k~d~~~L~~~~gi~l~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~ 184 (319)
||+||+++|+.+|.+.+|+.+.+++|||+|+++++... .+||+.+++ ++||++++|..+ .++
T Consensus 77 Kv~hn~~~D~~~L~~~~g~~~~~~~Dt~~~~~~l~~~~--------~~~L~~l~~--~~lg~~ldK~~q--------~sd 138 (193)
T d1yt3a3 77 KFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPM--------SWGFASMVE--EYSGVTLDKSES--------RTD 138 (193)
T ss_dssp EEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTCCT--------TCCHHHHHH--HHHCCCCCCTTT--------TSC
T ss_pred EEEecchhhhhhhhhhcCccccccchhhHHHhhhcccc--------ccchhhHHh--hhccccccchhh--------ccc
Confidence 99999999999998899999999999999999998642 268999999 999999885322 259
Q ss_pred CccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhchHH-HHHhhcc
Q 020975 185 WTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWY-LAVRGAL 230 (319)
Q Consensus 185 w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~~~-l~~~~e~ 230 (319)
|..|||+++|+.|||.||+++++||+.|..++++.|... ++.+.++
T Consensus 139 W~~rPL~~~qi~YAA~Dv~~ll~L~~~L~~~l~~~~~l~~~~~e~~~ 185 (193)
T d1yt3a3 139 WLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRL 185 (193)
T ss_dssp TTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999988655 4444444
No 3
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.92 E-value=1.1e-24 Score=188.72 Aligned_cols=169 Identities=14% Similarity=0.102 Sum_probs=135.2
Q ss_pred EEeCCcccchHHhhhcc-----ccCCCeEEEEeeecCCC---------CCCcEEEEEEEeCCceEEEEccCCChhhHHHH
Q 020975 29 HIVTNASQLPAEFLEPS-----SERQLVIGFDCEGVDLC---------RHGSLCIMQLAFPDAIYLVDAIQGGETVVKAC 94 (319)
Q Consensus 29 ~~I~t~~~L~~~~l~~~-----l~~~~~ia~D~E~~~~~---------~~g~l~~lqls~~~~~~~id~~~l~~~~~~~L 94 (319)
..+.+.+++.. ++... +.....||||+||.+.. ..+++|++|||+++.+|+|++.......+..|
T Consensus 22 i~~~~~~~~~~-~~~~i~~~~~~~~~~~v~~D~Ew~~~~~~~~~~~~~~~~~vallQl~t~~~~~l~~l~~~~~~~~~~L 100 (206)
T d1vk0a_ 22 IDVGSSTDISP-YLSLIREDSILNGNRAVIFDVYWDVGFPETETKTKTSGWSLSSVKLSTRNLCLFLRLPKPFHDNLKDL 100 (206)
T ss_dssp EECCSSCCCHH-HHHHHHHHHHHHSTTEEEEEEEEECCC------CGGGGCEEEEEEEECSSEEEEEECCSSCCGGGHHH
T ss_pred EecCCHHHHHH-HHHHHHHHHhhcCCCEEEEEeecCCCCCcccccccccCceeEEEEEEeCCCEEEEECCccccccHHHH
Confidence 33566666665 65431 23457899999997652 13579999999999999999876654567899
Q ss_pred HHHHcCCCceEEEeehhhhHHHHHHHcCCccccEEec-hhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHH
Q 020975 95 KPALESSYITKVIHDCKRDSEALYFQFGIKLHNVVDT-QIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEE 173 (319)
Q Consensus 95 ~~lLe~~~i~KV~hd~k~d~~~L~~~~gi~l~~vfDt-~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~ 173 (319)
+++|+|++|.||||++++|+..|.+.||+.+.+++|+ ++|+++++..... .+||++|++ ++||..+.+.+.
T Consensus 101 ~~~L~~~~i~kVG~~i~~D~~~L~~~~gi~~~~~~Dl~~la~~~~~~~~~~------~~gL~~L~~--~~Lg~~l~K~~~ 172 (206)
T d1vk0a_ 101 YRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLE------FLGTRELAH--RVLWSDLGQLDS 172 (206)
T ss_dssp HHHHTCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGG------GCCHHHHHH--HHHCCCCHHHHH
T ss_pred HHHhcCCCceEEEEeEHHHHHHHHHhcCCcccceEEchHHHHHhhcCCccc------cchHHHHHH--HHhcccCCCcce
Confidence 9999999999999999999999987899999998884 6788877543211 368999999 999999885333
Q ss_pred HHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHH
Q 020975 174 VRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMK 214 (319)
Q Consensus 174 ~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~ 214 (319)
..+ +|. |||+++|+.|||.||+++++||+.|.+
T Consensus 173 ~~S-------nW~-~pLs~~Qi~YAA~DA~~~~~i~~~L~~ 205 (206)
T d1vk0a_ 173 IEA-------KWE-KAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHH-------TGG-GSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eec-------CCC-CcCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333 996 899999999999999999999999875
No 4
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}
Probab=99.92 E-value=2.2e-24 Score=183.77 Aligned_cols=178 Identities=21% Similarity=0.213 Sum_probs=140.3
Q ss_pred CeEEeCCcccchHHhhhccccCCCeEEEEeeecCCC-CCCcEEEEEEEeCC-ceEEEEccCCC---------hhhHHHHH
Q 020975 27 PIHIVTNASQLPAEFLEPSSERQLVIGFDCEGVDLC-RHGSLCIMQLAFPD-AIYLVDAIQGG---------ETVVKACK 95 (319)
Q Consensus 27 ~~~~I~t~~~L~~~~l~~~l~~~~~ia~D~E~~~~~-~~g~l~~lqls~~~-~~~~id~~~l~---------~~~~~~L~ 95 (319)
+|.+|+|++++.+ +++. +.+.+.+|||+|+.+++ +.+.++++++++.. ..++++..... ..++..|+
T Consensus 6 ~y~~I~t~~~l~~-~l~~-l~~~~~~a~DtEt~~l~~~~~~i~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 83 (195)
T d1kfsa1 6 NYVTILDEETLKA-WIAK-LEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLK 83 (195)
T ss_dssp TSEECCSHHHHHH-HHHH-HHHSSSEEEEEEESCSCTTTCCEEEEEEEEETTEEEEEECCCCSTTCCCCCCHHHHHHHHH
T ss_pred cceEECCHHHHHH-HHHH-HhcCCeEEEEeeeCCCCccccccccceeeccCCcccccccccccccccccccHHHHHHHHH
Confidence 6899999999998 9987 78889999999999986 78999999999964 44554433211 24678899
Q ss_pred HHHcCCCceEEEeehhhhHHHHHHHcCCcc-ccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHH
Q 020975 96 PALESSYITKVIHDCKRDSEALYFQFGIKL-HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEV 174 (319)
Q Consensus 96 ~lLe~~~i~KV~hd~k~d~~~L~~~~gi~l-~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~ 174 (319)
++|+++.+.|++||+++|+.+|. .+|+.+ +.+||||+|++++++...+ +++..++. ++++.++.+..+.
T Consensus 84 ~~le~~~i~ki~hn~~~d~~~l~-~~~~~~~~~~~Dt~~a~~l~~~~~~~-------~~l~~~~~--~~l~~~~~~~~~~ 153 (195)
T d1kfsa1 84 PLLEDEKALKVGQNLKYDRGILA-NYGIELRGIAFDTMLESYILNSVAGR-------HDMDSLAE--RWLKHKTITFEEI 153 (195)
T ss_dssp HHHTCTTSCEEESSHHHHHHHHH-TTTCCCCCEEEEHHHHHHHHCTTSSC-------CSHHHHHH--HHSSCCCCCHHHH
T ss_pred HHHhcccceeeechHHHHHHHHH-HHhccccCccHHHHHHHHHhcccccc-------cchHHHHH--HHhhcccchHhhh
Confidence 99999999999999999999996 688887 5689999999999986543 57889998 9999887754332
Q ss_pred HHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 020975 175 RVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQ 218 (319)
Q Consensus 175 ~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~ 218 (319)
.. .+++...+...| .+.+..|||.||+++++||+.|.++|++
T Consensus 154 ~~-~~~~~~~~~~i~-~~~~~~YAa~D~~~t~~L~~~l~~~L~k 195 (195)
T d1kfsa1 154 AG-KGKNQLTFNQIA-LEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (195)
T ss_dssp HC-SGGGCCCGGGSC-HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cc-cccCCCChhhCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 10 011112233333 2778899999999999999999999974
No 5
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
Probab=99.89 E-value=5.1e-23 Score=173.10 Aligned_cols=153 Identities=13% Similarity=0.056 Sum_probs=125.9
Q ss_pred CCeEEEEeeecCCC-CCCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCceEEEeehhhhHHHHHHHcCCcccc
Q 020975 49 QLVIGFDCEGVDLC-RHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHN 127 (319)
Q Consensus 49 ~~~ia~D~E~~~~~-~~g~l~~lqls~~~~~~~id~~~l~~~~~~~L~~lLe~~~i~KV~hd~k~d~~~L~~~~gi~l~~ 127 (319)
...++||+|+.+.+ +.++++|+++|+++++|+++..... ....|+++|+|+++.||+||+|+|+++|. ++|+.+.+
T Consensus 16 ~~~~a~~~E~~~~n~~~~~iiGi~i~~~~~~~~i~~~~~~--~~~~l~~~l~~~~~~ki~hn~K~d~~~L~-~~gi~~~~ 92 (171)
T d2hhva1 16 ADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETAL--ADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCG 92 (171)
T ss_dssp CSEEEEEEECCSSSCTTCCCCEEEEEETTEEEEECHHHHT--TCHHHHHHHHCTTSEEEESSHHHHHHHHH-TTTCCCCC
T ss_pred cCCeEEEEEcCCCccccCeEEEEEEEECCCEEEEechhhh--hHHHHHHHHhCccceeeccchHHHHHHHH-HCCCCCcc
Confidence 35689999998876 6889999999998888998654332 13678999999999999999999999995 69999965
Q ss_pred -EEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHH
Q 020975 128 -VVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLP 206 (319)
Q Consensus 128 -vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll 206 (319)
+||||+|+|+++|..++ ++|+.|++ +|++..+.+.+++ ++++ .+...|..+.+..|||.||.+++
T Consensus 93 ~~fDt~laayll~p~~~~-------~~L~~la~--~yl~~~~~~~e~~---~gkg--~k~~~~~~~~~~~yaa~da~~~~ 158 (171)
T d2hhva1 93 VSFDLLLAAYLLDPAQGV-------DDVAAAAK--MKQYEAVRPDEAV---YGKG--AKRAVPDEPVLAEHLVRKAAAIW 158 (171)
T ss_dssp EEEEHHHHHHHHCGGGCC-------CSHHHHHH--TTTCCSSCCHHHH---HCSG--GGCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhcCCccc-------ccHHHHHH--HHcCCCCccceec---cCcc--hhhcCCCHHHHHHHHHHHHHHHH
Confidence 79999999999997654 58999999 9999888754443 2321 23445667888999999999999
Q ss_pred HHHHHHHHHHhh
Q 020975 207 YIYHNMMKKLNQ 218 (319)
Q Consensus 207 ~L~~~L~~~L~~ 218 (319)
+|++.|.++|++
T Consensus 159 ~L~~~l~~~L~e 170 (171)
T d2hhva1 159 ELERPFLDELRR 170 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999976
No 6
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.97 E-value=1.9e-05 Score=63.48 Aligned_cols=137 Identities=20% Similarity=0.100 Sum_probs=77.8
Q ss_pred eEEEEeeecCCC-CCC-cEEEEEEEeCCceEEEE----ccC-----------CC----------hhhHHHHHHHHcCCCc
Q 020975 51 VIGFDCEGVDLC-RHG-SLCIMQLAFPDAIYLVD----AIQ-----------GG----------ETVVKACKPALESSYI 103 (319)
Q Consensus 51 ~ia~D~E~~~~~-~~g-~l~~lqls~~~~~~~id----~~~-----------l~----------~~~~~~L~~lLe~~~i 103 (319)
+|++|+|+++++ ... .++.+++...++..++| +.. +. .++...+..++++.
T Consensus 2 ~v~iD~EttGl~~~~~~ii~~~~iv~~~g~~i~~~~v~p~~~i~~~~~~i~GIt~e~~~~~~~~~~~~~~~~~~~~~~-- 79 (173)
T d1wlja_ 2 VVAMDCEMVGLGPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLLKGK-- 79 (173)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHHTTS--
T ss_pred EEEEEEEcCCCCCCCCcEEEEEEEEEecCeEEEEEeeecccccCcceeEEecCcchhhhcCCcHHHHHHHHHhhcccc--
Confidence 689999999885 333 34445554432222232 211 00 12445677777654
Q ss_pred eEEEeehhhhHHHHHHHcCCcc---ccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcC
Q 020975 104 TKVIHDCKRDSEALYFQFGIKL---HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQ 180 (319)
Q Consensus 104 ~KV~hd~k~d~~~L~~~~gi~l---~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~ 180 (319)
..|+||+++|+.+|. ...-.. ....|++..+....+.. +.++|+.|++ .|++..+....
T Consensus 80 ~lv~hn~~fD~~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~L~~L~~--~~~~~~i~~~~-------- 141 (173)
T d1wlja_ 80 LVVGHDLKHDFQALK-EDMSGYTIYDTSTDRLLWREAKLDHC-------RRVSLRVLSE--RLLHKSIQNSL-------- 141 (173)
T ss_dssp EEEESSHHHHHHHTT-CCCTTCEEEEGGGCHHHHHHHTC------------CCHHHHHH--HHTCCCCSCCT--------
T ss_pred eEEeechHhHHHHHH-HhhccCcccchhHHHHHHHHHhhccc-------CCcCHHHHHH--HHhCCcccCCC--------
Confidence 459999999999994 322221 12346666554443322 1368899998 88887654210
Q ss_pred CCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhc
Q 020975 181 DPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQS 220 (319)
Q Consensus 181 ~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~ 220 (319)
..++ |..||.++.+|+..+.+.-.+.|
T Consensus 142 ~~H~-------------Al~Da~at~~l~~~~~~~~~~~g 168 (173)
T d1wlja_ 142 LGHS-------------SVEDARATMELYQISQRIRARRG 168 (173)
T ss_dssp TCCC-------------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCC-------------hHHHHHHHHHHHHHHHHHHhhcC
Confidence 0111 78899999999977664333333
No 7
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}
Probab=97.83 E-value=2.1e-05 Score=65.07 Aligned_cols=160 Identities=16% Similarity=0.036 Sum_probs=89.0
Q ss_pred eEEEEeeecCCC-CCCcEEEEEEEe-C-CceEEEEccCCChhhHHHHHHHHcCCCceEEEee-hhhhHHHHHHHcCCc--
Q 020975 51 VIGFDCEGVDLC-RHGSLCIMQLAF-P-DAIYLVDAIQGGETVVKACKPALESSYITKVIHD-CKRDSEALYFQFGIK-- 124 (319)
Q Consensus 51 ~ia~D~E~~~~~-~~g~l~~lqls~-~-~~~~~id~~~l~~~~~~~L~~lLe~~~i~KV~hd-~k~d~~~L~~~~gi~-- 124 (319)
.++||+||+++. ...++..|++-. . ++.+.++.... ...+..+..++.++++ .|||| ..+|+-+|.+.++..
T Consensus 1 il~~DIET~gl~~~~~~I~ci~~~d~~~~~~~~~~~~~~-~~~l~~~~~~l~~~D~-ivghN~~~FD~P~L~~~~~~~~~ 78 (204)
T d1x9ma1 1 MIVSDIEANALLESVTKFHCGVIYDYSTAEYVSYRPSDF-GAYLDALEAEVARGGL-IVFHNGHKYDVPALTKLAKLQLN 78 (204)
T ss_dssp CEEEEEEESSCGGGCCCEEEEEEEETTTTEEEEECGGGH-HHHHHHHHHHHHTTCC-EEESSTTTTHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCCCCCCCEEEEEEEEECCCCeEEEEeCCCc-hhHHHHHHHHHhcCCE-EEEEccccccHHHHHHHHHHhcc
Confidence 378999999885 345664444443 2 45555533211 2346677778889887 49999 569998886443321
Q ss_pred ------cccEEechhHHhhhhhhcCCCCC--CC---CcccHHhhhcCCcccCCc-cchhHHH---HHHhc---CCCCCCc
Q 020975 125 ------LHNVVDTQIAYSLIEEQEGRKRS--PD---DYISFVGLLADPRYCGIS-YQEKEEV---RVLLR---QDPQFWT 186 (319)
Q Consensus 125 ------l~~vfDt~lAayLL~~~~~~~~L--~~---~~~sL~~L~~~~~~lg~~-l~~k~~~---~~~~~---~~~~~w~ 186 (319)
.....|+.+.+.+..+....... .. ..++|..... + ||.. .+-.+.. ..... .....|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~-L~~~k~~~~~~~~~~~~~~~~~~~~~~~w~ 155 (204)
T d1x9ma1 79 REFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGY--R-LGEMKGEYKDDFKRMLEEQGEEYVDGMEWW 155 (204)
T ss_dssp CCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHH--H-HHHHHHHHHHHHHHHHHHTTCCCCTTGGGT
T ss_pred CCcCcCcchhhhhhhhhhhccccchhhhhccccccccchhhhhhhc--c-cCchhhhhccchhhccccchhhhhhhhhhh
Confidence 13588999999887664221100 00 0112222111 1 1110 0000000 00000 1112454
Q ss_pred cCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 020975 187 YRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (319)
Q Consensus 187 ~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (319)
.. .++++.||..||..+.+||+.|..++.
T Consensus 156 ~~--~~em~~Yc~qDV~lt~~L~~~l~~~~~ 184 (204)
T d1x9ma1 156 NF--NEEMMDYNVQDVVVTKALLEKLLSDKH 184 (204)
T ss_dssp SC--CHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred hh--hHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33 378999999999999999999887654
No 8
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.20 E-value=0.018 Score=47.43 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=60.4
Q ss_pred HHHHHHcC--CCceEEEeeh-hhhHHHHHH---HcCCcc--c--cEEechhHHhhhhhhcCCCC-CCCCcccHHhhhcCC
Q 020975 93 ACKPALES--SYITKVIHDC-KRDSEALYF---QFGIKL--H--NVVDTQIAYSLIEEQEGRKR-SPDDYISFVGLLADP 161 (319)
Q Consensus 93 ~L~~lLe~--~~i~KV~hd~-k~d~~~L~~---~~gi~l--~--~vfDt~lAayLL~~~~~~~~-L~~~~~sL~~L~~~~ 161 (319)
.++.+++. ....-|+||+ ++|..+|.+ ++|+.. . ..+||+..+..+.+...... -....++|.+|++
T Consensus 99 ~~~~f~~~~~~~~~lVahN~~~FD~~~l~~~~~r~~~~~~~~~~~~iDtl~l~~~~~~~~~~~~~~~~~~~~L~~l~~-- 176 (226)
T d3b6oa1 99 LLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYT-- 176 (226)
T ss_dssp HHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHHTC---------CCCSHHHHHH--
T ss_pred HHHHHHHhccCCceEEEechhHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHHHHhcccccccccccccCcchHHHHH--
Confidence 34445543 4566799996 899998853 345543 2 26899987765544211100 0012467899988
Q ss_pred cccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 020975 162 RYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (319)
Q Consensus 162 ~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (319)
+++|.+... .++ |-.||..+.+++..+.+++.
T Consensus 177 ~~~g~~~~~-----------aH~-------------Al~D~~~~~~l~~~~~~~l~ 208 (226)
T d3b6oa1 177 RLYWQAPTD-----------SHT-------------AEGDVLTLLSICQWKPQALL 208 (226)
T ss_dssp HHHSSCCSS-----------TTS-------------HHHHHHHHHHHHTSSHHHHH
T ss_pred HHcCCCCCC-----------CcC-------------hHHHHHHHHHHHHHHHHHHH
Confidence 777765321 011 77899999999888776664
No 9
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}
Probab=94.65 E-value=0.52 Score=41.01 Aligned_cols=148 Identities=12% Similarity=0.128 Sum_probs=83.5
Q ss_pred CeEEEEeeecCCC--C--CCcEEEEEEEeCCceEEEEccCCC----------hhhHHHHHHHHc--CCCceEEEeeh-hh
Q 020975 50 LVIGFDCEGVDLC--R--HGSLCIMQLAFPDAIYLVDAIQGG----------ETVVKACKPALE--SSYITKVIHDC-KR 112 (319)
Q Consensus 50 ~~ia~D~E~~~~~--~--~g~l~~lqls~~~~~~~id~~~l~----------~~~~~~L~~lLe--~~~i~KV~hd~-k~ 112 (319)
..++||.|+.+.. . .+.+..|++.......++-..... .+.+..+..++. ||++ .+|||. .+
T Consensus 136 r~~s~DIE~~~~~g~~~~~~~I~~Is~~~~~~~~~~~~~~~~~~~v~~~~~E~~lL~~f~~~i~~~dPDi-i~g~N~~~F 214 (347)
T d1tgoa1 136 KMLAFDIETLYHEGEEFAEGPILMISYADEEGARVITWKNIDLPYVDVVSTEKEMIKRFLKVVKEKDPDV-LITYNGDNF 214 (347)
T ss_dssp CEEEEEEEECCCSSSSTTCSCEEEEEEEETTEEEEEESSCCCCTTEEECSSHHHHHHHHHHHHHHHCCSE-EEESSGGGT
T ss_pred eEEEEEEEeccCCCCCcccCcEEEEEEecCCCcEEEEecCccCccceeeCCHHHHHHHHHHHHhhcCccc-eeeccccCC
Confidence 5789999986442 2 334433433334433333221111 133455545444 6776 489998 67
Q ss_pred hHHHHHH---HcCCcc------------------------ccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccC
Q 020975 113 DSEALYF---QFGIKL------------------------HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCG 165 (319)
Q Consensus 113 d~~~L~~---~~gi~l------------------------~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg 165 (319)
|+-.|.+ .+|+.. ...+|++.... .. +.+ ..++|+++++ .+||
T Consensus 215 D~pyL~~R~~~~~i~~~~~r~~~~~~~~~~~~~~~~~i~Gr~~~D~~~~~~---~~---~~l--~sy~L~~va~--~~l~ 284 (347)
T d1tgoa1 215 DFAYLKKRSEKLGVKFILGREGSEPKIQRMGDRFAVEVKGRIHFDLYPVIR---RT---INL--PTYTLEAVYE--AIFG 284 (347)
T ss_dssp HHHHHHHHHHHTTCCCCCSTTSCCCEEEECSSSEEEECTTSEEEEHHHHHH---HH---CCC--SCCCHHHHHH--HHHS
T ss_pred chHHHHHHHHHhCCCCccccccCccceeccCceeEEecCCeEEeeHHHHHH---Hh---ccc--ccccHHHHHH--HhcC
Confidence 9987753 456542 12678765432 11 122 2478999999 8888
Q ss_pred Cccch--hHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHH
Q 020975 166 ISYQE--KEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKK 215 (319)
Q Consensus 166 ~~l~~--k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~ 215 (319)
..-.+ .+.+.. -|....-....+.|+..||..+++|+..|...
T Consensus 285 ~~K~~~~~~~i~~-------~~~~~~~~~~~~~Y~~~D~~l~~~L~~kl~~~ 329 (347)
T d1tgoa1 285 QPKEKVYAEEIAQ-------AWETGEGLERVARYSMEDAKVTYELGKEFFPM 329 (347)
T ss_dssp SCCCCCCHHHHHH-------HHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHH-------HHHCccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322 222221 12211112678999999999999998876433
No 10
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.65 E-value=0.19 Score=40.94 Aligned_cols=91 Identities=22% Similarity=0.213 Sum_probs=55.3
Q ss_pred CCceEEEeeh-hhhHHHHHH---HcCCcc---ccEEechhHHhhhhhhcCCCCC--CCCcccHHhhhcCCcccCCccchh
Q 020975 101 SYITKVIHDC-KRDSEALYF---QFGIKL---HNVVDTQIAYSLIEEQEGRKRS--PDDYISFVGLLADPRYCGISYQEK 171 (319)
Q Consensus 101 ~~i~KV~hd~-k~d~~~L~~---~~gi~l---~~vfDt~lAayLL~~~~~~~~L--~~~~~sL~~L~~~~~~lg~~l~~k 171 (319)
....-|+||. .+|...|.+ ++|+.. ...+||+-.+..+.+....... ....++|+++++ +|++.....
T Consensus 110 ~~~~~v~~n~~~fD~~~l~~~l~r~~~~~~~~~~~iDtl~~~r~l~~~~~~~~~~~~~~~~~L~~l~~--~~~~~~~~~- 186 (228)
T d1y97a1 110 GPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFH--RYFRAEPSA- 186 (228)
T ss_dssp SSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHHHHC----------CCSHHHHHH--HHHSSCCC--
T ss_pred CCceEEeechHHHhHHHHHHHHHHcCCCCCCCcchhhHHHHHHHhhhhcccccccCcCCCcCHHHHHH--HhcCCCCCC-
Confidence 4456689985 799877743 357665 2368998877665543211100 112367888888 776654321
Q ss_pred HHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 020975 172 EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLN 217 (319)
Q Consensus 172 ~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~ 217 (319)
..-|-.||.++.+|+..+..++.
T Consensus 187 -----------------------aH~Al~Da~at~~l~~~~~~~l~ 209 (228)
T d1y97a1 187 -----------------------AHSAEGDVHTLLLIFLHRAAELL 209 (228)
T ss_dssp -------------------------CHHHHHHHHHHHHHHTHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 11277899999999888776654
No 11
>d1qtma1 c.55.3.5 (A:293-422) Exonuclease domain of prokaryotic DNA polymerase {Thermus aquaticus [TaxId: 271]}
Probab=94.10 E-value=0.17 Score=36.74 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=76.3
Q ss_pred CeEEEEeeecCCCCCCcEEEEEEEeCCceEEEEccCCChhhHHHHHHHHcCCCceEEEeehhhhHHHHHHHcCCccccEE
Q 020975 50 LVIGFDCEGVDLCRHGSLCIMQLAFPDAIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALYFQFGIKLHNVV 129 (319)
Q Consensus 50 ~~ia~D~E~~~~~~~g~l~~lqls~~~~~~~id~~~l~~~~~~~L~~lLe~~~i~KV~hd~k~d~~~L~~~~gi~l~~vf 129 (319)
..++|-... ..++..++..+.-+.++++|-- +.-++.|+.+=+-..+ +..|+.+|.-+-|+.+....
T Consensus 13 af~g~~lsr-~epmwa~l~~laaa~~grv~r~------~~~l~~l~~l~e~r~l------lakdlavlalreG~~v~PgD 79 (130)
T d1qtma1 13 AFVGFVLSR-KEPMWADLLALAAARGGRVHRA------PEPYKALRDLKEARGL------LAKDLSVLALREGLGLPPGD 79 (130)
T ss_dssp CEEEEEESS-SCTTTCCEEEEEEEETTEEEEC------SSHHHHHTTCSCBCST------THHHHHHHHHHTTCCCCBCC
T ss_pred ceeeeeecC-CcchHHHHHHHHHHhcCceecC------CCcHHHHhchHHHHHH------HHHHHHHHHhcccccCCCCC
Confidence 345554421 2246778777777777776531 2235555544332222 45788887656788887778
Q ss_pred echhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHH
Q 020975 130 DTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIY 209 (319)
Q Consensus 130 Dt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~ 209 (319)
|-|+.+||++|.++ .....+. +| |. .|... |++.|.+..+|+
T Consensus 80 DPmLlAYLlDPsNT---------~p~~var--RY-gg-----------------ew~eD---------a~~RA~~~~rL~ 121 (130)
T d1qtma1 80 DPMLLAYLLDPSNT---------TPEGVAR--RY-GG-----------------EWTEE---------AGERAALSERLF 121 (130)
T ss_dssp CHHHHHHHHCTTCC---------SHHHHHH--HH-TC-----------------CCCSC---------HHHHHHHHHHHH
T ss_pred chhHHHHhcCcCCC---------CcchhhH--hc-CC-----------------CCCcc---------HHHHHHHHHHHH
Confidence 99999999999653 3566676 66 31 45321 778889999999
Q ss_pred HHHHHHHh
Q 020975 210 HNMMKKLN 217 (319)
Q Consensus 210 ~~L~~~L~ 217 (319)
+.|..+|.
T Consensus 122 ~~L~~rl~ 129 (130)
T d1qtma1 122 ANLWGRLE 129 (130)
T ss_dssp HHHHHHTT
T ss_pred HHHHHhhc
Confidence 99988875
No 12
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}
Probab=93.13 E-value=0.81 Score=34.68 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=55.2
Q ss_pred hHHHHHHHHcCCCceEEEeehhhhHHHHHH---HcCCcc------ccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcC
Q 020975 90 VVKACKPALESSYITKVIHDCKRDSEALYF---QFGIKL------HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLAD 160 (319)
Q Consensus 90 ~~~~L~~lLe~~~i~KV~hd~k~d~~~L~~---~~gi~l------~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~ 160 (319)
++..+..++.+.. .|+||..+|...+.. .++... ....|++..+..+.+.. ..+|..++.
T Consensus 76 ~~~~~~~~~~~~~--~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--------~~~L~~l~~- 144 (174)
T d2guia1 76 VADEFMDYIRGAE--LVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK--------RNSLDALCA- 144 (174)
T ss_dssp HHHHHHHHHTTSE--EEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS--------CCSHHHHHH-
T ss_pred HHHHHHHhcCCCe--EEEeecchhhHHHHHHHHHhCCCCCCcccccchhhHHHHHHHHcCCC--------CCCHHHHHH-
Confidence 3456777787654 589999999877642 234332 23578888776655432 257888886
Q ss_pred CcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHH
Q 020975 161 PRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNM 212 (319)
Q Consensus 161 ~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L 212 (319)
.+|+.... ...++ |..||.++.++|-.|
T Consensus 145 --~~~~~~~~---------~~~H~-------------Al~Da~~ta~v~~~l 172 (174)
T d2guia1 145 --RYEIDNSK---------RTLHG-------------ALLDAQILAEVYLAM 172 (174)
T ss_dssp --HTTCCCTT---------CSSCC-------------HHHHHHHHHHHHHHH
T ss_pred --HcCCCCCC---------CCCcC-------------HHHHHHHHHHHHHHH
Confidence 44544321 00112 778999999988776
No 13
>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment) {Thermus aquaticus [TaxId: 271]}
Probab=92.05 E-value=0.001 Score=60.73 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=50.5
Q ss_pred hchHHHHHhhccc-cccc-ccCCCc-cCCCCCCCCCCCcccccCccChHHHHHhhcc
Q 020975 219 QSLWYLAVRGALY-CRCF-CINEND-YVDWPPLPPVPDYLIVEGDVPEEEILSILDV 272 (319)
Q Consensus 219 ~~~~~l~~~~e~~-~~vl-~me~~g-~~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~ 272 (319)
++++.+|.++||| .+|| .||.+| .+|.+.+.++..++..++..+++++++++|.
T Consensus 2 ~~l~~~y~~lE~~l~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~~g~ 58 (409)
T d1qtma2 2 ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGH 58 (409)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHhCeEeCHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5789999999998 8888 999999 9999999999999999999999999999994
No 14
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.71 E-value=0.0061 Score=45.39 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCcccccCccChHHHHHhhccCCCCcc----------hhhccccchHHHHHHhcchh
Q 020975 243 VDWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESCNAE 298 (319)
Q Consensus 243 ~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 298 (319)
..||+..|+..+.++..+..++.|+++|..+|.+.. ..++++|.+|+++++.|...
T Consensus 32 ~~wRe~~Ar~~d~p~~~Vl~d~~L~~iA~~~P~~~~~L~~~~~~~~~~~r~~g~~il~~I~~a~~~ 97 (113)
T d2cpra1 32 FAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREM 97 (113)
T ss_dssp HHHHHHHHHHTTCCHHHHCCHHHHHHHHHHCCSSSHHHHHTSSSCCTTTTTTHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCcceeeCHHHHHHHHHhCCCCHHHHHhhhCCChHHhhhhHHHHHHHHHHHHhC
Confidence 356666777788888999999999999999995443 57889999999999999644
No 15
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}
Probab=91.00 E-value=2.4 Score=32.46 Aligned_cols=88 Identities=15% Similarity=0.192 Sum_probs=57.1
Q ss_pred ceEEEeehhhhHHHHHH---HcCCccc--cEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCCcccCCccchhHHHHHH
Q 020975 103 ITKVIHDCKRDSEALYF---QFGIKLH--NVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADPRYCGISYQEKEEVRVL 177 (319)
Q Consensus 103 i~KV~hd~k~d~~~L~~---~~gi~l~--~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~ 177 (319)
...++|+..+|...+.. .++.... ..+|+.....+....... .+|..+++ ++|++.+..
T Consensus 109 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~L~~~~~---~~gi~~~~~------ 172 (202)
T d2f96a1 109 AILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQ-------TVLAKACQ---AAGMEFDNR------ 172 (202)
T ss_dssp EEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHSC-------CSHHHHHH---HTTCCCCTT------
T ss_pred cceeeeehhhhHHHHHHHHHHhCCCcCCCcccchhhhhhhhhcccCC-------cCHHHHHH---HcCCCCCCC------
Confidence 35578888888877642 3444432 356777665555443222 46888885 667665421
Q ss_pred hcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhchH
Q 020975 178 LRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLW 222 (319)
Q Consensus 178 ~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~~ 222 (319)
..++ |-.||.++.+|+..|.+++++.|-|
T Consensus 173 ---~aH~-------------Al~Da~~ta~i~~~l~~~~~~~~~~ 201 (202)
T d2f96a1 173 ---EAHS-------------ARYDTEKTAELFCGIVNRWKEMGGW 201 (202)
T ss_dssp ---SCCC-------------HHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ---CCCC-------------hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0111 6789999999999999999998854
No 16
>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment) {Escherichia coli [TaxId: 562]}
Probab=90.19 E-value=0.0021 Score=58.85 Aligned_cols=58 Identities=12% Similarity=-0.021 Sum_probs=52.1
Q ss_pred hchHHHHHhhccc-cccc-ccCCCc-cCCCCCCCCCCCcccccCccChHHHHHhhcc--CCCC
Q 020975 219 QSLWYLAVRGALY-CRCF-CINEND-YVDWPPLPPVPDYLIVEGDVPEEEILSILDV--PPGK 276 (319)
Q Consensus 219 ~~~~~l~~~~e~~-~~vl-~me~~g-~~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~--~~~~ 276 (319)
+|++++|.++||+ .+++ .||.+| .+|.+.+..+...+..++..+++++++++|. .|++
T Consensus 2 ~g~~~~~~~iE~~~~~~la~Me~~Gi~vD~e~l~~~~~~~~~~~~~l~~~~~~~~g~~fn~~S 64 (410)
T d1kfsa2 2 KGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSS 64 (410)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHCBCBCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCSCT
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhCEEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCC
Confidence 5889999999998 8889 999999 9999999999999999999999999999984 4543
No 17
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=88.15 E-value=0.013 Score=42.53 Aligned_cols=54 Identities=30% Similarity=0.401 Sum_probs=44.0
Q ss_pred CCCCCCCCCCcccccCccChHHHHHhhccCCCCcc---------hhhccccchHHHHHHhcch
Q 020975 244 DWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKMG---------RIIGRRGSSILAIKESCNA 297 (319)
Q Consensus 244 d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 297 (319)
.||+..|+..+.++..+..++.|.++|...|.+.. +.++++|.+|+++++.+.+
T Consensus 29 ~WRe~~A~~~d~p~~~Vl~d~~L~~la~~~P~~~~eL~~i~~~~~~~~~~g~~il~~i~~a~~ 91 (101)
T d1yt3a1 29 DWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVEKAQT 91 (101)
T ss_dssp HHHHHHHHHHTCCGGGTSCHHHHHHHHHHCCCSHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcceeECHHHHHHHHHHCCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHh
Confidence 56666677778888889999999999998885432 5678999999999998853
No 18
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=86.77 E-value=0.012 Score=42.21 Aligned_cols=55 Identities=9% Similarity=0.147 Sum_probs=43.6
Q ss_pred CCCCCCCCCCcccccCccChHHHHHhhccCCCCc----------chhhccccchHHHHHHhcchh
Q 020975 244 DWPPLPPVPDYLIVEGDVPEEEILSILDVPPGKM----------GRIIGRRGSSILAIKESCNAE 298 (319)
Q Consensus 244 d~~~l~a~~~~l~~~~~~~~~~i~~~ag~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 298 (319)
.||...|+..+.++..+..++.+.++|..+|.+. ...++++|.+|+.+++.+-..
T Consensus 27 ~wR~~~Ar~~d~~~~~Vl~d~~L~~iA~~~P~~~~eL~~i~g~~~~~~~~~g~eil~~I~~a~~~ 91 (96)
T d2hbka1 27 QWRDLIARRDDESPRFVMPNQLLAALVAYTPTDVIGVVSLTNGVTEHVRQNAKLLANLIRDALRN 91 (96)
T ss_dssp HHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCCSHHHHHTCTTCCCHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceeeeCHHHHHHHHHHCCCCHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666667778888999999999999999544 367789999999999987543
No 19
>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
Probab=81.65 E-value=0.012 Score=53.40 Aligned_cols=55 Identities=15% Similarity=-0.035 Sum_probs=48.8
Q ss_pred HHHHHhhccc-cccc-ccCCCc-cCCCCCCCCCCCcccccCccChHHHHHhhcc--CCCC
Q 020975 222 WYLAVRGALY-CRCF-CINEND-YVDWPPLPPVPDYLIVEGDVPEEEILSILDV--PPGK 276 (319)
Q Consensus 222 ~~l~~~~e~~-~~vl-~me~~g-~~d~~~l~a~~~~l~~~~~~~~~~i~~~ag~--~~~~ 276 (319)
..+|.++||+ .++| .||.+| .+|.+.+..+..++..++..++++|++++|. .|++
T Consensus 3 e~ll~~lE~~l~~vLa~ME~~Gi~vD~e~l~~~~~~l~~~~~~le~~i~~~~G~~fN~~S 62 (408)
T d2hhva2 3 DRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINS 62 (408)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHhCeEECHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCC
Confidence 4578999998 8888 999999 9999999999999999999999999999994 4544
No 20
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}
Probab=72.88 E-value=23 Score=30.46 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=56.8
Q ss_pred hHHHHHHHHc--CCCceEEEeeh-hhhHHHHHHH---cCCcc-------------------------c--cEEechhHHh
Q 020975 90 VVKACKPALE--SSYITKVIHDC-KRDSEALYFQ---FGIKL-------------------------H--NVVDTQIAYS 136 (319)
Q Consensus 90 ~~~~L~~lLe--~~~i~KV~hd~-k~d~~~L~~~---~gi~l-------------------------~--~vfDt~lAay 136 (319)
.+..+..++. ||+|. +|||. .+|+..|.++ +|+.+ . .++|.+-...
T Consensus 203 LL~~F~~~i~~~dPDii-~GyNi~~FDlpyL~~Ra~~~~i~~~lgr~~~~~~~~~~~~~~~~~~~~i~Gr~~lD~~~~~k 281 (388)
T d1q8ia1 203 LLEKLNAWFANYDPDVI-IGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALK 281 (388)
T ss_dssp HHHHHHHHHHHHCCSEE-EESSTTTTHHHHHHHHHHHTTCCCCCSSSSCCCEEEEECSSSCEEEEEBTTBEEEEHHHHHH
T ss_pred HHHHHHHHHHHcCCCEE-EecCCCCCCHHHHHHHHHHhCCCchhhhcCCcceeEEccccccceeeecceEEEeehhHHHH
Confidence 4555555555 78875 89997 5798887643 34321 1 1456543321
Q ss_pred hhhhhcCCCCCCCCcccHHhhhcCCcccCCccc-h--h---HHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHH
Q 020975 137 LIEEQEGRKRSPDDYISFVGLLADPRYCGISYQ-E--K---EEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYH 210 (319)
Q Consensus 137 LL~~~~~~~~L~~~~~sL~~L~~~~~~lg~~l~-~--k---~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~ 210 (319)
... ..+ ..++|+.+++ .+||..-. . . .+... .|... ....++|+..|+..+..|..
T Consensus 282 ---~~~--~~~--~sy~L~~Va~--~~Lg~~K~~~~~~~~~~~~~~-------~~~~d--~~~l~~Y~~~D~~Lv~~L~~ 343 (388)
T d1q8ia1 282 ---SAF--WNF--SSFSLETVAQ--ELLGEGKSIDNPWDRMDEIDR-------RFAED--KPALATYNLKDCELVTQIFH 343 (388)
T ss_dssp ---HSC--CCC--SCCCHHHHHH--TTC------------CTHHHH-------HHHHC--HHHHHHHHHHHHHHHHHHHH
T ss_pred ---hhh--ccc--cccCHhHhhh--hhhcccccccChhhhHHHHHh-------cChhh--HHHHHHHHHHHHHHHHHHHH
Confidence 110 111 2478999999 88874311 0 0 01000 12111 15678999999999999977
Q ss_pred HH
Q 020975 211 NM 212 (319)
Q Consensus 211 ~L 212 (319)
.+
T Consensus 344 k~ 345 (388)
T d1q8ia1 344 KT 345 (388)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 21
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}
Probab=70.63 E-value=18 Score=31.70 Aligned_cols=105 Identities=10% Similarity=-0.095 Sum_probs=59.4
Q ss_pred HHHHHHHcCCCceEEEee-hhhhHHHHHHH---cCCcc--------ccEEechhHHhhhhhhcCC-----CCC-CCCccc
Q 020975 92 KACKPALESSYITKVIHD-CKRDSEALYFQ---FGIKL--------HNVVDTQIAYSLIEEQEGR-----KRS-PDDYIS 153 (319)
Q Consensus 92 ~~L~~lLe~~~i~KV~hd-~k~d~~~L~~~---~gi~l--------~~vfDt~lAayLL~~~~~~-----~~L-~~~~~s 153 (319)
..+..+|+.+....|+|| ..+|..+|.+. .++.. ...+|+......+..-... ... ....++
T Consensus 79 ~~i~~~~~~~~~~~v~~n~~~FD~~fl~~~~~r~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~k 158 (467)
T d2qxfa1 79 ARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFR 158 (467)
T ss_dssp HHHHHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCC
T ss_pred HHHHHHHhcCCCcEEEEecchhhHHHHHHHHHHhcccchhhcccccccchhhhhhhhhccccCCchhhhhhccccchhhh
Confidence 455667776555567776 69999988642 23321 2368887766544321100 000 012457
Q ss_pred HHhhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhhchHHHH
Q 020975 154 FVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQSLWYLA 225 (319)
Q Consensus 154 L~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~~~~~l~ 225 (319)
|+.++. .+|+.... . ++ |-.||.++..|+..+..+... +|+-+
T Consensus 159 L~~la~---~~gi~~~~--a---------H~-------------Al~D~~~t~~l~~~i~~~~~~--~~~~~ 201 (467)
T d2qxfa1 159 LEHLTK---ANGIEHSN--A---------HD-------------AMADVYATIAMAKLVKTRQPR--LFDYL 201 (467)
T ss_dssp HHHHHH---HTTCCCC--------------C-------------TTHHHHHHHHHHHHHHHHSHH--HHHHH
T ss_pred HHHHHH---HhCCCccc--c---------cc-------------ccCCHHHHHHHHHHhhhhhHH--HHHHH
Confidence 788875 44543321 0 11 668999999999888776643 44444
No 22
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
Probab=59.00 E-value=0.16 Score=34.47 Aligned_cols=45 Identities=11% Similarity=0.114 Sum_probs=33.0
Q ss_pred CCCcccccCccChHHHHHhhccCCCCcc----------hhhccccchHHHHHHhc
Q 020975 251 VPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKESC 295 (319)
Q Consensus 251 ~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~~~~~~~~~~~~~~~ 295 (319)
...+.++..+..+..+.++|...|.+.+ .-+++.|.+|+.+++..
T Consensus 19 ~~~~ip~~~I~~d~~L~~ia~~~P~s~~~L~~I~G~g~~k~~~yG~~il~~i~~~ 73 (77)
T d1wuda1 19 DESNVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAH 73 (77)
T ss_dssp HHHTSCHHHHCCHHHHHHHHHHCCCSHHHHHTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcceeeCHHHHHHHHHHCCCCHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3345555667778888888888885443 56789999999998864
No 23
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.94 E-value=2.4 Score=27.65 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=31.4
Q ss_pred cCCCCcchhhccccchHHHHHHhcchhhhccCCCCCCChh
Q 020975 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311 (319)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (319)
+++...+.++++.|++|..|-+.+.+.+.|-.+..+++.|
T Consensus 11 V~~~~~~~iIG~~G~~i~~I~~~tg~~I~i~~~~~~~~~v 50 (71)
T d1viga_ 11 IDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLI 50 (71)
T ss_dssp ECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEE
T ss_pred ECHHHhcccCCCCCchHHHHHHHhCCEEEeCCCCCCCCEE
Confidence 4566678899999999999999999998886544444434
No 24
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Probab=43.78 E-value=92 Score=26.48 Aligned_cols=109 Identities=11% Similarity=0.061 Sum_probs=60.9
Q ss_pred hhHHHHHHHHcCCCceEEEeeh-hhhHHHHHHH---cCCccc-----------------cEEechhHH--hhhhhhcCCC
Q 020975 89 TVVKACKPALESSYITKVIHDC-KRDSEALYFQ---FGIKLH-----------------NVVDTQIAY--SLIEEQEGRK 145 (319)
Q Consensus 89 ~~~~~L~~lLe~~~i~KV~hd~-k~d~~~L~~~---~gi~l~-----------------~vfDt~lAa--yLL~~~~~~~ 145 (319)
+.+..+..++.+|++ .+|||. .+|+-.|..+ +|+... .-+|+.--. .+...-....
T Consensus 255 eLL~~F~~~i~dpDi-i~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~ 333 (410)
T d1s5ja1 255 ELLGRFFDILLEYPI-VLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEG 333 (410)
T ss_dssp HHHHHHHHHHTTCSE-EEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHHHHTSTT
T ss_pred HHHHHHHhhhcccce-EEEecccCCcHHHHHHHHHHhCCccccccccccCccceeEecceEEEecceeeehHHHHHhhcc
Confidence 355666777889987 489997 4699877543 344210 012221100 0111111112
Q ss_pred CCCCCcccHHhhhcCCcccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHH
Q 020975 146 RSPDDYISFVGLLADPRYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMM 213 (319)
Q Consensus 146 ~L~~~~~sL~~L~~~~~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~ 213 (319)
.+ ..++|+.+++ .+||..-. +.. . .|..-. ....+.|+..||..+++|...+.
T Consensus 334 ~l--~sy~Ld~Va~--~~Lg~~K~---d~~----~---~~~~~~-~~~l~~Y~~~D~~L~~~L~~~~~ 386 (410)
T d1s5ja1 334 KY--NEYNLDAVAK--ALLGTSKV---KVD----T---LISFLD-VEKLIEYNFRDAEITLQLTTFNN 386 (410)
T ss_dssp CC--SSCSHHHHHH--HHHCCCCC-----S----S---CTTTCC-HHHHHHHHHHHHHHHHHTTTHHH
T ss_pred CC--CCCCHHHHHH--HHhCcCcc---cCC----C---ccccCC-HHHHHHhhHHHHHHHHHHHhhhh
Confidence 22 3578999998 89885321 111 1 111111 25789999999999999976554
No 25
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.12 E-value=6.2 Score=26.13 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=31.6
Q ss_pred cCCCCcchhhccccchHHHHHHhcchhhhccCCCCCCChh
Q 020975 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKV 311 (319)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (319)
+++...+.+|++.|.+|..|-+.+++-+.|--...+++-|
T Consensus 16 Ip~~~~~~iIG~~G~~i~~I~~~tg~~I~~p~~~~~~~~v 55 (81)
T d2ctea1 16 IPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQI 55 (81)
T ss_dssp CCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEE
T ss_pred ECHHHHhhccCCCChhHHHHHHHhCCEEEECCCCCCCCEE
Confidence 4556778999999999999999999999885554444443
No 26
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.80 E-value=4.3 Score=26.21 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=26.3
Q ss_pred CCcchhhccccchHHHHHHhcchhhhccCCC
Q 020975 275 GKMGRIIGRRGSSILAIKESCNAEILIGGAK 305 (319)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (319)
...+.+|++.|.+|..|-+.+.+.+.|..+.
T Consensus 11 ~~vg~iIGk~G~~I~~I~~~tga~I~i~~~~ 41 (70)
T d1wvna1 11 NLIGCIIGRQGANINEIRQMSGAQIKIANPV 41 (70)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHCCEEEECCCC
T ss_pred HhcceeECCCChHHHHHHHHcCcEEEEcCCC
Confidence 4567899999999999999999999985443
No 27
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.62 E-value=3.9 Score=27.90 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=32.5
Q ss_pred cCCCCcchhhccccchHHHHHHhcchhhhccCCCCCCChhh
Q 020975 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIGGAKGPPDKVS 312 (319)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
+++...+.+|++.|.+|..|.+.++..+.|..+..+++.|.
T Consensus 16 Vp~~~~~~iIG~~G~~i~~I~~~tg~~I~~p~~~~~~~~v~ 56 (91)
T d2ctka1 16 VPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIA 56 (91)
T ss_dssp CCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEE
T ss_pred ECHHHHhHhcCCCchhHHHHHHHhCCEEEECCCCCCcceEE
Confidence 34445678999999999999999999999976666665554
No 28
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.50 E-value=9.3 Score=25.20 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=30.1
Q ss_pred hccCCCCcchhhccccchHHHHHHhcchhhhccCCC
Q 020975 270 LDVPPGKMGRIIGRRGSSILAIKESCNAEILIGGAK 305 (319)
Q Consensus 270 ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (319)
.-+++...+.+|++.|.+|..|.+.++..+.|.-..
T Consensus 14 i~Vp~~~~~~iIG~~G~~i~~I~~~tg~~I~~p~~~ 49 (81)
T d2ctma1 14 VPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG 49 (81)
T ss_dssp EECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT
T ss_pred EEECHHHHhhccCCCCccHHHHHHHhCCEEEeCCcc
Confidence 346667788999999999999999999999885443
No 29
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.49 E-value=9.7 Score=25.22 Aligned_cols=30 Identities=33% Similarity=0.529 Sum_probs=26.8
Q ss_pred cCCCCcchhhccccchHHHHHHhcchhhhc
Q 020975 272 VPPGKMGRIIGRRGSSILAIKESCNAEILI 301 (319)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (319)
+++...+.+|++.|.+|..|-+.+++.+.|
T Consensus 16 Vp~~~~~~iIG~~G~~i~~I~~~t~~~I~~ 45 (84)
T d2ctla1 16 VDPKYHPKIIGRKGAVITQIRLEHDVNIQF 45 (84)
T ss_dssp CCTTTHHHHSCSSSCHHHHHHHHHTCEEEC
T ss_pred ECHHHHhhhcCCCchhHHHHHHHhCCEEEE
Confidence 555677899999999999999999999888
No 30
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.90 E-value=78 Score=25.29 Aligned_cols=87 Identities=8% Similarity=-0.019 Sum_probs=56.3
Q ss_pred HcCCCceEEEeehhhhHHHHHHHc-CCcc---------------ccEEechhHHhhhhhhcCCCCCCCCcccHHhhhcCC
Q 020975 98 LESSYITKVIHDCKRDSEALYFQF-GIKL---------------HNVVDTQIAYSLIEEQEGRKRSPDDYISFVGLLADP 161 (319)
Q Consensus 98 Le~~~i~KV~hd~k~d~~~L~~~~-gi~l---------------~~vfDt~lAayLL~~~~~~~~L~~~~~sL~~L~~~~ 161 (319)
+-++++.+|+|+.-+|+..|.+.+ |-.+ ..++||-..+.-+.. + .-||.++++
T Consensus 136 ~~~~~~~wv~f~g~yD~~yl~k~l~~~~LP~~~~eF~~~v~~~FP~vyDtK~l~~~~~~------~---~~~L~~la~-- 204 (252)
T d2d5ra1 136 VLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKN------L---KGGLQEVAE-- 204 (252)
T ss_dssp SSSSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTT------C---CSSHHHHHH--
T ss_pred hhcCCCcEEEecchhHHHHHHHHHcCCCCCCCHHHHHHHHHHHCchHhhHHHHHhhccC------C---CchHHHHHH--
Confidence 456889999999999997765432 3211 247888765443322 1 137888886
Q ss_pred cccCCccchhHHHHHHhcCCCCCCccCCCCHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 020975 162 RYCGISYQEKEEVRVLLRQDPQFWTYRPLTELMVRAAADDVRFLPYIYHNMMKKLNQQ 219 (319)
Q Consensus 162 ~~lg~~l~~k~~~~~~~~~~~~~w~~rpL~~~~~~YAa~Da~~ll~L~~~L~~~L~~~ 219 (319)
.|+++-. +. ..-|+.|+..+...+-.+++.+-..
T Consensus 205 -~L~v~~~---------g~--------------~H~AG~DsllT~~~F~~l~~~~~~~ 238 (252)
T d2d5ra1 205 -QLELERI---------GP--------------QHQAGSDSLLTGMAFFKMREMFFED 238 (252)
T ss_dssp -HHTCCCC---------SS--------------TTSHHHHHHHHHHHHHHHHHHTSCS
T ss_pred -HcCCCCC---------CC--------------CcchhHHHHHHHHHHHHHHHHHhcC
Confidence 4454311 00 0128899999999999999888543
No 31
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=24.30 E-value=8.4 Score=24.80 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=25.7
Q ss_pred ccCCCCcchhhccccchHHHHHHhcchhhhcc
Q 020975 271 DVPPGKMGRIIGRRGSSILAIKESCNAEILIG 302 (319)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (319)
..||...+++|+..|+.|..|.+..++.+-|+
T Consensus 6 ~Ip~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~ 37 (69)
T d2je6i3 6 DIMPVKVPRVIGKNKSMYETLTSKSGCSIFVA 37 (69)
T ss_dssp ECCGGGHHHHHCGGGHHHHHHHTTC---CEEC
T ss_pred EEChhhccceECCchhHHHHHHHHHCCEEEEc
Confidence 35778889999999999999999999988885
No 32
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.48 E-value=9.1 Score=25.70 Aligned_cols=32 Identities=31% Similarity=0.719 Sum_probs=28.7
Q ss_pred ccCCCCcchhhccccchHHHHHHhcchhhhcc
Q 020975 271 DVPPGKMGRIIGRRGSSILAIKESCNAEILIG 302 (319)
Q Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (319)
..||...+++|++.|+.|..|.+.+++.+.|+
T Consensus 6 ~Ip~~~ig~IIG~gG~~I~~I~~~tg~~I~i~ 37 (84)
T d2ba0a3 6 AINPARVPRVIGKKGSMIKLLKSELDVQIVVG 37 (84)
T ss_dssp ECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC
T ss_pred EEChhhcceeeCCcHHHHHHHHHHHCCEEEEC
Confidence 46778889999999999999999999988885
No 33
>d2py5a1 c.55.3.5 (A:5-187) Exonuclease domain of phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]}
Probab=21.75 E-value=68 Score=24.47 Aligned_cols=63 Identities=8% Similarity=-0.001 Sum_probs=35.6
Q ss_pred CeEEEEeeecCCCCCCcEEEEEEEeCC--ceEEEEccCCChhhHHHHHHHHcCCCceEEEeehhhhHHHHH
Q 020975 50 LVIGFDCEGVDLCRHGSLCIMQLAFPD--AIYLVDAIQGGETVVKACKPALESSYITKVIHDCKRDSEALY 118 (319)
Q Consensus 50 ~~ia~D~E~~~~~~~g~l~~lqls~~~--~~~~id~~~l~~~~~~~L~~lLe~~~i~KV~hd~k~d~~~L~ 118 (319)
++.+.|+|+...+...++-.+++...+ ..+.++ ..+-+.++.++.+.. ...+||.++|...+.
T Consensus 3 ~v~~~DfEt~t~~~~~~~~~i~~~~~~~~~~~~~~-----n~i~~f~~~~~~~~~-~vy~HNLgFDg~fIl 67 (183)
T d2py5a1 3 KMYSCAFETTTKVEDCRVWAYGYMNIEDHSEYKIG-----NSLDEFMAWVLKVQA-DLYFHNLKFAGAFII 67 (183)
T ss_dssp CEEEEEEEECCBTTBCCEEEEEEEESSCTTCEEEE-----SCHHHHHHHHHHHCC-EEEETTHHHHHHHHH
T ss_pred ceEEEEEEeecCCCccceEEEEEEecCcEEEEEcc-----ccHHHHHHHhhccCc-eEEEECCCccHHHHH
Confidence 578899998544444455555555421 123221 112233444555554 469999999987654
No 34
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.11 E-value=12 Score=25.96 Aligned_cols=31 Identities=42% Similarity=0.663 Sum_probs=26.8
Q ss_pred cCCCCcchhhccccchHHHHHHhcchhhhcc
Q 020975 272 VPPGKMGRIIGRRGSSILAIKESCNAEILIG 302 (319)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (319)
.|....+.+|++.|.+|..|-+.+++.+.|-
T Consensus 21 IP~~~vg~vIGk~G~~Ik~I~~~tga~I~i~ 51 (104)
T d1we8a_ 21 VPQRSVGRIIGRGGETIRSICKASGAKITCD 51 (104)
T ss_dssp EETTTHHHHHTTTSHHHHHHHHHHCCEEEEC
T ss_pred ECHHHhcceECCCCcchHHHHHHcCCEEEEC
Confidence 3446677999999999999999999999883
No 35
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.40 E-value=2.2 Score=29.63 Aligned_cols=43 Identities=5% Similarity=-0.018 Sum_probs=29.1
Q ss_pred CCCcccccCccChHHHHHhhccCCCCcc----------hhhccccchHHHHHHh
Q 020975 251 VPDYLIVEGDVPEEEILSILDVPPGKMG----------RIIGRRGSSILAIKES 294 (319)
Q Consensus 251 ~~~~l~~~~~~~~~~i~~~ag~~~~~~~----------~~~~~~~~~~~~~~~~ 294 (319)
...+.++..+..+..+.++|...|.+.+ .-+++.|. ++.++..
T Consensus 28 ~~~~ip~~~I~~d~~L~~ia~~~P~t~~eL~~I~G~g~~k~~kyG~-~l~~I~~ 80 (94)
T d2e1fa1 28 NKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAMLAP-LLEVIKH 80 (94)
T ss_dssp HHHTSCHHHHCCHHHHHHHHHHCCCSHHHHTTSTTCCHHHHHHTHH-HHHHHHH
T ss_pred HHcCCCHheeeCHHHHHHHHHcCCCCHHHHcCCCCCCHHHHHHHHH-HHHHHHH
Confidence 3344555667788889999998885443 56678885 6655544
No 36
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.03 E-value=17 Score=23.11 Aligned_cols=32 Identities=38% Similarity=0.624 Sum_probs=27.0
Q ss_pred CCCCcchhhccccchHHHHHHhcchhhhccCC
Q 020975 273 PPGKMGRIIGRRGSSILAIKESCNAEILIGGA 304 (319)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (319)
|....+.+|++.|.+|..|-+.+++.+.|...
T Consensus 8 P~~~vg~IIGk~G~~Ik~I~~~sga~I~i~~~ 39 (71)
T d1j4wa2 8 PTGKTGLIIGKGGETIKSISQQSGARIELQRN 39 (71)
T ss_dssp ETTTHHHHHCGGGHHHHHHHHHHCCEEEEECC
T ss_pred ChHhcceEECCCCcChHHHHhhcCcEEEEeec
Confidence 34567899999999999999999999888543
Done!